6-155451336-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 155451336
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 155451336
    reference: chr 6
allele count: 1
allele frequency: 8.240354664864776e-6
allele num: 121354
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000434901
  ensembl transcript: ENST00000528535
  gene symbol: TIAM2
  hgvsc: ENST00000528535.1:c.979G>A
  hgvsp: ENSP00000434901.1:p.Ala327Thr
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000407746
  ensembl transcript: ENST00000456144
  gene symbol: TIAM2
  hgvsc: ENST00000456144.1:c.979G>A
  hgvsp: ENSP00000407746.1:p.Ala327Thr
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000433348
  ensembl transcript: ENST00000529824
  gene symbol: TIAM2
  hgvsc: ENST00000529824.2:c.979G>A
  hgvsp: ENSP00000433348.2:p.Ala327Thr
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000353528
  ensembl transcript: ENST00000360366
  gene symbol: TIAM2
  hgvsc: ENST00000360366.4:c.979G>A
  hgvsp: ENSP00000353528.4:p.Ala327Thr
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000437188
  ensembl transcript: ENST00000461783
  gene symbol: TIAM2
  hgvsc: ENST00000461783.3:c.979G>A
  hgvsp: ENSP00000437188.2:p.Ala327Thr
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000327315
  ensembl transcript: ENST00000318981
  gene symbol: TIAM2
  hgvsc: ENST00000318981.5:c.979G>A
  hgvsp: ENSP00000327315.5:p.Ala327Thr
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000356142
  ensembl transcript: ENST00000367174
  gene symbol: TIAM2
  hgvsc: ENST00000367174.2:c.-966G>A
  variant of: http://identifiers.org/hgnc/11806
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6556
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20524
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 665
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1672
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30441
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2625
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2568
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ala327Thr
num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: G
site quality: MQ
site quality: QD
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum

6-155451339-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 155451339
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 155451339
    reference: chr 6
allele count: 6
allele frequency: 4.944049836022347e-5
allele num: 121358
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000433348
  ensembl transcript: ENST00000529824
  gene symbol: TIAM2
  hgvsc: ENST00000529824.2:c.982A>G
  hgvsp: ENSP00000433348.2:p.Ser328Gly
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000407746
  ensembl transcript: ENST00000456144
  gene symbol: TIAM2
  hgvsc: ENST00000456144.1:c.982A>G
  hgvsp: ENSP00000407746.1:p.Ser328Gly
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000434901
  ensembl transcript: ENST00000528535
  gene symbol: TIAM2
  hgvsc: ENST00000528535.1:c.982A>G
  hgvsp: ENSP00000434901.1:p.Ser328Gly
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000353528
  ensembl transcript: ENST00000360366
  gene symbol: TIAM2
  hgvsc: ENST00000360366.4:c.982A>G
  hgvsp: ENSP00000353528.4:p.Ser328Gly
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000327315
  ensembl transcript: ENST00000318981
  gene symbol: TIAM2
  hgvsc: ENST00000318981.5:c.982A>G
  hgvsp: ENSP00000327315.5:p.Ser328Gly
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000356142
  ensembl transcript: ENST00000367174
  gene symbol: TIAM2
  hgvsc: ENST00000367174.2:c.-963A>G
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000437188
  ensembl transcript: ENST00000461783
  gene symbol: TIAM2
  hgvsc: ENST00000461783.3:c.982A>G
  hgvsp: ENSP00000437188.2:p.Ser328Gly
  variant of: http://identifiers.org/hgnc/11806
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 663
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20520
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1672
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30430
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6563
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 6.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 746
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 802
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Ser328Gly
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: A
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: ClippingRankSum

6-155451351-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 155451351
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 155451351
    reference: chr 6
allele count: 36
allele frequency: 2.966478789676654e-4
allele num: 121356
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000407746
  ensembl transcript: ENST00000456144
  gene symbol: TIAM2
  hgvsc: ENST00000456144.1:c.994C>T
  hgvsp: ENSP00000407746.1:p.Arg332Cys
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000434901
  ensembl transcript: ENST00000528535
  gene symbol: TIAM2
  hgvsc: ENST00000528535.1:c.994C>T
  hgvsp: ENSP00000434901.1:p.Arg332Cys
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000356142
  ensembl transcript: ENST00000367174
  gene symbol: TIAM2
  hgvsc: ENST00000367174.2:c.-951C>T
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000327315
  ensembl transcript: ENST00000318981
  gene symbol: TIAM2
  hgvsc: ENST00000318981.5:c.994C>T
  hgvsp: ENSP00000327315.5:p.Arg332Cys
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000437188
  ensembl transcript: ENST00000461783
  gene symbol: TIAM2
  hgvsc: ENST00000461783.3:c.994C>T
  hgvsp: ENSP00000437188.2:p.Arg332Cys
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000433348
  ensembl transcript: ENST00000529824
  gene symbol: TIAM2
  hgvsc: ENST00000529824.2:c.994C>T
  hgvsp: ENSP00000433348.2:p.Arg332Cys
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000353528
  ensembl transcript: ENST00000360366
  gene symbol: TIAM2
  hgvsc: ENST00000360366.4:c.994C>T
  hgvsp: ENSP00000353528.4:p.Arg332Cys
  variant of: http://identifiers.org/hgnc/11806
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 30391
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6558
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 663
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 4.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 20518
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1679
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 6.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.75e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 1726
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 745
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2563
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2631
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Arg332Cys
num of homozygotes: 0
population: Other
population: African
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: ReadPosRankSum

6-155451352-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 155451352
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 155451352
    reference: chr 6
allele count: 26918
allele frequency: 2.218467725984044e-1
allele num: 121336
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000353528
  ensembl transcript: ENST00000360366
  gene symbol: TIAM2
  hgvsc: ENST00000360366.4:c.995G>A
  hgvsp: ENSP00000353528.4:p.Arg332His
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000407746
  ensembl transcript: ENST00000456144
  gene symbol: TIAM2
  hgvsc: ENST00000456144.1:c.995G>A
  hgvsp: ENSP00000407746.1:p.Arg332His
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000437188
  ensembl transcript: ENST00000461783
  gene symbol: TIAM2
  hgvsc: ENST00000461783.3:c.995G>A
  hgvsp: ENSP00000437188.2:p.Arg332His
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000434901
  ensembl transcript: ENST00000528535
  gene symbol: TIAM2
  hgvsc: ENST00000528535.1:c.995G>A
  hgvsp: ENSP00000434901.1:p.Arg332His
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000433348
  ensembl transcript: ENST00000529824
  gene symbol: TIAM2
  hgvsc: ENST00000529824.2:c.995G>A
  hgvsp: ENSP00000433348.2:p.Arg332His
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000356142
  ensembl transcript: ENST00000367174
  gene symbol: TIAM2
  hgvsc: ENST00000367174.2:c.-950G>A
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000327315
  ensembl transcript: ENST00000318981
  gene symbol: TIAM2
  hgvsc: ENST00000318981.5:c.995G>A
  hgvsp: ENSP00000327315.5:p.Arg332His
  variant of: http://identifiers.org/hgnc/11806
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 903
  bin: 4.75e1
  variant carriers: 830
genotype depth: GenotypeDepth
  all individuals: 852
  bin: 3.75e1
  variant carriers: 362
genotype depth: GenotypeDepth
  all individuals: 720
  bin: 4.25e1
  variant carriers: 569
genotype depth: GenotypeDepth
  all individuals: 19455
  bin: 2.25e1
  variant carriers: 62
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1701
  bin: 6.25e1
  variant carriers: 1693
genotype depth: GenotypeDepth
  all individuals: 1793
  bin: 8.75e1
  variant carriers: 1786
genotype depth: GenotypeDepth
  all individuals: 1942
  bin: 6.75e1
  variant carriers: 1937
genotype depth: GenotypeDepth
  all individuals: 3184
  bin: 3.25e1
  variant carriers: 199
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 1.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 1461
  bin: 5.75e1
  variant carriers: 1446
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 1.75e1
  variant carriers: 38
genotype depth: GenotypeDepth
  all individuals: 14216
  bin: 2.75e1
  variant carriers: 120
genotype depth: GenotypeDepth
  all individuals: 1061
  bin: 5.25e1
  variant carriers: 1031
genotype depth: GenotypeDepth
  all individuals: 2161
  bin: 7.75e1
  variant carriers: 2155
genotype depth: GenotypeDepth
  all individuals: 2007
  bin: 8.25e1
  variant carriers: 1997
genotype depth: GenotypeDepth
  all individuals: 1575
  bin: 9.25e1
  variant carriers: 1570
genotype depth: GenotypeDepth
  all individuals: 2020
  bin: 7.25e1
  variant carriers: 2014
genotype depth: GenotypeDepth
  all individuals: 5538
  bin: 9.75e1
  variant carriers: 5527
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 5.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 5.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 31141
  bin: 6.25e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 3.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 661
  bin: 7.75e1
  variant carriers: 14
genotype quality: GenotypeQuality
  all individuals: 798
  bin: 7.25e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 4.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 1
hgvs: p.Arg332His
num of homozygotes: 3578
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: South Asian
population: Other
reference allele: G
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum

6-155451358-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 155451358
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 155451358
    reference: chr 6
allele count: 4
allele frequency: 3.296087544085171e-5
allele num: 121356
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000353528
  ensembl transcript: ENST00000360366
  gene symbol: TIAM2
  hgvsc: ENST00000360366.4:c.1001C>G
  hgvsp: ENSP00000353528.4:p.Ser334Cys
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000407746
  ensembl transcript: ENST00000456144
  gene symbol: TIAM2
  hgvsc: ENST00000456144.1:c.1001C>G
  hgvsp: ENSP00000407746.1:p.Ser334Cys
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000433348
  ensembl transcript: ENST00000529824
  gene symbol: TIAM2
  hgvsc: ENST00000529824.2:c.1001C>G
  hgvsp: ENSP00000433348.2:p.Ser334Cys
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000356142
  ensembl transcript: ENST00000367174
  gene symbol: TIAM2
  hgvsc: ENST00000367174.2:c.-944C>G
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000437188
  ensembl transcript: ENST00000461783
  gene symbol: TIAM2
  hgvsc: ENST00000461783.3:c.1001C>G
  hgvsp: ENSP00000437188.2:p.Ser334Cys
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000327315
  ensembl transcript: ENST00000318981
  gene symbol: TIAM2
  hgvsc: ENST00000318981.5:c.1001C>G
  hgvsp: ENSP00000327315.5:p.Ser334Cys
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000434901
  ensembl transcript: ENST00000528535
  gene symbol: TIAM2
  hgvsc: ENST00000528535.1:c.1001C>G
  hgvsp: ENSP00000434901.1:p.Ser334Cys
  variant of: http://identifiers.org/hgnc/11806
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8500
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26670
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22943
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1417
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 893
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 296
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Ser334Cys
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum

6-155451358-CTT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 155451358
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 155451356
    reference: chr 6
allele count: 1
allele frequency: 8.240218860212928e-6
allele num: 121356
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000433348
  ensembl transcript: ENST00000529824
  gene symbol: TIAM2
  hgvsc: ENST00000529824.2:c.1004_1005delTT
  hgvsp: ENSP00000433348.2:p.Phe335CysfsTer5
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000353528
  ensembl transcript: ENST00000360366
  gene symbol: TIAM2
  hgvsc: ENST00000360366.4:c.1004_1005delTT
  hgvsp: ENSP00000353528.4:p.Phe335CysfsTer5
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000407746
  ensembl transcript: ENST00000456144
  gene symbol: TIAM2
  hgvsc: ENST00000456144.1:c.1004_1005delTT
  hgvsp: ENSP00000407746.1:p.Phe335CysfsTer5
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000356142
  ensembl transcript: ENST00000367174
  gene symbol: TIAM2
  hgvsc: ENST00000367174.2:c.-941_-940delTT
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000437188
  ensembl transcript: ENST00000461783
  gene symbol: TIAM2
  hgvsc: ENST00000461783.3:c.1004_1005delTT
  hgvsp: ENSP00000437188.2:p.Phe335CysfsTer5
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000434901
  ensembl transcript: ENST00000528535
  gene symbol: TIAM2
  hgvsc: ENST00000528535.1:c.1004_1005delTT
  hgvsp: ENSP00000434901.1:p.Phe335CysfsTer5
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000327315
  ensembl transcript: ENST00000318981
  gene symbol: TIAM2
  hgvsc: ENST00000318981.5:c.1004_1005delTT
  hgvsp: ENSP00000327315.5:p.Phe335CysfsTer5
  variant of: http://identifiers.org/hgnc/11806
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22943
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26670
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8500
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1417
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 642
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1395
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48270
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1558
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Phe335CysfsTer5
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Latino
population: African
population: Other
population: East Asian
population: European (Finnish)
reference allele: CTT
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum

6-155451368-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 155451368
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 155451368
    reference: chr 6
allele count: 20
allele frequency: 1.648070932972955e-4
allele num: 121354
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000356142
  ensembl transcript: ENST00000367174
  gene symbol: TIAM2
  hgvsc: ENST00000367174.2:c.-934C>T
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000437188
  ensembl transcript: ENST00000461783
  gene symbol: TIAM2
  hgvsc: ENST00000461783.3:c.1011C>T
  hgvsp: ENST00000461783.3:c.1011C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000353528
  ensembl transcript: ENST00000360366
  gene symbol: TIAM2
  hgvsc: ENST00000360366.4:c.1011C>T
  hgvsp: ENST00000360366.4:c.1011C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000434901
  ensembl transcript: ENST00000528535
  gene symbol: TIAM2
  hgvsc: ENST00000528535.1:c.1011C>T
  hgvsp: ENST00000528535.1:c.1011C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000407746
  ensembl transcript: ENST00000456144
  gene symbol: TIAM2
  hgvsc: ENST00000456144.1:c.1011C>T
  hgvsp: ENST00000456144.1:c.1011C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000327315
  ensembl transcript: ENST00000318981
  gene symbol: TIAM2
  hgvsc: ENST00000318981.5:c.1011C>T
  hgvsp: ENST00000318981.5:c.1011C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000433348
  ensembl transcript: ENST00000529824
  gene symbol: TIAM2
  hgvsc: ENST00000529824.2:c.1011C>T
  hgvsp: ENST00000529824.2:c.1011C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11806
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26674
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1411
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 9.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22933
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8497
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 5.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 291
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ser337Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: Other
reference allele: C
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum

6-155451369-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 155451369
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 155451369
    reference: chr 6
allele count: 3
allele frequency: 2.47222863170386e-5
allele num: 121348
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000433348
  ensembl transcript: ENST00000529824
  gene symbol: TIAM2
  hgvsc: ENST00000529824.2:c.1012G>A
  hgvsp: ENSP00000433348.2:p.Asp338Asn
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000407746
  ensembl transcript: ENST00000456144
  gene symbol: TIAM2
  hgvsc: ENST00000456144.1:c.1012G>A
  hgvsp: ENSP00000407746.1:p.Asp338Asn
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000353528
  ensembl transcript: ENST00000360366
  gene symbol: TIAM2
  hgvsc: ENST00000360366.4:c.1012G>A
  hgvsp: ENSP00000353528.4:p.Asp338Asn
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000434901
  ensembl transcript: ENST00000528535
  gene symbol: TIAM2
  hgvsc: ENST00000528535.1:c.1012G>A
  hgvsp: ENSP00000434901.1:p.Asp338Asn
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000327315
  ensembl transcript: ENST00000318981
  gene symbol: TIAM2
  hgvsc: ENST00000318981.5:c.1012G>A
  hgvsp: ENSP00000327315.5:p.Asp338Asn
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000437188
  ensembl transcript: ENST00000461783
  gene symbol: TIAM2
  hgvsc: ENST00000461783.3:c.1012G>A
  hgvsp: ENSP00000437188.2:p.Asp338Asn
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000356142
  ensembl transcript: ENST00000367174
  gene symbol: TIAM2
  hgvsc: ENST00000367174.2:c.-933G>A
  variant of: http://identifiers.org/hgnc/11806
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8498
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22935
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26676
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1413
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7214
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1554
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Asp338Asn
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
reference allele: G
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP

6-155451372-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 155451372
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 155451372
    reference: chr 6
allele count: 46
allele frequency: 3.790750568612585e-4
allele num: 121348
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000327315
  ensembl transcript: ENST00000318981
  gene symbol: TIAM2
  hgvsc: ENST00000318981.5:c.1015A>G
  hgvsp: ENSP00000327315.5:p.Ile339Val
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000433348
  ensembl transcript: ENST00000529824
  gene symbol: TIAM2
  hgvsc: ENST00000529824.2:c.1015A>G
  hgvsp: ENSP00000433348.2:p.Ile339Val
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000356142
  ensembl transcript: ENST00000367174
  gene symbol: TIAM2
  hgvsc: ENST00000367174.2:c.-930A>G
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000353528
  ensembl transcript: ENST00000360366
  gene symbol: TIAM2
  hgvsc: ENST00000360366.4:c.1015A>G
  hgvsp: ENSP00000353528.4:p.Ile339Val
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000407746
  ensembl transcript: ENST00000456144
  gene symbol: TIAM2
  hgvsc: ENST00000456144.1:c.1015A>G
  hgvsp: ENSP00000407746.1:p.Ile339Val
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000434901
  ensembl transcript: ENST00000528535
  gene symbol: TIAM2
  hgvsc: ENST00000528535.1:c.1015A>G
  hgvsp: ENSP00000434901.1:p.Ile339Val
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000437188
  ensembl transcript: ENST00000461783
  gene symbol: TIAM2
  hgvsc: ENST00000461783.3:c.1015A>G
  hgvsp: ENSP00000437188.2:p.Ile339Val
  variant of: http://identifiers.org/hgnc/11806
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1413
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8496
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26651
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 9.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 6.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 22916
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 291
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7200
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 232
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1385
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Ile339Val
num of homozygotes: 1
population: East Asian
population: South Asian
population: African
population: Latino
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum

6-155451373-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 155451373
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 155451373
    reference: chr 6
allele count: 1
allele frequency: 8.241169586787756e-6
allele num: 121342
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000407746
  ensembl transcript: ENST00000456144
  gene symbol: TIAM2
  hgvsc: ENST00000456144.1:c.1016T>C
  hgvsp: ENSP00000407746.1:p.Ile339Thr
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000353528
  ensembl transcript: ENST00000360366
  gene symbol: TIAM2
  hgvsc: ENST00000360366.4:c.1016T>C
  hgvsp: ENSP00000353528.4:p.Ile339Thr
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000433348
  ensembl transcript: ENST00000529824
  gene symbol: TIAM2
  hgvsc: ENST00000529824.2:c.1016T>C
  hgvsp: ENSP00000433348.2:p.Ile339Thr
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000327315
  ensembl transcript: ENST00000318981
  gene symbol: TIAM2
  hgvsc: ENST00000318981.5:c.1016T>C
  hgvsp: ENSP00000327315.5:p.Ile339Thr
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000434901
  ensembl transcript: ENST00000528535
  gene symbol: TIAM2
  hgvsc: ENST00000528535.1:c.1016T>C
  hgvsp: ENSP00000434901.1:p.Ile339Thr
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000437188
  ensembl transcript: ENST00000461783
  gene symbol: TIAM2
  hgvsc: ENST00000461783.3:c.1016T>C
  hgvsp: ENSP00000437188.2:p.Ile339Thr
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000356142
  ensembl transcript: ENST00000367174
  gene symbol: TIAM2
  hgvsc: ENST00000367174.2:c.-929T>C
  variant of: http://identifiers.org/hgnc/11806
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22913
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8508
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26675
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1414
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 292
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7209
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1548
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Ile339Thr
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: African
population: Other
population: Latino
population: European (Finnish)
reference allele: T
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff

6-155451390-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 155451390
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 155451390
    reference: chr 6
allele count: 1
allele frequency: 8.24783082049421e-6
allele num: 121244
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000356142
  ensembl transcript: ENST00000367174
  gene symbol: TIAM2
  hgvsc: ENST00000367174.2:c.-912G>A
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000434901
  ensembl transcript: ENST00000528535
  gene symbol: TIAM2
  hgvsc: ENST00000528535.1:c.1033G>A
  hgvsp: ENSP00000434901.1:p.Val345Met
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000437188
  ensembl transcript: ENST00000461783
  gene symbol: TIAM2
  hgvsc: ENST00000461783.3:c.1033G>A
  hgvsp: ENSP00000437188.2:p.Val345Met
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000327315
  ensembl transcript: ENST00000318981
  gene symbol: TIAM2
  hgvsc: ENST00000318981.5:c.1033G>A
  hgvsp: ENSP00000327315.5:p.Val345Met
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000433348
  ensembl transcript: ENST00000529824
  gene symbol: TIAM2
  hgvsc: ENST00000529824.2:c.1033G>A
  hgvsp: ENSP00000433348.2:p.Val345Met
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000407746
  ensembl transcript: ENST00000456144
  gene symbol: TIAM2
  hgvsc: ENST00000456144.1:c.1033G>A
  hgvsp: ENSP00000407746.1:p.Val345Met
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000353528
  ensembl transcript: ENST00000360366
  gene symbol: TIAM2
  hgvsc: ENST00000360366.4:c.1033G>A
  hgvsp: ENSP00000353528.4:p.Val345Met
  variant of: http://identifiers.org/hgnc/11806
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26610
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1412
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8498
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22863
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 640
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1557
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 286
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Val345Met
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Latino
population: European (Finnish)
population: Other
population: East Asian
population: African
reference allele: G
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff

6-155451398-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 155451398
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 155451398
    reference: chr 6
allele count: 2
allele frequency: 1.650110557407346e-5
allele num: 121204
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000437188
  ensembl transcript: ENST00000461783
  gene symbol: TIAM2
  hgvsc: ENST00000461783.3:c.1041C>G
  hgvsp: ENSP00000437188.2:p.His347Gln
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000407746
  ensembl transcript: ENST00000456144
  gene symbol: TIAM2
  hgvsc: ENST00000456144.1:c.1041C>G
  hgvsp: ENSP00000407746.1:p.His347Gln
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000356142
  ensembl transcript: ENST00000367174
  gene symbol: TIAM2
  hgvsc: ENST00000367174.2:c.-904C>G
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000434901
  ensembl transcript: ENST00000528535
  gene symbol: TIAM2
  hgvsc: ENST00000528535.1:c.1041C>G
  hgvsp: ENSP00000434901.1:p.His347Gln
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000327315
  ensembl transcript: ENST00000318981
  gene symbol: TIAM2
  hgvsc: ENST00000318981.5:c.1041C>G
  hgvsp: ENSP00000327315.5:p.His347Gln
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000433348
  ensembl transcript: ENST00000529824
  gene symbol: TIAM2
  hgvsc: ENST00000529824.2:c.1041C>G
  hgvsp: ENSP00000433348.2:p.His347Gln
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000353528
  ensembl transcript: ENST00000360366
  gene symbol: TIAM2
  hgvsc: ENST00000360366.4:c.1041C>G
  hgvsp: ENSP00000353528.4:p.His347Gln
  variant of: http://identifiers.org/hgnc/11806
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22844
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1407
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26603
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8492
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 861
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1554
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 228
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48129
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 2.75e1
  variant carriers: 0
hgvs: p.His347Gln
num of homozygotes: 1
population: African
population: South Asian
population: Other
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff

6-155451398-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 155451398
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 155451398
    reference: chr 6
allele count: 4
allele frequency: 3.300221114814693e-5
allele num: 121204
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000407746
  ensembl transcript: ENST00000456144
  gene symbol: TIAM2
  hgvsc: ENST00000456144.1:c.1041C>T
  hgvsp: ENST00000456144.1:c.1041C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000353528
  ensembl transcript: ENST00000360366
  gene symbol: TIAM2
  hgvsc: ENST00000360366.4:c.1041C>T
  hgvsp: ENST00000360366.4:c.1041C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000437188
  ensembl transcript: ENST00000461783
  gene symbol: TIAM2
  hgvsc: ENST00000461783.3:c.1041C>T
  hgvsp: ENST00000461783.3:c.1041C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000356142
  ensembl transcript: ENST00000367174
  gene symbol: TIAM2
  hgvsc: ENST00000367174.2:c.-904C>T
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000327315
  ensembl transcript: ENST00000318981
  gene symbol: TIAM2
  hgvsc: ENST00000318981.5:c.1041C>T
  hgvsp: ENST00000318981.5:c.1041C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000433348
  ensembl transcript: ENST00000529824
  gene symbol: TIAM2
  hgvsc: ENST00000529824.2:c.1041C>T
  hgvsp: ENST00000529824.2:c.1041C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000434901
  ensembl transcript: ENST00000528535
  gene symbol: TIAM2
  hgvsc: ENST00000528535.1:c.1041C>T
  hgvsp: ENST00000528535.1:c.1041C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11806
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22844
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8492
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1407
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26603
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 159
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1554
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 639
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 228
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 4.25e1
  variant carriers: 0
hgvs: p.His347His
num of homozygotes: 0
population: Other
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: C
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum

6-155451399-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 155451399
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 155451399
    reference: chr 6
allele count: 220
allele frequency: 1.815151565155691e-3
allele num: 121202
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000353528
  ensembl transcript: ENST00000360366
  gene symbol: TIAM2
  hgvsc: ENST00000360366.4:c.1042G>A
  hgvsp: ENSP00000353528.4:p.Gly348Arg
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000433348
  ensembl transcript: ENST00000529824
  gene symbol: TIAM2
  hgvsc: ENST00000529824.2:c.1042G>A
  hgvsp: ENSP00000433348.2:p.Gly348Arg
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000327315
  ensembl transcript: ENST00000318981
  gene symbol: TIAM2
  hgvsc: ENST00000318981.5:c.1042G>A
  hgvsp: ENSP00000327315.5:p.Gly348Arg
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000434901
  ensembl transcript: ENST00000528535
  gene symbol: TIAM2
  hgvsc: ENST00000528535.1:c.1042G>A
  hgvsp: ENSP00000434901.1:p.Gly348Arg
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000407746
  ensembl transcript: ENST00000456144
  gene symbol: TIAM2
  hgvsc: ENST00000456144.1:c.1042G>A
  hgvsp: ENSP00000407746.1:p.Gly348Arg
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000437188
  ensembl transcript: ENST00000461783
  gene symbol: TIAM2
  hgvsc: ENST00000461783.3:c.1042G>A
  hgvsp: ENSP00000437188.2:p.Gly348Arg
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000356142
  ensembl transcript: ENST00000367174
  gene symbol: TIAM2
  hgvsc: ENST00000367174.2:c.-903G>A
  variant of: http://identifiers.org/hgnc/11806
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 26589
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 4.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 8481
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 6.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 22774
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 5.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1403
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.75e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 9.75e1
  variant carriers: 81
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 4.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 5.25e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 277
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48101
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 635
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Gly348Arg
num of homozygotes: 3
population: Latino
population: Other
population: African
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: East Asian
reference allele: G
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum

6-155451402-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 155451402
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 155451402
    reference: chr 6
allele count: 2
allele frequency: 1.650246711883427e-5
allele num: 121194
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000407746
  ensembl transcript: ENST00000456144
  gene symbol: TIAM2
  hgvsc: ENST00000456144.1:c.1045G>A
  hgvsp: ENSP00000407746.1:p.Asp349Asn
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000433348
  ensembl transcript: ENST00000529824
  gene symbol: TIAM2
  hgvsc: ENST00000529824.2:c.1045G>A
  hgvsp: ENSP00000433348.2:p.Asp349Asn
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000434901
  ensembl transcript: ENST00000528535
  gene symbol: TIAM2
  hgvsc: ENST00000528535.1:c.1045G>A
  hgvsp: ENSP00000434901.1:p.Asp349Asn
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000353528
  ensembl transcript: ENST00000360366
  gene symbol: TIAM2
  hgvsc: ENST00000360366.4:c.1045G>A
  hgvsp: ENSP00000353528.4:p.Asp349Asn
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000437188
  ensembl transcript: ENST00000461783
  gene symbol: TIAM2
  hgvsc: ENST00000461783.3:c.1045G>A
  hgvsp: ENSP00000437188.2:p.Asp349Asn
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000327315
  ensembl transcript: ENST00000318981
  gene symbol: TIAM2
  hgvsc: ENST00000318981.5:c.1045G>A
  hgvsp: ENSP00000327315.5:p.Asp349Asn
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000356142
  ensembl transcript: ENST00000367174
  gene symbol: TIAM2
  hgvsc: ENST00000367174.2:c.-900G>A
  variant of: http://identifiers.org/hgnc/11806
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8531
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22819
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26719
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1409
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7186
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 160
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Asp349Asn
num of homozygotes: 0
population: Other
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
reference allele: G
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum

6-155451404-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 155451404
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 155451404
    reference: chr 6
allele count: 1
allele frequency: 8.25300409349003e-6
allele num: 121168
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000437188
  ensembl transcript: ENST00000461783
  gene symbol: TIAM2
  hgvsc: ENST00000461783.3:c.1047C>T
  hgvsp: ENST00000461783.3:c.1047C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000353528
  ensembl transcript: ENST00000360366
  gene symbol: TIAM2
  hgvsc: ENST00000360366.4:c.1047C>T
  hgvsp: ENST00000360366.4:c.1047C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000356142
  ensembl transcript: ENST00000367174
  gene symbol: TIAM2
  hgvsc: ENST00000367174.2:c.-898C>T
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000407746
  ensembl transcript: ENST00000456144
  gene symbol: TIAM2
  hgvsc: ENST00000456144.1:c.1047C>T
  hgvsp: ENST00000456144.1:c.1047C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000327315
  ensembl transcript: ENST00000318981
  gene symbol: TIAM2
  hgvsc: ENST00000318981.5:c.1047C>T
  hgvsp: ENST00000318981.5:c.1047C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000433348
  ensembl transcript: ENST00000529824
  gene symbol: TIAM2
  hgvsc: ENST00000529824.2:c.1047C>T
  hgvsp: ENST00000529824.2:c.1047C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000434901
  ensembl transcript: ENST00000528535
  gene symbol: TIAM2
  hgvsc: ENST00000528535.1:c.1047C>T
  hgvsp: ENST00000528535.1:c.1047C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11806
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8529
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26712
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22810
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1410
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 176
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7186
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 224
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Asp349Asp
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Finnish)
population: Other
population: African
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD

6-155451425-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 155451425
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 155451425
    reference: chr 6
allele count: 1
allele frequency: 8.264736024331383e-6
allele num: 120996
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000353528
  ensembl transcript: ENST00000360366
  gene symbol: TIAM2
  hgvsc: ENST00000360366.4:c.1068C>T
  hgvsp: ENST00000360366.4:c.1068C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000433348
  ensembl transcript: ENST00000529824
  gene symbol: TIAM2
  hgvsc: ENST00000529824.2:c.1068C>T
  hgvsp: ENST00000529824.2:c.1068C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000434901
  ensembl transcript: ENST00000528535
  gene symbol: TIAM2
  hgvsc: ENST00000528535.1:c.1068C>T
  hgvsp: ENST00000528535.1:c.1068C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000407746
  ensembl transcript: ENST00000456144
  gene symbol: TIAM2
  hgvsc: ENST00000456144.1:c.1068C>T
  hgvsp: ENST00000456144.1:c.1068C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000327315
  ensembl transcript: ENST00000318981
  gene symbol: TIAM2
  hgvsc: ENST00000318981.5:c.1068C>T
  hgvsp: ENST00000318981.5:c.1068C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000437188
  ensembl transcript: ENST00000461783
  gene symbol: TIAM2
  hgvsc: ENST00000461783.3:c.1068C>T
  hgvsp: ENST00000461783.3:c.1068C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000356142
  ensembl transcript: ENST00000367174
  gene symbol: TIAM2
  hgvsc: ENST00000367174.2:c.-877C>T
  variant of: http://identifiers.org/hgnc/11806
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22706
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1414
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26609
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8517
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48103
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 310
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Phe356Phe
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: Other
population: South Asian
population: East Asian
population: African
population: European (Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: FS

6-155451429-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 155451429
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 155451429
    reference: chr 6
allele count: 1
allele frequency: 8.269793751343841e-6
allele num: 120922
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000434901
  ensembl transcript: ENST00000528535
  gene symbol: TIAM2
  hgvsc: ENST00000528535.1:c.1072C>G
  hgvsp: ENSP00000434901.1:p.Leu358Val
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000437188
  ensembl transcript: ENST00000461783
  gene symbol: TIAM2
  hgvsc: ENST00000461783.3:c.1072C>G
  hgvsp: ENSP00000437188.2:p.Leu358Val
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000407746
  ensembl transcript: ENST00000456144
  gene symbol: TIAM2
  hgvsc: ENST00000456144.1:c.1072C>G
  hgvsp: ENSP00000407746.1:p.Leu358Val
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000433348
  ensembl transcript: ENST00000529824
  gene symbol: TIAM2
  hgvsc: ENST00000529824.2:c.1072C>G
  hgvsp: ENSP00000433348.2:p.Leu358Val
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000356142
  ensembl transcript: ENST00000367174
  gene symbol: TIAM2
  hgvsc: ENST00000367174.2:c.-873C>G
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000353528
  ensembl transcript: ENST00000360366
  gene symbol: TIAM2
  hgvsc: ENST00000360366.4:c.1072C>G
  hgvsp: ENSP00000353528.4:p.Leu358Val
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000327315
  ensembl transcript: ENST00000318981
  gene symbol: TIAM2
  hgvsc: ENST00000318981.5:c.1072C>G
  hgvsp: ENSP00000327315.5:p.Leu358Val
  variant of: http://identifiers.org/hgnc/11806
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 22669
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1410
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8506
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26586
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 636
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7149
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1367
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Leu358Val
num of homozygotes: 0
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: African
reference allele: C
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum

6-155451429-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 155451429
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 155451429
    reference: chr 6
allele count: 3
allele frequency: 2.480938125403152e-5
allele num: 120922
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000353528
  ensembl transcript: ENST00000360366
  gene symbol: TIAM2
  hgvsc: ENST00000360366.4:c.1072C>T
  hgvsp: ENSP00000353528.4:p.Leu358Phe
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000356142
  ensembl transcript: ENST00000367174
  gene symbol: TIAM2
  hgvsc: ENST00000367174.2:c.-873C>T
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000407746
  ensembl transcript: ENST00000456144
  gene symbol: TIAM2
  hgvsc: ENST00000456144.1:c.1072C>T
  hgvsp: ENSP00000407746.1:p.Leu358Phe
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000437188
  ensembl transcript: ENST00000461783
  gene symbol: TIAM2
  hgvsc: ENST00000461783.3:c.1072C>T
  hgvsp: ENSP00000437188.2:p.Leu358Phe
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000434901
  ensembl transcript: ENST00000528535
  gene symbol: TIAM2
  hgvsc: ENST00000528535.1:c.1072C>T
  hgvsp: ENSP00000434901.1:p.Leu358Phe
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000327315
  ensembl transcript: ENST00000318981
  gene symbol: TIAM2
  hgvsc: ENST00000318981.5:c.1072C>T
  hgvsp: ENSP00000327315.5:p.Leu358Phe
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000433348
  ensembl transcript: ENST00000529824
  gene symbol: TIAM2
  hgvsc: ENST00000529824.2:c.1072C>T
  hgvsp: ENSP00000433348.2:p.Leu358Phe
  variant of: http://identifiers.org/hgnc/11806
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26586
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22669
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1410
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8506
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48023
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 636
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1545
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Leu358Phe
num of homozygotes: 0
population: African
population: South Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: QD

http://identifiers.org/exac.variant/6-155451432-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 155451432
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 155451432
    reference: chr 6
allele count: 5
allele frequency: 4.13544406398359e-5
allele num: 120906
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000353528
  ensembl transcript: ENST00000360366
  gene symbol: TIAM2
  hgvsc: ENST00000360366.4:c.1075C>A
  hgvsp: ENSP00000353528.4:p.Pro359Thr
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000434901
  ensembl transcript: ENST00000528535
  gene symbol: TIAM2
  hgvsc: ENST00000528535.1:c.1075C>A
  hgvsp: ENSP00000434901.1:p.Pro359Thr
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000433348
  ensembl transcript: ENST00000529824
  gene symbol: TIAM2
  hgvsc: ENST00000529824.2:c.1075C>A
  hgvsp: ENSP00000433348.2:p.Pro359Thr
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000407746
  ensembl transcript: ENST00000456144
  gene symbol: TIAM2
  hgvsc: ENST00000456144.1:c.1075C>A
  hgvsp: ENSP00000407746.1:p.Pro359Thr
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000327315
  ensembl transcript: ENST00000318981
  gene symbol: TIAM2
  hgvsc: ENST00000318981.5:c.1075C>A
  hgvsp: ENSP00000327315.5:p.Pro359Thr
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000437188
  ensembl transcript: ENST00000461783
  gene symbol: TIAM2
  hgvsc: ENST00000461783.3:c.1075C>A
  hgvsp: ENSP00000437188.2:p.Pro359Thr
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000356142
  ensembl transcript: ENST00000367174
  gene symbol: TIAM2
  hgvsc: ENST00000367174.2:c.-870C>A
  variant of: http://identifiers.org/hgnc/11806
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26583
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8502
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22661
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1408
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7148
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 225
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 636
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1368
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48007
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1542
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Pro359Thr
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Other
population: African
population: European (Finnish)
population: Latino
reference allele: C
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: DP

6-155451438-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 155451438
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 155451438
    reference: chr 6
allele count: 2
allele frequency: 1.654861984510492e-5
allele num: 120856
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000407746
  ensembl transcript: ENST00000456144
  gene symbol: TIAM2
  hgvsc: ENST00000456144.1:c.1081C>T
  hgvsp: ENSP00000407746.1:p.Arg361Trp
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000434901
  ensembl transcript: ENST00000528535
  gene symbol: TIAM2
  hgvsc: ENST00000528535.1:c.1081C>T
  hgvsp: ENSP00000434901.1:p.Arg361Trp
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000356142
  ensembl transcript: ENST00000367174
  gene symbol: TIAM2
  hgvsc: ENST00000367174.2:c.-864C>T
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000353528
  ensembl transcript: ENST00000360366
  gene symbol: TIAM2
  hgvsc: ENST00000360366.4:c.1081C>T
  hgvsp: ENSP00000353528.4:p.Arg361Trp
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000433348
  ensembl transcript: ENST00000529824
  gene symbol: TIAM2
  hgvsc: ENST00000529824.2:c.1081C>T
  hgvsp: ENSP00000433348.2:p.Arg361Trp
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000437188
  ensembl transcript: ENST00000461783
  gene symbol: TIAM2
  hgvsc: ENST00000461783.3:c.1081C>T
  hgvsp: ENSP00000437188.2:p.Arg361Trp
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000327315
  ensembl transcript: ENST00000318981
  gene symbol: TIAM2
  hgvsc: ENST00000318981.5:c.1081C>T
  hgvsp: ENSP00000327315.5:p.Arg361Trp
  variant of: http://identifiers.org/hgnc/11806
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1408
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8505
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22651
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26567
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1544
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7134
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1368
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 756
  bin: 9.75e1
  variant carriers: 2
hgvs: p.Arg361Trp
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
population: Latino
population: Other
reference allele: C
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/6-155451448-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 155451448
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 155451448
    reference: chr 6
allele count: 2
allele frequency: 1.656095258599275e-5
allele num: 120766
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000353528
  ensembl transcript: ENST00000360366
  gene symbol: TIAM2
  hgvsc: ENST00000360366.4:c.1091A>C
  hgvsp: ENSP00000353528.4:p.Lys364Thr
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000434901
  ensembl transcript: ENST00000528535
  gene symbol: TIAM2
  hgvsc: ENST00000528535.1:c.1091A>C
  hgvsp: ENSP00000434901.1:p.Lys364Thr
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000433348
  ensembl transcript: ENST00000529824
  gene symbol: TIAM2
  hgvsc: ENST00000529824.2:c.1091A>C
  hgvsp: ENSP00000433348.2:p.Lys364Thr
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000356142
  ensembl transcript: ENST00000367174
  gene symbol: TIAM2
  hgvsc: ENST00000367174.2:c.-854A>C
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000407746
  ensembl transcript: ENST00000456144
  gene symbol: TIAM2
  hgvsc: ENST00000456144.1:c.1091A>C
  hgvsp: ENSP00000407746.1:p.Lys364Thr
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000327315
  ensembl transcript: ENST00000318981
  gene symbol: TIAM2
  hgvsc: ENST00000318981.5:c.1091A>C
  hgvsp: ENSP00000327315.5:p.Lys364Thr
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000437188
  ensembl transcript: ENST00000461783
  gene symbol: TIAM2
  hgvsc: ENST00000461783.3:c.1091A>C
  hgvsp: ENSP00000437188.2:p.Lys364Thr
  variant of: http://identifiers.org/hgnc/11806
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26553
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8496
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22629
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1401
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7135
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 752
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1365
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47986
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Lys364Thr
num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
population: East Asian
population: Latino
population: European (Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD

6-155451451-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 155451451
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 155451451
    reference: chr 6
allele count: 1
allele frequency: 8.28349430923941e-6
allele num: 120722
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000327315
  ensembl transcript: ENST00000318981
  gene symbol: TIAM2
  hgvsc: ENST00000318981.5:c.1094C>G
  hgvsp: ENSP00000327315.5:p.Ala365Gly
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000407746
  ensembl transcript: ENST00000456144
  gene symbol: TIAM2
  hgvsc: ENST00000456144.1:c.1094C>G
  hgvsp: ENSP00000407746.1:p.Ala365Gly
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000356142
  ensembl transcript: ENST00000367174
  gene symbol: TIAM2
  hgvsc: ENST00000367174.2:c.-851C>G
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000434901
  ensembl transcript: ENST00000528535
  gene symbol: TIAM2
  hgvsc: ENST00000528535.1:c.1094C>G
  hgvsp: ENSP00000434901.1:p.Ala365Gly
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000433348
  ensembl transcript: ENST00000529824
  gene symbol: TIAM2
  hgvsc: ENST00000529824.2:c.1094C>G
  hgvsp: ENSP00000433348.2:p.Ala365Gly
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000437188
  ensembl transcript: ENST00000461783
  gene symbol: TIAM2
  hgvsc: ENST00000461783.3:c.1094C>G
  hgvsp: ENSP00000437188.2:p.Ala365Gly
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000353528
  ensembl transcript: ENST00000360366
  gene symbol: TIAM2
  hgvsc: ENST00000360366.4:c.1094C>G
  hgvsp: ENSP00000353528.4:p.Ala365Gly
  variant of: http://identifiers.org/hgnc/11806
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1402
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8494
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22609
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26552
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 634
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1366
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 751
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7130
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Ala365Gly
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
population: Latino
reference allele: C
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum

6-155451453-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 155451453
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 155451453
    reference: chr 6
allele count: 1
allele frequency: 8.283357078956959e-6
allele num: 120724
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000434901
  ensembl transcript: ENST00000528535
  gene symbol: TIAM2
  hgvsc: ENST00000528535.1:c.1096T>C
  hgvsp: ENSP00000434901.1:p.Phe366Leu
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000356142
  ensembl transcript: ENST00000367174
  gene symbol: TIAM2
  hgvsc: ENST00000367174.2:c.-849T>C
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000407746
  ensembl transcript: ENST00000456144
  gene symbol: TIAM2
  hgvsc: ENST00000456144.1:c.1096T>C
  hgvsp: ENSP00000407746.1:p.Phe366Leu
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000353528
  ensembl transcript: ENST00000360366
  gene symbol: TIAM2
  hgvsc: ENST00000360366.4:c.1096T>C
  hgvsp: ENSP00000353528.4:p.Phe366Leu
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000437188
  ensembl transcript: ENST00000461783
  gene symbol: TIAM2
  hgvsc: ENST00000461783.3:c.1096T>C
  hgvsp: ENSP00000437188.2:p.Phe366Leu
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000327315
  ensembl transcript: ENST00000318981
  gene symbol: TIAM2
  hgvsc: ENST00000318981.5:c.1096T>C
  hgvsp: ENSP00000327315.5:p.Phe366Leu
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000433348
  ensembl transcript: ENST00000529824
  gene symbol: TIAM2
  hgvsc: ENST00000529824.2:c.1096T>C
  hgvsp: ENSP00000433348.2:p.Phe366Leu
  variant of: http://identifiers.org/hgnc/11806
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1400
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26551
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8492
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22605
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 635
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47973
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Phe366Leu
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: South Asian
population: European (Finnish)
population: Latino
population: Other
reference allele: T
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: QD

6-155451464-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 155451464
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 155451464
    reference: chr 6
allele count: 581
allele frequency: 4.818697541717811e-3
allele num: 120572
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000434901
  ensembl transcript: ENST00000528535
  gene symbol: TIAM2
  hgvsc: ENST00000528535.1:c.1107T>C
  hgvsp: ENST00000528535.1:c.1107T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000353528
  ensembl transcript: ENST00000360366
  gene symbol: TIAM2
  hgvsc: ENST00000360366.4:c.1107T>C
  hgvsp: ENST00000360366.4:c.1107T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000407746
  ensembl transcript: ENST00000456144
  gene symbol: TIAM2
  hgvsc: ENST00000456144.1:c.1107T>C
  hgvsp: ENST00000456144.1:c.1107T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000437188
  ensembl transcript: ENST00000461783
  gene symbol: TIAM2
  hgvsc: ENST00000461783.3:c.1107T>C
  hgvsp: ENST00000461783.3:c.1107T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000327315
  ensembl transcript: ENST00000318981
  gene symbol: TIAM2
  hgvsc: ENST00000318981.5:c.1107T>C
  hgvsp: ENST00000318981.5:c.1107T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000356142
  ensembl transcript: ENST00000367174
  gene symbol: TIAM2
  hgvsc: ENST00000367174.2:c.-838T>C
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000433348
  ensembl transcript: ENST00000529824
  gene symbol: TIAM2
  hgvsc: ENST00000529824.2:c.1107T>C
  hgvsp: ENST00000529824.2:c.1107T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11806
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.75e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 4.75e1
  variant carriers: 41
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 1.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 22330
  bin: 2.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 5.75e1
  variant carriers: 49
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 8420
  bin: 3.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 5.25e1
  variant carriers: 54
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 6.75e1
  variant carriers: 54
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 1.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 1386
  bin: 3.75e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 26380
  bin: 2.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 7.25e1
  variant carriers: 44
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.25e1
  variant carriers: 39
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.75e1
  variant carriers: 37
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 6.25e1
  variant carriers: 43
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 4.25e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 9.75e1
  variant carriers: 75
genotype quality: GenotypeQuality
  all individuals: 214
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47621
  bin: 6.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Asp369Asp
num of homozygotes: 19
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: European (Finnish)
population: Other
population: Latino
reference allele: T
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: QD

6-155451469-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 155451469
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 155451469
    reference: chr 6
allele count: 5
allele frequency: 4.148757861896148e-5
allele num: 120518
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000353528
  ensembl transcript: ENST00000360366
  gene symbol: TIAM2
  hgvsc: ENST00000360366.4:c.1112C>T
  hgvsp: ENSP00000353528.4:p.Ala371Val
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000437188
  ensembl transcript: ENST00000461783
  gene symbol: TIAM2
  hgvsc: ENST00000461783.3:c.1112C>T
  hgvsp: ENSP00000437188.2:p.Ala371Val
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000433348
  ensembl transcript: ENST00000529824
  gene symbol: TIAM2
  hgvsc: ENST00000529824.2:c.1112C>T
  hgvsp: ENSP00000433348.2:p.Ala371Val
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000407746
  ensembl transcript: ENST00000456144
  gene symbol: TIAM2
  hgvsc: ENST00000456144.1:c.1112C>T
  hgvsp: ENSP00000407746.1:p.Ala371Val
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000327315
  ensembl transcript: ENST00000318981
  gene symbol: TIAM2
  hgvsc: ENST00000318981.5:c.1112C>T
  hgvsp: ENSP00000327315.5:p.Ala371Val
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000434901
  ensembl transcript: ENST00000528535
  gene symbol: TIAM2
  hgvsc: ENST00000528535.1:c.1112C>T
  hgvsp: ENSP00000434901.1:p.Ala371Val
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000356142
  ensembl transcript: ENST00000367174
  gene symbol: TIAM2
  hgvsc: ENST00000367174.2:c.-833C>T
  variant of: http://identifiers.org/hgnc/11806
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22313
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8416
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26378
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1391
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 615
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47599
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 563
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1169
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ala371Val
num of homozygotes: 0
population: Latino
population: East Asian
population: South Asian
population: African
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum

6-155451470-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 155451470
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 155451470
    reference: chr 6
allele count: 3
allele frequency: 2.489337338400518e-5
allele num: 120514
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000433348
  ensembl transcript: ENST00000529824
  gene symbol: TIAM2
  hgvsc: ENST00000529824.2:c.1113G>A
  hgvsp: ENST00000529824.2:c.1113G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000407746
  ensembl transcript: ENST00000456144
  gene symbol: TIAM2
  hgvsc: ENST00000456144.1:c.1113G>A
  hgvsp: ENST00000456144.1:c.1113G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000353528
  ensembl transcript: ENST00000360366
  gene symbol: TIAM2
  hgvsc: ENST00000360366.4:c.1113G>A
  hgvsp: ENST00000360366.4:c.1113G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000437188
  ensembl transcript: ENST00000461783
  gene symbol: TIAM2
  hgvsc: ENST00000461783.3:c.1113G>A
  hgvsp: ENST00000461783.3:c.1113G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000356142
  ensembl transcript: ENST00000367174
  gene symbol: TIAM2
  hgvsc: ENST00000367174.2:c.-832G>A
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000327315
  ensembl transcript: ENST00000318981
  gene symbol: TIAM2
  hgvsc: ENST00000318981.5:c.1113G>A
  hgvsp: ENST00000318981.5:c.1113G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000434901
  ensembl transcript: ENST00000528535
  gene symbol: TIAM2
  hgvsc: ENST00000528535.1:c.1113G>A
  hgvsp: ENST00000528535.1:c.1113G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11806
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8410
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26383
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1390
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22319
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1333
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 572
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 614
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7035
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Ala371Ala
num of homozygotes: 0
population: Other
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum

6-155451476-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 155451476
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 155451476
    reference: chr 6
allele count: 1
allele frequency: 8.302475798283047e-6
allele num: 120446
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000353528
  ensembl transcript: ENST00000360366
  gene symbol: TIAM2
  hgvsc: ENST00000360366.4:c.1119G>A
  hgvsp: ENST00000360366.4:c.1119G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000407746
  ensembl transcript: ENST00000456144
  gene symbol: TIAM2
  hgvsc: ENST00000456144.1:c.1119G>A
  hgvsp: ENST00000456144.1:c.1119G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000434901
  ensembl transcript: ENST00000528535
  gene symbol: TIAM2
  hgvsc: ENST00000528535.1:c.1119G>A
  hgvsp: ENST00000528535.1:c.1119G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000327315
  ensembl transcript: ENST00000318981
  gene symbol: TIAM2
  hgvsc: ENST00000318981.5:c.1119G>A
  hgvsp: ENST00000318981.5:c.1119G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000356142
  ensembl transcript: ENST00000367174
  gene symbol: TIAM2
  hgvsc: ENST00000367174.2:c.-826G>A
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000437188
  ensembl transcript: ENST00000461783
  gene symbol: TIAM2
  hgvsc: ENST00000461783.3:c.1119G>A
  hgvsp: ENST00000461783.3:c.1119G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000433348
  ensembl transcript: ENST00000529824
  gene symbol: TIAM2
  hgvsc: ENST00000529824.2:c.1119G>A
  hgvsp: ENST00000529824.2:c.1119G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11806
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 454
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26380
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22289
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1385
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8408
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47582
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 605
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7034
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Lys373Lys
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: FS

6-155451476-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 155451476
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 155451476
    reference: chr 6
allele count: 580
allele frequency: 4.815435963004168e-3
allele num: 120446
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000407746
  ensembl transcript: ENST00000456144
  gene symbol: TIAM2
  hgvsc: ENST00000456144.1:c.1119G>T
  hgvsp: ENSP00000407746.1:p.Lys373Asn
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000437188
  ensembl transcript: ENST00000461783
  gene symbol: TIAM2
  hgvsc: ENST00000461783.3:c.1119G>T
  hgvsp: ENSP00000437188.2:p.Lys373Asn
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000327315
  ensembl transcript: ENST00000318981
  gene symbol: TIAM2
  hgvsc: ENST00000318981.5:c.1119G>T
  hgvsp: ENSP00000327315.5:p.Lys373Asn
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000356142
  ensembl transcript: ENST00000367174
  gene symbol: TIAM2
  hgvsc: ENST00000367174.2:c.-826G>T
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000434901
  ensembl transcript: ENST00000528535
  gene symbol: TIAM2
  hgvsc: ENST00000528535.1:c.1119G>T
  hgvsp: ENSP00000434901.1:p.Lys373Asn
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000353528
  ensembl transcript: ENST00000360366
  gene symbol: TIAM2
  hgvsc: ENST00000360366.4:c.1119G>T
  hgvsp: ENSP00000353528.4:p.Lys373Asn
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000433348
  ensembl transcript: ENST00000529824
  gene symbol: TIAM2
  hgvsc: ENST00000529824.2:c.1119G>T
  hgvsp: ENSP00000433348.2:p.Lys373Asn
  variant of: http://identifiers.org/hgnc/11806
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 1.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 8408
  bin: 3.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 1.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 5.25e1
  variant carriers: 47
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 4.75e1
  variant carriers: 44
genotype depth: GenotypeDepth
  all individuals: 22289
  bin: 2.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.25e1
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 1385
  bin: 3.75e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 4.25e1
  variant carriers: 36
genotype depth: GenotypeDepth
  all individuals: 26380
  bin: 2.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 5.75e1
  variant carriers: 51
genotype depth: GenotypeDepth
  all individuals: 454
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.75e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 6.25e1
  variant carriers: 41
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 6.75e1
  variant carriers: 47
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 7.25e1
  variant carriers: 42
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.75e1
  variant carriers: 38
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 9.25e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 9.75e1
  variant carriers: 69
genotype quality: GenotypeQuality
  all individuals: 258
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1325
  bin: 7.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7034
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47582
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 605
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Lys373Asn
num of homozygotes: 20
population: Other
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: European (Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: BaseQRankSum

6-155451477-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 155451477
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 155451477
    reference: chr 6
allele count: 1
allele frequency: 8.303854649328218e-6
allele num: 120426
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000356142
  ensembl transcript: ENST00000367174
  gene symbol: TIAM2
  hgvsc: ENST00000367174.2:c.-825G>A
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000353528
  ensembl transcript: ENST00000360366
  gene symbol: TIAM2
  hgvsc: ENST00000360366.4:c.1120G>A
  hgvsp: ENSP00000353528.4:p.Asp374Asn
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000437188
  ensembl transcript: ENST00000461783
  gene symbol: TIAM2
  hgvsc: ENST00000461783.3:c.1120G>A
  hgvsp: ENSP00000437188.2:p.Asp374Asn
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000327315
  ensembl transcript: ENST00000318981
  gene symbol: TIAM2
  hgvsc: ENST00000318981.5:c.1120G>A
  hgvsp: ENSP00000327315.5:p.Asp374Asn
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000434901
  ensembl transcript: ENST00000528535
  gene symbol: TIAM2
  hgvsc: ENST00000528535.1:c.1120G>A
  hgvsp: ENSP00000434901.1:p.Asp374Asn
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000407746
  ensembl transcript: ENST00000456144
  gene symbol: TIAM2
  hgvsc: ENST00000456144.1:c.1120G>A
  hgvsp: ENSP00000407746.1:p.Asp374Asn
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000433348
  ensembl transcript: ENST00000529824
  gene symbol: TIAM2
  hgvsc: ENST00000529824.2:c.1120G>A
  hgvsp: ENSP00000433348.2:p.Asp374Asn
  variant of: http://identifiers.org/hgnc/11806
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1396
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26656
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22356
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8513
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 609
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 630
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1349
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47952
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Asp374Asn
num of homozygotes: 0
population: South Asian
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum

http://identifiers.org/exac.variant/6-155451479-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 155451479
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 155451479
    reference: chr 6
allele count: 4
allele frequency: 3.321872871925191e-5
allele num: 120414
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000327315
  ensembl transcript: ENST00000318981
  gene symbol: TIAM2
  hgvsc: ENST00000318981.5:c.1122C>A
  hgvsp: ENSP00000327315.5:p.Asp374Glu
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000353528
  ensembl transcript: ENST00000360366
  gene symbol: TIAM2
  hgvsc: ENST00000360366.4:c.1122C>A
  hgvsp: ENSP00000353528.4:p.Asp374Glu
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000433348
  ensembl transcript: ENST00000529824
  gene symbol: TIAM2
  hgvsc: ENST00000529824.2:c.1122C>A
  hgvsp: ENSP00000433348.2:p.Asp374Glu
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000434901
  ensembl transcript: ENST00000528535
  gene symbol: TIAM2
  hgvsc: ENST00000528535.1:c.1122C>A
  hgvsp: ENSP00000434901.1:p.Asp374Glu
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000407746
  ensembl transcript: ENST00000456144
  gene symbol: TIAM2
  hgvsc: ENST00000456144.1:c.1122C>A
  hgvsp: ENSP00000407746.1:p.Asp374Glu
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000437188
  ensembl transcript: ENST00000461783
  gene symbol: TIAM2
  hgvsc: ENST00000461783.3:c.1122C>A
  hgvsp: ENSP00000437188.2:p.Asp374Glu
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000356142
  ensembl transcript: ENST00000367174
  gene symbol: TIAM2
  hgvsc: ENST00000367174.2:c.-823C>A
  variant of: http://identifiers.org/hgnc/11806
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22363
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8510
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26655
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1394
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 213
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 639
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 689
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 1350
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Asp374Glu
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
population: Other
reference allele: C
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/6-155451490-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 155451490
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 155451490
    reference: chr 6
allele count: 1
allele frequency: 8.313519445321983e-6
allele num: 120286
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000407746
  ensembl transcript: ENST00000456144
  gene symbol: TIAM2
  hgvsc: ENST00000456144.1:c.1133C>A
  hgvsp: ENSP00000407746.1:p.Ala378Asp
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000353528
  ensembl transcript: ENST00000360366
  gene symbol: TIAM2
  hgvsc: ENST00000360366.4:c.1133C>A
  hgvsp: ENSP00000353528.4:p.Ala378Asp
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000434901
  ensembl transcript: ENST00000528535
  gene symbol: TIAM2
  hgvsc: ENST00000528535.1:c.1133C>A
  hgvsp: ENSP00000434901.1:p.Ala378Asp
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000327315
  ensembl transcript: ENST00000318981
  gene symbol: TIAM2
  hgvsc: ENST00000318981.5:c.1133C>A
  hgvsp: ENSP00000327315.5:p.Ala378Asp
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000356142
  ensembl transcript: ENST00000367174
  gene symbol: TIAM2
  hgvsc: ENST00000367174.2:c.-812C>A
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000437188
  ensembl transcript: ENST00000461783
  gene symbol: TIAM2
  hgvsc: ENST00000461783.3:c.1133C>A
  hgvsp: ENSP00000437188.2:p.Ala378Asp
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000433348
  ensembl transcript: ENST00000529824
  gene symbol: TIAM2
  hgvsc: ENST00000529824.2:c.1133C>A
  hgvsp: ENSP00000433348.2:p.Ala378Asp
  variant of: http://identifiers.org/hgnc/11806
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8501
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22296
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26642
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1379
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 263
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 211
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 684
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ala378Asp
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
reference allele: C
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD

6-155451498-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 155451498
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 155451498
    reference: chr 6
allele count: 1
allele frequency: 8.322375538873816e-6
allele num: 120158
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000407746
  ensembl transcript: ENST00000456144
  gene symbol: TIAM2
  hgvsc: ENST00000456144.1:c.1141C>T
  hgvsp: ENSP00000407746.1:p.Arg381Ter
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000353528
  ensembl transcript: ENST00000360366
  gene symbol: TIAM2
  hgvsc: ENST00000360366.4:c.1141C>T
  hgvsp: ENSP00000353528.4:p.Arg381Ter
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000437188
  ensembl transcript: ENST00000461783
  gene symbol: TIAM2
  hgvsc: ENST00000461783.3:c.1141C>T
  hgvsp: ENSP00000437188.2:p.Arg381Ter
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000433348
  ensembl transcript: ENST00000529824
  gene symbol: TIAM2
  hgvsc: ENST00000529824.2:c.1141C>T
  hgvsp: ENSP00000433348.2:p.Arg381Ter
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000434901
  ensembl transcript: ENST00000528535
  gene symbol: TIAM2
  hgvsc: ENST00000528535.1:c.1141C>T
  hgvsp: ENSP00000434901.1:p.Arg381Ter
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000327315
  ensembl transcript: ENST00000318981
  gene symbol: TIAM2
  hgvsc: ENST00000318981.5:c.1141C>T
  hgvsp: ENSP00000327315.5:p.Arg381Ter
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000356142
  ensembl transcript: ENST00000367174
  gene symbol: TIAM2
  hgvsc: ENST00000367174.2:c.-804C>T
  variant of: http://identifiers.org/hgnc/11806
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22284
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26599
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1379
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8482
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 600
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 766
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 680
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Arg381Ter
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: African
population: Latino
population: Other
population: East Asian
reference allele: C
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD

6-155451499-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 155451499
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 155451499
    reference: chr 6
allele count: 2
allele frequency: 1.664475107774763e-5
allele num: 120158
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000356142
  ensembl transcript: ENST00000367174
  gene symbol: TIAM2
  hgvsc: ENST00000367174.2:c.-803G>A
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000434901
  ensembl transcript: ENST00000528535
  gene symbol: TIAM2
  hgvsc: ENST00000528535.1:c.1142G>A
  hgvsp: ENSP00000434901.1:p.Arg381Gln
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000407746
  ensembl transcript: ENST00000456144
  gene symbol: TIAM2
  hgvsc: ENST00000456144.1:c.1142G>A
  hgvsp: ENSP00000407746.1:p.Arg381Gln
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000437188
  ensembl transcript: ENST00000461783
  gene symbol: TIAM2
  hgvsc: ENST00000461783.3:c.1142G>A
  hgvsp: ENSP00000437188.2:p.Arg381Gln
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000353528
  ensembl transcript: ENST00000360366
  gene symbol: TIAM2
  hgvsc: ENST00000360366.4:c.1142G>A
  hgvsp: ENSP00000353528.4:p.Arg381Gln
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000327315
  ensembl transcript: ENST00000318981
  gene symbol: TIAM2
  hgvsc: ENST00000318981.5:c.1142G>A
  hgvsp: ENSP00000327315.5:p.Arg381Gln
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000433348
  ensembl transcript: ENST00000529824
  gene symbol: TIAM2
  hgvsc: ENST00000529824.2:c.1142G>A
  hgvsp: ENSP00000433348.2:p.Arg381Gln
  variant of: http://identifiers.org/hgnc/11806
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8470
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1373
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22289
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26614
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1474
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 210
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7073
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Arg381Gln
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Other
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP

6-155451501-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 155451501
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 155451501
    reference: chr 6
allele count: 2
allele frequency: 1.66497394315779e-5
allele num: 120122
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000353528
  ensembl transcript: ENST00000360366
  gene symbol: TIAM2
  hgvsc: ENST00000360366.4:c.1144C>T
  hgvsp: ENSP00000353528.4:p.Arg382Trp
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000437188
  ensembl transcript: ENST00000461783
  gene symbol: TIAM2
  hgvsc: ENST00000461783.3:c.1144C>T
  hgvsp: ENSP00000437188.2:p.Arg382Trp
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000356142
  ensembl transcript: ENST00000367174
  gene symbol: TIAM2
  hgvsc: ENST00000367174.2:c.-801C>T
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000327315
  ensembl transcript: ENST00000318981
  gene symbol: TIAM2
  hgvsc: ENST00000318981.5:c.1144C>T
  hgvsp: ENSP00000327315.5:p.Arg382Trp
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000407746
  ensembl transcript: ENST00000456144
  gene symbol: TIAM2
  hgvsc: ENST00000456144.1:c.1144C>T
  hgvsp: ENSP00000407746.1:p.Arg382Trp
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000434901
  ensembl transcript: ENST00000528535
  gene symbol: TIAM2
  hgvsc: ENST00000528535.1:c.1144C>T
  hgvsp: ENSP00000434901.1:p.Arg382Trp
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000433348
  ensembl transcript: ENST00000529824
  gene symbol: TIAM2
  hgvsc: ENST00000529824.2:c.1144C>T
  hgvsp: ENSP00000433348.2:p.Arg382Trp
  variant of: http://identifiers.org/hgnc/11806
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1370
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8463
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22284
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 597
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26605
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 209
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 794
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1340
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7074
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 594
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Arg382Trp
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: African
population: East Asian
population: South Asian
reference allele: C
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD

6-155451502-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 155451502
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 155451502
    reference: chr 6
allele count: 10
allele frequency: 8.326256015719971e-5
allele num: 120102
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000327315
  ensembl transcript: ENST00000318981
  gene symbol: TIAM2
  hgvsc: ENST00000318981.5:c.1145G>A
  hgvsp: ENSP00000327315.5:p.Arg382Gln
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000434901
  ensembl transcript: ENST00000528535
  gene symbol: TIAM2
  hgvsc: ENST00000528535.1:c.1145G>A
  hgvsp: ENSP00000434901.1:p.Arg382Gln
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000433348
  ensembl transcript: ENST00000529824
  gene symbol: TIAM2
  hgvsc: ENST00000529824.2:c.1145G>A
  hgvsp: ENSP00000433348.2:p.Arg382Gln
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000437188
  ensembl transcript: ENST00000461783
  gene symbol: TIAM2
  hgvsc: ENST00000461783.3:c.1145G>A
  hgvsp: ENSP00000437188.2:p.Arg382Gln
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000407746
  ensembl transcript: ENST00000456144
  gene symbol: TIAM2
  hgvsc: ENST00000456144.1:c.1145G>A
  hgvsp: ENSP00000407746.1:p.Arg382Gln
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000353528
  ensembl transcript: ENST00000360366
  gene symbol: TIAM2
  hgvsc: ENST00000360366.4:c.1145G>A
  hgvsp: ENSP00000353528.4:p.Arg382Gln
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000356142
  ensembl transcript: ENST00000367174
  gene symbol: TIAM2
  hgvsc: ENST00000367174.2:c.-800G>A
  variant of: http://identifiers.org/hgnc/11806
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1368
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8463
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26596
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22286
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 802
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47811
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 260
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Arg382Gln
num of homozygotes: 0
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Latino
population: East Asian
population: African
reference allele: G
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ

6-155451503-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 155451503
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 155451503
    reference: chr 6
allele count: 1
allele frequency: 8.326949338840222e-6
allele num: 120092
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000353528
  ensembl transcript: ENST00000360366
  gene symbol: TIAM2
  hgvsc: ENST00000360366.4:c.1146G>A
  hgvsp: ENST00000360366.4:c.1146G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000327315
  ensembl transcript: ENST00000318981
  gene symbol: TIAM2
  hgvsc: ENST00000318981.5:c.1146G>A
  hgvsp: ENST00000318981.5:c.1146G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000437188
  ensembl transcript: ENST00000461783
  gene symbol: TIAM2
  hgvsc: ENST00000461783.3:c.1146G>A
  hgvsp: ENST00000461783.3:c.1146G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000433348
  ensembl transcript: ENST00000529824
  gene symbol: TIAM2
  hgvsc: ENST00000529824.2:c.1146G>A
  hgvsp: ENST00000529824.2:c.1146G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000434901
  ensembl transcript: ENST00000528535
  gene symbol: TIAM2
  hgvsc: ENST00000528535.1:c.1146G>A
  hgvsp: ENST00000528535.1:c.1146G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000407746
  ensembl transcript: ENST00000456144
  gene symbol: TIAM2
  hgvsc: ENST00000456144.1:c.1146G>A
  hgvsp: ENST00000456144.1:c.1146G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000356142
  ensembl transcript: ENST00000367174
  gene symbol: TIAM2
  hgvsc: ENST00000367174.2:c.-799G>A
  variant of: http://identifiers.org/hgnc/11806
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1367
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22280
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8459
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26597
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7074
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 595
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 812
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Arg382Arg
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: African
population: East Asian
reference allele: G
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum

6-155451503-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 155451503
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 155451503
    reference: chr 6
allele count: 1
allele frequency: 8.326949338840222e-6
allele num: 120092
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000356142
  ensembl transcript: ENST00000367174
  gene symbol: TIAM2
  hgvsc: ENST00000367174.2:c.-799G>C
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000433348
  ensembl transcript: ENST00000529824
  gene symbol: TIAM2
  hgvsc: ENST00000529824.2:c.1146G>C
  hgvsp: ENST00000529824.2:c.1146G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000327315
  ensembl transcript: ENST00000318981
  gene symbol: TIAM2
  hgvsc: ENST00000318981.5:c.1146G>C
  hgvsp: ENST00000318981.5:c.1146G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000437188
  ensembl transcript: ENST00000461783
  gene symbol: TIAM2
  hgvsc: ENST00000461783.3:c.1146G>C
  hgvsp: ENST00000461783.3:c.1146G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000353528
  ensembl transcript: ENST00000360366
  gene symbol: TIAM2
  hgvsc: ENST00000360366.4:c.1146G>C
  hgvsp: ENST00000360366.4:c.1146G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000407746
  ensembl transcript: ENST00000456144
  gene symbol: TIAM2
  hgvsc: ENST00000456144.1:c.1146G>C
  hgvsp: ENST00000456144.1:c.1146G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000434901
  ensembl transcript: ENST00000528535
  gene symbol: TIAM2
  hgvsc: ENST00000528535.1:c.1146G>C
  hgvsp: ENST00000528535.1:c.1146G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11806
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26597
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1367
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8459
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22280
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1468
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 812
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Arg382Arg
num of homozygotes: 0
population: Latino
population: Other
population: South Asian
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: DP

6-155451506-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 155451506
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 155451506
    reference: chr 6
allele count: 14
allele frequency: 1.166413943645543e-4
allele num: 120026
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000327315
  ensembl transcript: ENST00000318981
  gene symbol: TIAM2
  hgvsc: ENST00000318981.5:c.1149C>G
  hgvsp: ENSP00000327315.5:p.Ile383Met
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000433348
  ensembl transcript: ENST00000529824
  gene symbol: TIAM2
  hgvsc: ENST00000529824.2:c.1149C>G
  hgvsp: ENSP00000433348.2:p.Ile383Met
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000434901
  ensembl transcript: ENST00000528535
  gene symbol: TIAM2
  hgvsc: ENST00000528535.1:c.1149C>G
  hgvsp: ENSP00000434901.1:p.Ile383Met
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000407746
  ensembl transcript: ENST00000456144
  gene symbol: TIAM2
  hgvsc: ENST00000456144.1:c.1149C>G
  hgvsp: ENSP00000407746.1:p.Ile383Met
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000437188
  ensembl transcript: ENST00000461783
  gene symbol: TIAM2
  hgvsc: ENST00000461783.3:c.1149C>G
  hgvsp: ENSP00000437188.2:p.Ile383Met
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000353528
  ensembl transcript: ENST00000360366
  gene symbol: TIAM2
  hgvsc: ENST00000360366.4:c.1149C>G
  hgvsp: ENSP00000353528.4:p.Ile383Met
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000356142
  ensembl transcript: ENST00000367174
  gene symbol: TIAM2
  hgvsc: ENST00000367174.2:c.-796C>G
  variant of: http://identifiers.org/hgnc/11806
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22238
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1367
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26570
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8450
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 4.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 5.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 7065
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1328
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 858
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ile383Met
num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff

6-155451509-T-TGACTGGAC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 155451509
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 155451517
    reference: chr 6
allele count: 1
allele frequency: 8.339448929214757e-6
allele num: 119912
alternate allele: TGACTGGAC
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000353528
  ensembl transcript: ENST00000360366
  gene symbol: TIAM2
  hgvsp: ENSP00000353528.4:p.Gly388ThrfsTer32
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000327315
  ensembl transcript: ENST00000318981
  gene symbol: TIAM2
  hgvsp: ENSP00000327315.5:p.Gly388ThrfsTer32
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000356142
  ensembl transcript: ENST00000367174
  gene symbol: TIAM2
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000407746
  ensembl transcript: ENST00000456144
  gene symbol: TIAM2
  hgvsp: ENSP00000407746.1:p.Gly388ThrfsTer32
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000433348
  ensembl transcript: ENST00000529824
  gene symbol: TIAM2
  hgvsp: ENSP00000433348.2:p.Gly388ThrfsTer32
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000437188
  ensembl transcript: ENST00000461783
  gene symbol: TIAM2
  hgvsp: ENSP00000437188.2:p.Gly388ThrfsTer32
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000434901
  ensembl transcript: ENST00000528535
  gene symbol: TIAM2
  hgvsp: ENSP00000434901.1:p.Gly388ThrfsTer32
  variant of: http://identifiers.org/hgnc/11806
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 26535
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22192
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 520
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 692
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1361
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8442
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47658
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1328
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 658
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7046
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Gly388ThrfsTer32
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Latino
population: East Asian
population: European (Finnish)
population: Other
population: African
reference allele: T
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP

6-155451513-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 155451513
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 155451513
    reference: chr 6
allele count: 2
allele frequency: 1.669058984544514e-5
allele num: 119828
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000353528
  ensembl transcript: ENST00000360366
  gene symbol: TIAM2
  hgvsc: ENST00000360366.4:c.1156T>C
  hgvsp: ENSP00000353528.4:p.Trp386Arg
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000407746
  ensembl transcript: ENST00000456144
  gene symbol: TIAM2
  hgvsc: ENST00000456144.1:c.1156T>C
  hgvsp: ENSP00000407746.1:p.Trp386Arg
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000437188
  ensembl transcript: ENST00000461783
  gene symbol: TIAM2
  hgvsc: ENST00000461783.3:c.1156T>C
  hgvsp: ENSP00000437188.2:p.Trp386Arg
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000433348
  ensembl transcript: ENST00000529824
  gene symbol: TIAM2
  hgvsc: ENST00000529824.2:c.1156T>C
  hgvsp: ENSP00000433348.2:p.Trp386Arg
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000327315
  ensembl transcript: ENST00000318981
  gene symbol: TIAM2
  hgvsc: ENST00000318981.5:c.1156T>C
  hgvsp: ENSP00000327315.5:p.Trp386Arg
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000434901
  ensembl transcript: ENST00000528535
  gene symbol: TIAM2
  hgvsc: ENST00000528535.1:c.1156T>C
  hgvsp: ENSP00000434901.1:p.Trp386Arg
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000356142
  ensembl transcript: ENST00000367174
  gene symbol: TIAM2
  hgvsc: ENST00000367174.2:c.-789T>C
  variant of: http://identifiers.org/hgnc/11806
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 584
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1349
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8417
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26509
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 732
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22139
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7026
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 580
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 135
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Trp386Arg
num of homozygotes: 0
population: South Asian
population: Other
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
reference allele: T
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum

6-155451517-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 155451517
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 155451517
    reference: chr 6
allele count: 3
allele frequency: 2.507648327398566e-5
allele num: 119634
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000433348
  ensembl transcript: ENST00000529824
  gene symbol: TIAM2
  hgvsc: ENST00000529824.2:c.1160C>T
  hgvsp: ENSP00000433348.2:p.Thr387Met
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000327315
  ensembl transcript: ENST00000318981
  gene symbol: TIAM2
  hgvsc: ENST00000318981.5:c.1160C>T
  hgvsp: ENSP00000327315.5:p.Thr387Met
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000437188
  ensembl transcript: ENST00000461783
  gene symbol: TIAM2
  hgvsc: ENST00000461783.3:c.1160C>T
  hgvsp: ENSP00000437188.2:p.Thr387Met
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000353528
  ensembl transcript: ENST00000360366
  gene symbol: TIAM2
  hgvsc: ENST00000360366.4:c.1160C>T
  hgvsp: ENSP00000353528.4:p.Thr387Met
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000407746
  ensembl transcript: ENST00000456144
  gene symbol: TIAM2
  hgvsc: ENST00000456144.1:c.1160C>T
  hgvsp: ENSP00000407746.1:p.Thr387Met
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000356142
  ensembl transcript: ENST00000367174
  gene symbol: TIAM2
  hgvsc: ENST00000367174.2:c.-785C>T
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000434901
  ensembl transcript: ENST00000528535
  gene symbol: TIAM2
  hgvsc: ENST00000528535.1:c.1160C>T
  hgvsp: ENSP00000434901.1:p.Thr387Met
  variant of: http://identifiers.org/hgnc/11806
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1347
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 815
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26423
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 672
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22072
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8377
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6970
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47324
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 145
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1173
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Thr387Met
num of homozygotes: 0
population: Other
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: African
population: Latino
population: European (Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: QD

6-155451518-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 155451518
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 155451518
    reference: chr 6
allele count: 1
allele frequency: 8.360644772924887e-6
allele num: 119608
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000434901
  ensembl transcript: ENST00000528535
  gene symbol: TIAM2
  hgvsc: ENST00000528535.1:c.1161G>A
  hgvsp: ENST00000528535.1:c.1161G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000327315
  ensembl transcript: ENST00000318981
  gene symbol: TIAM2
  hgvsc: ENST00000318981.5:c.1161G>A
  hgvsp: ENST00000318981.5:c.1161G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000437188
  ensembl transcript: ENST00000461783
  gene symbol: TIAM2
  hgvsc: ENST00000461783.3:c.1161G>A
  hgvsp: ENST00000461783.3:c.1161G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000407746
  ensembl transcript: ENST00000456144
  gene symbol: TIAM2
  hgvsc: ENST00000456144.1:c.1161G>A
  hgvsp: ENST00000456144.1:c.1161G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000353528
  ensembl transcript: ENST00000360366
  gene symbol: TIAM2
  hgvsc: ENST00000360366.4:c.1161G>A
  hgvsp: ENST00000360366.4:c.1161G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000433348
  ensembl transcript: ENST00000529824
  gene symbol: TIAM2
  hgvsc: ENST00000529824.2:c.1161G>A
  hgvsp: ENST00000529824.2:c.1161G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000356142
  ensembl transcript: ENST00000367174
  gene symbol: TIAM2
  hgvsc: ENST00000367174.2:c.-784G>A
  variant of: http://identifiers.org/hgnc/11806
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 665
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22087
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8349
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 824
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1343
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26443
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 255
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47416
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1435
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1194
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 576
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Thr387Thr
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: African
population: Other
population: Latino
population: South Asian
reference allele: G
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD

http://identifiers.org/exac.variant/6-155451522-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 155451522
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 155451522
    reference: chr 6
allele count: 11
allele frequency: 9.222926518429084e-5
allele num: 119268
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000356142
  ensembl transcript: ENST00000367174
  gene symbol: TIAM2
  hgvsc: ENST00000367174.2:c.-780A>C
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000437188
  ensembl transcript: ENST00000461783
  gene symbol: TIAM2
  hgvsc: ENST00000461783.3:c.1165A>C
  hgvsp: ENSP00000437188.2:p.Ser389Arg
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000327315
  ensembl transcript: ENST00000318981
  gene symbol: TIAM2
  hgvsc: ENST00000318981.5:c.1165A>C
  hgvsp: ENSP00000327315.5:p.Ser389Arg
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000353528
  ensembl transcript: ENST00000360366
  gene symbol: TIAM2
  hgvsc: ENST00000360366.4:c.1165A>C
  hgvsp: ENSP00000353528.4:p.Ser389Arg
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000433348
  ensembl transcript: ENST00000529824
  gene symbol: TIAM2
  hgvsc: ENST00000529824.2:c.1165A>C
  hgvsp: ENSP00000433348.2:p.Ser389Arg
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000407746
  ensembl transcript: ENST00000456144
  gene symbol: TIAM2
  hgvsc: ENST00000456144.1:c.1165A>C
  hgvsp: ENSP00000407746.1:p.Ser389Arg
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000434901
  ensembl transcript: ENST00000528535
  gene symbol: TIAM2
  hgvsc: ENST00000528535.1:c.1165A>C
  hgvsp: ENSP00000434901.1:p.Ser389Arg
  variant of: http://identifiers.org/hgnc/11806
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8238
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 26291
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 861
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21963
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 992
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1327
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 5.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 655
  bin: 9.75e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1414
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 173
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 254
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Ser389Arg
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
population: Other
population: European (Finnish)
population: South Asian
reference allele: A
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: QD
site quality: InbreedingCoeff

6-155451533-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 155451533
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 155451533
    reference: chr 6
allele count: 1
allele frequency: 8.474863554696769e-6
allele num: 117996
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000433348
  ensembl transcript: ENST00000529824
  gene symbol: TIAM2
  hgvsc: ENST00000529824.2:c.1176G>A
  hgvsp: ENST00000529824.2:c.1176G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000327315
  ensembl transcript: ENST00000318981
  gene symbol: TIAM2
  hgvsc: ENST00000318981.5:c.1176G>A
  hgvsp: ENST00000318981.5:c.1176G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000434901
  ensembl transcript: ENST00000528535
  gene symbol: TIAM2
  hgvsc: ENST00000528535.1:c.1176G>A
  hgvsp: ENST00000528535.1:c.1176G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000437188
  ensembl transcript: ENST00000461783
  gene symbol: TIAM2
  hgvsc: ENST00000461783.3:c.1176G>A
  hgvsp: ENST00000461783.3:c.1176G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000353528
  ensembl transcript: ENST00000360366
  gene symbol: TIAM2
  hgvsc: ENST00000360366.4:c.1176G>A
  hgvsp: ENST00000360366.4:c.1176G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000407746
  ensembl transcript: ENST00000456144
  gene symbol: TIAM2
  hgvsc: ENST00000456144.1:c.1176G>A
  hgvsp: ENST00000456144.1:c.1176G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000356142
  ensembl transcript: ENST00000367174
  gene symbol: TIAM2
  hgvsc: ENST00000367174.2:c.-769G>A
  variant of: http://identifiers.org/hgnc/11806
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7796
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21463
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1214
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1593
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1788
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25629
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1199
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 318
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 198
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 550
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 338
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 176
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Arg392Arg
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
population: Latino
population: Other
population: European (Finnish)
reference allele: G
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: MQ

6-155451539-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 155451539
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 155451539
    reference: chr 6
allele count: 1
allele frequency: 8.520500323779012e-6
allele num: 117364
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000437188
  ensembl transcript: ENST00000461783
  gene symbol: TIAM2
  hgvsc: ENST00000461783.3:c.1182A>G
  hgvsp: ENST00000461783.3:c.1182A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000353528
  ensembl transcript: ENST00000360366
  gene symbol: TIAM2
  hgvsc: ENST00000360366.4:c.1182A>G
  hgvsp: ENST00000360366.4:c.1182A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000356142
  ensembl transcript: ENST00000367174
  gene symbol: TIAM2
  hgvsc: ENST00000367174.2:c.-763A>G
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000407746
  ensembl transcript: ENST00000456144
  gene symbol: TIAM2
  hgvsc: ENST00000456144.1:c.1182A>G
  hgvsp: ENST00000456144.1:c.1182A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000327315
  ensembl transcript: ENST00000318981
  gene symbol: TIAM2
  hgvsc: ENST00000318981.5:c.1182A>G
  hgvsp: ENST00000318981.5:c.1182A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000434901
  ensembl transcript: ENST00000528535
  gene symbol: TIAM2
  hgvsc: ENST00000528535.1:c.1182A>G
  hgvsp: ENST00000528535.1:c.1182A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000433348
  ensembl transcript: ENST00000529824
  gene symbol: TIAM2
  hgvsc: ENST00000529824.2:c.1182A>G
  hgvsp: ENST00000529824.2:c.1182A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11806
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1189
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21281
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25185
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7573
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1894
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2266
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 202
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 439
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45134
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 197
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Lys394Lys
num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: A
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum

6-155451545-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 155451545
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 155451545
    reference: chr 6
allele count: 2
allele frequency: 1.729864378632715e-5
allele num: 115616
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000437188
  ensembl transcript: ENST00000461783
  gene symbol: TIAM2
  hgvsc: ENST00000461783.3:c.1188A>G
  hgvsp: ENST00000461783.3:c.1188A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000407746
  ensembl transcript: ENST00000456144
  gene symbol: TIAM2
  hgvsc: ENST00000456144.1:c.1188A>G
  hgvsp: ENST00000456144.1:c.1188A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000433348
  ensembl transcript: ENST00000529824
  gene symbol: TIAM2
  hgvsc: ENST00000529824.2:c.1188A>G
  hgvsp: ENST00000529824.2:c.1188A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000356142
  ensembl transcript: ENST00000367174
  gene symbol: TIAM2
  hgvsc: ENST00000367174.2:c.-757A>G
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000434901
  ensembl transcript: ENST00000528535
  gene symbol: TIAM2
  hgvsc: ENST00000528535.1:c.1188A>G
  hgvsp: ENST00000528535.1:c.1188A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000327315
  ensembl transcript: ENST00000318981
  gene symbol: TIAM2
  hgvsc: ENST00000318981.5:c.1188A>G
  hgvsp: ENST00000318981.5:c.1188A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000353528
  ensembl transcript: ENST00000360366
  gene symbol: TIAM2
  hgvsc: ENST00000360366.4:c.1188A>G
  hgvsp: ENST00000360366.4:c.1188A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11806
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7177
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3643
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2684
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20390
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 818
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1148
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23969
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 190
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 532
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42746
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 316
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5211
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 329
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 686
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Lys396Lys
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Latino
population: East Asian
population: African
population: Other
population: European (Finnish)
reference allele: A
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP

6-155451559-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 155451559
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 155451559
    reference: chr 6
allele count: 5
allele frequency: 4.516467038823551e-5
allele num: 110706
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000327315
  ensembl transcript: ENST00000318981
  gene symbol: TIAM2
  hgvsc: ENST00000318981.5:c.1194+8T>C
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000433348
  ensembl transcript: ENST00000529824
  gene symbol: TIAM2
  hgvsc: ENST00000529824.2:c.1194+8T>C
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000437188
  ensembl transcript: ENST00000461783
  gene symbol: TIAM2
  hgvsc: ENST00000461783.3:c.1194+8T>C
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000353528
  ensembl transcript: ENST00000360366
  gene symbol: TIAM2
  hgvsc: ENST00000360366.4:c.1194+8T>C
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000407746
  ensembl transcript: ENST00000456144
  gene symbol: TIAM2
  hgvsc: ENST00000456144.1:c.1194+8T>C
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000434901
  ensembl transcript: ENST00000528535
  gene symbol: TIAM2
  hgvsc: ENST00000528535.1:c.1194+8T>C
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000356142
  ensembl transcript: ENST00000367174
  gene symbol: TIAM2
  hgvsc: ENST00000367174.2:c.-751+8T>C
  variant of: http://identifiers.org/hgnc/11806
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 985
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17213
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5776
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8673
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20185
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4777
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1941
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1852
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 219
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 502
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 239
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35514
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 377
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1850
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 915
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 2.5e0
  variant carriers: 0
hgvs: c.1194+8T>C
num of homozygotes: 0
population: South Asian
population: East Asian
population: Other
population: European (Non-Finnish)
population: African
population: Latino
population: European (Finnish)
reference allele: T
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP

6-155451573-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 155451573
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 155451573
    reference: chr 6
allele count: 1
allele frequency: 9.507510933637574e-6
allele num: 105180
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000327315
  ensembl transcript: ENST00000318981
  gene symbol: TIAM2
  hgvsc: ENST00000318981.5:c.1194+22G>A
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000433348
  ensembl transcript: ENST00000529824
  gene symbol: TIAM2
  hgvsc: ENST00000529824.2:c.1194+22G>A
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000434901
  ensembl transcript: ENST00000528535
  gene symbol: TIAM2
  hgvsc: ENST00000528535.1:c.1194+22G>A
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000407746
  ensembl transcript: ENST00000456144
  gene symbol: TIAM2
  hgvsc: ENST00000456144.1:c.1194+22G>A
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000356142
  ensembl transcript: ENST00000367174
  gene symbol: TIAM2
  hgvsc: ENST00000367174.2:c.-751+22G>A
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000353528
  ensembl transcript: ENST00000360366
  gene symbol: TIAM2
  hgvsc: ENST00000360366.4:c.1194+22G>A
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000437188
  ensembl transcript: ENST00000461783
  gene symbol: TIAM2
  hgvsc: ENST00000461783.3:c.1194+22G>A
  variant of: http://identifiers.org/hgnc/11806
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14023
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13129
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 761
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15934
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1246
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3546
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6590
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4787
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2328
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 352
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4484
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 842
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 584
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 449
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 410
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1408
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15076
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: Other
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: G
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD

6-155451583-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 155451583
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 155451583
    reference: chr 6
allele count: 1
allele frequency: 9.957580706191624e-6
allele num: 100426
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000327315
  ensembl transcript: ENST00000318981
  gene symbol: TIAM2
  hgvsc: ENST00000318981.5:c.1194+32C>T
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000407746
  ensembl transcript: ENST00000456144
  gene symbol: TIAM2
  hgvsc: ENST00000456144.1:c.1194+32C>T
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000353528
  ensembl transcript: ENST00000360366
  gene symbol: TIAM2
  hgvsc: ENST00000360366.4:c.1194+32C>T
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000433348
  ensembl transcript: ENST00000529824
  gene symbol: TIAM2
  hgvsc: ENST00000529824.2:c.1194+32C>T
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000356142
  ensembl transcript: ENST00000367174
  gene symbol: TIAM2
  hgvsc: ENST00000367174.2:c.-751+32C>T
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000434901
  ensembl transcript: ENST00000528535
  gene symbol: TIAM2
  hgvsc: ENST00000528535.1:c.1194+32C>T
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000437188
  ensembl transcript: ENST00000461783
  gene symbol: TIAM2
  hgvsc: ENST00000461783.3:c.1194+32C>T
  variant of: http://identifiers.org/hgnc/11806
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7642
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19106
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11287
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2371
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2131
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8263
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8517
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 654
  bin: 3.75e1
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genotype depth: GenotypeDepth
  all individuals: 78
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 611
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1038
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1080
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1008
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1510
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2528
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15328
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7512
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 711
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 414
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
reference allele: C
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ

6-155451587-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 155451587
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 155451587
    reference: chr 6
allele count: 1
allele frequency: 1.006319687638369e-5
allele num: 99372
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000356142
  ensembl transcript: ENST00000367174
  gene symbol: TIAM2
  hgvsc: ENST00000367174.2:c.-751+36C>T
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000433348
  ensembl transcript: ENST00000529824
  gene symbol: TIAM2
  hgvsc: ENST00000529824.2:c.1194+36C>T
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000407746
  ensembl transcript: ENST00000456144
  gene symbol: TIAM2
  hgvsc: ENST00000456144.1:c.1194+36C>T
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000437188
  ensembl transcript: ENST00000461783
  gene symbol: TIAM2
  hgvsc: ENST00000461783.3:c.1194+36C>T
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000434901
  ensembl transcript: ENST00000528535
  gene symbol: TIAM2
  hgvsc: ENST00000528535.1:c.1194+36C>T
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000327315
  ensembl transcript: ENST00000318981
  gene symbol: TIAM2
  hgvsc: ENST00000318981.5:c.1194+36C>T
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000353528
  ensembl transcript: ENST00000360366
  gene symbol: TIAM2
  hgvsc: ENST00000360366.4:c.1194+36C>T
  variant of: http://identifiers.org/hgnc/11806
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 640
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2116
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8083
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19103
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2288
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7814
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7567
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
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genotype depth: GenotypeDepth
  all individuals: 11
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.75e1
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genotype quality: GenotypeQuality
  all individuals: 519
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 322
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2054
  bin: 6.75e1
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genotype quality: GenotypeQuality
  all individuals: 1158
  bin: 1.25e1
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genotype quality: GenotypeQuality
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  bin: 7.5e0
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genotype quality: GenotypeQuality
  all individuals: 611
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1689
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 683
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
population: Other
population: African
reference allele: C
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS

6-155451593-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 155451593
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 155451593
    reference: chr 6
allele count: 1
allele frequency: 1.032503200759922e-5
allele num: 96852
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000433348
  ensembl transcript: ENST00000529824
  gene symbol: TIAM2
  hgvsc: ENST00000529824.2:c.1194+42C>T
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000437188
  ensembl transcript: ENST00000461783
  gene symbol: TIAM2
  hgvsc: ENST00000461783.3:c.1194+42C>T
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000356142
  ensembl transcript: ENST00000367174
  gene symbol: TIAM2
  hgvsc: ENST00000367174.2:c.-751+42C>T
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000407746
  ensembl transcript: ENST00000456144
  gene symbol: TIAM2
  hgvsc: ENST00000456144.1:c.1194+42C>T
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000327315
  ensembl transcript: ENST00000318981
  gene symbol: TIAM2
  hgvsc: ENST00000318981.5:c.1194+42C>T
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000434901
  ensembl transcript: ENST00000528535
  gene symbol: TIAM2
  hgvsc: ENST00000528535.1:c.1194+42C>T
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000353528
  ensembl transcript: ENST00000360366
  gene symbol: TIAM2
  hgvsc: ENST00000360366.4:c.1194+42C>T
  variant of: http://identifiers.org/hgnc/11806
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18323
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7102
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15079
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9182
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2424
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1759
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5426
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1662
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2775
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 609
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3061
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 317
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 867
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14258
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2426
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 210
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 394
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: Other
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum

6-155458273-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 155458273
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 155458273
    reference: chr 6
allele count: 7
allele frequency: 6.179269433802369e-5
allele num: 113282
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000327315
  ensembl transcript: ENST00000318981
  gene symbol: TIAM2
  hgvsc: ENST00000318981.5:c.1195-38C>T
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000434901
  ensembl transcript: ENST00000528535
  gene symbol: TIAM2
  hgvsc: ENST00000528535.1:c.1195-38C>T
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000356142
  ensembl transcript: ENST00000367174
  gene symbol: TIAM2
  hgvsc: ENST00000367174.2:c.-750-38C>T
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000433348
  ensembl transcript: ENST00000529824
  gene symbol: TIAM2
  hgvsc: ENST00000529824.2:c.1195-38C>T
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000353528
  ensembl transcript: ENST00000360366
  gene symbol: TIAM2
  hgvsc: ENST00000360366.4:c.1195-38C>T
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000407746
  ensembl transcript: ENST00000456144
  gene symbol: TIAM2
  hgvsc: ENST00000456144.1:c.1195-38C>T
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000437188
  ensembl transcript: ENST00000461783
  gene symbol: TIAM2
  hgvsc: ENST00000461783.3:c.1195-38C>T
  variant of: http://identifiers.org/hgnc/11806
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 549
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6642
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 603
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20241
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4583
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17015
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3298
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3702
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1008
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2140
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 307
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 146
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1265
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 448
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1955
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 437
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 334
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1528
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1108
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2111
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
population: Other
population: South Asian
population: European (Non-Finnish)
population: African
reference allele: C
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: MQ

6-155458274-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 155458274
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 155458274
    reference: chr 6
allele count: 7
allele frequency: 6.180142319848851e-5
allele num: 113266
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000356142
  ensembl transcript: ENST00000367174
  gene symbol: TIAM2
  hgvsc: ENST00000367174.2:c.-750-37G>A
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000433348
  ensembl transcript: ENST00000529824
  gene symbol: TIAM2
  hgvsc: ENST00000529824.2:c.1195-37G>A
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000437188
  ensembl transcript: ENST00000461783
  gene symbol: TIAM2
  hgvsc: ENST00000461783.3:c.1195-37G>A
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000327315
  ensembl transcript: ENST00000318981
  gene symbol: TIAM2
  hgvsc: ENST00000318981.5:c.1195-37G>A
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000407746
  ensembl transcript: ENST00000456144
  gene symbol: TIAM2
  hgvsc: ENST00000456144.1:c.1195-37G>A
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000353528
  ensembl transcript: ENST00000360366
  gene symbol: TIAM2
  hgvsc: ENST00000360366.4:c.1195-37G>A
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000434901
  ensembl transcript: ENST00000528535
  gene symbol: TIAM2
  hgvsc: ENST00000528535.1:c.1195-37G>A
  variant of: http://identifiers.org/hgnc/11806
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 498
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20819
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3297
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2155
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2885
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1018
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6912
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4241
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 604
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17353
  bin: 2.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 435
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1797
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2184
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 427
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 619
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 364
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1228
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1091
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33700
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 939
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: East Asian
population: Latino
population: Other
reference allele: G
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum

6-155458283-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 155458283
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 155458283
    reference: chr 6
allele count: 5
allele frequency: 4.373075846627484e-5
allele num: 114336
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000433348
  ensembl transcript: ENST00000529824
  gene symbol: TIAM2
  hgvsc: ENST00000529824.2:c.1195-28G>C
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000434901
  ensembl transcript: ENST00000528535
  gene symbol: TIAM2
  hgvsc: ENST00000528535.1:c.1195-28G>C
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000353528
  ensembl transcript: ENST00000360366
  gene symbol: TIAM2
  hgvsc: ENST00000360366.4:c.1195-28G>C
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000407746
  ensembl transcript: ENST00000456144
  gene symbol: TIAM2
  hgvsc: ENST00000456144.1:c.1195-28G>C
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000327315
  ensembl transcript: ENST00000318981
  gene symbol: TIAM2
  hgvsc: ENST00000318981.5:c.1195-28G>C
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000356142
  ensembl transcript: ENST00000367174
  gene symbol: TIAM2
  hgvsc: ENST00000367174.2:c.-750-28G>C
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000437188
  ensembl transcript: ENST00000461783
  gene symbol: TIAM2
  hgvsc: ENST00000461783.3:c.1195-28G>C
  variant of: http://identifiers.org/hgnc/11806
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2772
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 908
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1011
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 604
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23531
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18387
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2145
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3194
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6981
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1135
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 454
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2187
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1874
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 323
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 337
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 250
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 921
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 227
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
population: East Asian
population: Other
reference allele: G
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ

6-155458293-CAT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 155458293
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 155458291
    reference: chr 6
allele count: 1
allele frequency: 8.670470112889521e-6
allele num: 115334
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000407746
  ensembl transcript: ENST00000456144
  gene symbol: TIAM2
  hgvsc: ENST00000456144.1:c.1195-17_1195-16delAT
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000433348
  ensembl transcript: ENST00000529824
  gene symbol: TIAM2
  hgvsc: ENST00000529824.2:c.1195-17_1195-16delAT
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000437188
  ensembl transcript: ENST00000461783
  gene symbol: TIAM2
  hgvsc: ENST00000461783.3:c.1195-17_1195-16delAT
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000353528
  ensembl transcript: ENST00000360366
  gene symbol: TIAM2
  hgvsc: ENST00000360366.4:c.1195-17_1195-16delAT
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000356142
  ensembl transcript: ENST00000367174
  gene symbol: TIAM2
  hgvsc: ENST00000367174.2:c.-750-17_-750-16delAT
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000434901
  ensembl transcript: ENST00000528535
  gene symbol: TIAM2
  hgvsc: ENST00000528535.1:c.1195-17_1195-16delAT
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000327315
  ensembl transcript: ENST00000318981
  gene symbol: TIAM2
  hgvsc: ENST00000318981.5:c.1195-17_1195-16delAT
  variant of: http://identifiers.org/hgnc/11806
canonical: true
consequence: intron
filter: VQSRTrancheINDEL95.00to96.00
genotype depth: GenotypeDepth
  all individuals: 19315
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1830
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2793
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7163
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24235
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2162
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1017
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 460
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 227
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1902
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 199
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39724
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2925
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6799
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 563
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 124
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: Other
reference allele: CAT
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD

http://identifiers.org/exac.variant/6-155458294-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 155458294
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 155458294
    reference: chr 6
allele count: 1
allele frequency: 8.648873051841344e-6
allele num: 115622
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000434901
  ensembl transcript: ENST00000528535
  gene symbol: TIAM2
  hgvsc: ENST00000528535.1:c.1195-17A>C
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000327315
  ensembl transcript: ENST00000318981
  gene symbol: TIAM2
  hgvsc: ENST00000318981.5:c.1195-17A>C
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000353528
  ensembl transcript: ENST00000360366
  gene symbol: TIAM2
  hgvsc: ENST00000360366.4:c.1195-17A>C
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000433348
  ensembl transcript: ENST00000529824
  gene symbol: TIAM2
  hgvsc: ENST00000529824.2:c.1195-17A>C
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000356142
  ensembl transcript: ENST00000367174
  gene symbol: TIAM2
  hgvsc: ENST00000367174.2:c.-750-17A>C
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000437188
  ensembl transcript: ENST00000461783
  gene symbol: TIAM2
  hgvsc: ENST00000461783.3:c.1195-17A>C
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000407746
  ensembl transcript: ENST00000456144
  gene symbol: TIAM2
  hgvsc: ENST00000456144.1:c.1195-17A>C
  variant of: http://identifiers.org/hgnc/11806
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 535
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7159
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19374
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2154
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2729
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24397
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1731
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1013
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6835
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1164
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 188
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2866
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 180
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 460
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 718
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2042
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: European (Finnish)
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD

6-155458306-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 155458306
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 155458306
    reference: chr 6
allele count: 1
allele frequency: 8.535044894336143e-6
allele num: 117164
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000353528
  ensembl transcript: ENST00000360366
  gene symbol: TIAM2
  hgvsc: ENST00000360366.4:c.1195-5C>T
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000356142
  ensembl transcript: ENST00000367174
  gene symbol: TIAM2
  hgvsc: ENST00000367174.2:c.-750-5C>T
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000433348
  ensembl transcript: ENST00000529824
  gene symbol: TIAM2
  hgvsc: ENST00000529824.2:c.1195-5C>T
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000434901
  ensembl transcript: ENST00000528535
  gene symbol: TIAM2
  hgvsc: ENST00000528535.1:c.1195-5C>T
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000437188
  ensembl transcript: ENST00000461783
  gene symbol: TIAM2
  hgvsc: ENST00000461783.3:c.1195-5C>T
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000407746
  ensembl transcript: ENST00000456144
  gene symbol: TIAM2
  hgvsc: ENST00000456144.1:c.1195-5C>T
  variant of: http://identifiers.org/hgnc/11806
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146426
  ensembl protein: ENSP00000327315
  ensembl transcript: ENST00000318981
  gene symbol: TIAM2
  hgvsc: ENST00000318981.5:c.1195-5C>T
  variant of: http://identifiers.org/hgnc/11806
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2176
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 609
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1015
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25357
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19903
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1997
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1079
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7233
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2196
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6931
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2038
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 263
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41432
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 467
  bin: 3.25e1
  variant carriers: 0
hgvs: c.1195-5C>T
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Other
reference allele: C
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ

8-92352644-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 92352644
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 92352644
    reference: chr 8
allele count: 2
allele frequency: 1.650137786505173e-5
allele num: 121202
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147606
  ensembl protein: ENSP00000428849
  ensembl transcript: ENST00000523719
  gene symbol: SLC26A7
  hgvsc: ENST00000523719.1:c.891T>C
  hgvsp: ENST00000523719.1:c.891T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14467
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147606
  ensembl protein: ENSP00000276609
  ensembl transcript: ENST00000276609
  gene symbol: SLC26A7
  hgvsc: ENST00000276609.3:c.891T>C
  hgvsp: ENST00000276609.3:c.891T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14467
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147606
  ensembl protein: ENSP00000428747
  ensembl transcript: ENST00000520818
  gene symbol: SLC26A7
  hgvsc: ENST00000520818.1:c.494T>C
  hgvsp: ENST00000520818.1:c.494T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14467
annotation: Annotation
  canonical: false
  consequence: stop_lost
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000147606
  ensembl protein: ENSP00000427712
  ensembl transcript: ENST00000522181
  gene symbol: SLC26A7
  hgvsc: ENST00000522181.1:c.808T>C
  hgvsp: ENSP00000427712.1:p.Ter270GlnextTer13
  variant of: http://identifiers.org/hgnc/14467
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000147606
  ensembl protein: ENSP00000309504
  ensembl transcript: ENST00000309536
  gene symbol: SLC26A7
  hgvsc: ENST00000309536.2:c.891T>C
  hgvsp: ENST00000309536.2:c.891T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14467
canonical: false
consequence: stop lost
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12945
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13847
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29748
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2410
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1246
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 732
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8826
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1856
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1637
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45608
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Ter270GlnextTer13
num of homozygotes: 0
population: Latino
population: Other
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
reference allele: T
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD

8-92352646-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 92352646
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 92352646
    reference: chr 8
allele count: 1
allele frequency: 8.249872126982032e-6
allele num: 121214
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147606
  ensembl protein: ENSP00000276609
  ensembl transcript: ENST00000276609
  gene symbol: SLC26A7
  hgvsc: ENST00000276609.3:c.893G>T
  hgvsp: ENSP00000276609.3:p.Arg298Ile
  variant of: http://identifiers.org/hgnc/14467
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000147606
  ensembl protein: ENSP00000309504
  ensembl transcript: ENST00000309536
  gene symbol: SLC26A7
  hgvsc: ENST00000309536.2:c.893G>T
  hgvsp: ENSP00000309504.2:p.Arg298Ile
  variant of: http://identifiers.org/hgnc/14467
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147606
  ensembl protein: ENSP00000428849
  ensembl transcript: ENST00000523719
  gene symbol: SLC26A7
  hgvsc: ENST00000523719.1:c.893G>T
  hgvsp: ENSP00000428849.1:p.Arg298Ile
  variant of: http://identifiers.org/hgnc/14467
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147606
  ensembl protein: ENSP00000428747
  ensembl transcript: ENST00000520818
  gene symbol: SLC26A7
  hgvsc: ENST00000520818.1:c.496G>T
  hgvsp: ENSP00000428747.1:p.Arg166Ile
  variant of: http://identifiers.org/hgnc/14467
annotation: Annotation
  canonical: false
  consequence: stop_lost
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000147606
  ensembl protein: ENSP00000427712
  ensembl transcript: ENST00000522181
  gene symbol: SLC26A7
  hgvsc: ENST00000522181.1:c.810G>T
  hgvsp: ENSP00000427712.1:p.Ter270TyrextTer13
  variant of: http://identifiers.org/hgnc/14467
canonical: false
consequence: stop lost
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12947
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2410
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29762
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13846
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 302
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1857
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45613
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1244
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Ter270TyrextTer13
num of homozygotes: 0
population: African
population: Other
population: South Asian
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: ClippingRankSum

8-92352653-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 92352653
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 92352653
    reference: chr 8
allele count: 5
allele frequency: 4.123371268349002e-5
allele num: 121260
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000147606
  ensembl protein: ENSP00000309504
  ensembl transcript: ENST00000309536
  gene symbol: SLC26A7
  hgvsc: ENST00000309536.2:c.900C>T
  hgvsp: ENST00000309536.2:c.900C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14467
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000147606
  ensembl protein: ENSP00000427712
  ensembl transcript: ENST00000522181
  gene symbol: SLC26A7
  hgvsc: ENST00000522181.1:c.*7C>T
  variant of: http://identifiers.org/hgnc/14467
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147606
  ensembl protein: ENSP00000428747
  ensembl transcript: ENST00000520818
  gene symbol: SLC26A7
  hgvsc: ENST00000520818.1:c.503C>T
  hgvsp: ENST00000520818.1:c.503C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14467
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147606
  ensembl protein: ENSP00000276609
  ensembl transcript: ENST00000276609
  gene symbol: SLC26A7
  hgvsc: ENST00000276609.3:c.900C>T
  hgvsp: ENST00000276609.3:c.900C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14467
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147606
  ensembl protein: ENSP00000428849
  ensembl transcript: ENST00000523719
  gene symbol: SLC26A7
  hgvsc: ENST00000523719.1:c.900C>T
  hgvsp: ENST00000523719.1:c.900C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14467
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2410
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29799
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12924
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13866
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1634
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8832
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45650
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1245
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Pro300Pro
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: South Asian
population: East Asian
population: Other
population: European (Finnish)
population: African
reference allele: C
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD

8-92352654-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 92352654
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 92352654
    reference: chr 8
allele count: 10
allele frequency: 8.246470510621453e-5
allele num: 121264
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147606
  ensembl protein: ENSP00000428849
  ensembl transcript: ENST00000523719
  gene symbol: SLC26A7
  hgvsc: ENST00000523719.1:c.901C>T
  hgvsp: ENSP00000428849.1:p.Pro301Ser
  variant of: http://identifiers.org/hgnc/14467
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000147606
  ensembl protein: ENSP00000309504
  ensembl transcript: ENST00000309536
  gene symbol: SLC26A7
  hgvsc: ENST00000309536.2:c.901C>T
  hgvsp: ENSP00000309504.2:p.Pro301Ser
  variant of: http://identifiers.org/hgnc/14467
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147606
  ensembl protein: ENSP00000428747
  ensembl transcript: ENST00000520818
  gene symbol: SLC26A7
  hgvsc: ENST00000520818.1:c.504C>T
  hgvsp: ENSP00000428747.1:p.Pro169Ser
  variant of: http://identifiers.org/hgnc/14467
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000147606
  ensembl protein: ENSP00000427712
  ensembl transcript: ENST00000522181
  gene symbol: SLC26A7
  hgvsc: ENST00000522181.1:c.*8C>T
  variant of: http://identifiers.org/hgnc/14467
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147606
  ensembl protein: ENSP00000276609
  ensembl transcript: ENST00000276609
  gene symbol: SLC26A7
  hgvsc: ENST00000276609.3:c.901C>T
  hgvsp: ENSP00000276609.3:p.Pro301Ser
  variant of: http://identifiers.org/hgnc/14467
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 12912
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29809
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13869
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2413
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 254
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8838
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1247
  bin: 9.75e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1634
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 732
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Pro301Ser
num of homozygotes: 1
population: East Asian
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: C
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: DP

8-92352655-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 92352655
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 92352655
    reference: chr 8
allele count: 2
allele frequency: 1.649375711293276e-5
allele num: 121258
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000147606
  ensembl protein: ENSP00000427712
  ensembl transcript: ENST00000522181
  gene symbol: SLC26A7
  hgvsc: ENST00000522181.1:c.*9C>G
  variant of: http://identifiers.org/hgnc/14467
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147606
  ensembl protein: ENSP00000428747
  ensembl transcript: ENST00000520818
  gene symbol: SLC26A7
  hgvsc: ENST00000520818.1:c.505C>G
  hgvsp: ENSP00000428747.1:p.Pro169Arg
  variant of: http://identifiers.org/hgnc/14467
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000147606
  ensembl protein: ENSP00000309504
  ensembl transcript: ENST00000309536
  gene symbol: SLC26A7
  hgvsc: ENST00000309536.2:c.902C>G
  hgvsp: ENSP00000309504.2:p.Pro301Arg
  variant of: http://identifiers.org/hgnc/14467
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147606
  ensembl protein: ENSP00000428849
  ensembl transcript: ENST00000523719
  gene symbol: SLC26A7
  hgvsc: ENST00000523719.1:c.902C>G
  hgvsp: ENSP00000428849.1:p.Pro301Arg
  variant of: http://identifiers.org/hgnc/14467
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147606
  ensembl protein: ENSP00000276609
  ensembl transcript: ENST00000276609
  gene symbol: SLC26A7
  hgvsc: ENST00000276609.3:c.902C>G
  hgvsp: ENSP00000276609.3:p.Pro301Arg
  variant of: http://identifiers.org/hgnc/14467
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12908
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2414
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13870
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 29819
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45659
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1849
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8841
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1633
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 733
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Pro301Arg
num of homozygotes: 0
population: Other
population: South Asian
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: African
reference allele: C
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: DP

8-92352655-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 92352655
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 92352655
    reference: chr 8
allele count: 1
allele frequency: 8.246878556466378e-6
allele num: 121258
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147606
  ensembl protein: ENSP00000428747
  ensembl transcript: ENST00000520818
  gene symbol: SLC26A7
  hgvsc: ENST00000520818.1:c.505C>T
  hgvsp: ENSP00000428747.1:p.Pro169Leu
  variant of: http://identifiers.org/hgnc/14467
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147606
  ensembl protein: ENSP00000276609
  ensembl transcript: ENST00000276609
  gene symbol: SLC26A7
  hgvsc: ENST00000276609.3:c.902C>T
  hgvsp: ENSP00000276609.3:p.Pro301Leu
  variant of: http://identifiers.org/hgnc/14467
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000147606
  ensembl protein: ENSP00000309504
  ensembl transcript: ENST00000309536
  gene symbol: SLC26A7
  hgvsc: ENST00000309536.2:c.902C>T
  hgvsp: ENSP00000309504.2:p.Pro301Leu
  variant of: http://identifiers.org/hgnc/14467
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000147606
  ensembl protein: ENSP00000427712
  ensembl transcript: ENST00000522181
  gene symbol: SLC26A7
  hgvsc: ENST00000522181.1:c.*9C>T
  variant of: http://identifiers.org/hgnc/14467
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147606
  ensembl protein: ENSP00000428849
  ensembl transcript: ENST00000523719
  gene symbol: SLC26A7
  hgvsc: ENST00000523719.1:c.902C>T
  hgvsp: ENSP00000428849.1:p.Pro301Leu
  variant of: http://identifiers.org/hgnc/14467
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29819
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12908
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2414
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13870
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1633
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 254
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 733
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45659
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Pro301Leu
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: C
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff

8-92352658-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 92352658
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 92352658
    reference: chr 8
allele count: 3
allele frequency: 2.473573984597879e-5
allele num: 121282
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000147606
  ensembl protein: ENSP00000309504
  ensembl transcript: ENST00000309536
  gene symbol: SLC26A7
  hgvsc: ENST00000309536.2:c.905T>C
  hgvsp: ENSP00000309504.2:p.Met302Thr
  variant of: http://identifiers.org/hgnc/14467
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147606
  ensembl protein: ENSP00000276609
  ensembl transcript: ENST00000276609
  gene symbol: SLC26A7
  hgvsc: ENST00000276609.3:c.905T>C
  hgvsp: ENSP00000276609.3:p.Met302Thr
  variant of: http://identifiers.org/hgnc/14467
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000147606
  ensembl protein: ENSP00000427712
  ensembl transcript: ENST00000522181
  gene symbol: SLC26A7
  hgvsc: ENST00000522181.1:c.*12T>C
  variant of: http://identifiers.org/hgnc/14467
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147606
  ensembl protein: ENSP00000428747
  ensembl transcript: ENST00000520818
  gene symbol: SLC26A7
  hgvsc: ENST00000520818.1:c.508T>C
  hgvsp: ENSP00000428747.1:p.Met170Thr
  variant of: http://identifiers.org/hgnc/14467
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147606
  ensembl protein: ENSP00000428849
  ensembl transcript: ENST00000523719
  gene symbol: SLC26A7
  hgvsc: ENST00000523719.1:c.905T>C
  hgvsp: ENSP00000428849.1:p.Met302Thr
  variant of: http://identifiers.org/hgnc/14467
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13875
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29829
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12923
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2408
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1635
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8845
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1238
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 45698
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Met302Thr
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum

8-92352666-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 92352666
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 92352666
    reference: chr 8
allele count: 1
allele frequency: 8.244023083264634e-6
allele num: 121300
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147606
  ensembl protein: ENSP00000428747
  ensembl transcript: ENST00000520818
  gene symbol: SLC26A7
  hgvsc: ENST00000520818.1:c.516C>T
  hgvsp: ENSP00000428747.1:p.Leu173Phe
  variant of: http://identifiers.org/hgnc/14467
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147606
  ensembl protein: ENSP00000276609
  ensembl transcript: ENST00000276609
  gene symbol: SLC26A7
  hgvsc: ENST00000276609.3:c.913C>T
  hgvsp: ENSP00000276609.3:p.Leu305Phe
  variant of: http://identifiers.org/hgnc/14467
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000147606
  ensembl protein: ENSP00000309504
  ensembl transcript: ENST00000309536
  gene symbol: SLC26A7
  hgvsc: ENST00000309536.2:c.913C>T
  hgvsp: ENSP00000309504.2:p.Leu305Phe
  variant of: http://identifiers.org/hgnc/14467
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147606
  ensembl protein: ENSP00000428849
  ensembl transcript: ENST00000523719
  gene symbol: SLC26A7
  hgvsc: ENST00000523719.1:c.913C>T
  hgvsp: ENSP00000428849.1:p.Leu305Phe
  variant of: http://identifiers.org/hgnc/14467
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000147606
  ensembl protein: ENSP00000427712
  ensembl transcript: ENST00000522181
  gene symbol: SLC26A7
  hgvsc: ENST00000522181.1:c.*20C>T
  variant of: http://identifiers.org/hgnc/14467
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13886
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12911
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2413
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29843
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45701
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1855
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1639
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 730
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1234
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Leu305Phe
num of homozygotes: 0
population: Latino
population: Other
population: South Asian
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum

8-92352670-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 92352670
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 92352670
    reference: chr 8
allele count: 1
allele frequency: 8.244023083264634e-6
allele num: 121300
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000147606
  ensembl protein: ENSP00000309504
  ensembl transcript: ENST00000309536
  gene symbol: SLC26A7
  hgvsc: ENST00000309536.2:c.917C>T
  hgvsp: ENSP00000309504.2:p.Ser306Phe
  variant of: http://identifiers.org/hgnc/14467
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000147606
  ensembl protein: ENSP00000427712
  ensembl transcript: ENST00000522181
  gene symbol: SLC26A7
  hgvsc: ENST00000522181.1:c.*24C>T
  variant of: http://identifiers.org/hgnc/14467
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147606
  ensembl protein: ENSP00000428849
  ensembl transcript: ENST00000523719
  gene symbol: SLC26A7
  hgvsc: ENST00000523719.1:c.917C>T
  hgvsp: ENSP00000428849.1:p.Ser306Phe
  variant of: http://identifiers.org/hgnc/14467
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147606
  ensembl protein: ENSP00000276609
  ensembl transcript: ENST00000276609
  gene symbol: SLC26A7
  hgvsc: ENST00000276609.3:c.917C>T
  hgvsp: ENSP00000276609.3:p.Ser306Phe
  variant of: http://identifiers.org/hgnc/14467
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147606
  ensembl protein: ENSP00000428747
  ensembl transcript: ENST00000520818
  gene symbol: SLC26A7
  hgvsc: ENST00000520818.1:c.520C>T
  hgvsp: ENSP00000428747.1:p.Ser174Phe
  variant of: http://identifiers.org/hgnc/14467
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12907
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13890
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2413
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29850
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 731
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1856
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8852
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 304
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 252
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45704
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Ser306Phe
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Other
population: African
reference allele: C
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: DP

8-92352673-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 92352673
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 92352673
    reference: chr 8
allele count: 4
allele frequency: 3.29777235477435e-5
allele num: 121294
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000147606
  ensembl protein: ENSP00000427712
  ensembl transcript: ENST00000522181
  gene symbol: SLC26A7
  hgvsc: ENST00000522181.1:c.*27C>T
  variant of: http://identifiers.org/hgnc/14467
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147606
  ensembl protein: ENSP00000428747
  ensembl transcript: ENST00000520818
  gene symbol: SLC26A7
  hgvsc: ENST00000520818.1:c.523C>T
  hgvsp: ENSP00000428747.1:p.Ala175Val
  variant of: http://identifiers.org/hgnc/14467
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147606
  ensembl protein: ENSP00000276609
  ensembl transcript: ENST00000276609
  gene symbol: SLC26A7
  hgvsc: ENST00000276609.3:c.920C>T
  hgvsp: ENSP00000276609.3:p.Ala307Val
  variant of: http://identifiers.org/hgnc/14467
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147606
  ensembl protein: ENSP00000428849
  ensembl transcript: ENST00000523719
  gene symbol: SLC26A7
  hgvsc: ENST00000523719.1:c.920C>T
  hgvsp: ENSP00000428849.1:p.Ala307Val
  variant of: http://identifiers.org/hgnc/14467
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000147606
  ensembl protein: ENSP00000309504
  ensembl transcript: ENST00000309536
  gene symbol: SLC26A7
  hgvsc: ENST00000309536.2:c.920C>T
  hgvsp: ENSP00000309504.2:p.Ala307Val
  variant of: http://identifiers.org/hgnc/14467
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13891
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 12901
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2409
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29856
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 302
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1231
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 731
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8856
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45705
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Ala307Val
num of homozygotes: 0
population: Other
population: South Asian
population: East Asian
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum

8-92352674-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 92352674
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 92352674
    reference: chr 8
allele count: 5
allele frequency: 4.122419365477211e-5
allele num: 121288
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147606
  ensembl protein: ENSP00000276609
  ensembl transcript: ENST00000276609
  gene symbol: SLC26A7
  hgvsc: ENST00000276609.3:c.921G>A
  hgvsp: ENST00000276609.3:c.921G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14467
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147606
  ensembl protein: ENSP00000428747
  ensembl transcript: ENST00000520818
  gene symbol: SLC26A7
  hgvsc: ENST00000520818.1:c.524G>A
  hgvsp: ENST00000520818.1:c.524G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14467
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000147606
  ensembl protein: ENSP00000309504
  ensembl transcript: ENST00000309536
  gene symbol: SLC26A7
  hgvsc: ENST00000309536.2:c.921G>A
  hgvsp: ENST00000309536.2:c.921G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14467
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000147606
  ensembl protein: ENSP00000427712
  ensembl transcript: ENST00000522181
  gene symbol: SLC26A7
  hgvsc: ENST00000522181.1:c.*28G>A
  variant of: http://identifiers.org/hgnc/14467
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147606
  ensembl protein: ENSP00000428849
  ensembl transcript: ENST00000523719
  gene symbol: SLC26A7
  hgvsc: ENST00000523719.1:c.921G>A
  hgvsp: ENST00000523719.1:c.921G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14467
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 29866
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13884
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2410
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12903
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1858
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1635
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 730
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 302
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45713
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1229
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Ala307Ala
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum

8-92352677-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 92352677
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 92352677
    reference: chr 8
allele count: 1
allele frequency: 8.24347940778844e-6
allele num: 121308
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147606
  ensembl protein: ENSP00000276609
  ensembl transcript: ENST00000276609
  gene symbol: SLC26A7
  hgvsc: ENST00000276609.3:c.924G>A
  hgvsp: ENST00000276609.3:c.924G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14467
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000147606
  ensembl protein: ENSP00000427712
  ensembl transcript: ENST00000522181
  gene symbol: SLC26A7
  hgvsc: ENST00000522181.1:c.*31G>A
  variant of: http://identifiers.org/hgnc/14467
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000147606
  ensembl protein: ENSP00000309504
  ensembl transcript: ENST00000309536
  gene symbol: SLC26A7
  hgvsc: ENST00000309536.2:c.924G>A
  hgvsp: ENST00000309536.2:c.924G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14467
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147606
  ensembl protein: ENSP00000428747
  ensembl transcript: ENST00000520818
  gene symbol: SLC26A7
  hgvsc: ENST00000520818.1:c.527G>A
  hgvsp: ENST00000520818.1:c.527G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14467
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147606
  ensembl protein: ENSP00000428849
  ensembl transcript: ENST00000523719
  gene symbol: SLC26A7
  hgvsc: ENST00000523719.1:c.924G>A
  hgvsp: ENST00000523719.1:c.924G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14467
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12899
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29878
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2406
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13883
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1223
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 730
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 250
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1859
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Val308Val
num of homozygotes: 0
population: African
population: Other
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum

8-92352681-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 92352681
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 92352681
    reference: chr 8
allele count: 1
allele frequency: 8.243207596940122e-6
allele num: 121312
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000147606
  ensembl protein: ENSP00000309504
  ensembl transcript: ENST00000309536
  gene symbol: SLC26A7
  hgvsc: ENST00000309536.2:c.928A>T
  hgvsp: ENSP00000309504.2:p.Thr310Ser
  variant of: http://identifiers.org/hgnc/14467
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147606
  ensembl protein: ENSP00000428849
  ensembl transcript: ENST00000523719
  gene symbol: SLC26A7
  hgvsc: ENST00000523719.1:c.928A>T
  hgvsp: ENSP00000428849.1:p.Thr310Ser
  variant of: http://identifiers.org/hgnc/14467
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147606
  ensembl protein: ENSP00000428747
  ensembl transcript: ENST00000520818
  gene symbol: SLC26A7
  hgvsc: ENST00000520818.1:c.531A>T
  hgvsp: ENSP00000428747.1:p.Thr178Ser
  variant of: http://identifiers.org/hgnc/14467
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147606
  ensembl protein: ENSP00000276609
  ensembl transcript: ENST00000276609
  gene symbol: SLC26A7
  hgvsc: ENST00000276609.3:c.928A>T
  hgvsp: ENSP00000276609.3:p.Thr310Ser
  variant of: http://identifiers.org/hgnc/14467
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000147606
  ensembl protein: ENSP00000427712
  ensembl transcript: ENST00000522181
  gene symbol: SLC26A7
  hgvsc: ENST00000522181.1:c.*35A>T
  variant of: http://identifiers.org/hgnc/14467
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29875
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13882
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2406
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12903
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 45730
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 302
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1857
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 253
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Thr310Ser
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Other
population: South Asian
reference allele: A
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: MQ

8-92352692-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 92352692
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 92352692
    reference: chr 8
allele count: 5
allele frequency: 4.12173970389422e-5
allele num: 121308
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000147606
  ensembl protein: ENSP00000309504
  ensembl transcript: ENST00000309536
  gene symbol: SLC26A7
  hgvsc: ENST00000309536.2:c.939C>T
  hgvsp: ENST00000309536.2:c.939C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14467
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147606
  ensembl protein: ENSP00000428747
  ensembl transcript: ENST00000520818
  gene symbol: SLC26A7
  hgvsc: ENST00000520818.1:c.542C>T
  hgvsp: ENST00000520818.1:c.542C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14467
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147606
  ensembl protein: ENSP00000276609
  ensembl transcript: ENST00000276609
  gene symbol: SLC26A7
  hgvsc: ENST00000276609.3:c.939C>T
  hgvsp: ENST00000276609.3:c.939C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14467
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000147606
  ensembl protein: ENSP00000427712
  ensembl transcript: ENST00000522181
  gene symbol: SLC26A7
  hgvsc: ENST00000522181.1:c.*46C>T
  variant of: http://identifiers.org/hgnc/14467
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147606
  ensembl protein: ENSP00000428849
  ensembl transcript: ENST00000523719
  gene symbol: SLC26A7
  hgvsc: ENST00000523719.1:c.939C>T
  hgvsp: ENST00000523719.1:c.939C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14467
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 562
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29879
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2406
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12896
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13884
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45719
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 731
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1634
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1853
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Phe313Phe
num of homozygotes: 1
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
population: Other
reference allele: C

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 744
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1703
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 18
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 799
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1728
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42886
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7466
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10396
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.156604210039325e-4
allele num: 8646
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66702
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.329e1

DP
type: SiteQuality
SIO_000300: 1.557192e6

FS
type: SiteQuality
SIO_000300: 4.922e0

MQRankSum
type: SiteQuality
SIO_000300: -4.26e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.63e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.72e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.563e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.1e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -6.19e-1

GenotypeQuality
all individuals: 42886
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1727
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2570
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7478
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2626
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1715
bin: 9.75e1
variant carriers: 6

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10396
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 8.994693131052679e-5
allele num: 66706
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.788e0

DP
type: SiteQuality
SIO_000300: 1.557649e6

VQSLOD
type: SiteQuality
SIO_000300: 1.81e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.749e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.57e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.1e-3

MQRankSum
type: SiteQuality
SIO_000300: 5.79e-1

QD
type: SiteQuality
SIO_000300: 1.138e1

MQ
type: SiteQuality
SIO_000300: 5.982e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.08e-1

GenotypeQuality
all individuals: 7461
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42842
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 806
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1756
bin: 9.75e1
variant carriers: 36

GenotypeQuality
all individuals: 10
bin: 4.25e1
variant carriers: 0

Other
type: Population
allele count: 1
allele frequency: 1.101321585903084e-3
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 33
allele frequency: 3.176130895091434e-3
allele num: 10390
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.637070305752289e-5
allele num: 11578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.49902563333833e-5
allele num: 66710
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.3e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.6e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 1.55e0

VQSLOD
type: SiteQuality
SIO_000300: 3.74e0

FS
type: SiteQuality
SIO_000300: 5.23e-1

DP
type: SiteQuality
SIO_000300: 1.559698e6

ClippingRankSum
type: SiteQuality
SIO_000300: -2.26e-1

MQ
type: SiteQuality
SIO_000300: 5.954e1

QD
type: SiteQuality
SIO_000300: 1.256e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.13e-1

GenotypeQuality
all individuals: 7
bin: 1.25e1
variant carriers: 3

GenotypeQuality
all individuals: 10
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23510
bin: 9.75e1
variant carriers: 23237

GenotypeQuality
all individuals: 20
bin: 3.75e1
variant carriers: 3

GenotypeQuality
all individuals: 36
bin: 2.25e1
variant carriers: 2

GenotypeQuality
all individuals: 3776
bin: 6.75e1
variant carriers: 10

GenotypeQuality
all individuals: 126
bin: 8.75e1
variant carriers: 7

GenotypeQuality
all individuals: 150
bin: 9.25e1
variant carriers: 11

GenotypeQuality
all individuals: 347
bin: 8.25e1
variant carriers: 17

GenotypeQuality
all individuals: 16
bin: 4.25e1
variant carriers: 5

European (Non-Finnish)
type: Population
allele count: 12124
allele frequency: 1.817527658681378e-1
allele num: 66706
num of homozygotes: 1099

Latino
type: Population
allele count: 3134
allele frequency: 2.707325501036628e-1
allele num: 11576
num of homozygotes: 421

African
type: Population
allele count: 1000
allele frequency: 9.622786759045419e-2
allele num: 10392
num of homozygotes: 47

East Asian
type: Population
allele count: 2886
allele frequency: 3.3441483198146e-1
allele num: 8630
num of homozygotes: 479

European (Finnish)
type: Population
allele count: 852
allele frequency: 1.288566243194192e-1
allele num: 6612
num of homozygotes: 52

South Asian
type: Population
allele count: 6738
allele frequency: 4.080668604651163e-1
allele num: 16512
num of homozygotes: 1454

Other
type: Population
allele count: 184
allele frequency: 2.026431718061674e-1
allele num: 908
num of homozygotes: 26

QD
type: SiteQuality
SIO_000300: 1.554e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.47e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.18e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.85e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.07e-2

MQ
type: SiteQuality
SIO_000300: 5.962e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.57e-1

DP
type: SiteQuality
SIO_000300: 2.800989e6

ClippingRankSum
type: SiteQuality
SIO_000300: -4.04e-1

GenotypeQuality
all individuals: 50
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7227
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1395
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1558
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 48270
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 231
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 642
bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10382
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 5.99610253335332e-5
allele num: 66710
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.601126e6

MQ
type: SiteQuality
SIO_000300: 5.962e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.88e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-3

MQRankSum
type: SiteQuality
SIO_000300: -1.96e-1

FS
type: SiteQuality
SIO_000300: 8.33e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.791e0

VQSLOD
type: SiteQuality
SIO_000300: 3.71e0

QD
type: SiteQuality
SIO_000300: 1.37e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.16e-1

GenotypeQuality
all individuals: 7227
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 296
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 893
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 231
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 5.25e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66710
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10382
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.962e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.88e-1

FS
type: SiteQuality
SIO_000300: 8.33e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.96e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.791e0

DP
type: SiteQuality
SIO_000300: 1.601126e6

QD
type: SiteQuality
SIO_000300: 1.37e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-3

VQSLOD
type: SiteQuality
SIO_000300: 3.71e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.16e-1

GenotypeQuality
all individuals: 1385
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7217
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 232
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 48291
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 642
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 898
bin: 9.75e1
variant carriers: 20

GenotypeQuality
all individuals: 29
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1554
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 15
allele frequency: 2.248538450007495e-4
allele num: 66710
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 2.591121091725686e-4
allele num: 11578
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10382
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.101321585903084e-3
allele num: 908
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.962e1

MQRankSum
type: SiteQuality
SIO_000300: 3.49e-1

QD
type: SiteQuality
SIO_000300: 1.396e1

FS
type: SiteQuality
SIO_000300: 6.914e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.0e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.15e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.96e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

DP
type: SiteQuality
SIO_000300: 1.601458e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.44e0

GenotypeQuality
all individuals: 16
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 48306
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 880
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 643
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 291
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1388
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 232
bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66706
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 2.889060092449923e-4
allele num: 10384
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.4e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.92e-1

FS
type: SiteQuality
SIO_000300: 5.574e0

QD
type: SiteQuality
SIO_000300: 1.169e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.590000000000001e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.81e-1

MQ
type: SiteQuality
SIO_000300: 5.955e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.6e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.1e-3

DP
type: SiteQuality
SIO_000300: 1.600255e6

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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bin: 9.75e1
variant carriers: 45

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

African
type: Population
allele count: 46
allele frequency: 4.431599229287091e-3
allele num: 10380
num of homozygotes: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66710
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.951e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.81e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.59e0

QD
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SIO_000300: 1.313e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.49e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 2.8e-2

MQRankSum
type: SiteQuality
SIO_000300: 3.15e-1

DP
type: SiteQuality
SIO_000300: 1.602445e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.42e-1

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66704
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10380
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.637070305752289e-5
allele num: 11578
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.02e-1

DP
type: SiteQuality
SIO_000300: 1.59984e6

BaseQRankSum
type: SiteQuality
SIO_000300: 3.61e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.31e-1

FS
type: SiteQuality
SIO_000300: 1.901e0

VQSLOD
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MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.8e-2

QD
type: SiteQuality
SIO_000300: 1.226e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.6e-3

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66652
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 8.643042350907519e-5
allele num: 11570
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10352
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.236e0

QD
type: SiteQuality
SIO_000300: 1.527e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.852e0

DP
type: SiteQuality
SIO_000300: 1.597553e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -1.114e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.84e0

MQRankSum
type: SiteQuality
SIO_000300: 2.29e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.11e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10332
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.211240310077519e-4
allele num: 16512
num of homozygotes: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66634
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.78e0

MQRankSum
type: SiteQuality
SIO_000300: 3.67e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.9e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.33e-1

MQ
type: SiteQuality
SIO_000300: 5.973e1

FS
type: SiteQuality
SIO_000300: 1.833e0

DP
type: SiteQuality
SIO_000300: 1.597252e6

QD
type: SiteQuality
SIO_000300: 1.588e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.84e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
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GenotypeQuality
all individuals: 53
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 39
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GenotypeQuality
all individuals: 1374
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10332
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.211240310077519e-4
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.647526807333103e-5
allele num: 11564
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.50073536032656e-5
allele num: 66634
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.597252e6

QD
type: SiteQuality
SIO_000300: 1.588e1

MQRankSum
type: SiteQuality
SIO_000300: 3.67e-1

FS
type: SiteQuality
SIO_000300: 1.833e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.33e-1

MQ
type: SiteQuality
SIO_000300: 5.973e1

VQSLOD
type: SiteQuality
SIO_000300: 1.78e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -1.9e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.84e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 985
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variant carriers: 217

GenotypeQuality
all individuals: 39
bin: 3.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.101321585903084e-3
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.676795045480937e-5
allele num: 10334
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.001560811622043e-5
allele num: 66632
num of homozygotes: 0

South Asian
type: Population
allele count: 190
allele frequency: 1.150817686250757e-2
allele num: 16510
num of homozygotes: 3

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 26
allele frequency: 3.009259259259259e-3
allele num: 8640
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 5.78e0

QD
type: SiteQuality
SIO_000300: 1.415e1

DP
type: SiteQuality
SIO_000300: 1.606578e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.54e-1

MQ
type: SiteQuality
SIO_000300: 5.968e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.98e0

MQRankSum
type: SiteQuality
SIO_000300: 2.03e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.97e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.12e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.5008254539997e-5
allele num: 66630
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 1
allele frequency: 9.680542110358181e-5
allele num: 10330
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 4.87e-1

MQ
type: SiteQuality
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VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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QD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 1.485e0

DP
type: SiteQuality
SIO_000300: 1.593786e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.92e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.91e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.473e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10328
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.501140867058965e-5
allele num: 66616
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

BaseQRankSum
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.208e1

DP
type: SiteQuality
SIO_000300: 1.593384e6

FS
type: SiteQuality
SIO_000300: 1.629e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.25e0

MQ
type: SiteQuality
SIO_000300: 5.884e1

MQRankSum
type: SiteQuality
SIO_000300: -1.385e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.024e0

VQSLOD
type: SiteQuality
SIO_000300: -7.957e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11550
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.503940323647958e-5
allele num: 66492
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8630
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 10310
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
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ClippingRankSum
type: SiteQuality
SIO_000300: 2.8e-1

ReadPosRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
type: SiteQuality
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MQRankSum
type: SiteQuality
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QD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.590417e6

FS
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11546
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.505072092953252e-5
allele num: 66442
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16494
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10300
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 4.3e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.42e-1

MQRankSum
type: SiteQuality
SIO_000300: 9.370000000000001e-1

QD
type: SiteQuality
SIO_000300: 1.09e1

DP
type: SiteQuality
SIO_000300: 1.589361e6

VQSLOD
type: SiteQuality
SIO_000300: 4.48e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.54e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 1.03e0

GenotypeQuality
all individuals: 7149
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1367
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 276
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 348
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 764
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 226
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 4.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10300
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 1.818843215714805e-4
allele num: 16494
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11546
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66442
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 9.370000000000001e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.03e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.42e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 4.3e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.48e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.54e0

DP
type: SiteQuality
SIO_000300: 1.589361e6

QD
type: SiteQuality
SIO_000300: 1.09e1

GenotypeQuality
all individuals: 277
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 763
bin: 9.75e1
variant carriers: 5

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 5.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.020469596628537e-5
allele num: 66440
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.062810719049351e-5
allele num: 16494
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10288
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11546
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.23e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.48e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.0e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -1.64e-1

FS
type: SiteQuality
SIO_000300: 1.741e0

VQSLOD
type: SiteQuality
SIO_000300: 1.01e0

MQ
type: SiteQuality
SIO_000300: 5.956e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.213e0

DP
type: SiteQuality
SIO_000300: 1.589077e6

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 226
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 93
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 392
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 274
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47978
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 633
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.159285879897983e-4
allele num: 8626
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.506069459923492e-5
allele num: 66398
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10284
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16494
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11540
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.207e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 6.96e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.65e-1

DP
type: SiteQuality
SIO_000300: 1.588227e6

MQ
type: SiteQuality
SIO_000300: 5.982e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.218e0

FS
type: SiteQuality
SIO_000300: 8.117000000000001e0

QD
type: SiteQuality
SIO_000300: 2.686e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.35e0

GenotypeQuality
all individuals: 4
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 96
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 225
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1535
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 634
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 456
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 274
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10274
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.212856276531231e-4
allele num: 16490
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66334
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11534
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.04e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.14e0

DP
type: SiteQuality
SIO_000300: 1.58667e6

QD
type: SiteQuality
SIO_000300: 1.421e1

MQRankSum
type: SiteQuality
SIO_000300: -1.01e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -6.51e-1

FS
type: SiteQuality
SIO_000300: 5.02e0

VQSLOD
type: SiteQuality
SIO_000300: 9.84e-1

GenotypeQuality
all individuals: 469
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47970
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 225
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 93
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 273
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1532
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 3.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10266
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.508204633204633e-5
allele num: 66304
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16486
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11534
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.586421e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -3.0e-2

QD
type: SiteQuality
SIO_000300: 1.153e1

VQSLOD
type: SiteQuality
SIO_000300: -9.641999999999999e-1

MQ
type: SiteQuality
SIO_000300: 5.848e1

FS
type: SiteQuality
SIO_000300: 2.001e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.606e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.8e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -2.47e-1

GenotypeQuality
all individuals: 14
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 749
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 7130
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 224
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 478
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1529
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1364
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 273
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.159823706796567e-4
allele num: 8622
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66302
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10270
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16484
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11534
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.735e0

MQRankSum
type: SiteQuality
SIO_000300: 1.17e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.202e0

VQSLOD
type: SiteQuality
SIO_000300: 1.61e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.32e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.4e0

DP
type: SiteQuality
SIO_000300: 1.586132e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.543e1

GenotypeQuality
all individuals: 539
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 16
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1327
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1485
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7038
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 606
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 259
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1224
bin: 9.75e1
variant carriers: 556

African
type: Population
allele count: 548
allele frequency: 5.344255900136532e-2
allele num: 10254
num of homozygotes: 19

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.53158514848494e-5
allele num: 66202
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8614
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.070908207867897e-5
allele num: 16472
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.116071428571429e-3
allele num: 896
num of homozygotes: 0

Latino
type: Population
allele count: 28
allele frequency: 2.430133657351154e-3
allele num: 11522
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.44e0

FS
type: SiteQuality
SIO_000300: 1.104e0

VQSLOD
type: SiteQuality
SIO_000300: 5.02e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.95e-2

MQ
type: SiteQuality
SIO_000300: 5.971e1

MQRankSum
type: SiteQuality
SIO_000300: 2.59e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.99e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.9e-2

DP
type: SiteQuality
SIO_000300: 1.60515e6

QD
type: SiteQuality
SIO_000300: 1.367e1

GenotypeQuality
all individuals: 10
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1331
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 214
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1485
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 103
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 267
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7031
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11520
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8612
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.073120369245719e-5
allele num: 16466
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10256
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.046131987061277e-5
allele num: 66158
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.75e0

MQ
type: SiteQuality
SIO_000300: 5.925e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.22e-1

QD
type: SiteQuality
SIO_000300: 1.274e1

FS
type: SiteQuality
SIO_000300: 2.447e0

DP
type: SiteQuality
SIO_000300: 1.603031e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -2.3e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.79e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.12e0

GenotypeQuality
all individuals: 15
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 89
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 214
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 267
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1486
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47612
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 95
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1166
bin: 9.75e1
variant carriers: 3

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10254
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11520
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.023248783142365e-5
allele num: 66154
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.073120369245719e-5
allele num: 16466
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.18e1

VQSLOD
type: SiteQuality
SIO_000300: -9.12e-2

DP
type: SiteQuality
SIO_000300: 1.602827e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.28e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 1.16e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.27e-1

FS
type: SiteQuality
SIO_000300: 1.103e1

MQ
type: SiteQuality
SIO_000300: 5.981e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.03e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16468
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8606
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10240
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.512721991952319e-5
allele num: 66106
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11518
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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QD
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MQ
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SIO_000300: 5.969e1

ReadPosRankSum
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SIO_000300: 5.36e-1

BaseQRankSum
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MQRankSum
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DP
type: SiteQuality
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VQSLOD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 1.106e0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 554

Other
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allele frequency: 1.116071428571429e-3
allele num: 896
num of homozygotes: 0

African
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allele count: 547
allele frequency: 5.341796875e-2
allele num: 10240
num of homozygotes: 20

Latino
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allele count: 28
allele frequency: 2.430977600277826e-3
allele num: 11518
num of homozygotes: 0

European (Non-Finnish)
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allele count: 3
allele frequency: 4.538165975856957e-5
allele num: 66106
num of homozygotes: 0

South Asian
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allele frequency: 6.072382803011902e-5
allele num: 16468
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8606
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.36e-1

MQ
type: SiteQuality
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VQSLOD
type: SiteQuality
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FS
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ClippingRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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MQRankSum
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QD
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DP
type: SiteQuality
SIO_000300: 1.603612e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.348e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16468
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10218
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8606
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11516
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.512630464377553e-5
allele num: 66110
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.581928e6

MQRankSum
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QD
type: SiteQuality
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VQSLOD
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InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ReadPosRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 5.415e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.181e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.77e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11516
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66100
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10218
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8606
num of homozygotes: 0

South Asian
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allele frequency: 2.428953121204761e-4
allele num: 16468
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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DP
type: SiteQuality
SIO_000300: 1.58181e6

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 8.93e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 1.9e0

QD
type: SiteQuality
SIO_000300: 1.277e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.0e-1

MQ
type: SiteQuality
SIO_000300: 5.977e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.793e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.77e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.16198001394376e-4
allele num: 8606
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16464
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10200
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66002
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11510
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 7.408e0

MQRankSum
type: SiteQuality
SIO_000300: -7.54e-1

MQ
type: SiteQuality
SIO_000300: 5.951e1

BaseQRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.579642e6

ReadPosRankSum
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.028e1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.61e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

VQSLOD
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 65906
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16458
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African
type: Population
allele count: 1
allele frequency: 9.823182711198428e-5
allele num: 10180
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11506
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Other
type: Population
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allele num: 892
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East Asian
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MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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ReadPosRankSum
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MQRankSum
type: SiteQuality
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VQSLOD
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FS
type: SiteQuality
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InbreedingCoeff
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BaseQRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8604
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11506
num of homozygotes: 0

South Asian
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allele frequency: 6.076072426783327e-5
allele num: 16458
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10176
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.517220452131695e-5
allele num: 65910
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -5.354e-1

FS
type: SiteQuality
SIO_000300: 2.09e0

BaseQRankSum
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ClippingRankSum
type: SiteQuality
SIO_000300: 2.7e-2

MQRankSum
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MQ
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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QD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.577811e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11506
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.035085589413621e-5
allele num: 65896
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 892
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African
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allele frequency: 0.0e0
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East Asian
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South Asian
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allele count: 0
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DP
type: SiteQuality
SIO_000300: 1.577199e6

FS
type: SiteQuality
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InbreedingCoeff
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ReadPosRankSum
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MQRankSum
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VQSLOD
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MQ
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ClippingRankSum
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BaseQRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 10

GenotypeQuality
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variant carriers: 0

Other
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allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
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allele count: 10
allele frequency: 1.517819197377209e-4
allele num: 65884
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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African
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QD
type: SiteQuality
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DP
type: SiteQuality
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InbreedingCoeff
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ReadPosRankSum
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BaseQRankSum
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MQRankSum
type: SiteQuality
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ClippingRankSum
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FS
type: SiteQuality
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VQSLOD
type: SiteQuality
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.691117677733357e-5
allele num: 11506
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16444
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65882
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10152
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8604
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 2.3e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.5e-2

DP
type: SiteQuality
SIO_000300: 1.576316e6

ClippingRankSum
type: SiteQuality
SIO_000300: -6.63e-1

FS
type: SiteQuality
SIO_000300: 7.59e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.1e0

QD
type: SiteQuality
SIO_000300: 8.32e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.18e0

GenotypeQuality
all individuals: 18
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1334
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 260
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 667
bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11506
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16444
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10152
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.517865274278255e-5
allele num: 65882
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8604
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.18e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.63e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.1e0

MQRankSum
type: SiteQuality
SIO_000300: 2.3e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.5e-2

QD
type: SiteQuality
SIO_000300: 8.32e0

FS
type: SiteQuality
SIO_000300: 7.59e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

DP
type: SiteQuality
SIO_000300: 1.576316e6

GenotypeQuality
all individuals: 207
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 4.25e1
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GenotypeQuality
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variant carriers: 14

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 259
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variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8604
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11496
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16434
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10134
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 14
allele frequency: 2.125914902663468e-4
allele num: 65854
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.74e0

DP
type: SiteQuality
SIO_000300: 1.575615e6

ClippingRankSum
type: SiteQuality
SIO_000300: -4.53e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.12e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.87e-1

QD
type: SiteQuality
SIO_000300: 1.063e1

FS
type: SiteQuality
SIO_000300: 1.25e0

MQRankSum
type: SiteQuality
SIO_000300: 1.49e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

GenotypeQuality
all individuals: 258
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 590
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variant carriers: 0

GenotypeQuality
all individuals: 208
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1460
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 121
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 936
bin: 2.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16412
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.519618271890101e-5
allele num: 65806
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11498
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8602
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10090
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.52e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.126e0

VQSLOD
type: SiteQuality
SIO_000300: 8.3e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -4.91e0

QD
type: SiteQuality
SIO_000300: 3.74e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.323e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

MQ
type: SiteQuality
SIO_000300: 5.415e1

DP
type: SiteQuality
SIO_000300: 1.573419e6

GenotypeQuality
all individuals: 79
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 47558
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 7.5e0
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GenotypeQuality
all individuals: 1324
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 206
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41
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variant carriers: 0

GenotypeQuality
all individuals: 1026
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1453
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 659
bin: 9.75e1
variant carriers: 2

South Asian
type: Population
allele count: 1
allele frequency: 6.1020258725897e-5
allele num: 16388
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11496
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10072
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.520450053215752e-5
allele num: 65770
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8598
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.32e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -1.56e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.27e0

DP
type: SiteQuality
SIO_000300: 1.571543e6

QD
type: SiteQuality
SIO_000300: 1.198e1

FS
type: SiteQuality
SIO_000300: 1.1695e1

MQRankSum
type: SiteQuality
SIO_000300: 1.22e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.649e0

GenotypeQuality
all individuals: 94
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 139
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 88
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1313
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variant carriers: 0

GenotypeQuality
all individuals: 86
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variant carriers: 0

GenotypeQuality
all individuals: 206
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 577
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variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 658
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 1440
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 255
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8590
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.119951040391677e-5
allele num: 16340
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.522116350573838e-5
allele num: 65698
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.99000999000999e-5
allele num: 10010
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11492
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.21e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.54e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.8e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.19e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -4.58e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.42e-1

DP
type: SiteQuality
SIO_000300: 1.568199e6

QD
type: SiteQuality
SIO_000300: 1.195e1

GenotypeQuality
all individuals: 14
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 89
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 203
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 142
bin: 2.75e1
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GenotypeQuality
all individuals: 651
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GenotypeQuality
all individuals: 42
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variant carriers: 0

GenotypeQuality
all individuals: 146
bin: 3.25e1
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GenotypeQuality
all individuals: 6965
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variant carriers: 0

GenotypeQuality
all individuals: 68
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variant carriers: 0

GenotypeQuality
all individuals: 1304
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 4.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8590
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.522440777053773e-5
allele num: 65684
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10006
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11490
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16334
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.813e0

DP
type: SiteQuality
SIO_000300: 1.56802e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.5e-3

QD
type: SiteQuality
SIO_000300: 1.166e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.674e0

MQRankSum
type: SiteQuality
SIO_000300: -3.61e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.0e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.73e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.23e-1

GenotypeQuality
all individuals: 20
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1292
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6894
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1491
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 174
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 202
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variant carriers: 0

GenotypeQuality
all individuals: 77
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 78
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GenotypeQuality
all individuals: 89
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variant carriers: 0

GenotypeQuality
all individuals: 568
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47081
bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65590
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9958
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8576
num of homozygotes: 0

Latino
type: Population
allele count: 11
allele frequency: 9.585221331474381e-4
allele num: 11476
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16166
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.26e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.68e0

FS
type: SiteQuality
SIO_000300: 3.046e0

MQRankSum
type: SiteQuality
SIO_000300: -3.2e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.4e-2

VQSLOD
type: SiteQuality
SIO_000300: 6.11e-1

MQ
type: SiteQuality
SIO_000300: 5.956e1

DP
type: SiteQuality
SIO_000300: 1.560974e6

QD
type: SiteQuality
SIO_000300: 9.35e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.6e-3

GenotypeQuality
all individuals: 220
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 118
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2807
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variant carriers: 0

GenotypeQuality
all individuals: 64
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variant carriers: 0

GenotypeQuality
all individuals: 107
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 240
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variant carriers: 0

GenotypeQuality
all individuals: 30
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variant carriers: 0

GenotypeQuality
all individuals: 45767
bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65116
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.013993104846887e-4
allele num: 9862
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8504
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11430
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.06e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.25e-1

FS
type: SiteQuality
SIO_000300: 1.371e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.94e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.53e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.820000000000001e-1

DP
type: SiteQuality
SIO_000300: 1.531113e6

QD
type: SiteQuality
SIO_000300: 9.130000000000001e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

MQ
type: SiteQuality
SIO_000300: 5.921e1

GenotypeQuality
all individuals: 401
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6421
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3460
bin: 2.25e1
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GenotypeQuality
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bin: 7.25e1
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GenotypeQuality
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GenotypeQuality
all individuals: 88
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GenotypeQuality
all individuals: 637
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GenotypeQuality
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GenotypeQuality
all individuals: 1181
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GenotypeQuality
all individuals: 236
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variant carriers: 0

GenotypeQuality
all individuals: 541
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11400
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9796
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15404
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6582
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64844
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.181753722524226e-4
allele num: 8462
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.795e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.87e-1

DP
type: SiteQuality
SIO_000300: 1.516335e6

FS
type: SiteQuality
SIO_000300: 2.032e0

VQSLOD
type: SiteQuality
SIO_000300: -3.435e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 1.65e0

MQRankSum
type: SiteQuality
SIO_000300: -8.37e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.09e-1

GenotypeQuality
all individuals: 5952
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 233
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 719
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 634
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 255
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 107
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 193
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1142
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1214
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 1.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64082
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.352447930754666e-4
allele num: 14788
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11334
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8358
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9644
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 856
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6554
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.179e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -2.17e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.82e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.8e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.17e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.78e0

DP
type: SiteQuality
SIO_000300: 1.477449e6

GenotypeQuality
all individuals: 4836
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 147
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10269
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 485
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 313
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 985
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1017
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 183
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 626
bin: 9.75e1
variant carriers: 5

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13424
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7970
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 824
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61870
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 3.266550522648084e-4
allele num: 9184
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.821825469120058e-4
allele num: 10978
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6456
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.49e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.85e0

VQSLOD
type: SiteQuality
SIO_000300: 2.01e0

QD
type: SiteQuality
SIO_000300: 1.346e1

FS
type: SiteQuality
SIO_000300: 3.197e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.9e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.2e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.11e-1

DP
type: SiteQuality
SIO_000300: 1.3493e6

GenotypeQuality
all individuals: 3845
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 369
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 213
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 452
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 179
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 852
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 616
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 24084
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 492
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3542
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8710
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10532
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 786
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 59338
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7502
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6340
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 8.35282325425994e-5
allele num: 11972
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.163657e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.033e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.8e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.22e-1

FS
type: SiteQuality
SIO_000300: 1.83e0

VQSLOD
type: SiteQuality
SIO_000300: 7.89e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.78e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.799999999999999e-2

QD
type: SiteQuality
SIO_000300: 1.425e1

GenotypeQuality
all individuals: 837
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 296
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 12819
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 674
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 172
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 211
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1296
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variant carriers: 0

GenotypeQuality
all individuals: 2298
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variant carriers: 0

GenotypeQuality
all individuals: 4990
bin: 3.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10202
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 754
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6250
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 57040
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7168
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8322
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.354536950420954e-5
allele num: 10690
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 3.56e-1

DP
type: SiteQuality
SIO_000300: 1.023937e6

QD
type: SiteQuality
SIO_000300: 9.57e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.6e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -4.8e-2

MQRankSum
type: SiteQuality
SIO_000300: -3.37e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.11e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.33e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 15531
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7747
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12266
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 170
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1001
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5384
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 592
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variant carriers: 0

GenotypeQuality
all individuals: 5362
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 209
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 638
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6234
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 56534
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10086
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.408847562693716e-4
allele num: 7098
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10452
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 744
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8224
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.001375e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.204e0

VQSLOD
type: SiteQuality
SIO_000300: -3.322e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.269e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.2e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.476e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.6e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -1.202e0

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 5495
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 427
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6396
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1733
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8257
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 647
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 169
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1748
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8501
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 590
bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9882
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 716
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7976
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.994003597841295e-5
allele num: 10006
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6152
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 55212
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.01e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.67e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.9e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.67e0

DP
type: SiteQuality
SIO_000300: 9.60568e5

QD
type: SiteQuality
SIO_000300: 9.31e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.33e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.57e-1

GenotypeQuality
all individuals: 32538
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3269
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1131
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1812
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 410
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2024
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 550
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6417
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 718
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2190
bin: 9.75e1
variant carriers: 7

Latino
type: Population
allele count: 2
allele frequency: 1.763046544428773e-4
allele num: 11344
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8534
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6540
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 830
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11272
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.101448376391775e-5
allele num: 64486
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 2.919423900350331e-4
allele num: 10276
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.6e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 2.6e-2

QD
type: SiteQuality
SIO_000300: 1.395e1

VQSLOD
type: SiteQuality
SIO_000300: 3.43e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

MQRankSum
type: SiteQuality
SIO_000300: 2.08e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.412e0

FS
type: SiteQuality
SIO_000300: 8.72e-1

DP
type: SiteQuality
SIO_000300: 1.465206e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 1874
bin: 3.75e1
variant carriers: 1

GenotypeQuality
all individuals: 6374
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 281
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 294
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1930
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variant carriers: 0

GenotypeQuality
all individuals: 117
bin: 2.5e0
variant carriers: 1

GenotypeQuality
all individuals: 1937
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1186
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 544
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3378
bin: 2.25e1
variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10266
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.206554121151936e-5
allele num: 64448
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6544
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11336
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8524
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.768659356207994e-4
allele num: 11308
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.190476190476191e-3
allele num: 840
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.943e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

FS
type: SiteQuality
SIO_000300: 7.72e-1

QD
type: SiteQuality
SIO_000300: 1.113e1

DP
type: SiteQuality
SIO_000300: 1.478803e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.74e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.42e0

MQRankSum
type: SiteQuality
SIO_000300: -3.54e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.65e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.78e-1

GenotypeQuality
all individuals: 556
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 103
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3308
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 773
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6635
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2015
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variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 38039
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variant carriers: 0

GenotypeQuality
all individuals: 153
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variant carriers: 0

GenotypeQuality
all individuals: 1259
bin: 3.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11388
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64856
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10298
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6570
num of homozygotes: 0

South Asian
type: Population
allele count: 5
allele frequency: 4.23872499152255e-4
allele num: 11796
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 850
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.3e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.53e-1

QD
type: SiteQuality
SIO_000300: 1.282e1

VQSLOD
type: SiteQuality
SIO_000300: 8.83e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.1e-3

FS
type: SiteQuality
SIO_000300: 2.771e0

DP
type: SiteQuality
SIO_000300: 1.514365e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.12e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.01e-1

MQ
type: SiteQuality
SIO_000300: 5.934e1

GenotypeQuality
all individuals: 177
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 760
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 75
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 660
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2037
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2192
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 137
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1162
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 453
bin: 3.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65170
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 8.099789405475457e-5
allele num: 12346
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8604
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10316
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11442
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 862
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.845e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 1.19e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.7e-2

DP
type: SiteQuality
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MQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: -1.603e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.48e-1

QD
type: SiteQuality
SIO_000300: 1.501e1

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 864
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 12536
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10326
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11446
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.532661006038684e-5
allele num: 65246
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.939e1

FS
type: SiteQuality
SIO_000300: 1.652e0

MQRankSum
type: SiteQuality
SIO_000300: -8.02e-1

VQSLOD
type: SiteQuality
SIO_000300: -9.370000000000001e-2

DP
type: SiteQuality
SIO_000300: 1.543355e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.93e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.87e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.66e-1

QD
type: SiteQuality
SIO_000300: 9.039999999999999e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.656237929702588e-5
allele num: 10356
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11490
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65624
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13574
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.401e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.59e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.3e-3

VQSLOD
type: SiteQuality
SIO_000300: 4.54e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.881e0

DP
type: SiteQuality
SIO_000300: 1.565793e6

MQRankSum
type: SiteQuality
SIO_000300: -1.59e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.34e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11550
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.50073536032656e-5
allele num: 66634
num of homozygotes: 0

African
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allele count: 1
allele frequency: 9.609840476648087e-5
allele num: 10406
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.56e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.43e-2

DP
type: SiteQuality
SIO_000300: 1.711317e6

BaseQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 1.06e0

MQ
type: SiteQuality
SIO_000300: 5.855e1

FS
type: SiteQuality
SIO_000300: 4.99e-1

VQSLOD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -7.3e-2

QD
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16486
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.655011251514626e-5
allele num: 11554
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66632
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -2.62e0

MQRankSum
type: SiteQuality
SIO_000300: 1.01e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.4e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.47e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.973e0

DP
type: SiteQuality
SIO_000300: 1.711499e6

QD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -4.28e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11554
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

East Asian
type: Population
allele count: 5
allele frequency: 5.796429399489915e-4
allele num: 8626
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.712611e6

FS
type: SiteQuality
SIO_000300: 1.815e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.15e-2

MQ
type: SiteQuality
SIO_000300: 5.968e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.05e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.82e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.58e-1

BaseQRankSum
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SIO_000300: -2.292e0

MQRankSum
type: SiteQuality
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QD
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 10
allele frequency: 6.059137178865729e-4
allele num: 16504
num of homozygotes: 1

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66658
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.1e0

FS
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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MQ
type: SiteQuality
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ReadPosRankSum
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InbreedingCoeff
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MQRankSum
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BaseQRankSum
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QD
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DP
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
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allele frequency: 0.0e0
allele num: 16504
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Latino
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allele frequency: 1.730702665282105e-4
allele num: 11556
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66650
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East Asian
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allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

African
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ReadPosRankSum
type: SiteQuality
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FS
type: SiteQuality
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MQRankSum
type: SiteQuality
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MQ
type: SiteQuality
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VQSLOD
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BaseQRankSum
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InbreedingCoeff
type: SiteQuality
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ClippingRankSum
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QD
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DP
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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East Asian
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European (Finnish)
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allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.500375093773443e-5
allele num: 66650
num of homozygotes: 0

Latino
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num of homozygotes: 0

Other
type: Population
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QD
type: SiteQuality
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VQSLOD
type: SiteQuality
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DP
type: SiteQuality
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ClippingRankSum
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MQRankSum
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MQ
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FS
type: SiteQuality
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BaseQRankSum
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ReadPosRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 2
allele frequency: 1.921968095329617e-4
allele num: 10406
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
allele num: 11554
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.499925003749813e-5
allele num: 66670
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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InbreedingCoeff
type: SiteQuality
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MQ
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VQSLOD
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DP
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FS
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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QD
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MQRankSum
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BaseQRankSum
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11554
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.499655079331754e-5
allele num: 66682
num of homozygotes: 0

DP
type: SiteQuality
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FS
type: SiteQuality
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VQSLOD
type: SiteQuality
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MQ
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ClippingRankSum
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InbreedingCoeff
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QD
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BaseQRankSum
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ReadPosRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 9
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1232
bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11554
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.159285879897983e-4
allele num: 8626
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66688
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.912e0

VQSLOD
type: SiteQuality
SIO_000300: -4.582e-1

FS
type: SiteQuality
SIO_000300: 4.333e0

MQRankSum
type: SiteQuality
SIO_000300: 8.51e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.04e0

MQ
type: SiteQuality
SIO_000300: 5.977e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.621e0

QD
type: SiteQuality
SIO_000300: 1.06e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.06e-2

DP
type: SiteQuality
SIO_000300: 1.713068e6

GenotypeQuality
all individuals: 9
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1856
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1636
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 251
bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.159285879897983e-4
allele num: 8626
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11548
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.498560460652591e-5
allele num: 66688
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

DP
type: SiteQuality
SIO_000300: 1.713378e6

FS
type: SiteQuality
SIO_000300: 5.2e-1

MQ
type: SiteQuality
SIO_000300: 5.93e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.08e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.87e-1

QD
type: SiteQuality
SIO_000300: 1.211e1

VQSLOD
type: SiteQuality
SIO_000300: 1.68e0

MQRankSum
type: SiteQuality
SIO_000300: 6.51e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.22e0

GenotypeQuality
all individuals: 9
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8854
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 250
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 5
allele frequency: 4.804920238324044e-4
allele num: 10406
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66690
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.953e1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.15e-1

DP
type: SiteQuality
SIO_000300: 1.713462e6

QD
type: SiteQuality
SIO_000300: 1.499e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 2.65e0

MQRankSum
type: SiteQuality
SIO_000300: 1.08e-1

FS
type: SiteQuality
SIO_000300: 1.745e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.24e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.19e0

GenotypeQuality
all individuals: 1636
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8855
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 45723
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 302
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8628
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499385252046661e-5
allele num: 66694
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11550
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.256e0

QD
type: SiteQuality
SIO_000300: 3.453e1

DP
type: SiteQuality
SIO_000300: 1.713039e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

FS
type: SiteQuality
SIO_000300: 6.47e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.54e-1

MQ
type: SiteQuality
SIO_000300: 5.962e1

MQRankSum
type: SiteQuality
SIO_000300: 1.45e0

VQSLOD
type: SiteQuality
SIO_000300: -3.579e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.73e-1

GenotypeQuality
all individuals: 1634
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8853
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 730
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1222
bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 1
allele frequency: 8.659508139937652e-5
allele num: 11548
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66698
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8630
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.17e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.72e0

MQRankSum
type: SiteQuality
SIO_000300: 1.37e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.4e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.86e-1

DP
type: SiteQuality
SIO_000300: 1.713108e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
SIO_000300: 1.388e1

MQ
type: SiteQuality
SIO_000300: 5.977e1

GenotypeQuality
all individuals: 9
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 251
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 302
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8852
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1222
bin: 9.75e1
variant carriers: 4

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11548
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0