7-99711723-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99711723
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99711723
    reference: chr 7
allele count: 2
allele frequency: 1.647446457990115e-5
allele num: 121400
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106290
  ensembl transcript: ENST00000487288
  gene symbol: TAF6
  hgvsc: ENST00000487288.1:n.266A>G
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000428639
  ensembl transcript: ENST00000523306
  gene symbol: TAF6
  hgvsc: ENST00000523306.1:c.110A>G
  hgvsp: ENSP00000428639.1:p.Gln37Arg
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000410012
  ensembl transcript: ENST00000440225
  gene symbol: TAF6
  hgvsc: ENST00000440225.1:c.110A>G
  hgvsp: ENSP00000410012.1:p.Gln37Arg
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000406315
  ensembl transcript: ENST00000451699
  gene symbol: TAF6
  hgvsc: ENST00000451699.1:c.110A>G
  hgvsp: ENSP00000406315.1:p.Gln37Arg
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000399982
  ensembl transcript: ENST00000437822
  gene symbol: TAF6
  hgvsc: ENST00000437822.2:c.221A>G
  hgvsp: ENSP00000399982.2:p.Gln74Arg
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000390220
  ensembl transcript: ENST00000417349
  gene symbol: TAF6
  hgvsc: ENST00000417349.1:c.110A>G
  hgvsp: ENSP00000390220.1:p.Gln37Arg
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000413614
  ensembl transcript: ENST00000421980
  gene symbol: TAF6
  hgvsc: ENST00000421980.1:c.110A>G
  hgvsp: ENSP00000413614.1:p.Gln37Arg
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000419760
  ensembl transcript: ENST00000472509
  gene symbol: TAF6
  hgvsc: ENST00000472509.1:c.281A>G
  hgvsp: ENSP00000419760.1:p.Gln94Arg
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000416396
  ensembl transcript: ENST00000452041
  gene symbol: TAF6
  hgvsc: ENST00000452041.1:c.110A>G
  hgvsp: ENSP00000416396.1:p.Gln37Arg
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000407980
  ensembl transcript: ENST00000418432
  gene symbol: TAF6
  hgvsc: ENST00000418432.2:c.-62A>G
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000390073
  ensembl transcript: ENST00000449571
  gene symbol: TAF6
  hgvsc: ENST00000449571.1:c.110A>G
  hgvsp: ENSP00000390073.1:p.Gln37Arg
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000428071
  ensembl transcript: ENST00000520135
  gene symbol: TAF6
  hgvsc: ENST00000520135.1:c.110A>G
  hgvsp: ENSP00000428071.1:p.Gln37Arg
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000344537
  ensembl transcript: ENST00000344095
  gene symbol: TAF6
  hgvsc: ENST00000344095.4:c.110A>G
  hgvsp: ENSP00000344537.4:p.Gln37Arg
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000419555
  ensembl transcript: ENST00000493322
  gene symbol: TAF6
  hgvsc: ENST00000493322.1:c.110A>G
  hgvsp: ENSP00000419555.1:p.Gln37Arg
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000412346
  ensembl transcript: ENST00000452438
  gene symbol: TAF6
  hgvsc: ENST00000452438.2:c.110A>G
  hgvsp: ENSP00000412346.2:p.Gln37Arg
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000389575
  ensembl transcript: ENST00000453269
  gene symbol: TAF6
  hgvsc: ENST00000453269.2:c.110A>G
  hgvsp: ENSP00000389575.2:p.Gln37Arg
  variant of: http://identifiers.org/hgnc/11540
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2707
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16302
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gln74Arg
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: Other
population: South Asian
population: African
population: European (Finnish)
population: East Asian
reference allele: T
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum

7-99711726-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99711726
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99711726
    reference: chr 7
allele count: 37
allele frequency: 3.047725737632e-4
allele num: 121402
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000413614
  ensembl transcript: ENST00000421980
  gene symbol: TAF6
  hgvsc: ENST00000421980.1:c.107G>C
  hgvsp: ENSP00000413614.1:p.Cys36Ser
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000390220
  ensembl transcript: ENST00000417349
  gene symbol: TAF6
  hgvsc: ENST00000417349.1:c.107G>C
  hgvsp: ENSP00000390220.1:p.Cys36Ser
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000428071
  ensembl transcript: ENST00000520135
  gene symbol: TAF6
  hgvsc: ENST00000520135.1:c.107G>C
  hgvsp: ENSP00000428071.1:p.Cys36Ser
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000410012
  ensembl transcript: ENST00000440225
  gene symbol: TAF6
  hgvsc: ENST00000440225.1:c.107G>C
  hgvsp: ENSP00000410012.1:p.Cys36Ser
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000389575
  ensembl transcript: ENST00000453269
  gene symbol: TAF6
  hgvsc: ENST00000453269.2:c.107G>C
  hgvsp: ENSP00000389575.2:p.Cys36Ser
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000407980
  ensembl transcript: ENST00000418432
  gene symbol: TAF6
  hgvsc: ENST00000418432.2:c.-65G>C
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000399982
  ensembl transcript: ENST00000437822
  gene symbol: TAF6
  hgvsc: ENST00000437822.2:c.218G>C
  hgvsp: ENSP00000399982.2:p.Cys73Ser
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000419760
  ensembl transcript: ENST00000472509
  gene symbol: TAF6
  hgvsc: ENST00000472509.1:c.278G>C
  hgvsp: ENSP00000419760.1:p.Cys93Ser
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000390073
  ensembl transcript: ENST00000449571
  gene symbol: TAF6
  hgvsc: ENST00000449571.1:c.107G>C
  hgvsp: ENSP00000390073.1:p.Cys36Ser
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000428639
  ensembl transcript: ENST00000523306
  gene symbol: TAF6
  hgvsc: ENST00000523306.1:c.107G>C
  hgvsp: ENSP00000428639.1:p.Cys36Ser
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000406315
  ensembl transcript: ENST00000451699
  gene symbol: TAF6
  hgvsc: ENST00000451699.1:c.107G>C
  hgvsp: ENSP00000406315.1:p.Cys36Ser
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000416396
  ensembl transcript: ENST00000452041
  gene symbol: TAF6
  hgvsc: ENST00000452041.1:c.107G>C
  hgvsp: ENSP00000416396.1:p.Cys36Ser
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000419555
  ensembl transcript: ENST00000493322
  gene symbol: TAF6
  hgvsc: ENST00000493322.1:c.107G>C
  hgvsp: ENSP00000419555.1:p.Cys36Ser
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106290
  ensembl transcript: ENST00000487288
  gene symbol: TAF6
  hgvsc: ENST00000487288.1:n.263G>C
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000344537
  ensembl transcript: ENST00000344095
  gene symbol: TAF6
  hgvsc: ENST00000344095.4:c.107G>C
  hgvsp: ENSP00000344537.4:p.Cys36Ser
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000412346
  ensembl transcript: ENST00000452438
  gene symbol: TAF6
  hgvsc: ENST00000452438.2:c.107G>C
  hgvsp: ENSP00000412346.2:p.Cys36Ser
  variant of: http://identifiers.org/hgnc/11540
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8914
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Cys73Ser
num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum

7-99711740-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99711740
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99711740
    reference: chr 7
allele count: 1
allele frequency: 8.236960890909689e-6
allele num: 121404
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000389575
  ensembl transcript: ENST00000453269
  gene symbol: TAF6
  hgvsc: ENST00000453269.2:c.93T>C
  hgvsp: ENST00000453269.2:c.93T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000399982
  ensembl transcript: ENST00000437822
  gene symbol: TAF6
  hgvsc: ENST00000437822.2:c.204T>C
  hgvsp: ENST00000437822.2:c.204T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000416396
  ensembl transcript: ENST00000452041
  gene symbol: TAF6
  hgvsc: ENST00000452041.1:c.93T>C
  hgvsp: ENST00000452041.1:c.93T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000406315
  ensembl transcript: ENST00000451699
  gene symbol: TAF6
  hgvsc: ENST00000451699.1:c.93T>C
  hgvsp: ENST00000451699.1:c.93T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000419760
  ensembl transcript: ENST00000472509
  gene symbol: TAF6
  hgvsc: ENST00000472509.1:c.264T>C
  hgvsp: ENST00000472509.1:c.264T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000419555
  ensembl transcript: ENST00000493322
  gene symbol: TAF6
  hgvsc: ENST00000493322.1:c.93T>C
  hgvsp: ENST00000493322.1:c.93T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000390073
  ensembl transcript: ENST00000449571
  gene symbol: TAF6
  hgvsc: ENST00000449571.1:c.93T>C
  hgvsp: ENST00000449571.1:c.93T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000344537
  ensembl transcript: ENST00000344095
  gene symbol: TAF6
  hgvsc: ENST00000344095.4:c.93T>C
  hgvsp: ENST00000344095.4:c.93T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000413614
  ensembl transcript: ENST00000421980
  gene symbol: TAF6
  hgvsc: ENST00000421980.1:c.93T>C
  hgvsp: ENST00000421980.1:c.93T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000428639
  ensembl transcript: ENST00000523306
  gene symbol: TAF6
  hgvsc: ENST00000523306.1:c.93T>C
  hgvsp: ENST00000523306.1:c.93T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000390220
  ensembl transcript: ENST00000417349
  gene symbol: TAF6
  hgvsc: ENST00000417349.1:c.93T>C
  hgvsp: ENST00000417349.1:c.93T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000407980
  ensembl transcript: ENST00000418432
  gene symbol: TAF6
  hgvsc: ENST00000418432.2:c.-79T>C
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000410012
  ensembl transcript: ENST00000440225
  gene symbol: TAF6
  hgvsc: ENST00000440225.1:c.93T>C
  hgvsp: ENST00000440225.1:c.93T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000428071
  ensembl transcript: ENST00000520135
  gene symbol: TAF6
  hgvsc: ENST00000520135.1:c.93T>C
  hgvsp: ENST00000520135.1:c.93T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000412346
  ensembl transcript: ENST00000452438
  gene symbol: TAF6
  hgvsc: ENST00000452438.2:c.93T>C
  hgvsp: ENST00000452438.2:c.93T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106290
  ensembl transcript: ENST00000487288
  gene symbol: TAF6
  hgvsc: ENST00000487288.1:n.249T>C
  variant of: http://identifiers.org/hgnc/11540
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16315
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2709
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ile68Ile
num of homozygotes: 0
population: South Asian
population: Latino
population: East Asian
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD

7-99711745-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99711745
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99711745
    reference: chr 7
allele count: 1
allele frequency: 8.236960890909689e-6
allele num: 121404
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000344537
  ensembl transcript: ENST00000344095
  gene symbol: TAF6
  hgvsc: ENST00000344095.4:c.88C>G
  hgvsp: ENSP00000344537.4:p.Gln30Glu
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000390220
  ensembl transcript: ENST00000417349
  gene symbol: TAF6
  hgvsc: ENST00000417349.1:c.88C>G
  hgvsp: ENSP00000390220.1:p.Gln30Glu
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106290
  ensembl transcript: ENST00000487288
  gene symbol: TAF6
  hgvsc: ENST00000487288.1:n.244C>G
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000428071
  ensembl transcript: ENST00000520135
  gene symbol: TAF6
  hgvsc: ENST00000520135.1:c.88C>G
  hgvsp: ENSP00000428071.1:p.Gln30Glu
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000399982
  ensembl transcript: ENST00000437822
  gene symbol: TAF6
  hgvsc: ENST00000437822.2:c.199C>G
  hgvsp: ENSP00000399982.2:p.Gln67Glu
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000419555
  ensembl transcript: ENST00000493322
  gene symbol: TAF6
  hgvsc: ENST00000493322.1:c.88C>G
  hgvsp: ENSP00000419555.1:p.Gln30Glu
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000416396
  ensembl transcript: ENST00000452041
  gene symbol: TAF6
  hgvsc: ENST00000452041.1:c.88C>G
  hgvsp: ENSP00000416396.1:p.Gln30Glu
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000406315
  ensembl transcript: ENST00000451699
  gene symbol: TAF6
  hgvsc: ENST00000451699.1:c.88C>G
  hgvsp: ENSP00000406315.1:p.Gln30Glu
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000412346
  ensembl transcript: ENST00000452438
  gene symbol: TAF6
  hgvsc: ENST00000452438.2:c.88C>G
  hgvsp: ENSP00000412346.2:p.Gln30Glu
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000419760
  ensembl transcript: ENST00000472509
  gene symbol: TAF6
  hgvsc: ENST00000472509.1:c.259C>G
  hgvsp: ENSP00000419760.1:p.Gln87Glu
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000428639
  ensembl transcript: ENST00000523306
  gene symbol: TAF6
  hgvsc: ENST00000523306.1:c.88C>G
  hgvsp: ENSP00000428639.1:p.Gln30Glu
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000389575
  ensembl transcript: ENST00000453269
  gene symbol: TAF6
  hgvsc: ENST00000453269.2:c.88C>G
  hgvsp: ENSP00000389575.2:p.Gln30Glu
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000407980
  ensembl transcript: ENST00000418432
  gene symbol: TAF6
  hgvsc: ENST00000418432.2:c.-84C>G
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000410012
  ensembl transcript: ENST00000440225
  gene symbol: TAF6
  hgvsc: ENST00000440225.1:c.88C>G
  hgvsp: ENSP00000410012.1:p.Gln30Glu
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000390073
  ensembl transcript: ENST00000449571
  gene symbol: TAF6
  hgvsc: ENST00000449571.1:c.88C>G
  hgvsp: ENSP00000390073.1:p.Gln30Glu
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000413614
  ensembl transcript: ENST00000421980
  gene symbol: TAF6
  hgvsc: ENST00000421980.1:c.88C>G
  hgvsp: ENSP00000413614.1:p.Gln30Glu
  variant of: http://identifiers.org/hgnc/11540
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gln67Glu
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: Latino
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum

7-99711748-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99711748
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99711748
    reference: chr 7
allele count: 1
allele frequency: 8.236960890909689e-6
allele num: 121404
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000406315
  ensembl transcript: ENST00000451699
  gene symbol: TAF6
  hgvsc: ENST00000451699.1:c.85G>C
  hgvsp: ENSP00000406315.1:p.Ala29Pro
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000407980
  ensembl transcript: ENST00000418432
  gene symbol: TAF6
  hgvsc: ENST00000418432.2:c.-87G>C
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000428071
  ensembl transcript: ENST00000520135
  gene symbol: TAF6
  hgvsc: ENST00000520135.1:c.85G>C
  hgvsp: ENSP00000428071.1:p.Ala29Pro
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000412346
  ensembl transcript: ENST00000452438
  gene symbol: TAF6
  hgvsc: ENST00000452438.2:c.85G>C
  hgvsp: ENSP00000412346.2:p.Ala29Pro
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106290
  ensembl transcript: ENST00000487288
  gene symbol: TAF6
  hgvsc: ENST00000487288.1:n.241G>C
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000410012
  ensembl transcript: ENST00000440225
  gene symbol: TAF6
  hgvsc: ENST00000440225.1:c.85G>C
  hgvsp: ENSP00000410012.1:p.Ala29Pro
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000399982
  ensembl transcript: ENST00000437822
  gene symbol: TAF6
  hgvsc: ENST00000437822.2:c.196G>C
  hgvsp: ENSP00000399982.2:p.Ala66Pro
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000428639
  ensembl transcript: ENST00000523306
  gene symbol: TAF6
  hgvsc: ENST00000523306.1:c.85G>C
  hgvsp: ENSP00000428639.1:p.Ala29Pro
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000413614
  ensembl transcript: ENST00000421980
  gene symbol: TAF6
  hgvsc: ENST00000421980.1:c.85G>C
  hgvsp: ENSP00000413614.1:p.Ala29Pro
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000419555
  ensembl transcript: ENST00000493322
  gene symbol: TAF6
  hgvsc: ENST00000493322.1:c.85G>C
  hgvsp: ENSP00000419555.1:p.Ala29Pro
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000419760
  ensembl transcript: ENST00000472509
  gene symbol: TAF6
  hgvsc: ENST00000472509.1:c.256G>C
  hgvsp: ENSP00000419760.1:p.Ala86Pro
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000389575
  ensembl transcript: ENST00000453269
  gene symbol: TAF6
  hgvsc: ENST00000453269.2:c.85G>C
  hgvsp: ENSP00000389575.2:p.Ala29Pro
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000390073
  ensembl transcript: ENST00000449571
  gene symbol: TAF6
  hgvsc: ENST00000449571.1:c.85G>C
  hgvsp: ENSP00000390073.1:p.Ala29Pro
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000416396
  ensembl transcript: ENST00000452041
  gene symbol: TAF6
  hgvsc: ENST00000452041.1:c.85G>C
  hgvsp: ENSP00000416396.1:p.Ala29Pro
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000344537
  ensembl transcript: ENST00000344095
  gene symbol: TAF6
  hgvsc: ENST00000344095.4:c.85G>C
  hgvsp: ENSP00000344537.4:p.Ala29Pro
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000390220
  ensembl transcript: ENST00000417349
  gene symbol: TAF6
  hgvsc: ENST00000417349.1:c.85G>C
  hgvsp: ENSP00000390220.1:p.Ala29Pro
  variant of: http://identifiers.org/hgnc/11540
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala66Pro
num of homozygotes: 0
population: South Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Other
population: Latino
reference allele: C
site quality: MQ
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum

7-99711757-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99711757
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99711757
    reference: chr 7
allele count: 165
allele frequency: 1.35905376910912e-3
allele num: 121408
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000406315
  ensembl transcript: ENST00000451699
  gene symbol: TAF6
  hgvsc: ENST00000451699.1:c.76A>T
  hgvsp: ENSP00000406315.1:p.Met26Leu
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000399982
  ensembl transcript: ENST00000437822
  gene symbol: TAF6
  hgvsc: ENST00000437822.2:c.187A>T
  hgvsp: ENSP00000399982.2:p.Met63Leu
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000419555
  ensembl transcript: ENST00000493322
  gene symbol: TAF6
  hgvsc: ENST00000493322.1:c.76A>T
  hgvsp: ENSP00000419555.1:p.Met26Leu
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000390073
  ensembl transcript: ENST00000449571
  gene symbol: TAF6
  hgvsc: ENST00000449571.1:c.76A>T
  hgvsp: ENSP00000390073.1:p.Met26Leu
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000428639
  ensembl transcript: ENST00000523306
  gene symbol: TAF6
  hgvsc: ENST00000523306.1:c.76A>T
  hgvsp: ENSP00000428639.1:p.Met26Leu
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000419760
  ensembl transcript: ENST00000472509
  gene symbol: TAF6
  hgvsc: ENST00000472509.1:c.247A>T
  hgvsp: ENSP00000419760.1:p.Met83Leu
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000416396
  ensembl transcript: ENST00000452041
  gene symbol: TAF6
  hgvsc: ENST00000452041.1:c.76A>T
  hgvsp: ENSP00000416396.1:p.Met26Leu
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000407980
  ensembl transcript: ENST00000418432
  gene symbol: TAF6
  hgvsc: ENST00000418432.2:c.-96A>T
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000390220
  ensembl transcript: ENST00000417349
  gene symbol: TAF6
  hgvsc: ENST00000417349.1:c.76A>T
  hgvsp: ENSP00000390220.1:p.Met26Leu
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000428071
  ensembl transcript: ENST00000520135
  gene symbol: TAF6
  hgvsc: ENST00000520135.1:c.76A>T
  hgvsp: ENSP00000428071.1:p.Met26Leu
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000412346
  ensembl transcript: ENST00000452438
  gene symbol: TAF6
  hgvsc: ENST00000452438.2:c.76A>T
  hgvsp: ENSP00000412346.2:p.Met26Leu
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000389575
  ensembl transcript: ENST00000453269
  gene symbol: TAF6
  hgvsc: ENST00000453269.2:c.76A>T
  hgvsp: ENSP00000389575.2:p.Met26Leu
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106290
  ensembl transcript: ENST00000487288
  gene symbol: TAF6
  hgvsc: ENST00000487288.1:n.232A>T
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000413614
  ensembl transcript: ENST00000421980
  gene symbol: TAF6
  hgvsc: ENST00000421980.1:c.76A>T
  hgvsp: ENSP00000413614.1:p.Met26Leu
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000410012
  ensembl transcript: ENST00000440225
  gene symbol: TAF6
  hgvsc: ENST00000440225.1:c.76A>T
  hgvsp: ENSP00000410012.1:p.Met26Leu
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000344537
  ensembl transcript: ENST00000344095
  gene symbol: TAF6
  hgvsc: ENST00000344095.4:c.76A>T
  hgvsp: ENSP00000344537.4:p.Met26Leu
  variant of: http://identifiers.org/hgnc/11540
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2699
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Met63Leu
num of homozygotes: 0
population: Latino
population: South Asian
population: Other
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
reference allele: T
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum

http://identifiers.org/exac.variant/7-99711771-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99711771
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99711771
    reference: chr 7
allele count: 1
allele frequency: 8.236825198095647e-6
allele num: 121406
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000419555
  ensembl transcript: ENST00000493322
  gene symbol: TAF6
  hgvsc: ENST00000493322.1:c.62T>G
  hgvsp: ENSP00000419555.1:p.Val21Gly
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000390220
  ensembl transcript: ENST00000417349
  gene symbol: TAF6
  hgvsc: ENST00000417349.1:c.62T>G
  hgvsp: ENSP00000390220.1:p.Val21Gly
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000410012
  ensembl transcript: ENST00000440225
  gene symbol: TAF6
  hgvsc: ENST00000440225.1:c.62T>G
  hgvsp: ENSP00000410012.1:p.Val21Gly
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000428639
  ensembl transcript: ENST00000523306
  gene symbol: TAF6
  hgvsc: ENST00000523306.1:c.62T>G
  hgvsp: ENSP00000428639.1:p.Val21Gly
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000389575
  ensembl transcript: ENST00000453269
  gene symbol: TAF6
  hgvsc: ENST00000453269.2:c.62T>G
  hgvsp: ENSP00000389575.2:p.Val21Gly
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000406315
  ensembl transcript: ENST00000451699
  gene symbol: TAF6
  hgvsc: ENST00000451699.1:c.62T>G
  hgvsp: ENSP00000406315.1:p.Val21Gly
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000407980
  ensembl transcript: ENST00000418432
  gene symbol: TAF6
  hgvsc: ENST00000418432.2:c.-110T>G
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000419760
  ensembl transcript: ENST00000472509
  gene symbol: TAF6
  hgvsc: ENST00000472509.1:c.233T>G
  hgvsp: ENSP00000419760.1:p.Val78Gly
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000413614
  ensembl transcript: ENST00000421980
  gene symbol: TAF6
  hgvsc: ENST00000421980.1:c.62T>G
  hgvsp: ENSP00000413614.1:p.Val21Gly
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000416396
  ensembl transcript: ENST00000452041
  gene symbol: TAF6
  hgvsc: ENST00000452041.1:c.62T>G
  hgvsp: ENSP00000416396.1:p.Val21Gly
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106290
  ensembl transcript: ENST00000487288
  gene symbol: TAF6
  hgvsc: ENST00000487288.1:n.218T>G
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000399982
  ensembl transcript: ENST00000437822
  gene symbol: TAF6
  hgvsc: ENST00000437822.2:c.173T>G
  hgvsp: ENSP00000399982.2:p.Val58Gly
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000344537
  ensembl transcript: ENST00000344095
  gene symbol: TAF6
  hgvsc: ENST00000344095.4:c.62T>G
  hgvsp: ENSP00000344537.4:p.Val21Gly
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000390073
  ensembl transcript: ENST00000449571
  gene symbol: TAF6
  hgvsc: ENST00000449571.1:c.62T>G
  hgvsp: ENSP00000390073.1:p.Val21Gly
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000412346
  ensembl transcript: ENST00000452438
  gene symbol: TAF6
  hgvsc: ENST00000452438.2:c.62T>G
  hgvsp: ENSP00000412346.2:p.Val21Gly
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000428071
  ensembl transcript: ENST00000520135
  gene symbol: TAF6
  hgvsc: ENST00000520135.1:c.62T>G
  hgvsp: ENSP00000428071.1:p.Val21Gly
  variant of: http://identifiers.org/hgnc/11540
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8943
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2707
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val58Gly
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: African
population: East Asian
reference allele: A
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum

7-99711785-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99711785
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99711785
    reference: chr 7
allele count: 9
allele frequency: 7.413020558777017e-5
allele num: 121408
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000410012
  ensembl transcript: ENST00000440225
  gene symbol: TAF6
  hgvsc: ENST00000440225.1:c.48G>C
  hgvsp: ENST00000440225.1:c.48G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000344537
  ensembl transcript: ENST00000344095
  gene symbol: TAF6
  hgvsc: ENST00000344095.4:c.48G>C
  hgvsp: ENST00000344095.4:c.48G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000389575
  ensembl transcript: ENST00000453269
  gene symbol: TAF6
  hgvsc: ENST00000453269.2:c.48G>C
  hgvsp: ENST00000453269.2:c.48G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000419555
  ensembl transcript: ENST00000493322
  gene symbol: TAF6
  hgvsc: ENST00000493322.1:c.48G>C
  hgvsp: ENST00000493322.1:c.48G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000390220
  ensembl transcript: ENST00000417349
  gene symbol: TAF6
  hgvsc: ENST00000417349.1:c.48G>C
  hgvsp: ENST00000417349.1:c.48G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000390073
  ensembl transcript: ENST00000449571
  gene symbol: TAF6
  hgvsc: ENST00000449571.1:c.48G>C
  hgvsp: ENST00000449571.1:c.48G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000399982
  ensembl transcript: ENST00000437822
  gene symbol: TAF6
  hgvsc: ENST00000437822.2:c.159G>C
  hgvsp: ENST00000437822.2:c.159G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106290
  ensembl transcript: ENST00000487288
  gene symbol: TAF6
  hgvsc: ENST00000487288.1:n.204G>C
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000406315
  ensembl transcript: ENST00000451699
  gene symbol: TAF6
  hgvsc: ENST00000451699.1:c.48G>C
  hgvsp: ENST00000451699.1:c.48G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000416396
  ensembl transcript: ENST00000452041
  gene symbol: TAF6
  hgvsc: ENST00000452041.1:c.48G>C
  hgvsp: ENST00000452041.1:c.48G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000419760
  ensembl transcript: ENST00000472509
  gene symbol: TAF6
  hgvsc: ENST00000472509.1:c.219G>C
  hgvsp: ENST00000472509.1:c.219G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000413614
  ensembl transcript: ENST00000421980
  gene symbol: TAF6
  hgvsc: ENST00000421980.1:c.48G>C
  hgvsp: ENST00000421980.1:c.48G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000407980
  ensembl transcript: ENST00000418432
  gene symbol: TAF6
  hgvsc: ENST00000418432.2:c.-124G>C
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000412346
  ensembl transcript: ENST00000452438
  gene symbol: TAF6
  hgvsc: ENST00000452438.2:c.48G>C
  hgvsp: ENST00000452438.2:c.48G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000428071
  ensembl transcript: ENST00000520135
  gene symbol: TAF6
  hgvsc: ENST00000520135.1:c.48G>C
  hgvsp: ENST00000520135.1:c.48G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000428639
  ensembl transcript: ENST00000523306
  gene symbol: TAF6
  hgvsc: ENST00000523306.1:c.48G>C
  hgvsp: ENST00000523306.1:c.48G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11540
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 9.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8943
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser53Ser
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
population: European (Finnish)
population: East Asian
reference allele: C
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: FS

7-99711788-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99711788
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99711788
    reference: chr 7
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000406315
  ensembl transcript: ENST00000451699
  gene symbol: TAF6
  hgvsc: ENST00000451699.1:c.45C>T
  hgvsp: ENST00000451699.1:c.45C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000416396
  ensembl transcript: ENST00000452041
  gene symbol: TAF6
  hgvsc: ENST00000452041.1:c.45C>T
  hgvsp: ENST00000452041.1:c.45C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000407980
  ensembl transcript: ENST00000418432
  gene symbol: TAF6
  hgvsc: ENST00000418432.2:c.-127C>T
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106290
  ensembl transcript: ENST00000487288
  gene symbol: TAF6
  hgvsc: ENST00000487288.1:n.201C>T
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000428639
  ensembl transcript: ENST00000523306
  gene symbol: TAF6
  hgvsc: ENST00000523306.1:c.45C>T
  hgvsp: ENST00000523306.1:c.45C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000390220
  ensembl transcript: ENST00000417349
  gene symbol: TAF6
  hgvsc: ENST00000417349.1:c.45C>T
  hgvsp: ENST00000417349.1:c.45C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000389575
  ensembl transcript: ENST00000453269
  gene symbol: TAF6
  hgvsc: ENST00000453269.2:c.45C>T
  hgvsp: ENST00000453269.2:c.45C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000390073
  ensembl transcript: ENST00000449571
  gene symbol: TAF6
  hgvsc: ENST00000449571.1:c.45C>T
  hgvsp: ENST00000449571.1:c.45C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000344537
  ensembl transcript: ENST00000344095
  gene symbol: TAF6
  hgvsc: ENST00000344095.4:c.45C>T
  hgvsp: ENST00000344095.4:c.45C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000413614
  ensembl transcript: ENST00000421980
  gene symbol: TAF6
  hgvsc: ENST00000421980.1:c.45C>T
  hgvsp: ENST00000421980.1:c.45C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000399982
  ensembl transcript: ENST00000437822
  gene symbol: TAF6
  hgvsc: ENST00000437822.2:c.156C>T
  hgvsp: ENST00000437822.2:c.156C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000419760
  ensembl transcript: ENST00000472509
  gene symbol: TAF6
  hgvsc: ENST00000472509.1:c.216C>T
  hgvsp: ENST00000472509.1:c.216C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000412346
  ensembl transcript: ENST00000452438
  gene symbol: TAF6
  hgvsc: ENST00000452438.2:c.45C>T
  hgvsp: ENST00000452438.2:c.45C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000419555
  ensembl transcript: ENST00000493322
  gene symbol: TAF6
  hgvsc: ENST00000493322.1:c.45C>T
  hgvsp: ENST00000493322.1:c.45C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000410012
  ensembl transcript: ENST00000440225
  gene symbol: TAF6
  hgvsc: ENST00000440225.1:c.45C>T
  hgvsp: ENST00000440225.1:c.45C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000428071
  ensembl transcript: ENST00000520135
  gene symbol: TAF6
  hgvsc: ENST00000520135.1:c.45C>T
  hgvsp: ENST00000520135.1:c.45C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11540
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro52Pro
num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum

7-99711799-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99711799
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99711799
    reference: chr 7
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000344537
  ensembl transcript: ENST00000344095
  gene symbol: TAF6
  hgvsc: ENST00000344095.4:c.34A>G
  hgvsp: ENSP00000344537.4:p.Thr12Ala
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000413614
  ensembl transcript: ENST00000421980
  gene symbol: TAF6
  hgvsc: ENST00000421980.1:c.34A>G
  hgvsp: ENSP00000413614.1:p.Thr12Ala
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000410012
  ensembl transcript: ENST00000440225
  gene symbol: TAF6
  hgvsc: ENST00000440225.1:c.34A>G
  hgvsp: ENSP00000410012.1:p.Thr12Ala
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000412346
  ensembl transcript: ENST00000452438
  gene symbol: TAF6
  hgvsc: ENST00000452438.2:c.34A>G
  hgvsp: ENSP00000412346.2:p.Thr12Ala
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000428639
  ensembl transcript: ENST00000523306
  gene symbol: TAF6
  hgvsc: ENST00000523306.1:c.34A>G
  hgvsp: ENSP00000428639.1:p.Thr12Ala
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000389575
  ensembl transcript: ENST00000453269
  gene symbol: TAF6
  hgvsc: ENST00000453269.2:c.34A>G
  hgvsp: ENSP00000389575.2:p.Thr12Ala
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000390220
  ensembl transcript: ENST00000417349
  gene symbol: TAF6
  hgvsc: ENST00000417349.1:c.34A>G
  hgvsp: ENSP00000390220.1:p.Thr12Ala
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000407980
  ensembl transcript: ENST00000418432
  gene symbol: TAF6
  hgvsc: ENST00000418432.2:c.-138A>G
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000419760
  ensembl transcript: ENST00000472509
  gene symbol: TAF6
  hgvsc: ENST00000472509.1:c.205A>G
  hgvsp: ENSP00000419760.1:p.Thr69Ala
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000390073
  ensembl transcript: ENST00000449571
  gene symbol: TAF6
  hgvsc: ENST00000449571.1:c.34A>G
  hgvsp: ENSP00000390073.1:p.Thr12Ala
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000406315
  ensembl transcript: ENST00000451699
  gene symbol: TAF6
  hgvsc: ENST00000451699.1:c.34A>G
  hgvsp: ENSP00000406315.1:p.Thr12Ala
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000395627
  ensembl transcript: ENST00000431404
  gene symbol: TAF6
  hgvsc: ENST00000431404.2:c.34A>G
  hgvsp: ENSP00000395627.2:p.Thr12Ala
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000416396
  ensembl transcript: ENST00000452041
  gene symbol: TAF6
  hgvsc: ENST00000452041.1:c.34A>G
  hgvsp: ENSP00000416396.1:p.Thr12Ala
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000428071
  ensembl transcript: ENST00000520135
  gene symbol: TAF6
  hgvsc: ENST00000520135.1:c.34A>G
  hgvsp: ENSP00000428071.1:p.Thr12Ala
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106290
  ensembl transcript: ENST00000487288
  gene symbol: TAF6
  hgvsc: ENST00000487288.1:n.190A>G
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000419555
  ensembl transcript: ENST00000493322
  gene symbol: TAF6
  hgvsc: ENST00000493322.1:c.34A>G
  hgvsp: ENSP00000419555.1:p.Thr12Ala
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000399982
  ensembl transcript: ENST00000437822
  gene symbol: TAF6
  hgvsc: ENST00000437822.2:c.145A>G
  hgvsp: ENSP00000399982.2:p.Thr49Ala
  variant of: http://identifiers.org/hgnc/11540
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2706
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16358
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr49Ala
num of homozygotes: 0
population: Other
population: African
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: T
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD

7-99711799-TGTTGCTAAG-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99711799
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99711790
    reference: chr 7
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000428639
  ensembl transcript: ENST00000523306
  gene symbol: TAF6
  hgvsc: ENST00000523306.1:c.25_33delCTTAGCAAC
  hgvsp: ENSP00000428639.1:p.Leu9_Asn11del
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000390073
  ensembl transcript: ENST00000449571
  gene symbol: TAF6
  hgvsc: ENST00000449571.1:c.25_33delCTTAGCAAC
  hgvsp: ENSP00000390073.1:p.Leu9_Asn11del
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000419760
  ensembl transcript: ENST00000472509
  gene symbol: TAF6
  hgvsc: ENST00000472509.1:c.196_204delCTTAGCAAC
  hgvsp: ENSP00000419760.1:p.Leu66_Asn68del
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000395627
  ensembl transcript: ENST00000431404
  gene symbol: TAF6
  hgvsc: ENST00000431404.2:c.25_33delCTTAGCAAC
  hgvsp: ENSP00000395627.2:p.Leu9_Asn11del
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000412346
  ensembl transcript: ENST00000452438
  gene symbol: TAF6
  hgvsc: ENST00000452438.2:c.25_33delCTTAGCAAC
  hgvsp: ENSP00000412346.2:p.Leu9_Asn11del
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000413614
  ensembl transcript: ENST00000421980
  gene symbol: TAF6
  hgvsc: ENST00000421980.1:c.25_33delCTTAGCAAC
  hgvsp: ENSP00000413614.1:p.Leu9_Asn11del
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000399982
  ensembl transcript: ENST00000437822
  gene symbol: TAF6
  hgvsc: ENST00000437822.2:c.136_144delCTTAGCAAC
  hgvsp: ENSP00000399982.2:p.Leu46_Asn48del
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: coding_sequence_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000427710
  ensembl transcript: ENST00000460673
  gene symbol: TAF6
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000406315
  ensembl transcript: ENST00000451699
  gene symbol: TAF6
  hgvsc: ENST00000451699.1:c.25_33delCTTAGCAAC
  hgvsp: ENSP00000406315.1:p.Leu9_Asn11del
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000416396
  ensembl transcript: ENST00000452041
  gene symbol: TAF6
  hgvsc: ENST00000452041.1:c.25_33delCTTAGCAAC
  hgvsp: ENSP00000416396.1:p.Leu9_Asn11del
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000344537
  ensembl transcript: ENST00000344095
  gene symbol: TAF6
  hgvsc: ENST00000344095.4:c.25_33delCTTAGCAAC
  hgvsp: ENSP00000344537.4:p.Leu9_Asn11del
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000419555
  ensembl transcript: ENST00000493322
  gene symbol: TAF6
  hgvsc: ENST00000493322.1:c.25_33delCTTAGCAAC
  hgvsp: ENSP00000419555.1:p.Leu9_Asn11del
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000410012
  ensembl transcript: ENST00000440225
  gene symbol: TAF6
  hgvsc: ENST00000440225.1:c.25_33delCTTAGCAAC
  hgvsp: ENSP00000410012.1:p.Leu9_Asn11del
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000390220
  ensembl transcript: ENST00000417349
  gene symbol: TAF6
  hgvsc: ENST00000417349.1:c.25_33delCTTAGCAAC
  hgvsp: ENSP00000390220.1:p.Leu9_Asn11del
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106290
  ensembl transcript: ENST00000487288
  gene symbol: TAF6
  hgvsc: ENST00000487288.1:n.181_189delCTTAGCAAC
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000407980
  ensembl transcript: ENST00000418432
  gene symbol: TAF6
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000389575
  ensembl transcript: ENST00000453269
  gene symbol: TAF6
  hgvsc: ENST00000453269.2:c.25_33delCTTAGCAAC
  hgvsp: ENSP00000389575.2:p.Leu9_Asn11del
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000428071
  ensembl transcript: ENST00000520135
  gene symbol: TAF6
  hgvsc: ENST00000520135.1:c.25_33delCTTAGCAAC
  hgvsp: ENSP00000428071.1:p.Leu9_Asn11del
  variant of: http://identifiers.org/hgnc/11540
canonical: true
consequence: inframe deletion
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu46_Asn48del
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: African
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: TGTTGCTAAG
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD

7-99711813-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99711813
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99711813
    reference: chr 7
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000419555
  ensembl transcript: ENST00000493322
  gene symbol: TAF6
  hgvsc: ENST00000493322.1:c.20T>C
  hgvsp: ENSP00000419555.1:p.Leu7Pro
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000419760
  ensembl transcript: ENST00000472509
  gene symbol: TAF6
  hgvsc: ENST00000472509.1:c.191T>C
  hgvsp: ENSP00000419760.1:p.Leu64Pro
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000427710
  ensembl transcript: ENST00000460673
  gene symbol: TAF6
  hgvsc: ENST00000460673.2:c.20T>C
  hgvsp: ENSP00000427710.2:p.Leu7Pro
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000416396
  ensembl transcript: ENST00000452041
  gene symbol: TAF6
  hgvsc: ENST00000452041.1:c.20T>C
  hgvsp: ENSP00000416396.1:p.Leu7Pro
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000428071
  ensembl transcript: ENST00000520135
  gene symbol: TAF6
  hgvsc: ENST00000520135.1:c.20T>C
  hgvsp: ENSP00000428071.1:p.Leu7Pro
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000413614
  ensembl transcript: ENST00000421980
  gene symbol: TAF6
  hgvsc: ENST00000421980.1:c.20T>C
  hgvsp: ENSP00000413614.1:p.Leu7Pro
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000390220
  ensembl transcript: ENST00000417349
  gene symbol: TAF6
  hgvsc: ENST00000417349.1:c.20T>C
  hgvsp: ENSP00000390220.1:p.Leu7Pro
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000428639
  ensembl transcript: ENST00000523306
  gene symbol: TAF6
  hgvsc: ENST00000523306.1:c.20T>C
  hgvsp: ENSP00000428639.1:p.Leu7Pro
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000410012
  ensembl transcript: ENST00000440225
  gene symbol: TAF6
  hgvsc: ENST00000440225.1:c.20T>C
  hgvsp: ENSP00000410012.1:p.Leu7Pro
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000407980
  ensembl transcript: ENST00000418432
  gene symbol: TAF6
  hgvsc: ENST00000418432.2:c.-152T>C
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000395627
  ensembl transcript: ENST00000431404
  gene symbol: TAF6
  hgvsc: ENST00000431404.2:c.20T>C
  hgvsp: ENSP00000395627.2:p.Leu7Pro
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000389575
  ensembl transcript: ENST00000453269
  gene symbol: TAF6
  hgvsc: ENST00000453269.2:c.20T>C
  hgvsp: ENSP00000389575.2:p.Leu7Pro
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000399982
  ensembl transcript: ENST00000437822
  gene symbol: TAF6
  hgvsc: ENST00000437822.2:c.131T>C
  hgvsp: ENSP00000399982.2:p.Leu44Pro
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000344537
  ensembl transcript: ENST00000344095
  gene symbol: TAF6
  hgvsc: ENST00000344095.4:c.20T>C
  hgvsp: ENSP00000344537.4:p.Leu7Pro
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000412346
  ensembl transcript: ENST00000452438
  gene symbol: TAF6
  hgvsc: ENST00000452438.2:c.20T>C
  hgvsp: ENSP00000412346.2:p.Leu7Pro
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106290
  ensembl transcript: ENST00000487288
  gene symbol: TAF6
  hgvsc: ENST00000487288.1:n.176T>C
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000390073
  ensembl transcript: ENST00000449571
  gene symbol: TAF6
  hgvsc: ENST00000449571.1:c.20T>C
  hgvsp: ENSP00000390073.1:p.Leu7Pro
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000406315
  ensembl transcript: ENST00000451699
  gene symbol: TAF6
  hgvsc: ENST00000451699.1:c.20T>C
  hgvsp: ENSP00000406315.1:p.Leu7Pro
  variant of: http://identifiers.org/hgnc/11540
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu44Pro
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: Other
population: South Asian
reference allele: A
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum

7-99711814-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99711814
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99711814
    reference: chr 7
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000399982
  ensembl transcript: ENST00000437822
  gene symbol: TAF6
  hgvsc: ENST00000437822.2:c.130C>G
  hgvsp: ENSP00000399982.2:p.Leu44Val
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000395627
  ensembl transcript: ENST00000431404
  gene symbol: TAF6
  hgvsc: ENST00000431404.2:c.19C>G
  hgvsp: ENSP00000395627.2:p.Leu7Val
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000413614
  ensembl transcript: ENST00000421980
  gene symbol: TAF6
  hgvsc: ENST00000421980.1:c.19C>G
  hgvsp: ENSP00000413614.1:p.Leu7Val
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000428639
  ensembl transcript: ENST00000523306
  gene symbol: TAF6
  hgvsc: ENST00000523306.1:c.19C>G
  hgvsp: ENSP00000428639.1:p.Leu7Val
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000427710
  ensembl transcript: ENST00000460673
  gene symbol: TAF6
  hgvsc: ENST00000460673.2:c.19C>G
  hgvsp: ENSP00000427710.2:p.Leu7Val
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000407980
  ensembl transcript: ENST00000418432
  gene symbol: TAF6
  hgvsc: ENST00000418432.2:c.-153C>G
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000428071
  ensembl transcript: ENST00000520135
  gene symbol: TAF6
  hgvsc: ENST00000520135.1:c.19C>G
  hgvsp: ENSP00000428071.1:p.Leu7Val
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000389575
  ensembl transcript: ENST00000453269
  gene symbol: TAF6
  hgvsc: ENST00000453269.2:c.19C>G
  hgvsp: ENSP00000389575.2:p.Leu7Val
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000390220
  ensembl transcript: ENST00000417349
  gene symbol: TAF6
  hgvsc: ENST00000417349.1:c.19C>G
  hgvsp: ENSP00000390220.1:p.Leu7Val
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000412346
  ensembl transcript: ENST00000452438
  gene symbol: TAF6
  hgvsc: ENST00000452438.2:c.19C>G
  hgvsp: ENSP00000412346.2:p.Leu7Val
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000410012
  ensembl transcript: ENST00000440225
  gene symbol: TAF6
  hgvsc: ENST00000440225.1:c.19C>G
  hgvsp: ENSP00000410012.1:p.Leu7Val
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000419555
  ensembl transcript: ENST00000493322
  gene symbol: TAF6
  hgvsc: ENST00000493322.1:c.19C>G
  hgvsp: ENSP00000419555.1:p.Leu7Val
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000406315
  ensembl transcript: ENST00000451699
  gene symbol: TAF6
  hgvsc: ENST00000451699.1:c.19C>G
  hgvsp: ENSP00000406315.1:p.Leu7Val
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000390073
  ensembl transcript: ENST00000449571
  gene symbol: TAF6
  hgvsc: ENST00000449571.1:c.19C>G
  hgvsp: ENSP00000390073.1:p.Leu7Val
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000416396
  ensembl transcript: ENST00000452041
  gene symbol: TAF6
  hgvsc: ENST00000452041.1:c.19C>G
  hgvsp: ENSP00000416396.1:p.Leu7Val
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106290
  ensembl transcript: ENST00000487288
  gene symbol: TAF6
  hgvsc: ENST00000487288.1:n.175C>G
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000419760
  ensembl transcript: ENST00000472509
  gene symbol: TAF6
  hgvsc: ENST00000472509.1:c.190C>G
  hgvsp: ENSP00000419760.1:p.Leu64Val
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000344537
  ensembl transcript: ENST00000344095
  gene symbol: TAF6
  hgvsc: ENST00000344095.4:c.19C>G
  hgvsp: ENSP00000344537.4:p.Leu7Val
  variant of: http://identifiers.org/hgnc/11540
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu44Val
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: Other
reference allele: G
site quality: MQ
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD

7-99711814-GCTT-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99711814
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99711811
    reference: chr 7
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000399982
  ensembl transcript: ENST00000437822
  gene symbol: TAF6
  hgvsc: ENST00000437822.2:c.127_129delAAG
  hgvsp: ENSP00000399982.2:p.Lys43del
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000390220
  ensembl transcript: ENST00000417349
  gene symbol: TAF6
  hgvsc: ENST00000417349.1:c.16_18delAAG
  hgvsp: ENSP00000390220.1:p.Lys6del
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000428639
  ensembl transcript: ENST00000523306
  gene symbol: TAF6
  hgvsc: ENST00000523306.1:c.16_18delAAG
  hgvsp: ENSP00000428639.1:p.Lys6del
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000427710
  ensembl transcript: ENST00000460673
  gene symbol: TAF6
  hgvsc: ENST00000460673.2:c.16_18delAAG
  hgvsp: ENSP00000427710.2:p.Lys6del
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000390073
  ensembl transcript: ENST00000449571
  gene symbol: TAF6
  hgvsc: ENST00000449571.1:c.16_18delAAG
  hgvsp: ENSP00000390073.1:p.Lys6del
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000406315
  ensembl transcript: ENST00000451699
  gene symbol: TAF6
  hgvsc: ENST00000451699.1:c.16_18delAAG
  hgvsp: ENSP00000406315.1:p.Lys6del
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000344537
  ensembl transcript: ENST00000344095
  gene symbol: TAF6
  hgvsc: ENST00000344095.4:c.16_18delAAG
  hgvsp: ENSP00000344537.4:p.Lys6del
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000412346
  ensembl transcript: ENST00000452438
  gene symbol: TAF6
  hgvsc: ENST00000452438.2:c.16_18delAAG
  hgvsp: ENSP00000412346.2:p.Lys6del
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000428071
  ensembl transcript: ENST00000520135
  gene symbol: TAF6
  hgvsc: ENST00000520135.1:c.16_18delAAG
  hgvsp: ENSP00000428071.1:p.Lys6del
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000395627
  ensembl transcript: ENST00000431404
  gene symbol: TAF6
  hgvsc: ENST00000431404.2:c.16_18delAAG
  hgvsp: ENSP00000395627.2:p.Lys6del
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106290
  ensembl transcript: ENST00000487288
  gene symbol: TAF6
  hgvsc: ENST00000487288.1:n.172_174delAAG
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000419760
  ensembl transcript: ENST00000472509
  gene symbol: TAF6
  hgvsc: ENST00000472509.1:c.187_189delAAG
  hgvsp: ENSP00000419760.1:p.Lys63del
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000419555
  ensembl transcript: ENST00000493322
  gene symbol: TAF6
  hgvsc: ENST00000493322.1:c.16_18delAAG
  hgvsp: ENSP00000419555.1:p.Lys6del
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000410012
  ensembl transcript: ENST00000440225
  gene symbol: TAF6
  hgvsc: ENST00000440225.1:c.16_18delAAG
  hgvsp: ENSP00000410012.1:p.Lys6del
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000416396
  ensembl transcript: ENST00000452041
  gene symbol: TAF6
  hgvsc: ENST00000452041.1:c.16_18delAAG
  hgvsp: ENSP00000416396.1:p.Lys6del
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000407980
  ensembl transcript: ENST00000418432
  gene symbol: TAF6
  hgvsc: ENST00000418432.2:c.-156_-154delAAG
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000389575
  ensembl transcript: ENST00000453269
  gene symbol: TAF6
  hgvsc: ENST00000453269.2:c.16_18delAAG
  hgvsp: ENSP00000389575.2:p.Lys6del
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000413614
  ensembl transcript: ENST00000421980
  gene symbol: TAF6
  hgvsc: ENST00000421980.1:c.16_18delAAG
  hgvsp: ENSP00000413614.1:p.Lys6del
  variant of: http://identifiers.org/hgnc/11540
canonical: true
consequence: inframe deletion
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Lys43del
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: Other
population: South Asian
population: Latino
population: European (Non-Finnish)
reference allele: GCTT
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP

7-99711821-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99711821
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99711821
    reference: chr 7
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000413614
  ensembl transcript: ENST00000421980
  gene symbol: TAF6
  hgvsc: ENST00000421980.1:c.12G>A
  hgvsp: ENST00000421980.1:c.12G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000419555
  ensembl transcript: ENST00000493322
  gene symbol: TAF6
  hgvsc: ENST00000493322.1:c.12G>A
  hgvsp: ENST00000493322.1:c.12G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000344537
  ensembl transcript: ENST00000344095
  gene symbol: TAF6
  hgvsc: ENST00000344095.4:c.12G>A
  hgvsp: ENST00000344095.4:c.12G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000390220
  ensembl transcript: ENST00000417349
  gene symbol: TAF6
  hgvsc: ENST00000417349.1:c.12G>A
  hgvsp: ENST00000417349.1:c.12G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000427710
  ensembl transcript: ENST00000460673
  gene symbol: TAF6
  hgvsc: ENST00000460673.2:c.12G>A
  hgvsp: ENST00000460673.2:c.12G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000419760
  ensembl transcript: ENST00000472509
  gene symbol: TAF6
  hgvsc: ENST00000472509.1:c.183G>A
  hgvsp: ENST00000472509.1:c.183G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000390073
  ensembl transcript: ENST00000449571
  gene symbol: TAF6
  hgvsc: ENST00000449571.1:c.12G>A
  hgvsp: ENST00000449571.1:c.12G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000412346
  ensembl transcript: ENST00000452438
  gene symbol: TAF6
  hgvsc: ENST00000452438.2:c.12G>A
  hgvsp: ENST00000452438.2:c.12G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000399982
  ensembl transcript: ENST00000437822
  gene symbol: TAF6
  hgvsc: ENST00000437822.2:c.123G>A
  hgvsp: ENST00000437822.2:c.123G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000406315
  ensembl transcript: ENST00000451699
  gene symbol: TAF6
  hgvsc: ENST00000451699.1:c.12G>A
  hgvsp: ENST00000451699.1:c.12G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000416396
  ensembl transcript: ENST00000452041
  gene symbol: TAF6
  hgvsc: ENST00000452041.1:c.12G>A
  hgvsp: ENST00000452041.1:c.12G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000428639
  ensembl transcript: ENST00000523306
  gene symbol: TAF6
  hgvsc: ENST00000523306.1:c.12G>A
  hgvsp: ENST00000523306.1:c.12G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000407980
  ensembl transcript: ENST00000418432
  gene symbol: TAF6
  hgvsc: ENST00000418432.2:c.-160G>A
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000395627
  ensembl transcript: ENST00000431404
  gene symbol: TAF6
  hgvsc: ENST00000431404.2:c.12G>A
  hgvsp: ENST00000431404.2:c.12G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000389575
  ensembl transcript: ENST00000453269
  gene symbol: TAF6
  hgvsc: ENST00000453269.2:c.12G>A
  hgvsp: ENST00000453269.2:c.12G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106290
  ensembl transcript: ENST00000487288
  gene symbol: TAF6
  hgvsc: ENST00000487288.1:n.168G>A
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000428071
  ensembl transcript: ENST00000520135
  gene symbol: TAF6
  hgvsc: ENST00000520135.1:c.12G>A
  hgvsp: ENST00000520135.1:c.12G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000410012
  ensembl transcript: ENST00000440225
  gene symbol: TAF6
  hgvsc: ENST00000440225.1:c.12G>A
  hgvsp: ENST00000440225.1:c.12G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11540
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Glu41Glu
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: C
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP

7-99711839-GTCCC-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99711839
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99711835
    reference: chr 7
allele count: 123
allele frequency: 1.013146189581892e-3
allele num: 121404
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000407980
  ensembl transcript: ENST00000418432
  gene symbol: TAF6
  hgvsc: ENST00000418432.2:c.-182_-179delGGGA
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000344537
  ensembl transcript: ENST00000344095
  gene symbol: TAF6
  hgvsc: ENST00000344095.4:c.-11_-8delGGGA
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000395627
  ensembl transcript: ENST00000431404
  gene symbol: TAF6
  hgvsc: ENST00000431404.2:c.-11_-8delGGGA
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000416396
  ensembl transcript: ENST00000452041
  gene symbol: TAF6
  hgvsc: ENST00000452041.1:c.-11_-8delGGGA
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000390073
  ensembl transcript: ENST00000449571
  gene symbol: TAF6
  hgvsc: ENST00000449571.1:c.-11_-8delGGGA
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000410012
  ensembl transcript: ENST00000440225
  gene symbol: TAF6
  hgvsc: ENST00000440225.1:c.-11_-8delGGGA
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000406315
  ensembl transcript: ENST00000451699
  gene symbol: TAF6
  hgvsc: ENST00000451699.1:c.-11_-8delGGGA
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106290
  ensembl transcript: ENST00000487288
  gene symbol: TAF6
  hgvsc: ENST00000487288.1:n.146_149delGGGA
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000419760
  ensembl transcript: ENST00000472509
  gene symbol: TAF6
  hgvsc: ENST00000472509.1:c.161_164delGGGA
  hgvsp: ENSP00000419760.1:p.Arg54ThrfsTer10
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000390220
  ensembl transcript: ENST00000417349
  gene symbol: TAF6
  hgvsc: ENST00000417349.1:c.-11_-8delGGGA
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000428639
  ensembl transcript: ENST00000523306
  gene symbol: TAF6
  hgvsc: ENST00000523306.1:c.-11_-8delGGGA
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000428071
  ensembl transcript: ENST00000520135
  gene symbol: TAF6
  hgvsc: ENST00000520135.1:c.-11_-8delGGGA
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000419555
  ensembl transcript: ENST00000493322
  gene symbol: TAF6
  hgvsc: ENST00000493322.1:c.-11_-8delGGGA
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000389575
  ensembl transcript: ENST00000453269
  gene symbol: TAF6
  hgvsc: ENST00000453269.2:c.-11_-8delGGGA
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000399982
  ensembl transcript: ENST00000437822
  gene symbol: TAF6
  hgvsc: ENST00000437822.2:c.101_104delGGGA
  hgvsp: ENSP00000399982.2:p.Arg34ThrfsTer10
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000412346
  ensembl transcript: ENST00000452438
  gene symbol: TAF6
  hgvsc: ENST00000452438.2:c.-11_-8delGGGA
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000413614
  ensembl transcript: ENST00000421980
  gene symbol: TAF6
  hgvsc: ENST00000421980.1:c.-11_-8delGGGA
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000427710
  ensembl transcript: ENST00000460673
  gene symbol: TAF6
  hgvsc: ENST00000460673.2:c.-11_-8delGGGA
  variant of: http://identifiers.org/hgnc/11540
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2702
  bin: 3.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 6.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg34ThrfsTer10
num of homozygotes: 2
population: African
population: East Asian
population: European (Finnish)
population: Other
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: GTCCC
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD

7-99711840-TC-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99711840
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99711839
    reference: chr 7
allele count: 1
allele frequency: 8.253685270473266e-6
allele num: 121158
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000413614
  ensembl transcript: ENST00000421980
  gene symbol: TAF6
  hgvsc: ENST00000421980.1:c.-9delG
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000389575
  ensembl transcript: ENST00000453269
  gene symbol: TAF6
  hgvsc: ENST00000453269.2:c.-9delG
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000399982
  ensembl transcript: ENST00000437822
  gene symbol: TAF6
  hgvsc: ENST00000437822.2:c.103delG
  hgvsp: ENSP00000399982.2:p.Asp35ThrfsTer10
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000407980
  ensembl transcript: ENST00000418432
  gene symbol: TAF6
  hgvsc: ENST00000418432.2:c.-180delG
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000419760
  ensembl transcript: ENST00000472509
  gene symbol: TAF6
  hgvsc: ENST00000472509.1:c.163delG
  hgvsp: ENSP00000419760.1:p.Asp55ThrfsTer10
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000428639
  ensembl transcript: ENST00000523306
  gene symbol: TAF6
  hgvsc: ENST00000523306.1:c.-9delG
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000416396
  ensembl transcript: ENST00000452041
  gene symbol: TAF6
  hgvsc: ENST00000452041.1:c.-9delG
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000390073
  ensembl transcript: ENST00000449571
  gene symbol: TAF6
  hgvsc: ENST00000449571.1:c.-9delG
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000419555
  ensembl transcript: ENST00000493322
  gene symbol: TAF6
  hgvsc: ENST00000493322.1:c.-9delG
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000428071
  ensembl transcript: ENST00000520135
  gene symbol: TAF6
  hgvsc: ENST00000520135.1:c.-9delG
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106290
  ensembl transcript: ENST00000487288
  gene symbol: TAF6
  hgvsc: ENST00000487288.1:n.148delG
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000406315
  ensembl transcript: ENST00000451699
  gene symbol: TAF6
  hgvsc: ENST00000451699.1:c.-9delG
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000410012
  ensembl transcript: ENST00000440225
  gene symbol: TAF6
  hgvsc: ENST00000440225.1:c.-9delG
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000344537
  ensembl transcript: ENST00000344095
  gene symbol: TAF6
  hgvsc: ENST00000344095.4:c.-9delG
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000395627
  ensembl transcript: ENST00000431404
  gene symbol: TAF6
  hgvsc: ENST00000431404.2:c.-9delG
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000427710
  ensembl transcript: ENST00000460673
  gene symbol: TAF6
  hgvsc: ENST00000460673.2:c.-9delG
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000390220
  ensembl transcript: ENST00000417349
  gene symbol: TAF6
  hgvsc: ENST00000417349.1:c.-9delG
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000412346
  ensembl transcript: ENST00000452438
  gene symbol: TAF6
  hgvsc: ENST00000452438.2:c.-9delG
  variant of: http://identifiers.org/hgnc/11540
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 8930
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31322
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asp35ThrfsTer10
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: African
population: East Asian
reference allele: TC
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD

7-99711856-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99711856
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99711856
    reference: chr 7
allele count: 2
allele frequency: 1.647853670594051e-5
allele num: 121370
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000390220
  ensembl transcript: ENST00000417349
  gene symbol: TAF6
  hgvsc: ENST00000417349.1:c.-24A>G
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000419555
  ensembl transcript: ENST00000493322
  gene symbol: TAF6
  hgvsc: ENST00000493322.1:c.-22-2A>G
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000406315
  ensembl transcript: ENST00000451699
  gene symbol: TAF6
  hgvsc: ENST00000451699.1:c.-24A>G
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000413614
  ensembl transcript: ENST00000421980
  gene symbol: TAF6
  hgvsc: ENST00000421980.1:c.-24A>G
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000428071
  ensembl transcript: ENST00000520135
  gene symbol: TAF6
  hgvsc: ENST00000520135.1:c.-24A>G
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000428639
  ensembl transcript: ENST00000523306
  gene symbol: TAF6
  hgvsc: ENST00000523306.1:c.-24A>G
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000410012
  ensembl transcript: ENST00000440225
  gene symbol: TAF6
  hgvsc: ENST00000440225.1:c.-24A>G
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000427710
  ensembl transcript: ENST00000460673
  gene symbol: TAF6
  hgvsc: ENST00000460673.2:c.-24A>G
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000419760
  ensembl transcript: ENST00000472509
  gene symbol: TAF6
  hgvsc: ENST00000472509.1:c.148A>G
  hgvsp: ENSP00000419760.1:p.Arg50Gly
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000407980
  ensembl transcript: ENST00000418432
  gene symbol: TAF6
  hgvsc: ENST00000418432.2:c.-195A>G
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000344537
  ensembl transcript: ENST00000344095
  gene symbol: TAF6
  hgvsc: ENST00000344095.4:c.-24A>G
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000395627
  ensembl transcript: ENST00000431404
  gene symbol: TAF6
  hgvsc: ENST00000431404.2:c.-24A>G
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000399982
  ensembl transcript: ENST00000437822
  gene symbol: TAF6
  hgvsc: ENST00000437822.2:c.88A>G
  hgvsp: ENSP00000399982.2:p.Arg30Gly
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000390073
  ensembl transcript: ENST00000449571
  gene symbol: TAF6
  hgvsc: ENST00000449571.1:c.-24A>G
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106290
  ensembl transcript: ENST00000497233
  gene symbol: TAF6
  hgvsc: ENST00000497233.1:n.453A>G
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000416396
  ensembl transcript: ENST00000452041
  gene symbol: TAF6
  hgvsc: ENST00000452041.1:c.-24A>G
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000389575
  ensembl transcript: ENST00000453269
  gene symbol: TAF6
  hgvsc: ENST00000453269.2:c.-24A>G
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106290
  ensembl transcript: ENST00000487288
  gene symbol: TAF6
  hgvsc: ENST00000487288.1:n.133A>G
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000412346
  ensembl transcript: ENST00000452438
  gene symbol: TAF6
  hgvsc: ENST00000452438.2:c.-24A>G
  variant of: http://identifiers.org/hgnc/11540
canonical: false
consequence: splice acceptor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 31353
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.-22-2A>G
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Other
population: African
population: Latino
reference allele: T
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD

7-99711857-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99711857
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99711857
    reference: chr 7
allele count: 1
allele frequency: 8.239675686364985e-6
allele num: 121364
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000395627
  ensembl transcript: ENST00000431404
  gene symbol: TAF6
  hgvsc: ENST00000431404.2:c.-25C>G
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000419760
  ensembl transcript: ENST00000472509
  gene symbol: TAF6
  hgvsc: ENST00000472509.1:c.147C>G
  hgvsp: ENST00000472509.1:c.147C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000428639
  ensembl transcript: ENST00000523306
  gene symbol: TAF6
  hgvsc: ENST00000523306.1:c.-25C>G
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000413614
  ensembl transcript: ENST00000421980
  gene symbol: TAF6
  hgvsc: ENST00000421980.1:c.-25C>G
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000406315
  ensembl transcript: ENST00000451699
  gene symbol: TAF6
  hgvsc: ENST00000451699.1:c.-25C>G
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000390073
  ensembl transcript: ENST00000449571
  gene symbol: TAF6
  hgvsc: ENST00000449571.1:c.-25C>G
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000389575
  ensembl transcript: ENST00000453269
  gene symbol: TAF6
  hgvsc: ENST00000453269.2:c.-25C>G
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000344537
  ensembl transcript: ENST00000344095
  gene symbol: TAF6
  hgvsc: ENST00000344095.4:c.-25C>G
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000419555
  ensembl transcript: ENST00000493322
  gene symbol: TAF6
  hgvsc: ENST00000493322.1:c.-22-3C>G
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000407980
  ensembl transcript: ENST00000418432
  gene symbol: TAF6
  hgvsc: ENST00000418432.2:c.-196C>G
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000416396
  ensembl transcript: ENST00000452041
  gene symbol: TAF6
  hgvsc: ENST00000452041.1:c.-25C>G
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000428071
  ensembl transcript: ENST00000520135
  gene symbol: TAF6
  hgvsc: ENST00000520135.1:c.-25C>G
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000410012
  ensembl transcript: ENST00000440225
  gene symbol: TAF6
  hgvsc: ENST00000440225.1:c.-25C>G
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000427710
  ensembl transcript: ENST00000460673
  gene symbol: TAF6
  hgvsc: ENST00000460673.2:c.-25C>G
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000399982
  ensembl transcript: ENST00000437822
  gene symbol: TAF6
  hgvsc: ENST00000437822.2:c.87C>G
  hgvsp: ENST00000437822.2:c.87C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106290
  ensembl transcript: ENST00000497233
  gene symbol: TAF6
  hgvsc: ENST00000497233.1:n.452C>G
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000390220
  ensembl transcript: ENST00000417349
  gene symbol: TAF6
  hgvsc: ENST00000417349.1:c.-25C>G
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000412346
  ensembl transcript: ENST00000452438
  gene symbol: TAF6
  hgvsc: ENST00000452438.2:c.-25C>G
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106290
  ensembl transcript: ENST00000487288
  gene symbol: TAF6
  hgvsc: ENST00000487288.1:n.132C>G
  variant of: http://identifiers.org/hgnc/11540
canonical: false
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8940
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.-22-3C>G
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum

7-99711863-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99711863
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99711863
    reference: chr 7
allele count: 46
allele frequency: 3.793501566881082e-4
allele num: 121260
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000390073
  ensembl transcript: ENST00000449571
  gene symbol: TAF6
  hgvsc: ENST00000449571.1:c.-31T>C
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000395627
  ensembl transcript: ENST00000431404
  gene symbol: TAF6
  hgvsc: ENST00000431404.2:c.-31T>C
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000344537
  ensembl transcript: ENST00000344095
  gene symbol: TAF6
  hgvsc: ENST00000344095.4:c.-31T>C
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000419760
  ensembl transcript: ENST00000472509
  gene symbol: TAF6
  hgvsc: ENST00000472509.1:c.141T>C
  hgvsp: ENST00000472509.1:c.141T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000390220
  ensembl transcript: ENST00000417349
  gene symbol: TAF6
  hgvsc: ENST00000417349.1:c.-31T>C
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000428639
  ensembl transcript: ENST00000523306
  gene symbol: TAF6
  hgvsc: ENST00000523306.1:c.-31T>C
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000419555
  ensembl transcript: ENST00000493322
  gene symbol: TAF6
  hgvsc: ENST00000493322.1:c.-22-9T>C
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000412346
  ensembl transcript: ENST00000452438
  gene symbol: TAF6
  hgvsc: ENST00000452438.2:c.-31T>C
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000399982
  ensembl transcript: ENST00000437822
  gene symbol: TAF6
  hgvsc: ENST00000437822.2:c.81T>C
  hgvsp: ENST00000437822.2:c.81T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000389575
  ensembl transcript: ENST00000453269
  gene symbol: TAF6
  hgvsc: ENST00000453269.2:c.-31T>C
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000410012
  ensembl transcript: ENST00000440225
  gene symbol: TAF6
  hgvsc: ENST00000440225.1:c.-31T>C
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000407980
  ensembl transcript: ENST00000418432
  gene symbol: TAF6
  hgvsc: ENST00000418432.2:c.-202T>C
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106290
  ensembl transcript: ENST00000487288
  gene symbol: TAF6
  hgvsc: ENST00000487288.1:n.126T>C
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000406315
  ensembl transcript: ENST00000451699
  gene symbol: TAF6
  hgvsc: ENST00000451699.1:c.-31T>C
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000428071
  ensembl transcript: ENST00000520135
  gene symbol: TAF6
  hgvsc: ENST00000520135.1:c.-31T>C
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106290
  ensembl transcript: ENST00000497233
  gene symbol: TAF6
  hgvsc: ENST00000497233.1:n.446T>C
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000416396
  ensembl transcript: ENST00000452041
  gene symbol: TAF6
  hgvsc: ENST00000452041.1:c.-31T>C
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000427710
  ensembl transcript: ENST00000460673
  gene symbol: TAF6
  hgvsc: ENST00000460673.2:c.-31T>C
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000413614
  ensembl transcript: ENST00000421980
  gene symbol: TAF6
  hgvsc: ENST00000421980.1:c.-31T>C
  variant of: http://identifiers.org/hgnc/11540
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8922
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31321
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.His27His
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: South Asian
population: Other
population: East Asian
population: African
population: European (Finnish)
reference allele: A
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum

7-99711864-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99711864
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99711864
    reference: chr 7
allele count: 3
allele frequency: 2.475942095967516e-5
allele num: 121166
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000416396
  ensembl transcript: ENST00000452041
  gene symbol: TAF6
  hgvsc: ENST00000452041.1:c.-32A>G
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000427710
  ensembl transcript: ENST00000460673
  gene symbol: TAF6
  hgvsc: ENST00000460673.2:c.-32A>G
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000428639
  ensembl transcript: ENST00000523306
  gene symbol: TAF6
  hgvsc: ENST00000523306.1:c.-32A>G
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000419760
  ensembl transcript: ENST00000472509
  gene symbol: TAF6
  hgvsc: ENST00000472509.1:c.140A>G
  hgvsp: ENSP00000419760.1:p.His47Arg
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106290
  ensembl transcript: ENST00000487288
  gene symbol: TAF6
  hgvsc: ENST00000487288.1:n.125A>G
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000412346
  ensembl transcript: ENST00000452438
  gene symbol: TAF6
  hgvsc: ENST00000452438.2:c.-32A>G
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000344537
  ensembl transcript: ENST00000344095
  gene symbol: TAF6
  hgvsc: ENST00000344095.4:c.-32A>G
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106290
  ensembl transcript: ENST00000497233
  gene symbol: TAF6
  hgvsc: ENST00000497233.1:n.445A>G
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000428071
  ensembl transcript: ENST00000520135
  gene symbol: TAF6
  hgvsc: ENST00000520135.1:c.-32A>G
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000399982
  ensembl transcript: ENST00000437822
  gene symbol: TAF6
  hgvsc: ENST00000437822.2:c.80A>G
  hgvsp: ENSP00000399982.2:p.His27Arg
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000390073
  ensembl transcript: ENST00000449571
  gene symbol: TAF6
  hgvsc: ENST00000449571.1:c.-32A>G
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000419555
  ensembl transcript: ENST00000493322
  gene symbol: TAF6
  hgvsc: ENST00000493322.1:c.-22-10A>G
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000406315
  ensembl transcript: ENST00000451699
  gene symbol: TAF6
  hgvsc: ENST00000451699.1:c.-32A>G
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000390220
  ensembl transcript: ENST00000417349
  gene symbol: TAF6
  hgvsc: ENST00000417349.1:c.-32A>G
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000413614
  ensembl transcript: ENST00000421980
  gene symbol: TAF6
  hgvsc: ENST00000421980.1:c.-32A>G
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000395627
  ensembl transcript: ENST00000431404
  gene symbol: TAF6
  hgvsc: ENST00000431404.2:c.-32A>G
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000389575
  ensembl transcript: ENST00000453269
  gene symbol: TAF6
  hgvsc: ENST00000453269.2:c.-32A>G
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000410012
  ensembl transcript: ENST00000440225
  gene symbol: TAF6
  hgvsc: ENST00000440225.1:c.-32A>G
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000407980
  ensembl transcript: ENST00000418432
  gene symbol: TAF6
  hgvsc: ENST00000418432.2:c.-203A>G
  variant of: http://identifiers.org/hgnc/11540
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31307
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2658
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.His27Arg
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
population: Latino
population: South Asian
population: European (Finnish)
reference allele: T
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum

7-99711865-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99711865
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99711865
    reference: chr 7
allele count: 3
allele frequency: 2.476473501733531e-5
allele num: 121140
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000419760
  ensembl transcript: ENST00000472509
  gene symbol: TAF6
  hgvsc: ENST00000472509.1:c.139C>T
  hgvsp: ENSP00000419760.1:p.His47Tyr
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000419555
  ensembl transcript: ENST00000493322
  gene symbol: TAF6
  hgvsc: ENST00000493322.1:c.-22-11C>T
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000390220
  ensembl transcript: ENST00000417349
  gene symbol: TAF6
  hgvsc: ENST00000417349.1:c.-33C>T
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000390073
  ensembl transcript: ENST00000449571
  gene symbol: TAF6
  hgvsc: ENST00000449571.1:c.-33C>T
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000344537
  ensembl transcript: ENST00000344095
  gene symbol: TAF6
  hgvsc: ENST00000344095.4:c.-33C>T
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106290
  ensembl transcript: ENST00000487288
  gene symbol: TAF6
  hgvsc: ENST00000487288.1:n.124C>T
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000412346
  ensembl transcript: ENST00000452438
  gene symbol: TAF6
  hgvsc: ENST00000452438.2:c.-33C>T
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000428639
  ensembl transcript: ENST00000523306
  gene symbol: TAF6
  hgvsc: ENST00000523306.1:c.-33C>T
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000413614
  ensembl transcript: ENST00000421980
  gene symbol: TAF6
  hgvsc: ENST00000421980.1:c.-33C>T
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000399982
  ensembl transcript: ENST00000437822
  gene symbol: TAF6
  hgvsc: ENST00000437822.2:c.79C>T
  hgvsp: ENSP00000399982.2:p.His27Tyr
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000410012
  ensembl transcript: ENST00000440225
  gene symbol: TAF6
  hgvsc: ENST00000440225.1:c.-33C>T
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000406315
  ensembl transcript: ENST00000451699
  gene symbol: TAF6
  hgvsc: ENST00000451699.1:c.-33C>T
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000407980
  ensembl transcript: ENST00000418432
  gene symbol: TAF6
  hgvsc: ENST00000418432.2:c.-204C>T
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000416396
  ensembl transcript: ENST00000452041
  gene symbol: TAF6
  hgvsc: ENST00000452041.1:c.-33C>T
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000428071
  ensembl transcript: ENST00000520135
  gene symbol: TAF6
  hgvsc: ENST00000520135.1:c.-33C>T
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000427710
  ensembl transcript: ENST00000460673
  gene symbol: TAF6
  hgvsc: ENST00000460673.2:c.-33C>T
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000389575
  ensembl transcript: ENST00000453269
  gene symbol: TAF6
  hgvsc: ENST00000453269.2:c.-33C>T
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000395627
  ensembl transcript: ENST00000431404
  gene symbol: TAF6
  hgvsc: ENST00000431404.2:c.-33C>T
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106290
  ensembl transcript: ENST00000497233
  gene symbol: TAF6
  hgvsc: ENST00000497233.1:n.444C>T
  variant of: http://identifiers.org/hgnc/11540
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 31305
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8921
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.His27Tyr
num of homozygotes: 0
population: Other
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: African
reference allele: G
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: DP

7-99711868-GC-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99711868
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99711867
    reference: chr 7
allele count: 886
allele frequency: 7.31288586615603e-3
allele num: 121156
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000419760
  ensembl transcript: ENST00000472509
  gene symbol: TAF6
  hgvsc: ENST00000472509.1:c.135delG
  hgvsp: ENSP00000419760.1:p.Leu46PhefsTer19
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000412346
  ensembl transcript: ENST00000452438
  gene symbol: TAF6
  hgvsc: ENST00000452438.2:c.-37delG
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000413614
  ensembl transcript: ENST00000421980
  gene symbol: TAF6
  hgvsc: ENST00000421980.1:c.-37delG
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106290
  ensembl transcript: ENST00000497233
  gene symbol: TAF6
  hgvsc: ENST00000497233.1:n.440delG
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106290
  ensembl transcript: ENST00000487288
  gene symbol: TAF6
  hgvsc: ENST00000487288.1:n.120delG
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000410012
  ensembl transcript: ENST00000440225
  gene symbol: TAF6
  hgvsc: ENST00000440225.1:c.-37delG
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000395627
  ensembl transcript: ENST00000431404
  gene symbol: TAF6
  hgvsc: ENST00000431404.2:c.-37delG
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000399982
  ensembl transcript: ENST00000437822
  gene symbol: TAF6
  hgvsc: ENST00000437822.2:c.75delG
  hgvsp: ENSP00000399982.2:p.Leu26PhefsTer19
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000416396
  ensembl transcript: ENST00000452041
  gene symbol: TAF6
  hgvsc: ENST00000452041.1:c.-37delG
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000428639
  ensembl transcript: ENST00000523306
  gene symbol: TAF6
  hgvsc: ENST00000523306.1:c.-37delG
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000406315
  ensembl transcript: ENST00000451699
  gene symbol: TAF6
  hgvsc: ENST00000451699.1:c.-37delG
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000419555
  ensembl transcript: ENST00000493322
  gene symbol: TAF6
  hgvsc: ENST00000493322.1:c.-22-15delG
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000344537
  ensembl transcript: ENST00000344095
  gene symbol: TAF6
  hgvsc: ENST00000344095.4:c.-37delG
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000407980
  ensembl transcript: ENST00000418432
  gene symbol: TAF6
  hgvsc: ENST00000418432.2:c.-208delG
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000390073
  ensembl transcript: ENST00000449571
  gene symbol: TAF6
  hgvsc: ENST00000449571.1:c.-37delG
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000389575
  ensembl transcript: ENST00000453269
  gene symbol: TAF6
  hgvsc: ENST00000453269.2:c.-37delG
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000427710
  ensembl transcript: ENST00000460673
  gene symbol: TAF6
  hgvsc: ENST00000460673.2:c.-37delG
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000390220
  ensembl transcript: ENST00000417349
  gene symbol: TAF6
  hgvsc: ENST00000417349.1:c.-37delG
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000428071
  ensembl transcript: ENST00000520135
  gene symbol: TAF6
  hgvsc: ENST00000520135.1:c.-37delG
  variant of: http://identifiers.org/hgnc/11540
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 4.75e1
  variant carriers: 95
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 5.25e1
  variant carriers: 103
genotype quality: GenotypeQuality
hgvs: p.Leu26PhefsTer19
num of homozygotes: 38
population: East Asian
population: Other
population: Latino
population: South Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: GC
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ

7-99711869-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99711869
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99711869
    reference: chr 7
allele count: 1
allele frequency: 8.371002846140968e-6
allele num: 119460
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000419760
  ensembl transcript: ENST00000472509
  gene symbol: TAF6
  hgvsc: ENST00000472509.1:c.135G>C
  hgvsp: ENST00000472509.1:c.135G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000413614
  ensembl transcript: ENST00000421980
  gene symbol: TAF6
  hgvsc: ENST00000421980.1:c.-37G>C
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000390220
  ensembl transcript: ENST00000417349
  gene symbol: TAF6
  hgvsc: ENST00000417349.1:c.-37G>C
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000399982
  ensembl transcript: ENST00000437822
  gene symbol: TAF6
  hgvsc: ENST00000437822.2:c.75G>C
  hgvsp: ENST00000437822.2:c.75G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000390073
  ensembl transcript: ENST00000449571
  gene symbol: TAF6
  hgvsc: ENST00000449571.1:c.-37G>C
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000406315
  ensembl transcript: ENST00000451699
  gene symbol: TAF6
  hgvsc: ENST00000451699.1:c.-37G>C
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106290
  ensembl transcript: ENST00000487288
  gene symbol: TAF6
  hgvsc: ENST00000487288.1:n.120G>C
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000428639
  ensembl transcript: ENST00000523306
  gene symbol: TAF6
  hgvsc: ENST00000523306.1:c.-37G>C
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000344537
  ensembl transcript: ENST00000344095
  gene symbol: TAF6
  hgvsc: ENST00000344095.4:c.-37G>C
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000416396
  ensembl transcript: ENST00000452041
  gene symbol: TAF6
  hgvsc: ENST00000452041.1:c.-37G>C
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000427710
  ensembl transcript: ENST00000460673
  gene symbol: TAF6
  hgvsc: ENST00000460673.2:c.-37G>C
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000395627
  ensembl transcript: ENST00000431404
  gene symbol: TAF6
  hgvsc: ENST00000431404.2:c.-37G>C
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000410012
  ensembl transcript: ENST00000440225
  gene symbol: TAF6
  hgvsc: ENST00000440225.1:c.-37G>C
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000428071
  ensembl transcript: ENST00000520135
  gene symbol: TAF6
  hgvsc: ENST00000520135.1:c.-37G>C
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000412346
  ensembl transcript: ENST00000452438
  gene symbol: TAF6
  hgvsc: ENST00000452438.2:c.-37G>C
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000389575
  ensembl transcript: ENST00000453269
  gene symbol: TAF6
  hgvsc: ENST00000453269.2:c.-37G>C
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000407980
  ensembl transcript: ENST00000418432
  gene symbol: TAF6
  hgvsc: ENST00000418432.2:c.-208G>C
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000419555
  ensembl transcript: ENST00000493322
  gene symbol: TAF6
  hgvsc: ENST00000493322.1:c.-22-15G>C
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106290
  ensembl transcript: ENST00000497233
  gene symbol: TAF6
  hgvsc: ENST00000497233.1:n.440G>C
  variant of: http://identifiers.org/hgnc/11540
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16214
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2562
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly25Gly
num of homozygotes: 0
population: Other
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
population: European (Finnish)
reference allele: C
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: DP

7-99711870-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99711870
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99711870
    reference: chr 7
allele count: 2
allele frequency: 1.674508950250339e-5
allele num: 119438
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000419555
  ensembl transcript: ENST00000493322
  gene symbol: TAF6
  hgvsc: ENST00000493322.1:c.-22-16G>A
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000416396
  ensembl transcript: ENST00000452041
  gene symbol: TAF6
  hgvsc: ENST00000452041.1:c.-38G>A
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106290
  ensembl transcript: ENST00000497233
  gene symbol: TAF6
  hgvsc: ENST00000497233.1:n.439G>A
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000406315
  ensembl transcript: ENST00000451699
  gene symbol: TAF6
  hgvsc: ENST00000451699.1:c.-38G>A
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000413614
  ensembl transcript: ENST00000421980
  gene symbol: TAF6
  hgvsc: ENST00000421980.1:c.-38G>A
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106290
  ensembl transcript: ENST00000487288
  gene symbol: TAF6
  hgvsc: ENST00000487288.1:n.119G>A
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000427710
  ensembl transcript: ENST00000460673
  gene symbol: TAF6
  hgvsc: ENST00000460673.2:c.-38G>A
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000410012
  ensembl transcript: ENST00000440225
  gene symbol: TAF6
  hgvsc: ENST00000440225.1:c.-38G>A
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000390073
  ensembl transcript: ENST00000449571
  gene symbol: TAF6
  hgvsc: ENST00000449571.1:c.-38G>A
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000428071
  ensembl transcript: ENST00000520135
  gene symbol: TAF6
  hgvsc: ENST00000520135.1:c.-38G>A
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000428639
  ensembl transcript: ENST00000523306
  gene symbol: TAF6
  hgvsc: ENST00000523306.1:c.-38G>A
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000389575
  ensembl transcript: ENST00000453269
  gene symbol: TAF6
  hgvsc: ENST00000453269.2:c.-38G>A
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000344537
  ensembl transcript: ENST00000344095
  gene symbol: TAF6
  hgvsc: ENST00000344095.4:c.-38G>A
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000419760
  ensembl transcript: ENST00000472509
  gene symbol: TAF6
  hgvsc: ENST00000472509.1:c.134G>A
  hgvsp: ENSP00000419760.1:p.Gly45Glu
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000390220
  ensembl transcript: ENST00000417349
  gene symbol: TAF6
  hgvsc: ENST00000417349.1:c.-38G>A
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000395627
  ensembl transcript: ENST00000431404
  gene symbol: TAF6
  hgvsc: ENST00000431404.2:c.-38G>A
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000399982
  ensembl transcript: ENST00000437822
  gene symbol: TAF6
  hgvsc: ENST00000437822.2:c.74G>A
  hgvsp: ENSP00000399982.2:p.Gly25Glu
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000407980
  ensembl transcript: ENST00000418432
  gene symbol: TAF6
  hgvsc: ENST00000418432.2:c.-209G>A
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000412346
  ensembl transcript: ENST00000452438
  gene symbol: TAF6
  hgvsc: ENST00000452438.2:c.-38G>A
  variant of: http://identifiers.org/hgnc/11540
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2587
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly25Glu
num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
population: East Asian
population: Latino
population: European (Finnish)
reference allele: C
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP

7-99711871-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99711871
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99711871
    reference: chr 7
allele count: 2
allele frequency: 1.651418568550385e-5
allele num: 121108
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000427710
  ensembl transcript: ENST00000460673
  gene symbol: TAF6
  hgvsc: ENST00000460673.2:c.-39G>C
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000406315
  ensembl transcript: ENST00000451699
  gene symbol: TAF6
  hgvsc: ENST00000451699.1:c.-39G>C
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000419760
  ensembl transcript: ENST00000472509
  gene symbol: TAF6
  hgvsc: ENST00000472509.1:c.133G>C
  hgvsp: ENSP00000419760.1:p.Gly45Arg
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000399982
  ensembl transcript: ENST00000437822
  gene symbol: TAF6
  hgvsc: ENST00000437822.2:c.73G>C
  hgvsp: ENSP00000399982.2:p.Gly25Arg
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000344537
  ensembl transcript: ENST00000344095
  gene symbol: TAF6
  hgvsc: ENST00000344095.4:c.-39G>C
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000395627
  ensembl transcript: ENST00000431404
  gene symbol: TAF6
  hgvsc: ENST00000431404.2:c.-39G>C
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000428639
  ensembl transcript: ENST00000523306
  gene symbol: TAF6
  hgvsc: ENST00000523306.1:c.-39G>C
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000389575
  ensembl transcript: ENST00000453269
  gene symbol: TAF6
  hgvsc: ENST00000453269.2:c.-39G>C
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000390220
  ensembl transcript: ENST00000417349
  gene symbol: TAF6
  hgvsc: ENST00000417349.1:c.-39G>C
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106290
  ensembl transcript: ENST00000497233
  gene symbol: TAF6
  hgvsc: ENST00000497233.1:n.438G>C
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000390073
  ensembl transcript: ENST00000449571
  gene symbol: TAF6
  hgvsc: ENST00000449571.1:c.-39G>C
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000416396
  ensembl transcript: ENST00000452041
  gene symbol: TAF6
  hgvsc: ENST00000452041.1:c.-39G>C
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000407980
  ensembl transcript: ENST00000418432
  gene symbol: TAF6
  hgvsc: ENST00000418432.2:c.-210G>C
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000412346
  ensembl transcript: ENST00000452438
  gene symbol: TAF6
  hgvsc: ENST00000452438.2:c.-39G>C
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106290
  ensembl transcript: ENST00000487288
  gene symbol: TAF6
  hgvsc: ENST00000487288.1:n.118G>C
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000413614
  ensembl transcript: ENST00000421980
  gene symbol: TAF6
  hgvsc: ENST00000421980.1:c.-39G>C
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000428071
  ensembl transcript: ENST00000520135
  gene symbol: TAF6
  hgvsc: ENST00000520135.1:c.-39G>C
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000419555
  ensembl transcript: ENST00000493322
  gene symbol: TAF6
  hgvsc: ENST00000493322.1:c.-22-17G>C
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000410012
  ensembl transcript: ENST00000440225
  gene symbol: TAF6
  hgvsc: ENST00000440225.1:c.-39G>C
  variant of: http://identifiers.org/hgnc/11540
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Gly25Arg
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: South Asian
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: QD

7-99711873-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99711873
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99711873
    reference: chr 7
allele count: 20
allele frequency: 1.652537471287162e-4
allele num: 121026
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000427710
  ensembl transcript: ENST00000460673
  gene symbol: TAF6
  hgvsc: ENST00000460673.2:c.-41G>C
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000344537
  ensembl transcript: ENST00000344095
  gene symbol: TAF6
  hgvsc: ENST00000344095.4:c.-41G>C
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000390073
  ensembl transcript: ENST00000449571
  gene symbol: TAF6
  hgvsc: ENST00000449571.1:c.-41G>C
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000428071
  ensembl transcript: ENST00000520135
  gene symbol: TAF6
  hgvsc: ENST00000520135.1:c.-41G>C
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000416396
  ensembl transcript: ENST00000452041
  gene symbol: TAF6
  hgvsc: ENST00000452041.1:c.-41G>C
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000406315
  ensembl transcript: ENST00000451699
  gene symbol: TAF6
  hgvsc: ENST00000451699.1:c.-41G>C
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000407980
  ensembl transcript: ENST00000418432
  gene symbol: TAF6
  hgvsc: ENST00000418432.2:c.-212G>C
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000413614
  ensembl transcript: ENST00000421980
  gene symbol: TAF6
  hgvsc: ENST00000421980.1:c.-41G>C
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000389575
  ensembl transcript: ENST00000453269
  gene symbol: TAF6
  hgvsc: ENST00000453269.2:c.-41G>C
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000419760
  ensembl transcript: ENST00000472509
  gene symbol: TAF6
  hgvsc: ENST00000472509.1:c.131G>C
  hgvsp: ENSP00000419760.1:p.Arg44Pro
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106290
  ensembl transcript: ENST00000487288
  gene symbol: TAF6
  hgvsc: ENST00000487288.1:n.116G>C
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000410012
  ensembl transcript: ENST00000440225
  gene symbol: TAF6
  hgvsc: ENST00000440225.1:c.-41G>C
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000399982
  ensembl transcript: ENST00000437822
  gene symbol: TAF6
  hgvsc: ENST00000437822.2:c.71G>C
  hgvsp: ENSP00000399982.2:p.Arg24Pro
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000412346
  ensembl transcript: ENST00000452438
  gene symbol: TAF6
  hgvsc: ENST00000452438.2:c.-41G>C
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000428639
  ensembl transcript: ENST00000523306
  gene symbol: TAF6
  hgvsc: ENST00000523306.1:c.-41G>C
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106290
  ensembl transcript: ENST00000497233
  gene symbol: TAF6
  hgvsc: ENST00000497233.1:n.436G>C
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000419555
  ensembl transcript: ENST00000493322
  gene symbol: TAF6
  hgvsc: ENST00000493322.1:c.-22-19G>C
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000390220
  ensembl transcript: ENST00000417349
  gene symbol: TAF6
  hgvsc: ENST00000417349.1:c.-41G>C
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000395627
  ensembl transcript: ENST00000431404
  gene symbol: TAF6
  hgvsc: ENST00000431404.2:c.-41G>C
  variant of: http://identifiers.org/hgnc/11540
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2571
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Arg24Pro
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: South Asian
population: African
population: European (Finnish)
population: Latino
population: East Asian
reference allele: C
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP

7-99711873-CG-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99711873
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99711872
    reference: chr 7
allele count: 1
allele frequency: 8.262687356435807e-6
allele num: 121026
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000389575
  ensembl transcript: ENST00000453269
  gene symbol: TAF6
  hgvsc: ENST00000453269.2:c.-42delC
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000419555
  ensembl transcript: ENST00000493322
  gene symbol: TAF6
  hgvsc: ENST00000493322.1:c.-22-20delC
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000344537
  ensembl transcript: ENST00000344095
  gene symbol: TAF6
  hgvsc: ENST00000344095.4:c.-42delC
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000406315
  ensembl transcript: ENST00000451699
  gene symbol: TAF6
  hgvsc: ENST00000451699.1:c.-42delC
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000407980
  ensembl transcript: ENST00000418432
  gene symbol: TAF6
  hgvsc: ENST00000418432.2:c.-213delC
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000413614
  ensembl transcript: ENST00000421980
  gene symbol: TAF6
  hgvsc: ENST00000421980.1:c.-42delC
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106290
  ensembl transcript: ENST00000487288
  gene symbol: TAF6
  hgvsc: ENST00000487288.1:n.115delC
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000412346
  ensembl transcript: ENST00000452438
  gene symbol: TAF6
  hgvsc: ENST00000452438.2:c.-42delC
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000419760
  ensembl transcript: ENST00000472509
  gene symbol: TAF6
  hgvsc: ENST00000472509.1:c.130delC
  hgvsp: ENSP00000419760.1:p.Arg44GlyfsTer21
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106290
  ensembl transcript: ENST00000497233
  gene symbol: TAF6
  hgvsc: ENST00000497233.1:n.435delC
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000390220
  ensembl transcript: ENST00000417349
  gene symbol: TAF6
  hgvsc: ENST00000417349.1:c.-42delC
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000428639
  ensembl transcript: ENST00000523306
  gene symbol: TAF6
  hgvsc: ENST00000523306.1:c.-42delC
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000428071
  ensembl transcript: ENST00000520135
  gene symbol: TAF6
  hgvsc: ENST00000520135.1:c.-42delC
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000399982
  ensembl transcript: ENST00000437822
  gene symbol: TAF6
  hgvsc: ENST00000437822.2:c.70delC
  hgvsp: ENSP00000399982.2:p.Arg24GlyfsTer21
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000416396
  ensembl transcript: ENST00000452041
  gene symbol: TAF6
  hgvsc: ENST00000452041.1:c.-42delC
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000410012
  ensembl transcript: ENST00000440225
  gene symbol: TAF6
  hgvsc: ENST00000440225.1:c.-42delC
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000390073
  ensembl transcript: ENST00000449571
  gene symbol: TAF6
  hgvsc: ENST00000449571.1:c.-42delC
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000427710
  ensembl transcript: ENST00000460673
  gene symbol: TAF6
  hgvsc: ENST00000460673.2:c.-42delC
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000395627
  ensembl transcript: ENST00000431404
  gene symbol: TAF6
  hgvsc: ENST00000431404.2:c.-42delC
  variant of: http://identifiers.org/hgnc/11540
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31648
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg24GlyfsTer21
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
population: Other
reference allele: CG
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum

7-99711874-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99711874
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99711874
    reference: chr 7
allele count: 13
allele frequency: 1.074380165289256e-4
allele num: 121000
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000427710
  ensembl transcript: ENST00000460673
  gene symbol: TAF6
  hgvsc: ENST00000460673.2:c.-42C>T
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000428639
  ensembl transcript: ENST00000523306
  gene symbol: TAF6
  hgvsc: ENST00000523306.1:c.-42C>T
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000344537
  ensembl transcript: ENST00000344095
  gene symbol: TAF6
  hgvsc: ENST00000344095.4:c.-42C>T
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000399982
  ensembl transcript: ENST00000437822
  gene symbol: TAF6
  hgvsc: ENST00000437822.2:c.70C>T
  hgvsp: ENSP00000399982.2:p.Arg24Trp
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000412346
  ensembl transcript: ENST00000452438
  gene symbol: TAF6
  hgvsc: ENST00000452438.2:c.-42C>T
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000410012
  ensembl transcript: ENST00000440225
  gene symbol: TAF6
  hgvsc: ENST00000440225.1:c.-42C>T
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000416396
  ensembl transcript: ENST00000452041
  gene symbol: TAF6
  hgvsc: ENST00000452041.1:c.-42C>T
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000413614
  ensembl transcript: ENST00000421980
  gene symbol: TAF6
  hgvsc: ENST00000421980.1:c.-42C>T
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000390220
  ensembl transcript: ENST00000417349
  gene symbol: TAF6
  hgvsc: ENST00000417349.1:c.-42C>T
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000395627
  ensembl transcript: ENST00000431404
  gene symbol: TAF6
  hgvsc: ENST00000431404.2:c.-42C>T
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000419760
  ensembl transcript: ENST00000472509
  gene symbol: TAF6
  hgvsc: ENST00000472509.1:c.130C>T
  hgvsp: ENSP00000419760.1:p.Arg44Trp
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000428071
  ensembl transcript: ENST00000520135
  gene symbol: TAF6
  hgvsc: ENST00000520135.1:c.-42C>T
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000390073
  ensembl transcript: ENST00000449571
  gene symbol: TAF6
  hgvsc: ENST00000449571.1:c.-42C>T
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000407980
  ensembl transcript: ENST00000418432
  gene symbol: TAF6
  hgvsc: ENST00000418432.2:c.-213C>T
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000406315
  ensembl transcript: ENST00000451699
  gene symbol: TAF6
  hgvsc: ENST00000451699.1:c.-42C>T
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106290
  ensembl transcript: ENST00000497233
  gene symbol: TAF6
  hgvsc: ENST00000497233.1:n.435C>T
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000389575
  ensembl transcript: ENST00000453269
  gene symbol: TAF6
  hgvsc: ENST00000453269.2:c.-42C>T
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106290
  ensembl transcript: ENST00000487288
  gene symbol: TAF6
  hgvsc: ENST00000487288.1:n.115C>T
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000419555
  ensembl transcript: ENST00000493322
  gene symbol: TAF6
  hgvsc: ENST00000493322.1:c.-22-20C>T
  variant of: http://identifiers.org/hgnc/11540
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2558
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16328
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg24Trp
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: ClippingRankSum

7-99711876-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99711876
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99711876
    reference: chr 7
allele count: 1
allele frequency: 8.277597510098669e-6
allele num: 120808
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000416396
  ensembl transcript: ENST00000452041
  gene symbol: TAF6
  hgvsc: ENST00000452041.1:c.-44A>G
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000428639
  ensembl transcript: ENST00000523306
  gene symbol: TAF6
  hgvsc: ENST00000523306.1:c.-44A>G
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000344537
  ensembl transcript: ENST00000344095
  gene symbol: TAF6
  hgvsc: ENST00000344095.4:c.-44A>G
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000406315
  ensembl transcript: ENST00000451699
  gene symbol: TAF6
  hgvsc: ENST00000451699.1:c.-44A>G
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000395627
  ensembl transcript: ENST00000431404
  gene symbol: TAF6
  hgvsc: ENST00000431404.2:c.-44A>G
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106290
  ensembl transcript: ENST00000497233
  gene symbol: TAF6
  hgvsc: ENST00000497233.1:n.433A>G
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000427710
  ensembl transcript: ENST00000460673
  gene symbol: TAF6
  hgvsc: ENST00000460673.2:c.-44A>G
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000399982
  ensembl transcript: ENST00000437822
  gene symbol: TAF6
  hgvsc: ENST00000437822.2:c.68A>G
  hgvsp: ENSP00000399982.2:p.His23Arg
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000413614
  ensembl transcript: ENST00000421980
  gene symbol: TAF6
  hgvsc: ENST00000421980.1:c.-44A>G
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000390073
  ensembl transcript: ENST00000449571
  gene symbol: TAF6
  hgvsc: ENST00000449571.1:c.-44A>G
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000410012
  ensembl transcript: ENST00000440225
  gene symbol: TAF6
  hgvsc: ENST00000440225.1:c.-44A>G
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000419760
  ensembl transcript: ENST00000472509
  gene symbol: TAF6
  hgvsc: ENST00000472509.1:c.128A>G
  hgvsp: ENSP00000419760.1:p.His43Arg
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000407980
  ensembl transcript: ENST00000418432
  gene symbol: TAF6
  hgvsc: ENST00000418432.2:c.-215A>G
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000390220
  ensembl transcript: ENST00000417349
  gene symbol: TAF6
  hgvsc: ENST00000417349.1:c.-44A>G
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000389575
  ensembl transcript: ENST00000453269
  gene symbol: TAF6
  hgvsc: ENST00000453269.2:c.-44A>G
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000428071
  ensembl transcript: ENST00000520135
  gene symbol: TAF6
  hgvsc: ENST00000520135.1:c.-44A>G
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106290
  ensembl transcript: ENST00000487288
  gene symbol: TAF6
  hgvsc: ENST00000487288.1:n.113A>G
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000412346
  ensembl transcript: ENST00000452438
  gene symbol: TAF6
  hgvsc: ENST00000452438.2:c.-44A>G
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000419555
  ensembl transcript: ENST00000493322
  gene symbol: TAF6
  hgvsc: ENST00000493322.1:c.-22-22A>G
  variant of: http://identifiers.org/hgnc/11540
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.His23Arg
num of homozygotes: 0
population: South Asian
population: Latino
population: East Asian
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: T
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum

7-99711880-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99711880
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99711880
    reference: chr 7
allele count: 1
allele frequency: 8.305371914554334e-6
allele num: 120404
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000344537
  ensembl transcript: ENST00000344095
  gene symbol: TAF6
  hgvsc: ENST00000344095.4:c.-48C>T
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000407980
  ensembl transcript: ENST00000418432
  gene symbol: TAF6
  hgvsc: ENST00000418432.2:c.-219C>T
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000399982
  ensembl transcript: ENST00000437822
  gene symbol: TAF6
  hgvsc: ENST00000437822.2:c.64C>T
  hgvsp: ENSP00000399982.2:p.Leu22Phe
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000395627
  ensembl transcript: ENST00000431404
  gene symbol: TAF6
  hgvsc: ENST00000431404.2:c.-48C>T
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000406315
  ensembl transcript: ENST00000451699
  gene symbol: TAF6
  hgvsc: ENST00000451699.1:c.-48C>T
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000390220
  ensembl transcript: ENST00000417349
  gene symbol: TAF6
  hgvsc: ENST00000417349.1:c.-48C>T
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000427710
  ensembl transcript: ENST00000460673
  gene symbol: TAF6
  hgvsc: ENST00000460673.2:c.-48C>T
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106290
  ensembl transcript: ENST00000497233
  gene symbol: TAF6
  hgvsc: ENST00000497233.1:n.429C>T
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000416396
  ensembl transcript: ENST00000452041
  gene symbol: TAF6
  hgvsc: ENST00000452041.1:c.-48C>T
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000428639
  ensembl transcript: ENST00000523306
  gene symbol: TAF6
  hgvsc: ENST00000523306.1:c.-48C>T
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000413614
  ensembl transcript: ENST00000421980
  gene symbol: TAF6
  hgvsc: ENST00000421980.1:c.-48C>T
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000419760
  ensembl transcript: ENST00000472509
  gene symbol: TAF6
  hgvsc: ENST00000472509.1:c.124C>T
  hgvsp: ENSP00000419760.1:p.Leu42Phe
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000390073
  ensembl transcript: ENST00000449571
  gene symbol: TAF6
  hgvsc: ENST00000449571.1:c.-48C>T
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000412346
  ensembl transcript: ENST00000452438
  gene symbol: TAF6
  hgvsc: ENST00000452438.2:c.-48C>T
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000419555
  ensembl transcript: ENST00000493322
  gene symbol: TAF6
  hgvsc: ENST00000493322.1:c.-22-26C>T
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106290
  ensembl transcript: ENST00000487288
  gene symbol: TAF6
  hgvsc: ENST00000487288.1:n.109C>T
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000428071
  ensembl transcript: ENST00000520135
  gene symbol: TAF6
  hgvsc: ENST00000520135.1:c.-48C>T
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000410012
  ensembl transcript: ENST00000440225
  gene symbol: TAF6
  hgvsc: ENST00000440225.1:c.-48C>T
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000389575
  ensembl transcript: ENST00000453269
  gene symbol: TAF6
  hgvsc: ENST00000453269.2:c.-48C>T
  variant of: http://identifiers.org/hgnc/11540
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 31391
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu22Phe
num of homozygotes: 0
population: African
population: Other
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: G
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum

7-99711884-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99711884
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99711884
    reference: chr 7
allele count: 9
allele frequency: 7.501125168775316e-5
allele num: 119982
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000390220
  ensembl transcript: ENST00000417349
  gene symbol: TAF6
  hgvsc: ENST00000417349.1:c.-52G>A
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000428639
  ensembl transcript: ENST00000523306
  gene symbol: TAF6
  hgvsc: ENST00000523306.1:c.-52G>A
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000413614
  ensembl transcript: ENST00000421980
  gene symbol: TAF6
  hgvsc: ENST00000421980.1:c.-52G>A
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000395627
  ensembl transcript: ENST00000431404
  gene symbol: TAF6
  hgvsc: ENST00000431404.2:c.-52G>A
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000399982
  ensembl transcript: ENST00000437822
  gene symbol: TAF6
  hgvsc: ENST00000437822.2:c.60G>A
  hgvsp: ENST00000437822.2:c.60G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000390073
  ensembl transcript: ENST00000449571
  gene symbol: TAF6
  hgvsc: ENST00000449571.1:c.-52G>A
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000416396
  ensembl transcript: ENST00000452041
  gene symbol: TAF6
  hgvsc: ENST00000452041.1:c.-52G>A
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000427710
  ensembl transcript: ENST00000460673
  gene symbol: TAF6
  hgvsc: ENST00000460673.2:c.-52G>A
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000419760
  ensembl transcript: ENST00000472509
  gene symbol: TAF6
  hgvsc: ENST00000472509.1:c.120G>A
  hgvsp: ENST00000472509.1:c.120G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000412346
  ensembl transcript: ENST00000452438
  gene symbol: TAF6
  hgvsc: ENST00000452438.2:c.-52G>A
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000406315
  ensembl transcript: ENST00000451699
  gene symbol: TAF6
  hgvsc: ENST00000451699.1:c.-52G>A
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000428071
  ensembl transcript: ENST00000520135
  gene symbol: TAF6
  hgvsc: ENST00000520135.1:c.-52G>A
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000410012
  ensembl transcript: ENST00000440225
  gene symbol: TAF6
  hgvsc: ENST00000440225.1:c.-52G>A
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000407980
  ensembl transcript: ENST00000418432
  gene symbol: TAF6
  hgvsc: ENST00000418432.2:c.-223G>A
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000419555
  ensembl transcript: ENST00000493322
  gene symbol: TAF6
  hgvsc: ENST00000493322.1:c.-22-30G>A
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106290
  ensembl transcript: ENST00000487288
  gene symbol: TAF6
  hgvsc: ENST00000487288.1:n.105G>A
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106290
  ensembl transcript: ENST00000497233
  gene symbol: TAF6
  hgvsc: ENST00000497233.1:n.425G>A
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000344537
  ensembl transcript: ENST00000344095
  gene symbol: TAF6
  hgvsc: ENST00000344095.4:c.-52G>A
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000389575
  ensembl transcript: ENST00000453269
  gene symbol: TAF6
  hgvsc: ENST00000453269.2:c.-52G>A
  variant of: http://identifiers.org/hgnc/11540
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1045
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro20Pro
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Other
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
reference allele: C
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: QD

7-99711885-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99711885
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99711885
    reference: chr 7
allele count: 5
allele frequency: 4.177109440267335e-5
allele num: 119700
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000390220
  ensembl transcript: ENST00000417349
  gene symbol: TAF6
  hgvsc: ENST00000417349.1:c.-53C>T
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000428071
  ensembl transcript: ENST00000520135
  gene symbol: TAF6
  hgvsc: ENST00000520135.1:c.-53C>T
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000407980
  ensembl transcript: ENST00000418432
  gene symbol: TAF6
  hgvsc: ENST00000418432.2:c.-224C>T
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000389575
  ensembl transcript: ENST00000453269
  gene symbol: TAF6
  hgvsc: ENST00000453269.2:c.-53C>T
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000412346
  ensembl transcript: ENST00000452438
  gene symbol: TAF6
  hgvsc: ENST00000452438.2:c.-53C>T
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000413614
  ensembl transcript: ENST00000421980
  gene symbol: TAF6
  hgvsc: ENST00000421980.1:c.-53C>T
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000344537
  ensembl transcript: ENST00000344095
  gene symbol: TAF6
  hgvsc: ENST00000344095.4:c.-53C>T
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000428639
  ensembl transcript: ENST00000523306
  gene symbol: TAF6
  hgvsc: ENST00000523306.1:c.-53C>T
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000395627
  ensembl transcript: ENST00000431404
  gene symbol: TAF6
  hgvsc: ENST00000431404.2:c.-53C>T
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000419760
  ensembl transcript: ENST00000472509
  gene symbol: TAF6
  hgvsc: ENST00000472509.1:c.119C>T
  hgvsp: ENSP00000419760.1:p.Pro40Leu
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000406315
  ensembl transcript: ENST00000451699
  gene symbol: TAF6
  hgvsc: ENST00000451699.1:c.-53C>T
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000419555
  ensembl transcript: ENST00000493322
  gene symbol: TAF6
  hgvsc: ENST00000493322.1:c.-22-31C>T
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000427710
  ensembl transcript: ENST00000460673
  gene symbol: TAF6
  hgvsc: ENST00000460673.2:c.-53C>T
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000390073
  ensembl transcript: ENST00000449571
  gene symbol: TAF6
  hgvsc: ENST00000449571.1:c.-53C>T
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000399982
  ensembl transcript: ENST00000437822
  gene symbol: TAF6
  hgvsc: ENST00000437822.2:c.59C>T
  hgvsp: ENSP00000399982.2:p.Pro20Leu
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000410012
  ensembl transcript: ENST00000440225
  gene symbol: TAF6
  hgvsc: ENST00000440225.1:c.-53C>T
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106290
  ensembl transcript: ENST00000497233
  gene symbol: TAF6
  hgvsc: ENST00000497233.1:n.424C>T
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106290
  ensembl transcript: ENST00000487288
  gene symbol: TAF6
  hgvsc: ENST00000487288.1:n.104C>T
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000416396
  ensembl transcript: ENST00000452041
  gene symbol: TAF6
  hgvsc: ENST00000452041.1:c.-53C>T
  variant of: http://identifiers.org/hgnc/11540
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15530
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro20Leu
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum

7-99711888-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99711888
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99711888
    reference: chr 7
allele count: 2
allele frequency: 1.679627794480743e-5
allele num: 119074
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000427710
  ensembl transcript: ENST00000460673
  gene symbol: TAF6
  hgvsc: ENST00000460673.2:c.-56C>T
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000428071
  ensembl transcript: ENST00000520135
  gene symbol: TAF6
  hgvsc: ENST00000520135.1:c.-56C>T
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000413614
  ensembl transcript: ENST00000421980
  gene symbol: TAF6
  hgvsc: ENST00000421980.1:c.-56C>T
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000390073
  ensembl transcript: ENST00000449571
  gene symbol: TAF6
  hgvsc: ENST00000449571.1:c.-56C>T
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000428639
  ensembl transcript: ENST00000523306
  gene symbol: TAF6
  hgvsc: ENST00000523306.1:c.-56C>T
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000390220
  ensembl transcript: ENST00000417349
  gene symbol: TAF6
  hgvsc: ENST00000417349.1:c.-56C>T
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000399982
  ensembl transcript: ENST00000437822
  gene symbol: TAF6
  hgvsc: ENST00000437822.2:c.56C>T
  hgvsp: ENSP00000399982.2:p.Ser19Phe
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000412346
  ensembl transcript: ENST00000452438
  gene symbol: TAF6
  hgvsc: ENST00000452438.2:c.-56C>T
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000406315
  ensembl transcript: ENST00000451699
  gene symbol: TAF6
  hgvsc: ENST00000451699.1:c.-56C>T
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000344537
  ensembl transcript: ENST00000344095
  gene symbol: TAF6
  hgvsc: ENST00000344095.4:c.-56C>T
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000419555
  ensembl transcript: ENST00000493322
  gene symbol: TAF6
  hgvsc: ENST00000493322.1:c.-22-34C>T
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000407980
  ensembl transcript: ENST00000418432
  gene symbol: TAF6
  hgvsc: ENST00000418432.2:c.-227C>T
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106290
  ensembl transcript: ENST00000497233
  gene symbol: TAF6
  hgvsc: ENST00000497233.1:n.421C>T
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000419760
  ensembl transcript: ENST00000472509
  gene symbol: TAF6
  hgvsc: ENST00000472509.1:c.116C>T
  hgvsp: ENSP00000419760.1:p.Ser39Phe
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000389575
  ensembl transcript: ENST00000453269
  gene symbol: TAF6
  hgvsc: ENST00000453269.2:c.-56C>T
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106290
  ensembl transcript: ENST00000487288
  gene symbol: TAF6
  hgvsc: ENST00000487288.1:n.101C>T
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000395627
  ensembl transcript: ENST00000431404
  gene symbol: TAF6
  hgvsc: ENST00000431404.2:c.-56C>T
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000410012
  ensembl transcript: ENST00000440225
  gene symbol: TAF6
  hgvsc: ENST00000440225.1:c.-56C>T
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000416396
  ensembl transcript: ENST00000452041
  gene symbol: TAF6
  hgvsc: ENST00000452041.1:c.-56C>T
  variant of: http://identifiers.org/hgnc/11540
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1699
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser19Phe
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
population: African
population: South Asian
population: East Asian
reference allele: G
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: MQ

http://identifiers.org/exac.variant/7-99711904-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99711904
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99711904
    reference: chr 7
allele count: 2
allele frequency: 1.83614263155962e-5
allele num: 108924
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000390073
  ensembl transcript: ENST00000449571
  gene symbol: TAF6
  hgvsc: ENST00000449571.1:c.-59-13G>T
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000399982
  ensembl transcript: ENST00000437822
  gene symbol: TAF6
  hgvsc: ENST00000437822.2:c.53-13G>T
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000428639
  ensembl transcript: ENST00000523306
  gene symbol: TAF6
  hgvsc: ENST00000523306.1:c.-59-13G>T
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl transcript: ENST00000487288
  gene symbol: TAF6
  hgvsc: ENST00000487288.1:n.98-13G>T
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000416396
  ensembl transcript: ENST00000452041
  gene symbol: TAF6
  hgvsc: ENST00000452041.1:c.-59-13G>T
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000390220
  ensembl transcript: ENST00000417349
  gene symbol: TAF6
  hgvsc: ENST00000417349.1:c.-59-13G>T
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000410012
  ensembl transcript: ENST00000440225
  gene symbol: TAF6
  hgvsc: ENST00000440225.1:c.-59-13G>T
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000395627
  ensembl transcript: ENST00000431404
  gene symbol: TAF6
  hgvsc: ENST00000431404.2:c.-59-13G>T
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000406315
  ensembl transcript: ENST00000451699
  gene symbol: TAF6
  hgvsc: ENST00000451699.1:c.-59-13G>T
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000428071
  ensembl transcript: ENST00000520135
  gene symbol: TAF6
  hgvsc: ENST00000520135.1:c.-59-13G>T
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000413614
  ensembl transcript: ENST00000421980
  gene symbol: TAF6
  hgvsc: ENST00000421980.1:c.-59-13G>T
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000389575
  ensembl transcript: ENST00000453269
  gene symbol: TAF6
  hgvsc: ENST00000453269.2:c.-59-13G>T
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl transcript: ENST00000497233
  gene symbol: TAF6
  hgvsc: ENST00000497233.1:n.418-13G>T
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000407980
  ensembl transcript: ENST00000418432
  gene symbol: TAF6
  hgvsc: ENST00000418432.2:c.-230-13G>T
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000344537
  ensembl transcript: ENST00000344095
  gene symbol: TAF6
  hgvsc: ENST00000344095.4:c.-59-13G>T
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000419760
  ensembl transcript: ENST00000472509
  gene symbol: TAF6
  hgvsc: ENST00000472509.1:c.100G>T
  hgvsp: ENSP00000419760.1:p.Val34Phe
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000427710
  ensembl transcript: ENST00000460673
  gene symbol: TAF6
  hgvsc: ENST00000460673.2:c.-59-13G>T
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000419555
  ensembl transcript: ENST00000493322
  gene symbol: TAF6
  hgvsc: ENST00000493322.1:c.-22-50G>T
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000412346
  ensembl transcript: ENST00000452438
  gene symbol: TAF6
  hgvsc: ENST00000452438.2:c.-59-13G>T
  variant of: http://identifiers.org/hgnc/11540
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8520
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5879
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val34Phe
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
reference allele: C
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: MQRankSum

7-99711904-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99711904
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99711904
    reference: chr 7
allele count: 2
allele frequency: 1.83614263155962e-5
allele num: 108924
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000344537
  ensembl transcript: ENST00000344095
  gene symbol: TAF6
  hgvsc: ENST00000344095.4:c.-59-13G>A
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000395627
  ensembl transcript: ENST00000431404
  gene symbol: TAF6
  hgvsc: ENST00000431404.2:c.-59-13G>A
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000428071
  ensembl transcript: ENST00000520135
  gene symbol: TAF6
  hgvsc: ENST00000520135.1:c.-59-13G>A
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000419760
  ensembl transcript: ENST00000472509
  gene symbol: TAF6
  hgvsc: ENST00000472509.1:c.100G>A
  hgvsp: ENSP00000419760.1:p.Val34Ile
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl transcript: ENST00000487288
  gene symbol: TAF6
  hgvsc: ENST00000487288.1:n.98-13G>A
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000419555
  ensembl transcript: ENST00000493322
  gene symbol: TAF6
  hgvsc: ENST00000493322.1:c.-22-50G>A
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000428639
  ensembl transcript: ENST00000523306
  gene symbol: TAF6
  hgvsc: ENST00000523306.1:c.-59-13G>A
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000412346
  ensembl transcript: ENST00000452438
  gene symbol: TAF6
  hgvsc: ENST00000452438.2:c.-59-13G>A
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000416396
  ensembl transcript: ENST00000452041
  gene symbol: TAF6
  hgvsc: ENST00000452041.1:c.-59-13G>A
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000399982
  ensembl transcript: ENST00000437822
  gene symbol: TAF6
  hgvsc: ENST00000437822.2:c.53-13G>A
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000389575
  ensembl transcript: ENST00000453269
  gene symbol: TAF6
  hgvsc: ENST00000453269.2:c.-59-13G>A
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl transcript: ENST00000497233
  gene symbol: TAF6
  hgvsc: ENST00000497233.1:n.418-13G>A
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000406315
  ensembl transcript: ENST00000451699
  gene symbol: TAF6
  hgvsc: ENST00000451699.1:c.-59-13G>A
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000413614
  ensembl transcript: ENST00000421980
  gene symbol: TAF6
  hgvsc: ENST00000421980.1:c.-59-13G>A
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000427710
  ensembl transcript: ENST00000460673
  gene symbol: TAF6
  hgvsc: ENST00000460673.2:c.-59-13G>A
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000410012
  ensembl transcript: ENST00000440225
  gene symbol: TAF6
  hgvsc: ENST00000440225.1:c.-59-13G>A
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000390073
  ensembl transcript: ENST00000449571
  gene symbol: TAF6
  hgvsc: ENST00000449571.1:c.-59-13G>A
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000407980
  ensembl transcript: ENST00000418432
  gene symbol: TAF6
  hgvsc: ENST00000418432.2:c.-230-13G>A
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000390220
  ensembl transcript: ENST00000417349
  gene symbol: TAF6
  hgvsc: ENST00000417349.1:c.-59-13G>A
  variant of: http://identifiers.org/hgnc/11540
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7146
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val34Ile
num of homozygotes: 0
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Latino
reference allele: C
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD

7-99711905-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99711905
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99711905
    reference: chr 7
allele count: 2
allele frequency: 1.879451951810852e-5
allele num: 106414
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000399982
  ensembl transcript: ENST00000437822
  gene symbol: TAF6
  hgvsc: ENST00000437822.2:c.53-14C>T
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000413614
  ensembl transcript: ENST00000421980
  gene symbol: TAF6
  hgvsc: ENST00000421980.1:c.-59-14C>T
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000389575
  ensembl transcript: ENST00000453269
  gene symbol: TAF6
  hgvsc: ENST00000453269.2:c.-59-14C>T
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000419555
  ensembl transcript: ENST00000493322
  gene symbol: TAF6
  hgvsc: ENST00000493322.1:c.-22-51C>T
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000395627
  ensembl transcript: ENST00000431404
  gene symbol: TAF6
  hgvsc: ENST00000431404.2:c.-59-14C>T
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000428639
  ensembl transcript: ENST00000523306
  gene symbol: TAF6
  hgvsc: ENST00000523306.1:c.-59-14C>T
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000406315
  ensembl transcript: ENST00000451699
  gene symbol: TAF6
  hgvsc: ENST00000451699.1:c.-59-14C>T
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000419760
  ensembl transcript: ENST00000472509
  gene symbol: TAF6
  hgvsc: ENST00000472509.1:c.99C>T
  hgvsp: ENST00000472509.1:c.99C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000390073
  ensembl transcript: ENST00000449571
  gene symbol: TAF6
  hgvsc: ENST00000449571.1:c.-59-14C>T
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000427710
  ensembl transcript: ENST00000460673
  gene symbol: TAF6
  hgvsc: ENST00000460673.2:c.-59-14C>T
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000344537
  ensembl transcript: ENST00000344095
  gene symbol: TAF6
  hgvsc: ENST00000344095.4:c.-59-14C>T
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000412346
  ensembl transcript: ENST00000452438
  gene symbol: TAF6
  hgvsc: ENST00000452438.2:c.-59-14C>T
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000407980
  ensembl transcript: ENST00000418432
  gene symbol: TAF6
  hgvsc: ENST00000418432.2:c.-230-14C>T
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000416396
  ensembl transcript: ENST00000452041
  gene symbol: TAF6
  hgvsc: ENST00000452041.1:c.-59-14C>T
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl transcript: ENST00000497233
  gene symbol: TAF6
  hgvsc: ENST00000497233.1:n.418-14C>T
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000410012
  ensembl transcript: ENST00000440225
  gene symbol: TAF6
  hgvsc: ENST00000440225.1:c.-59-14C>T
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000390220
  ensembl transcript: ENST00000417349
  gene symbol: TAF6
  hgvsc: ENST00000417349.1:c.-59-14C>T
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl transcript: ENST00000487288
  gene symbol: TAF6
  hgvsc: ENST00000487288.1:n.98-14C>T
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000428071
  ensembl transcript: ENST00000520135
  gene symbol: TAF6
  hgvsc: ENST00000520135.1:c.-59-14C>T
  variant of: http://identifiers.org/hgnc/11540
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6964
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8299
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro33Pro
num of homozygotes: 0
population: Latino
population: African
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: G
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: DP

7-99711908-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99711908
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99711908
    reference: chr 7
allele count: 2
allele frequency: 1.940240589833139e-5
allele num: 103080
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000390073
  ensembl transcript: ENST00000449571
  gene symbol: TAF6
  hgvsc: ENST00000449571.1:c.-59-17C>T
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000399982
  ensembl transcript: ENST00000437822
  gene symbol: TAF6
  hgvsc: ENST00000437822.2:c.53-17C>T
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000427710
  ensembl transcript: ENST00000460673
  gene symbol: TAF6
  hgvsc: ENST00000460673.2:c.-59-17C>T
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl transcript: ENST00000487288
  gene symbol: TAF6
  hgvsc: ENST00000487288.1:n.98-17C>T
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000419760
  ensembl transcript: ENST00000472509
  gene symbol: TAF6
  hgvsc: ENST00000472509.1:c.96C>T
  hgvsp: ENST00000472509.1:c.96C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000416396
  ensembl transcript: ENST00000452041
  gene symbol: TAF6
  hgvsc: ENST00000452041.1:c.-59-17C>T
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000419555
  ensembl transcript: ENST00000493322
  gene symbol: TAF6
  hgvsc: ENST00000493322.1:c.-22-54C>T
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000389575
  ensembl transcript: ENST00000453269
  gene symbol: TAF6
  hgvsc: ENST00000453269.2:c.-59-17C>T
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000428639
  ensembl transcript: ENST00000523306
  gene symbol: TAF6
  hgvsc: ENST00000523306.1:c.-59-17C>T
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000406315
  ensembl transcript: ENST00000451699
  gene symbol: TAF6
  hgvsc: ENST00000451699.1:c.-59-17C>T
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000395627
  ensembl transcript: ENST00000431404
  gene symbol: TAF6
  hgvsc: ENST00000431404.2:c.-59-17C>T
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000390220
  ensembl transcript: ENST00000417349
  gene symbol: TAF6
  hgvsc: ENST00000417349.1:c.-59-17C>T
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000344537
  ensembl transcript: ENST00000344095
  gene symbol: TAF6
  hgvsc: ENST00000344095.4:c.-59-17C>T
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000412346
  ensembl transcript: ENST00000452438
  gene symbol: TAF6
  hgvsc: ENST00000452438.2:c.-59-17C>T
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000413614
  ensembl transcript: ENST00000421980
  gene symbol: TAF6
  hgvsc: ENST00000421980.1:c.-59-17C>T
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000407980
  ensembl transcript: ENST00000418432
  gene symbol: TAF6
  hgvsc: ENST00000418432.2:c.-230-17C>T
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000410012
  ensembl transcript: ENST00000440225
  gene symbol: TAF6
  hgvsc: ENST00000440225.1:c.-59-17C>T
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl transcript: ENST00000497233
  gene symbol: TAF6
  hgvsc: ENST00000497233.1:n.418-17C>T
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000428071
  ensembl transcript: ENST00000520135
  gene symbol: TAF6
  hgvsc: ENST00000520135.1:c.-59-17C>T
  variant of: http://identifiers.org/hgnc/11540
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8458
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Cys32Cys
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: European (Finnish)
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum

7-99711908-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99711908
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99711908
    reference: chr 7
allele count: 1
allele frequency: 9.701202949165697e-6
allele num: 103080
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000407980
  ensembl transcript: ENST00000418432
  gene symbol: TAF6
  hgvsc: ENST00000418432.2:c.-230-17C>G
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000344537
  ensembl transcript: ENST00000344095
  gene symbol: TAF6
  hgvsc: ENST00000344095.4:c.-59-17C>G
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000419760
  ensembl transcript: ENST00000472509
  gene symbol: TAF6
  hgvsc: ENST00000472509.1:c.96C>G
  hgvsp: ENSP00000419760.1:p.Cys32Trp
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000428639
  ensembl transcript: ENST00000523306
  gene symbol: TAF6
  hgvsc: ENST00000523306.1:c.-59-17C>G
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000395627
  ensembl transcript: ENST00000431404
  gene symbol: TAF6
  hgvsc: ENST00000431404.2:c.-59-17C>G
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000419555
  ensembl transcript: ENST00000493322
  gene symbol: TAF6
  hgvsc: ENST00000493322.1:c.-22-54C>G
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000399982
  ensembl transcript: ENST00000437822
  gene symbol: TAF6
  hgvsc: ENST00000437822.2:c.53-17C>G
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000390073
  ensembl transcript: ENST00000449571
  gene symbol: TAF6
  hgvsc: ENST00000449571.1:c.-59-17C>G
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000412346
  ensembl transcript: ENST00000452438
  gene symbol: TAF6
  hgvsc: ENST00000452438.2:c.-59-17C>G
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl transcript: ENST00000497233
  gene symbol: TAF6
  hgvsc: ENST00000497233.1:n.418-17C>G
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000390220
  ensembl transcript: ENST00000417349
  gene symbol: TAF6
  hgvsc: ENST00000417349.1:c.-59-17C>G
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000406315
  ensembl transcript: ENST00000451699
  gene symbol: TAF6
  hgvsc: ENST00000451699.1:c.-59-17C>G
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000416396
  ensembl transcript: ENST00000452041
  gene symbol: TAF6
  hgvsc: ENST00000452041.1:c.-59-17C>G
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000410012
  ensembl transcript: ENST00000440225
  gene symbol: TAF6
  hgvsc: ENST00000440225.1:c.-59-17C>G
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000413614
  ensembl transcript: ENST00000421980
  gene symbol: TAF6
  hgvsc: ENST00000421980.1:c.-59-17C>G
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000389575
  ensembl transcript: ENST00000453269
  gene symbol: TAF6
  hgvsc: ENST00000453269.2:c.-59-17C>G
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000428071
  ensembl transcript: ENST00000520135
  gene symbol: TAF6
  hgvsc: ENST00000520135.1:c.-59-17C>G
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl transcript: ENST00000487288
  gene symbol: TAF6
  hgvsc: ENST00000487288.1:n.98-17C>G
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000427710
  ensembl transcript: ENST00000460673
  gene symbol: TAF6
  hgvsc: ENST00000460673.2:c.-59-17C>G
  variant of: http://identifiers.org/hgnc/11540
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1959
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Cys32Trp
num of homozygotes: 0
population: Latino
population: Other
population: European (Finnish)
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum

7-99711913-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99711913
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99711913
    reference: chr 7
allele count: 2
allele frequency: 2.021018593371059e-5
allele num: 98960
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl transcript: ENST00000497233
  gene symbol: TAF6
  hgvsc: ENST00000497233.1:n.418-22G>A
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000395627
  ensembl transcript: ENST00000431404
  gene symbol: TAF6
  hgvsc: ENST00000431404.2:c.-59-22G>A
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000406315
  ensembl transcript: ENST00000451699
  gene symbol: TAF6
  hgvsc: ENST00000451699.1:c.-59-22G>A
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000428639
  ensembl transcript: ENST00000523306
  gene symbol: TAF6
  hgvsc: ENST00000523306.1:c.-59-22G>A
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000416396
  ensembl transcript: ENST00000452041
  gene symbol: TAF6
  hgvsc: ENST00000452041.1:c.-59-22G>A
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000389575
  ensembl transcript: ENST00000453269
  gene symbol: TAF6
  hgvsc: ENST00000453269.2:c.-59-22G>A
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl transcript: ENST00000487288
  gene symbol: TAF6
  hgvsc: ENST00000487288.1:n.98-22G>A
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000399982
  ensembl transcript: ENST00000437822
  gene symbol: TAF6
  hgvsc: ENST00000437822.2:c.53-22G>A
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000390073
  ensembl transcript: ENST00000449571
  gene symbol: TAF6
  hgvsc: ENST00000449571.1:c.-59-22G>A
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000419760
  ensembl transcript: ENST00000472509
  gene symbol: TAF6
  hgvsc: ENST00000472509.1:c.91G>A
  hgvsp: ENSP00000419760.1:p.Ala31Thr
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000344537
  ensembl transcript: ENST00000344095
  gene symbol: TAF6
  hgvsc: ENST00000344095.4:c.-59-22G>A
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000428071
  ensembl transcript: ENST00000520135
  gene symbol: TAF6
  hgvsc: ENST00000520135.1:c.-59-22G>A
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000410012
  ensembl transcript: ENST00000440225
  gene symbol: TAF6
  hgvsc: ENST00000440225.1:c.-59-22G>A
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000407980
  ensembl transcript: ENST00000418432
  gene symbol: TAF6
  hgvsc: ENST00000418432.2:c.-230-22G>A
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000390220
  ensembl transcript: ENST00000417349
  gene symbol: TAF6
  hgvsc: ENST00000417349.1:c.-59-22G>A
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000419555
  ensembl transcript: ENST00000493322
  gene symbol: TAF6
  hgvsc: ENST00000493322.1:c.-22-59G>A
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000412346
  ensembl transcript: ENST00000452438
  gene symbol: TAF6
  hgvsc: ENST00000452438.2:c.-59-22G>A
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000427710
  ensembl transcript: ENST00000460673
  gene symbol: TAF6
  hgvsc: ENST00000460673.2:c.-59-22G>A
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000413614
  ensembl transcript: ENST00000421980
  gene symbol: TAF6
  hgvsc: ENST00000421980.1:c.-59-22G>A
  variant of: http://identifiers.org/hgnc/11540
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11608
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2215
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala31Thr
num of homozygotes: 1
population: South Asian
population: Other
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum

7-99711920-AAAAG-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99711920
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99711916
    reference: chr 7
allele count: 9
allele frequency: 1.002941963091736e-4
allele num: 89736
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000389575
  ensembl transcript: ENST00000453269
  gene symbol: TAF6
  hgvsc: ENST00000453269.2:c.-59-33_-59-30delCTTT
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000416396
  ensembl transcript: ENST00000452041
  gene symbol: TAF6
  hgvsc: ENST00000452041.1:c.-59-33_-59-30delCTTT
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000390220
  ensembl transcript: ENST00000417349
  gene symbol: TAF6
  hgvsc: ENST00000417349.1:c.-59-33_-59-30delCTTT
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl transcript: ENST00000487288
  gene symbol: TAF6
  hgvsc: ENST00000487288.1:n.98-33_98-30delCTTT
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000399982
  ensembl transcript: ENST00000437822
  gene symbol: TAF6
  hgvsc: ENST00000437822.2:c.53-33_53-30delCTTT
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000390073
  ensembl transcript: ENST00000449571
  gene symbol: TAF6
  hgvsc: ENST00000449571.1:c.-59-33_-59-30delCTTT
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000407980
  ensembl transcript: ENST00000418432
  gene symbol: TAF6
  hgvsc: ENST00000418432.2:c.-230-33_-230-30delCTTT
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000406315
  ensembl transcript: ENST00000451699
  gene symbol: TAF6
  hgvsc: ENST00000451699.1:c.-59-33_-59-30delCTTT
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000427710
  ensembl transcript: ENST00000460673
  gene symbol: TAF6
  hgvsc: ENST00000460673.2:c.-59-33_-59-30delCTTT
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000344537
  ensembl transcript: ENST00000344095
  gene symbol: TAF6
  hgvsc: ENST00000344095.4:c.-59-33_-59-30delCTTT
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000410012
  ensembl transcript: ENST00000440225
  gene symbol: TAF6
  hgvsc: ENST00000440225.1:c.-59-33_-59-30delCTTT
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000419760
  ensembl transcript: ENST00000472509
  gene symbol: TAF6
  hgvsc: ENST00000472509.1:c.80_83delCTTT
  hgvsp: ENSP00000419760.1:p.Ser27PhefsTer37
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl transcript: ENST00000497233
  gene symbol: TAF6
  hgvsc: ENST00000497233.1:n.418-33_418-30delCTTT
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000428071
  ensembl transcript: ENST00000520135
  gene symbol: TAF6
  hgvsc: ENST00000520135.1:c.-59-33_-59-30delCTTT
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000428639
  ensembl transcript: ENST00000523306
  gene symbol: TAF6
  hgvsc: ENST00000523306.1:c.-59-33_-59-30delCTTT
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000419555
  ensembl transcript: ENST00000493322
  gene symbol: TAF6
  hgvsc: ENST00000493322.1:c.-22-70_-22-67delCTTT
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000395627
  ensembl transcript: ENST00000431404
  gene symbol: TAF6
  hgvsc: ENST00000431404.2:c.-59-33_-59-30delCTTT
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000412346
  ensembl transcript: ENST00000452438
  gene symbol: TAF6
  hgvsc: ENST00000452438.2:c.-59-33_-59-30delCTTT
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000413614
  ensembl transcript: ENST00000421980
  gene symbol: TAF6
  hgvsc: ENST00000421980.1:c.-59-33_-59-30delCTTT
  variant of: http://identifiers.org/hgnc/11540
canonical: false
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14516
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4285
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser27PhefsTer37
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: African
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: AAAAG
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD

7-99711924-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99711924
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99711924
    reference: chr 7
allele count: 1
allele frequency: 1.202877282459643e-5
allele num: 83134
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl transcript: ENST00000497233
  gene symbol: TAF6
  hgvsc: ENST00000497233.1:n.418-33C>A
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000389575
  ensembl transcript: ENST00000453269
  gene symbol: TAF6
  hgvsc: ENST00000453269.2:c.-59-33C>A
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000412346
  ensembl transcript: ENST00000452438
  gene symbol: TAF6
  hgvsc: ENST00000452438.2:c.-59-33C>A
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000419760
  ensembl transcript: ENST00000472509
  gene symbol: TAF6
  hgvsc: ENST00000472509.1:c.80C>A
  hgvsp: ENSP00000419760.1:p.Ser27Tyr
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000410012
  ensembl transcript: ENST00000440225
  gene symbol: TAF6
  hgvsc: ENST00000440225.1:c.-59-33C>A
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000390073
  ensembl transcript: ENST00000449571
  gene symbol: TAF6
  hgvsc: ENST00000449571.1:c.-59-33C>A
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000427710
  ensembl transcript: ENST00000460673
  gene symbol: TAF6
  hgvsc: ENST00000460673.2:c.-59-33C>A
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000390220
  ensembl transcript: ENST00000417349
  gene symbol: TAF6
  hgvsc: ENST00000417349.1:c.-59-33C>A
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl transcript: ENST00000487288
  gene symbol: TAF6
  hgvsc: ENST00000487288.1:n.98-33C>A
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000407980
  ensembl transcript: ENST00000418432
  gene symbol: TAF6
  hgvsc: ENST00000418432.2:c.-230-33C>A
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000406315
  ensembl transcript: ENST00000451699
  gene symbol: TAF6
  hgvsc: ENST00000451699.1:c.-59-33C>A
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000399982
  ensembl transcript: ENST00000437822
  gene symbol: TAF6
  hgvsc: ENST00000437822.2:c.53-33C>A
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000428639
  ensembl transcript: ENST00000523306
  gene symbol: TAF6
  hgvsc: ENST00000523306.1:c.-59-33C>A
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000344537
  ensembl transcript: ENST00000344095
  gene symbol: TAF6
  hgvsc: ENST00000344095.4:c.-59-33C>A
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000428071
  ensembl transcript: ENST00000520135
  gene symbol: TAF6
  hgvsc: ENST00000520135.1:c.-59-33C>A
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000395627
  ensembl transcript: ENST00000431404
  gene symbol: TAF6
  hgvsc: ENST00000431404.2:c.-59-33C>A
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000419555
  ensembl transcript: ENST00000493322
  gene symbol: TAF6
  hgvsc: ENST00000493322.1:c.-22-70C>A
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000416396
  ensembl transcript: ENST00000452041
  gene symbol: TAF6
  hgvsc: ENST00000452041.1:c.-59-33C>A
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000413614
  ensembl transcript: ENST00000421980
  gene symbol: TAF6
  hgvsc: ENST00000421980.1:c.-59-33C>A
  variant of: http://identifiers.org/hgnc/11540
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2079
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser27Tyr
num of homozygotes: 0
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
reference allele: G
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum

7-99711928-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99711928
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99711928
    reference: chr 7
allele count: 3
allele frequency: 3.770454716838851e-5
allele num: 79566
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000399982
  ensembl transcript: ENST00000437822
  gene symbol: TAF6
  hgvsc: ENST00000437822.2:c.53-37G>A
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000406315
  ensembl transcript: ENST00000451699
  gene symbol: TAF6
  hgvsc: ENST00000451699.1:c.-59-37G>A
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000344537
  ensembl transcript: ENST00000344095
  gene symbol: TAF6
  hgvsc: ENST00000344095.4:c.-59-37G>A
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000419760
  ensembl transcript: ENST00000472509
  gene symbol: TAF6
  hgvsc: ENST00000472509.1:c.76G>A
  hgvsp: ENSP00000419760.1:p.Val26Ile
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000390220
  ensembl transcript: ENST00000417349
  gene symbol: TAF6
  hgvsc: ENST00000417349.1:c.-59-37G>A
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000395627
  ensembl transcript: ENST00000431404
  gene symbol: TAF6
  hgvsc: ENST00000431404.2:c.-59-37G>A
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000407980
  ensembl transcript: ENST00000418432
  gene symbol: TAF6
  hgvsc: ENST00000418432.2:c.-230-37G>A
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl transcript: ENST00000497233
  gene symbol: TAF6
  hgvsc: ENST00000497233.1:n.418-37G>A
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000412346
  ensembl transcript: ENST00000452438
  gene symbol: TAF6
  hgvsc: ENST00000452438.2:c.-59-37G>A
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000416396
  ensembl transcript: ENST00000452041
  gene symbol: TAF6
  hgvsc: ENST00000452041.1:c.-59-37G>A
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000427710
  ensembl transcript: ENST00000460673
  gene symbol: TAF6
  hgvsc: ENST00000460673.2:c.-59-37G>A
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl transcript: ENST00000487288
  gene symbol: TAF6
  hgvsc: ENST00000487288.1:n.98-37G>A
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000410012
  ensembl transcript: ENST00000440225
  gene symbol: TAF6
  hgvsc: ENST00000440225.1:c.-59-37G>A
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000428071
  ensembl transcript: ENST00000520135
  gene symbol: TAF6
  hgvsc: ENST00000520135.1:c.-59-37G>A
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000390073
  ensembl transcript: ENST00000449571
  gene symbol: TAF6
  hgvsc: ENST00000449571.1:c.-59-37G>A
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000419555
  ensembl transcript: ENST00000493322
  gene symbol: TAF6
  hgvsc: ENST00000493322.1:c.-22-74G>A
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000389575
  ensembl transcript: ENST00000453269
  gene symbol: TAF6
  hgvsc: ENST00000453269.2:c.-59-37G>A
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000428639
  ensembl transcript: ENST00000523306
  gene symbol: TAF6
  hgvsc: ENST00000523306.1:c.-59-37G>A
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000413614
  ensembl transcript: ENST00000421980
  gene symbol: TAF6
  hgvsc: ENST00000421980.1:c.-59-37G>A
  variant of: http://identifiers.org/hgnc/11540
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6020
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2531
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3487
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Val26Ile
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Latino
population: Other
reference allele: C
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum

7-99711928-CG-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99711928
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99711927
    reference: chr 7
allele count: 1
allele frequency: 1.256818238946284e-5
allele num: 79566
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000412346
  ensembl transcript: ENST00000452438
  gene symbol: TAF6
  hgvsc: ENST00000452438.2:c.-59-38delC
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000399982
  ensembl transcript: ENST00000437822
  gene symbol: TAF6
  hgvsc: ENST00000437822.2:c.53-38delC
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000395627
  ensembl transcript: ENST00000431404
  gene symbol: TAF6
  hgvsc: ENST00000431404.2:c.-59-38delC
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000410012
  ensembl transcript: ENST00000440225
  gene symbol: TAF6
  hgvsc: ENST00000440225.1:c.-59-38delC
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000419760
  ensembl transcript: ENST00000472509
  gene symbol: TAF6
  hgvsc: ENST00000472509.1:c.75delC
  hgvsp: ENSP00000419760.1:p.His25GlnfsTer40
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000390073
  ensembl transcript: ENST00000449571
  gene symbol: TAF6
  hgvsc: ENST00000449571.1:c.-59-38delC
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl transcript: ENST00000497233
  gene symbol: TAF6
  hgvsc: ENST00000497233.1:n.418-38delC
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000389575
  ensembl transcript: ENST00000453269
  gene symbol: TAF6
  hgvsc: ENST00000453269.2:c.-59-38delC
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl transcript: ENST00000487288
  gene symbol: TAF6
  hgvsc: ENST00000487288.1:n.98-38delC
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000428071
  ensembl transcript: ENST00000520135
  gene symbol: TAF6
  hgvsc: ENST00000520135.1:c.-59-38delC
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000406315
  ensembl transcript: ENST00000451699
  gene symbol: TAF6
  hgvsc: ENST00000451699.1:c.-59-38delC
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000428639
  ensembl transcript: ENST00000523306
  gene symbol: TAF6
  hgvsc: ENST00000523306.1:c.-59-38delC
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000427710
  ensembl transcript: ENST00000460673
  gene symbol: TAF6
  hgvsc: ENST00000460673.2:c.-59-38delC
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000390220
  ensembl transcript: ENST00000417349
  gene symbol: TAF6
  hgvsc: ENST00000417349.1:c.-59-38delC
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000344537
  ensembl transcript: ENST00000344095
  gene symbol: TAF6
  hgvsc: ENST00000344095.4:c.-59-38delC
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000413614
  ensembl transcript: ENST00000421980
  gene symbol: TAF6
  hgvsc: ENST00000421980.1:c.-59-38delC
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000416396
  ensembl transcript: ENST00000452041
  gene symbol: TAF6
  hgvsc: ENST00000452041.1:c.-59-38delC
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000407980
  ensembl transcript: ENST00000418432
  gene symbol: TAF6
  hgvsc: ENST00000418432.2:c.-230-38delC
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000419555
  ensembl transcript: ENST00000493322
  gene symbol: TAF6
  hgvsc: ENST00000493322.1:c.-22-75delC
  variant of: http://identifiers.org/hgnc/11540
canonical: false
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.His25GlnfsTer40
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
reference allele: CG
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ

7-99711929-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99711929
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99711929
    reference: chr 7
allele count: 2
allele frequency: 2.59000259000259e-5
allele num: 77220
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000419760
  ensembl transcript: ENST00000472509
  gene symbol: TAF6
  hgvsc: ENST00000472509.1:c.75C>T
  hgvsp: ENST00000472509.1:c.75C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000399982
  ensembl transcript: ENST00000437822
  gene symbol: TAF6
  hgvsc: ENST00000437822.2:c.53-38C>T
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000406315
  ensembl transcript: ENST00000451699
  gene symbol: TAF6
  hgvsc: ENST00000451699.1:c.-59-38C>T
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000390073
  ensembl transcript: ENST00000449571
  gene symbol: TAF6
  hgvsc: ENST00000449571.1:c.-59-38C>T
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl transcript: ENST00000497233
  gene symbol: TAF6
  hgvsc: ENST00000497233.1:n.418-38C>T
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000407980
  ensembl transcript: ENST00000418432
  gene symbol: TAF6
  hgvsc: ENST00000418432.2:c.-230-38C>T
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000390220
  ensembl transcript: ENST00000417349
  gene symbol: TAF6
  hgvsc: ENST00000417349.1:c.-59-38C>T
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000428639
  ensembl transcript: ENST00000523306
  gene symbol: TAF6
  hgvsc: ENST00000523306.1:c.-59-38C>T
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000416396
  ensembl transcript: ENST00000452041
  gene symbol: TAF6
  hgvsc: ENST00000452041.1:c.-59-38C>T
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000344537
  ensembl transcript: ENST00000344095
  gene symbol: TAF6
  hgvsc: ENST00000344095.4:c.-59-38C>T
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000389575
  ensembl transcript: ENST00000453269
  gene symbol: TAF6
  hgvsc: ENST00000453269.2:c.-59-38C>T
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000410012
  ensembl transcript: ENST00000440225
  gene symbol: TAF6
  hgvsc: ENST00000440225.1:c.-59-38C>T
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl transcript: ENST00000487288
  gene symbol: TAF6
  hgvsc: ENST00000487288.1:n.98-38C>T
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000395627
  ensembl transcript: ENST00000431404
  gene symbol: TAF6
  hgvsc: ENST00000431404.2:c.-59-38C>T
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000428071
  ensembl transcript: ENST00000520135
  gene symbol: TAF6
  hgvsc: ENST00000520135.1:c.-59-38C>T
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000413614
  ensembl transcript: ENST00000421980
  gene symbol: TAF6
  hgvsc: ENST00000421980.1:c.-59-38C>T
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000412346
  ensembl transcript: ENST00000452438
  gene symbol: TAF6
  hgvsc: ENST00000452438.2:c.-59-38C>T
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000419555
  ensembl transcript: ENST00000493322
  gene symbol: TAF6
  hgvsc: ENST00000493322.1:c.-22-75C>T
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000427710
  ensembl transcript: ENST00000460673
  gene symbol: TAF6
  hgvsc: ENST00000460673.2:c.-59-38C>T
  variant of: http://identifiers.org/hgnc/11540
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3454
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.His25His
num of homozygotes: 0
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum

7-99711939-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99711939
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99711939
    reference: chr 7
allele count: 2
allele frequency: 2.998590662388677e-5
allele num: 66698
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000395627
  ensembl transcript: ENST00000431404
  gene symbol: TAF6
  hgvsc: ENST00000431404.2:c.-59-48C>G
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000416396
  ensembl transcript: ENST00000452041
  gene symbol: TAF6
  hgvsc: ENST00000452041.1:c.-59-48C>G
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000390073
  ensembl transcript: ENST00000449571
  gene symbol: TAF6
  hgvsc: ENST00000449571.1:c.-59-48C>G
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000419760
  ensembl transcript: ENST00000472509
  gene symbol: TAF6
  hgvsc: ENST00000472509.1:c.65C>G
  hgvsp: ENSP00000419760.1:p.Pro22Arg
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000428639
  ensembl transcript: ENST00000523306
  gene symbol: TAF6
  hgvsc: ENST00000523306.1:c.-59-48C>G
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl transcript: ENST00000497233
  gene symbol: TAF6
  hgvsc: ENST00000497233.1:n.418-48C>G
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000427710
  ensembl transcript: ENST00000460673
  gene symbol: TAF6
  hgvsc: ENST00000460673.2:c.-59-48C>G
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000399982
  ensembl transcript: ENST00000437822
  gene symbol: TAF6
  hgvsc: ENST00000437822.2:c.53-48C>G
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000344537
  ensembl transcript: ENST00000344095
  gene symbol: TAF6
  hgvsc: ENST00000344095.4:c.-59-48C>G
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl transcript: ENST00000487288
  gene symbol: TAF6
  hgvsc: ENST00000487288.1:n.98-48C>G
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000390220
  ensembl transcript: ENST00000417349
  gene symbol: TAF6
  hgvsc: ENST00000417349.1:c.-59-48C>G
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000410012
  ensembl transcript: ENST00000440225
  gene symbol: TAF6
  hgvsc: ENST00000440225.1:c.-59-48C>G
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000406315
  ensembl transcript: ENST00000451699
  gene symbol: TAF6
  hgvsc: ENST00000451699.1:c.-59-48C>G
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000413614
  ensembl transcript: ENST00000421980
  gene symbol: TAF6
  hgvsc: ENST00000421980.1:c.-59-48C>G
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000419555
  ensembl transcript: ENST00000493322
  gene symbol: TAF6
  hgvsc: ENST00000493322.1:c.-22-85C>G
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000407980
  ensembl transcript: ENST00000418432
  gene symbol: TAF6
  hgvsc: ENST00000418432.2:c.-230-48C>G
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000412346
  ensembl transcript: ENST00000452438
  gene symbol: TAF6
  hgvsc: ENST00000452438.2:c.-59-48C>G
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000389575
  ensembl transcript: ENST00000453269
  gene symbol: TAF6
  hgvsc: ENST00000453269.2:c.-59-48C>G
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000428071
  ensembl transcript: ENST00000520135
  gene symbol: TAF6
  hgvsc: ENST00000520135.1:c.-59-48C>G
  variant of: http://identifiers.org/hgnc/11540
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5985
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5046
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro22Arg
num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum

7-99711940-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99711940
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99711940
    reference: chr 7
allele count: 5
allele frequency: 7.620324930655044e-5
allele num: 65614
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000390073
  ensembl transcript: ENST00000449571
  gene symbol: TAF6
  hgvsc: ENST00000449571.1:c.-59-49C>T
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000406315
  ensembl transcript: ENST00000451699
  gene symbol: TAF6
  hgvsc: ENST00000451699.1:c.-59-49C>T
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000390220
  ensembl transcript: ENST00000417349
  gene symbol: TAF6
  hgvsc: ENST00000417349.1:c.-59-49C>T
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000427710
  ensembl transcript: ENST00000460673
  gene symbol: TAF6
  hgvsc: ENST00000460673.2:c.-59-49C>T
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000395627
  ensembl transcript: ENST00000431404
  gene symbol: TAF6
  hgvsc: ENST00000431404.2:c.-59-49C>T
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl transcript: ENST00000487288
  gene symbol: TAF6
  hgvsc: ENST00000487288.1:n.98-49C>T
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl transcript: ENST00000497233
  gene symbol: TAF6
  hgvsc: ENST00000497233.1:n.418-49C>T
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000413614
  ensembl transcript: ENST00000421980
  gene symbol: TAF6
  hgvsc: ENST00000421980.1:c.-59-49C>T
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000344537
  ensembl transcript: ENST00000344095
  gene symbol: TAF6
  hgvsc: ENST00000344095.4:c.-59-49C>T
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000419760
  ensembl transcript: ENST00000472509
  gene symbol: TAF6
  hgvsc: ENST00000472509.1:c.64C>T
  hgvsp: ENSP00000419760.1:p.Pro22Ser
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000410012
  ensembl transcript: ENST00000440225
  gene symbol: TAF6
  hgvsc: ENST00000440225.1:c.-59-49C>T
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000416396
  ensembl transcript: ENST00000452041
  gene symbol: TAF6
  hgvsc: ENST00000452041.1:c.-59-49C>T
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000399982
  ensembl transcript: ENST00000437822
  gene symbol: TAF6
  hgvsc: ENST00000437822.2:c.53-49C>T
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000428639
  ensembl transcript: ENST00000523306
  gene symbol: TAF6
  hgvsc: ENST00000523306.1:c.-59-49C>T
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000389575
  ensembl transcript: ENST00000453269
  gene symbol: TAF6
  hgvsc: ENST00000453269.2:c.-59-49C>T
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000412346
  ensembl transcript: ENST00000452438
  gene symbol: TAF6
  hgvsc: ENST00000452438.2:c.-59-49C>T
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000407980
  ensembl transcript: ENST00000418432
  gene symbol: TAF6
  hgvsc: ENST00000418432.2:c.-230-49C>T
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000419555
  ensembl transcript: ENST00000493322
  gene symbol: TAF6
  hgvsc: ENST00000493322.1:c.-22-86C>T
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000428071
  ensembl transcript: ENST00000520135
  gene symbol: TAF6
  hgvsc: ENST00000520135.1:c.-59-49C>T
  variant of: http://identifiers.org/hgnc/11540
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5829
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Pro22Ser
num of homozygotes: 0
population: African
population: Latino
population: Other
population: East Asian
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum

7-99711947-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99711947
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99711947
    reference: chr 7
allele count: 1
allele frequency: 1.739190928380118e-5
allele num: 57498
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000419760
  ensembl transcript: ENST00000472509
  gene symbol: TAF6
  hgvsc: ENST00000472509.1:c.57C>T
  hgvsp: ENST00000472509.1:c.57C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000344537
  ensembl transcript: ENST00000344095
  gene symbol: TAF6
  hgvsc: ENST00000344095.4:c.-59-56C>T
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000406315
  ensembl transcript: ENST00000451699
  gene symbol: TAF6
  hgvsc: ENST00000451699.1:c.-59-56C>T
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl transcript: ENST00000497233
  gene symbol: TAF6
  hgvsc: ENST00000497233.1:n.418-56C>T
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000389575
  ensembl transcript: ENST00000453269
  gene symbol: TAF6
  hgvsc: ENST00000453269.2:c.-59-56C>T
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000399982
  ensembl transcript: ENST00000437822
  gene symbol: TAF6
  hgvsc: ENST00000437822.2:c.53-56C>T
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000395627
  ensembl transcript: ENST00000431404
  gene symbol: TAF6
  hgvsc: ENST00000431404.2:c.-59-56C>T
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl transcript: ENST00000487288
  gene symbol: TAF6
  hgvsc: ENST00000487288.1:n.98-56C>T
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000428639
  ensembl transcript: ENST00000523306
  gene symbol: TAF6
  hgvsc: ENST00000523306.1:c.-59-56C>T
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000390073
  ensembl transcript: ENST00000449571
  gene symbol: TAF6
  hgvsc: ENST00000449571.1:c.-59-56C>T
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000413614
  ensembl transcript: ENST00000421980
  gene symbol: TAF6
  hgvsc: ENST00000421980.1:c.-59-56C>T
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000428071
  ensembl transcript: ENST00000520135
  gene symbol: TAF6
  hgvsc: ENST00000520135.1:c.-59-56C>T
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000412346
  ensembl transcript: ENST00000452438
  gene symbol: TAF6
  hgvsc: ENST00000452438.2:c.-59-56C>T
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000427710
  ensembl transcript: ENST00000460673
  gene symbol: TAF6
  hgvsc: ENST00000460673.2:c.-59-56C>T
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000390220
  ensembl transcript: ENST00000417349
  gene symbol: TAF6
  hgvsc: ENST00000417349.1:c.-59-56C>T
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000416396
  ensembl transcript: ENST00000452041
  gene symbol: TAF6
  hgvsc: ENST00000452041.1:c.-59-56C>T
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000410012
  ensembl transcript: ENST00000440225
  gene symbol: TAF6
  hgvsc: ENST00000440225.1:c.-59-56C>T
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000419555
  ensembl transcript: ENST00000493322
  gene symbol: TAF6
  hgvsc: ENST00000493322.1:c.-22-93C>T
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000407980
  ensembl transcript: ENST00000418432
  gene symbol: TAF6
  hgvsc: ENST00000418432.2:c.-230-56C>T
  variant of: http://identifiers.org/hgnc/11540
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 22703
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1187
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly19Gly
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum

7-99711951-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99711951
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99711951
    reference: chr 7
allele count: 22
allele frequency: 4.01899890390939e-4
allele num: 54740
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000390220
  ensembl transcript: ENST00000417349
  gene symbol: TAF6
  hgvsc: ENST00000417349.1:c.-59-60T>C
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000428639
  ensembl transcript: ENST00000523306
  gene symbol: TAF6
  hgvsc: ENST00000523306.1:c.-59-60T>C
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000428071
  ensembl transcript: ENST00000520135
  gene symbol: TAF6
  hgvsc: ENST00000520135.1:c.-59-60T>C
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000389575
  ensembl transcript: ENST00000453269
  gene symbol: TAF6
  hgvsc: ENST00000453269.2:c.-59-60T>C
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl transcript: ENST00000497233
  gene symbol: TAF6
  hgvsc: ENST00000497233.1:n.418-60T>C
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000399982
  ensembl transcript: ENST00000437822
  gene symbol: TAF6
  hgvsc: ENST00000437822.2:c.53-60T>C
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000410012
  ensembl transcript: ENST00000440225
  gene symbol: TAF6
  hgvsc: ENST00000440225.1:c.-59-60T>C
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000413614
  ensembl transcript: ENST00000421980
  gene symbol: TAF6
  hgvsc: ENST00000421980.1:c.-59-60T>C
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000419760
  ensembl transcript: ENST00000472509
  gene symbol: TAF6
  hgvsc: ENST00000472509.1:c.53T>C
  hgvsp: ENSP00000419760.1:p.Val18Ala
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000395627
  ensembl transcript: ENST00000431404
  gene symbol: TAF6
  hgvsc: ENST00000431404.2:c.-59-60T>C
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000416396
  ensembl transcript: ENST00000452041
  gene symbol: TAF6
  hgvsc: ENST00000452041.1:c.-59-60T>C
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000406315
  ensembl transcript: ENST00000451699
  gene symbol: TAF6
  hgvsc: ENST00000451699.1:c.-59-60T>C
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000390073
  ensembl transcript: ENST00000449571
  gene symbol: TAF6
  hgvsc: ENST00000449571.1:c.-59-60T>C
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000344537
  ensembl transcript: ENST00000344095
  gene symbol: TAF6
  hgvsc: ENST00000344095.4:c.-59-60T>C
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000412346
  ensembl transcript: ENST00000452438
  gene symbol: TAF6
  hgvsc: ENST00000452438.2:c.-59-60T>C
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000407980
  ensembl transcript: ENST00000418432
  gene symbol: TAF6
  hgvsc: ENST00000418432.2:c.-230-60T>C
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000419555
  ensembl transcript: ENST00000493322
  gene symbol: TAF6
  hgvsc: ENST00000493322.1:c.-22-97T>C
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000427710
  ensembl transcript: ENST00000460673
  gene symbol: TAF6
  hgvsc: ENST00000460673.2:c.-59-60T>C
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl transcript: ENST00000487288
  gene symbol: TAF6
  hgvsc: ENST00000487288.1:n.98-60T>C
  variant of: http://identifiers.org/hgnc/11540
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22918
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Val18Ala
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD

7-99711965-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99711965
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99711965
    reference: chr 7
allele count: 36
allele frequency: 9.209987720016373e-4
allele num: 39088
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000395627
  ensembl transcript: ENST00000431404
  gene symbol: TAF6
  hgvsc: ENST00000431404.2:c.-59-74C>T
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000413614
  ensembl transcript: ENST00000421980
  gene symbol: TAF6
  hgvsc: ENST00000421980.1:c.-59-74C>T
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl transcript: ENST00000497233
  gene symbol: TAF6
  hgvsc: ENST00000497233.1:n.418-74C>T
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000419760
  ensembl transcript: ENST00000472509
  gene symbol: TAF6
  hgvsc: ENST00000472509.1:c.39C>T
  hgvsp: ENST00000472509.1:c.39C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000406315
  ensembl transcript: ENST00000451699
  gene symbol: TAF6
  hgvsc: ENST00000451699.1:c.-59-74C>T
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000407980
  ensembl transcript: ENST00000418432
  gene symbol: TAF6
  hgvsc: ENST00000418432.2:c.-230-74C>T
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000428071
  ensembl transcript: ENST00000520135
  gene symbol: TAF6
  hgvsc: ENST00000520135.1:c.-59-74C>T
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000419555
  ensembl transcript: ENST00000493322
  gene symbol: TAF6
  hgvsc: ENST00000493322.1:c.-22-111C>T
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl transcript: ENST00000487288
  gene symbol: TAF6
  hgvsc: ENST00000487288.1:n.98-74C>T
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000410012
  ensembl transcript: ENST00000440225
  gene symbol: TAF6
  hgvsc: ENST00000440225.1:c.-59-74C>T
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000428639
  ensembl transcript: ENST00000523306
  gene symbol: TAF6
  hgvsc: ENST00000523306.1:c.-59-74C>T
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000416396
  ensembl transcript: ENST00000452041
  gene symbol: TAF6
  hgvsc: ENST00000452041.1:c.-59-74C>T
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000390220
  ensembl transcript: ENST00000417349
  gene symbol: TAF6
  hgvsc: ENST00000417349.1:c.-59-74C>T
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000399982
  ensembl transcript: ENST00000437822
  gene symbol: TAF6
  hgvsc: ENST00000437822.2:c.53-74C>T
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000389575
  ensembl transcript: ENST00000453269
  gene symbol: TAF6
  hgvsc: ENST00000453269.2:c.-59-74C>T
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000390073
  ensembl transcript: ENST00000449571
  gene symbol: TAF6
  hgvsc: ENST00000449571.1:c.-59-74C>T
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000344537
  ensembl transcript: ENST00000344095
  gene symbol: TAF6
  hgvsc: ENST00000344095.4:c.-59-74C>T
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000427710
  ensembl transcript: ENST00000460673
  gene symbol: TAF6
  hgvsc: ENST00000460673.2:c.-59-74C>T
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000412346
  ensembl transcript: ENST00000452438
  gene symbol: TAF6
  hgvsc: ENST00000452438.2:c.-59-74C>T
  variant of: http://identifiers.org/hgnc/11540
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.His13His
num of homozygotes: 0
population: African
population: Latino
population: Other
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum

7-99711972-CAG-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99711972
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99711970
    reference: chr 7
allele count: 6
allele frequency: 1.827374063470793e-4
allele num: 32834
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000344537
  ensembl transcript: ENST00000344095
  gene symbol: TAF6
  hgvsc: ENST00000344095.4:c.-59-83_-59-82delCT
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000406315
  ensembl transcript: ENST00000451699
  gene symbol: TAF6
  hgvsc: ENST00000451699.1:c.-59-83_-59-82delCT
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000428639
  ensembl transcript: ENST00000523306
  gene symbol: TAF6
  hgvsc: ENST00000523306.1:c.-59-83_-59-82delCT
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000419555
  ensembl transcript: ENST00000493322
  gene symbol: TAF6
  hgvsc: ENST00000493322.1:c.-22-120_-22-119delCT
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000390073
  ensembl transcript: ENST00000449571
  gene symbol: TAF6
  hgvsc: ENST00000449571.1:c.-59-83_-59-82delCT
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000416396
  ensembl transcript: ENST00000452041
  gene symbol: TAF6
  hgvsc: ENST00000452041.1:c.-59-83_-59-82delCT
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000407980
  ensembl transcript: ENST00000418432
  gene symbol: TAF6
  hgvsc: ENST00000418432.2:c.-230-83_-230-82delCT
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000419760
  ensembl transcript: ENST00000472509
  gene symbol: TAF6
  hgvsc: ENST00000472509.1:c.30_31delCT
  hgvsp: ENSP00000419760.1:p.Cys11SerfsTer49
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl transcript: ENST00000497233
  gene symbol: TAF6
  hgvsc: ENST00000497233.1:n.418-83_418-82delCT
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000389575
  ensembl transcript: ENST00000453269
  gene symbol: TAF6
  hgvsc: ENST00000453269.2:c.-59-83_-59-82delCT
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000410012
  ensembl transcript: ENST00000440225
  gene symbol: TAF6
  hgvsc: ENST00000440225.1:c.-59-83_-59-82delCT
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000399982
  ensembl transcript: ENST00000437822
  gene symbol: TAF6
  hgvsc: ENST00000437822.2:c.53-83_53-82delCT
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000395627
  ensembl transcript: ENST00000431404
  gene symbol: TAF6
  hgvsc: ENST00000431404.2:c.-59-83_-59-82delCT
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000413614
  ensembl transcript: ENST00000421980
  gene symbol: TAF6
  hgvsc: ENST00000421980.1:c.-59-83_-59-82delCT
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000390220
  ensembl transcript: ENST00000417349
  gene symbol: TAF6
  hgvsc: ENST00000417349.1:c.-59-83_-59-82delCT
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000412346
  ensembl transcript: ENST00000452438
  gene symbol: TAF6
  hgvsc: ENST00000452438.2:c.-59-83_-59-82delCT
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000427710
  ensembl transcript: ENST00000460673
  gene symbol: TAF6
  hgvsc: ENST00000460673.2:c.-59-83_-59-82delCT
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000428071
  ensembl transcript: ENST00000520135
  gene symbol: TAF6
  hgvsc: ENST00000520135.1:c.-59-83_-59-82delCT
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl transcript: ENST00000487288
  gene symbol: TAF6
  hgvsc: ENST00000487288.1:n.98-83_98-82delCT
  variant of: http://identifiers.org/hgnc/11540
canonical: false
consequence: frameshift
filter: VQSRTrancheINDEL95.00to96.00
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 584
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Cys11SerfsTer49
num of homozygotes: 0
population: South Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: East Asian
population: African
population: European (Finnish)
reference allele: CAG
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum

7-99711972-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99711972
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99711972
    reference: chr 7
allele count: 1
allele frequency: 3.045623439117987e-5
allele num: 32834
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000344537
  ensembl transcript: ENST00000344095
  gene symbol: TAF6
  hgvsc: ENST00000344095.4:c.-59-81G>C
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000399982
  ensembl transcript: ENST00000437822
  gene symbol: TAF6
  hgvsc: ENST00000437822.2:c.53-81G>C
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000419555
  ensembl transcript: ENST00000493322
  gene symbol: TAF6
  hgvsc: ENST00000493322.1:c.-22-118G>C
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000419760
  ensembl transcript: ENST00000472509
  gene symbol: TAF6
  hgvsc: ENST00000472509.1:c.32G>C
  hgvsp: ENSP00000419760.1:p.Cys11Ser
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000410012
  ensembl transcript: ENST00000440225
  gene symbol: TAF6
  hgvsc: ENST00000440225.1:c.-59-81G>C
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000395627
  ensembl transcript: ENST00000431404
  gene symbol: TAF6
  hgvsc: ENST00000431404.2:c.-59-81G>C
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl transcript: ENST00000487288
  gene symbol: TAF6
  hgvsc: ENST00000487288.1:n.98-81G>C
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000413614
  ensembl transcript: ENST00000421980
  gene symbol: TAF6
  hgvsc: ENST00000421980.1:c.-59-81G>C
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000428071
  ensembl transcript: ENST00000520135
  gene symbol: TAF6
  hgvsc: ENST00000520135.1:c.-59-81G>C
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000416396
  ensembl transcript: ENST00000452041
  gene symbol: TAF6
  hgvsc: ENST00000452041.1:c.-59-81G>C
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000407980
  ensembl transcript: ENST00000418432
  gene symbol: TAF6
  hgvsc: ENST00000418432.2:c.-230-81G>C
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000390220
  ensembl transcript: ENST00000417349
  gene symbol: TAF6
  hgvsc: ENST00000417349.1:c.-59-81G>C
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000428639
  ensembl transcript: ENST00000523306
  gene symbol: TAF6
  hgvsc: ENST00000523306.1:c.-59-81G>C
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl transcript: ENST00000497233
  gene symbol: TAF6
  hgvsc: ENST00000497233.1:n.418-81G>C
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000390073
  ensembl transcript: ENST00000449571
  gene symbol: TAF6
  hgvsc: ENST00000449571.1:c.-59-81G>C
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000406315
  ensembl transcript: ENST00000451699
  gene symbol: TAF6
  hgvsc: ENST00000451699.1:c.-59-81G>C
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000427710
  ensembl transcript: ENST00000460673
  gene symbol: TAF6
  hgvsc: ENST00000460673.2:c.-59-81G>C
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000389575
  ensembl transcript: ENST00000453269
  gene symbol: TAF6
  hgvsc: ENST00000453269.2:c.-59-81G>C
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000412346
  ensembl transcript: ENST00000452438
  gene symbol: TAF6
  hgvsc: ENST00000452438.2:c.-59-81G>C
  variant of: http://identifiers.org/hgnc/11540
canonical: false
consequence: missense
filter: VQSRTrancheINDEL95.00to96.00
genotype depth: GenotypeDepth
  all individuals: 2553
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Cys11Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: European (Finnish)
population: Other
population: East Asian
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum

7-99711973-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99711973
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99711973
    reference: chr 7
allele count: 1
allele frequency: 3.111387678904791e-5
allele num: 32140
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000419760
  ensembl transcript: ENST00000472509
  gene symbol: TAF6
  hgvsc: ENST00000472509.1:c.31T>C
  hgvsp: ENSP00000419760.1:p.Cys11Arg
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000407980
  ensembl transcript: ENST00000418432
  gene symbol: TAF6
  hgvsc: ENST00000418432.2:c.-230-82T>C
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000428071
  ensembl transcript: ENST00000520135
  gene symbol: TAF6
  hgvsc: ENST00000520135.1:c.-59-82T>C
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl transcript: ENST00000487288
  gene symbol: TAF6
  hgvsc: ENST00000487288.1:n.98-82T>C
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl transcript: ENST00000497233
  gene symbol: TAF6
  hgvsc: ENST00000497233.1:n.418-82T>C
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000399982
  ensembl transcript: ENST00000437822
  gene symbol: TAF6
  hgvsc: ENST00000437822.2:c.53-82T>C
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000413614
  ensembl transcript: ENST00000421980
  gene symbol: TAF6
  hgvsc: ENST00000421980.1:c.-59-82T>C
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000390220
  ensembl transcript: ENST00000417349
  gene symbol: TAF6
  hgvsc: ENST00000417349.1:c.-59-82T>C
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000427710
  ensembl transcript: ENST00000460673
  gene symbol: TAF6
  hgvsc: ENST00000460673.2:c.-59-82T>C
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000395627
  ensembl transcript: ENST00000431404
  gene symbol: TAF6
  hgvsc: ENST00000431404.2:c.-59-82T>C
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000419555
  ensembl transcript: ENST00000493322
  gene symbol: TAF6
  hgvsc: ENST00000493322.1:c.-22-119T>C
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000410012
  ensembl transcript: ENST00000440225
  gene symbol: TAF6
  hgvsc: ENST00000440225.1:c.-59-82T>C
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000406315
  ensembl transcript: ENST00000451699
  gene symbol: TAF6
  hgvsc: ENST00000451699.1:c.-59-82T>C
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000428639
  ensembl transcript: ENST00000523306
  gene symbol: TAF6
  hgvsc: ENST00000523306.1:c.-59-82T>C
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000389575
  ensembl transcript: ENST00000453269
  gene symbol: TAF6
  hgvsc: ENST00000453269.2:c.-59-82T>C
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000412346
  ensembl transcript: ENST00000452438
  gene symbol: TAF6
  hgvsc: ENST00000452438.2:c.-59-82T>C
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000344537
  ensembl transcript: ENST00000344095
  gene symbol: TAF6
  hgvsc: ENST00000344095.4:c.-59-82T>C
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000390073
  ensembl transcript: ENST00000449571
  gene symbol: TAF6
  hgvsc: ENST00000449571.1:c.-59-82T>C
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000416396
  ensembl transcript: ENST00000452041
  gene symbol: TAF6
  hgvsc: ENST00000452041.1:c.-59-82T>C
  variant of: http://identifiers.org/hgnc/11540
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2528
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20108
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Cys11Arg
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: South Asian
population: Other
population: Latino
population: European (Finnish)
population: East Asian
reference allele: A
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum

7-99711976-GGAGGAACTCC-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99711976
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99711966
    reference: chr 7
allele count: 1
allele frequency: 3.319391887406227e-5
allele num: 30126
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000419760
  ensembl transcript: ENST00000472509
  gene symbol: TAF6
  hgvsc: ENST00000472509.1:c.18_27delGGAGTTCCTC
  hgvsp: ENSP00000419760.1:p.Glu7ProfsTer55
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000390220
  ensembl transcript: ENST00000417349
  gene symbol: TAF6
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000428639
  ensembl transcript: ENST00000523306
  gene symbol: TAF6
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000344537
  ensembl transcript: ENST00000344095
  gene symbol: TAF6
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000399982
  ensembl transcript: ENST00000437822
  gene symbol: TAF6
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000416396
  ensembl transcript: ENST00000452041
  gene symbol: TAF6
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000406315
  ensembl transcript: ENST00000451699
  gene symbol: TAF6
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000427710
  ensembl transcript: ENST00000460673
  gene symbol: TAF6
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000395627
  ensembl transcript: ENST00000431404
  gene symbol: TAF6
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000410012
  ensembl transcript: ENST00000440225
  gene symbol: TAF6
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl transcript: ENST00000497233
  gene symbol: TAF6
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl transcript: ENST00000487288
  gene symbol: TAF6
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000412346
  ensembl transcript: ENST00000452438
  gene symbol: TAF6
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000407980
  ensembl transcript: ENST00000418432
  gene symbol: TAF6
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000413614
  ensembl transcript: ENST00000421980
  gene symbol: TAF6
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000419555
  ensembl transcript: ENST00000493322
  gene symbol: TAF6
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000390073
  ensembl transcript: ENST00000449571
  gene symbol: TAF6
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000389575
  ensembl transcript: ENST00000453269
  gene symbol: TAF6
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000428071
  ensembl transcript: ENST00000520135
  gene symbol: TAF6
  variant of: http://identifiers.org/hgnc/11540
canonical: false
consequence: frameshift
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23845
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3528
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Glu7ProfsTer55
num of homozygotes: 0
population: Other
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
reference allele: GGAGGAACTCC
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum

7-99711986-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99711986
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99711986
    reference: chr 7
allele count: 8
allele frequency: 3.683241252302026e-4
allele num: 21720
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000413614
  ensembl transcript: ENST00000421980
  gene symbol: TAF6
  hgvsc: ENST00000421980.1:c.-59-95G>A
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000406315
  ensembl transcript: ENST00000451699
  gene symbol: TAF6
  hgvsc: ENST00000451699.1:c.-59-95G>A
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000419555
  ensembl transcript: ENST00000493322
  gene symbol: TAF6
  hgvsc: ENST00000493322.1:c.-22-132G>A
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000395627
  ensembl transcript: ENST00000431404
  gene symbol: TAF6
  hgvsc: ENST00000431404.2:c.-59-95G>A
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl transcript: ENST00000497233
  gene symbol: TAF6
  hgvsc: ENST00000497233.1:n.418-95G>A
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000412346
  ensembl transcript: ENST00000452438
  gene symbol: TAF6
  hgvsc: ENST00000452438.2:c.-59-95G>A
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000428639
  ensembl transcript: ENST00000523306
  gene symbol: TAF6
  hgvsc: ENST00000523306.1:c.-59-95G>A
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000399982
  ensembl transcript: ENST00000437822
  gene symbol: TAF6
  hgvsc: ENST00000437822.2:c.53-95G>A
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000390220
  ensembl transcript: ENST00000417349
  gene symbol: TAF6
  hgvsc: ENST00000417349.1:c.-59-95G>A
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000344537
  ensembl transcript: ENST00000344095
  gene symbol: TAF6
  hgvsc: ENST00000344095.4:c.-59-95G>A
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000419760
  ensembl transcript: ENST00000472509
  gene symbol: TAF6
  hgvsc: ENST00000472509.1:c.18G>A
  hgvsp: ENST00000472509.1:c.18G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000407980
  ensembl transcript: ENST00000418432
  gene symbol: TAF6
  hgvsc: ENST00000418432.2:c.-230-95G>A
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000427710
  ensembl transcript: ENST00000460673
  gene symbol: TAF6
  hgvsc: ENST00000460673.2:c.-59-95G>A
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000410012
  ensembl transcript: ENST00000440225
  gene symbol: TAF6
  hgvsc: ENST00000440225.1:c.-59-95G>A
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000390073
  ensembl transcript: ENST00000449571
  gene symbol: TAF6
  hgvsc: ENST00000449571.1:c.-59-95G>A
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl transcript: ENST00000487288
  gene symbol: TAF6
  hgvsc: ENST00000487288.1:n.98-95G>A
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000428071
  ensembl transcript: ENST00000520135
  gene symbol: TAF6
  hgvsc: ENST00000520135.1:c.-59-95G>A
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000416396
  ensembl transcript: ENST00000452041
  gene symbol: TAF6
  hgvsc: ENST00000452041.1:c.-59-95G>A
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000389575
  ensembl transcript: ENST00000453269
  gene symbol: TAF6
  hgvsc: ENST00000453269.2:c.-59-95G>A
  variant of: http://identifiers.org/hgnc/11540
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15263
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser6Ser
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: African
population: South Asian
population: Latino
reference allele: C
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: ClippingRankSum

7-99711987-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99711987
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99711987
    reference: chr 7
allele count: 7
allele frequency: 3.309066843150232e-4
allele num: 21154
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000395627
  ensembl transcript: ENST00000431404
  gene symbol: TAF6
  hgvsc: ENST00000431404.2:c.-59-96C>T
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000399982
  ensembl transcript: ENST00000437822
  gene symbol: TAF6
  hgvsc: ENST00000437822.2:c.53-96C>T
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000428639
  ensembl transcript: ENST00000523306
  gene symbol: TAF6
  hgvsc: ENST00000523306.1:c.-59-96C>T
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000428071
  ensembl transcript: ENST00000520135
  gene symbol: TAF6
  hgvsc: ENST00000520135.1:c.-59-96C>T
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl transcript: ENST00000487288
  gene symbol: TAF6
  hgvsc: ENST00000487288.1:n.98-96C>T
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000390073
  ensembl transcript: ENST00000449571
  gene symbol: TAF6
  hgvsc: ENST00000449571.1:c.-59-96C>T
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000406315
  ensembl transcript: ENST00000451699
  gene symbol: TAF6
  hgvsc: ENST00000451699.1:c.-59-96C>T
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000427710
  ensembl transcript: ENST00000460673
  gene symbol: TAF6
  hgvsc: ENST00000460673.2:c.-59-96C>T
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000390220
  ensembl transcript: ENST00000417349
  gene symbol: TAF6
  hgvsc: ENST00000417349.1:c.-59-96C>T
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000419760
  ensembl transcript: ENST00000472509
  gene symbol: TAF6
  hgvsc: ENST00000472509.1:c.17C>T
  hgvsp: ENSP00000419760.1:p.Ser6Leu
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000344537
  ensembl transcript: ENST00000344095
  gene symbol: TAF6
  hgvsc: ENST00000344095.4:c.-59-96C>T
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl transcript: ENST00000497233
  gene symbol: TAF6
  hgvsc: ENST00000497233.1:n.418-96C>T
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000389575
  ensembl transcript: ENST00000453269
  gene symbol: TAF6
  hgvsc: ENST00000453269.2:c.-59-96C>T
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000412346
  ensembl transcript: ENST00000452438
  gene symbol: TAF6
  hgvsc: ENST00000452438.2:c.-59-96C>T
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000413614
  ensembl transcript: ENST00000421980
  gene symbol: TAF6
  hgvsc: ENST00000421980.1:c.-59-96C>T
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000419555
  ensembl transcript: ENST00000493322
  gene symbol: TAF6
  hgvsc: ENST00000493322.1:c.-22-133C>T
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000410012
  ensembl transcript: ENST00000440225
  gene symbol: TAF6
  hgvsc: ENST00000440225.1:c.-59-96C>T
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000407980
  ensembl transcript: ENST00000418432
  gene symbol: TAF6
  hgvsc: ENST00000418432.2:c.-230-96C>T
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000416396
  ensembl transcript: ENST00000452041
  gene symbol: TAF6
  hgvsc: ENST00000452041.1:c.-59-96C>T
  variant of: http://identifiers.org/hgnc/11540
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser6Leu
num of homozygotes: 0
population: Latino
population: Other
population: African
population: South Asian
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD

http://identifiers.org/exac.variant/7-99711996-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99711996
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99711996
    reference: chr 7
allele count: 2
allele frequency: 1.102414287289163e-4
allele num: 18142
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000406315
  ensembl transcript: ENST00000451699
  gene symbol: TAF6
  hgvsc: ENST00000451699.1:c.-59-105T>G
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl transcript: ENST00000487288
  gene symbol: TAF6
  hgvsc: ENST00000487288.1:n.98-105T>G
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000419760
  ensembl transcript: ENST00000472509
  gene symbol: TAF6
  hgvsc: ENST00000472509.1:c.8T>G
  hgvsp: ENSP00000419760.1:p.Ile3Arg
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000412346
  ensembl transcript: ENST00000452438
  gene symbol: TAF6
  hgvsc: ENST00000452438.2:c.-59-105T>G
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000390073
  ensembl transcript: ENST00000449571
  gene symbol: TAF6
  hgvsc: ENST00000449571.1:c.-59-105T>G
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl transcript: ENST00000497233
  gene symbol: TAF6
  hgvsc: ENST00000497233.1:n.418-105T>G
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000419555
  ensembl transcript: ENST00000493322
  gene symbol: TAF6
  hgvsc: ENST00000493322.1:c.-22-142T>G
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000413614
  ensembl transcript: ENST00000421980
  gene symbol: TAF6
  hgvsc: ENST00000421980.1:c.-59-105T>G
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000428639
  ensembl transcript: ENST00000523306
  gene symbol: TAF6
  hgvsc: ENST00000523306.1:c.-59-105T>G
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000399982
  ensembl transcript: ENST00000437822
  gene symbol: TAF6
  hgvsc: ENST00000437822.2:c.53-105T>G
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000344537
  ensembl transcript: ENST00000344095
  gene symbol: TAF6
  hgvsc: ENST00000344095.4:c.-59-105T>G
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000390220
  ensembl transcript: ENST00000417349
  gene symbol: TAF6
  hgvsc: ENST00000417349.1:c.-59-105T>G
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000395627
  ensembl transcript: ENST00000431404
  gene symbol: TAF6
  hgvsc: ENST00000431404.2:c.-59-105T>G
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000416396
  ensembl transcript: ENST00000452041
  gene symbol: TAF6
  hgvsc: ENST00000452041.1:c.-59-105T>G
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000427710
  ensembl transcript: ENST00000460673
  gene symbol: TAF6
  hgvsc: ENST00000460673.2:c.-59-105T>G
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000410012
  ensembl transcript: ENST00000440225
  gene symbol: TAF6
  hgvsc: ENST00000440225.1:c.-59-105T>G
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000407980
  ensembl transcript: ENST00000418432
  gene symbol: TAF6
  hgvsc: ENST00000418432.2:c.-230-105T>G
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000389575
  ensembl transcript: ENST00000453269
  gene symbol: TAF6
  hgvsc: ENST00000453269.2:c.-59-105T>G
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000428071
  ensembl transcript: ENST00000520135
  gene symbol: TAF6
  hgvsc: ENST00000520135.1:c.-59-105T>G
  variant of: http://identifiers.org/hgnc/11540
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12149
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ile3Arg
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
population: Other
reference allele: A
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum

7-99712009-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99712009
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99712009
    reference: chr 7
allele count: 3
allele frequency: 2.320544554455445e-4
allele num: 12928
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl transcript: ENST00000497233
  gene symbol: TAF6
  hgvsc: ENST00000497233.1:n.418-118G>A
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000395627
  ensembl transcript: ENST00000431404
  gene symbol: TAF6
  hgvsc: ENST00000431404.2:c.-59-118G>A
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000406315
  ensembl transcript: ENST00000451699
  gene symbol: TAF6
  hgvsc: ENST00000451699.1:c.-59-118G>A
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000416396
  ensembl transcript: ENST00000452041
  gene symbol: TAF6
  hgvsc: ENST00000452041.1:c.-59-118G>A
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000413614
  ensembl transcript: ENST00000421980
  gene symbol: TAF6
  hgvsc: ENST00000421980.1:c.-59-118G>A
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl transcript: ENST00000487288
  gene symbol: TAF6
  hgvsc: ENST00000487288.1:n.98-118G>A
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000407980
  ensembl transcript: ENST00000418432
  gene symbol: TAF6
  hgvsc: ENST00000418432.2:c.-230-118G>A
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000399982
  ensembl transcript: ENST00000437822
  gene symbol: TAF6
  hgvsc: ENST00000437822.2:c.53-118G>A
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000412346
  ensembl transcript: ENST00000452438
  gene symbol: TAF6
  hgvsc: ENST00000452438.2:c.-59-118G>A
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000428639
  ensembl transcript: ENST00000523306
  gene symbol: TAF6
  hgvsc: ENST00000523306.1:c.-59-118G>A
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000410012
  ensembl transcript: ENST00000440225
  gene symbol: TAF6
  hgvsc: ENST00000440225.1:c.-59-118G>A
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000344537
  ensembl transcript: ENST00000344095
  gene symbol: TAF6
  hgvsc: ENST00000344095.4:c.-59-118G>A
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000389575
  ensembl transcript: ENST00000453269
  gene symbol: TAF6
  hgvsc: ENST00000453269.2:c.-59-118G>A
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000390220
  ensembl transcript: ENST00000417349
  gene symbol: TAF6
  hgvsc: ENST00000417349.1:c.-59-118G>A
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000419760
  ensembl transcript: ENST00000472509
  gene symbol: TAF6
  hgvsc: ENST00000472509.1:c.-6G>A
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000428071
  ensembl transcript: ENST00000520135
  gene symbol: TAF6
  hgvsc: ENST00000520135.1:c.-59-118G>A
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000427710
  ensembl transcript: ENST00000460673
  gene symbol: TAF6
  hgvsc: ENST00000460673.2:c.-59-118G>A
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000419555
  ensembl transcript: ENST00000493322
  gene symbol: TAF6
  hgvsc: ENST00000493322.1:c.-22-155G>A
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000390073
  ensembl transcript: ENST00000449571
  gene symbol: TAF6
  hgvsc: ENST00000449571.1:c.-59-118G>A
  variant of: http://identifiers.org/hgnc/11540
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: QD
site quality: ReadPosRankSum

7-99712028-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99712028
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99712028
    reference: chr 7
allele count: 0
allele frequency: 0.0e0
allele num: 9044
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000390220
  ensembl transcript: ENST00000417349
  gene symbol: TAF6
  hgvsc: ENST00000417349.1:c.-59-137C>G
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000412346
  ensembl transcript: ENST00000452438
  gene symbol: TAF6
  hgvsc: ENST00000452438.2:c.-59-137C>G
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000407980
  ensembl transcript: ENST00000418432
  gene symbol: TAF6
  hgvsc: ENST00000418432.2:c.-230-137C>G
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000416396
  ensembl transcript: ENST00000452041
  gene symbol: TAF6
  hgvsc: ENST00000452041.1:c.-59-137C>G
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000395627
  ensembl transcript: ENST00000431404
  gene symbol: TAF6
  hgvsc: ENST00000431404.2:c.-59-137C>G
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000419555
  ensembl transcript: ENST00000493322
  gene symbol: TAF6
  hgvsc: ENST00000493322.1:c.-22-174C>G
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000419760
  ensembl transcript: ENST00000472509
  gene symbol: TAF6
  hgvsc: ENST00000472509.1:c.-25C>G
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000344537
  ensembl transcript: ENST00000344095
  gene symbol: TAF6
  hgvsc: ENST00000344095.4:c.-59-137C>G
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000427710
  ensembl transcript: ENST00000460673
  gene symbol: TAF6
  hgvsc: ENST00000460673.2:c.-59-137C>G
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000413614
  ensembl transcript: ENST00000421980
  gene symbol: TAF6
  hgvsc: ENST00000421980.1:c.-59-137C>G
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000399982
  ensembl transcript: ENST00000437822
  gene symbol: TAF6
  hgvsc: ENST00000437822.2:c.53-137C>G
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000390073
  ensembl transcript: ENST00000449571
  gene symbol: TAF6
  hgvsc: ENST00000449571.1:c.-59-137C>G
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000428639
  ensembl transcript: ENST00000523306
  gene symbol: TAF6
  hgvsc: ENST00000523306.1:c.-59-137C>G
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000389575
  ensembl transcript: ENST00000453269
  gene symbol: TAF6
  hgvsc: ENST00000453269.2:c.-59-137C>G
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl transcript: ENST00000487288
  gene symbol: TAF6
  hgvsc: ENST00000487288.1:n.98-137C>G
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000410012
  ensembl transcript: ENST00000440225
  gene symbol: TAF6
  hgvsc: ENST00000440225.1:c.-59-137C>G
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl transcript: ENST00000497233
  gene symbol: TAF6
  hgvsc: ENST00000497233.1:n.418-137C>G
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000428071
  ensembl transcript: ENST00000520135
  gene symbol: TAF6
  hgvsc: ENST00000520135.1:c.-59-137C>G
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000406315
  ensembl transcript: ENST00000451699
  gene symbol: TAF6
  hgvsc: ENST00000451699.1:c.-59-137C>G
  variant of: http://identifiers.org/hgnc/11540
canonical: false
consequence: 5' UTR
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 3391
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30643
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Other
population: Latino
reference allele: G
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum

7-99717269-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99717269
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99717269
    reference: chr 7
allele count: 1
allele frequency: 8.396869646995599e-6
allele num: 119092
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242798
  ensembl transcript: ENST00000494221
  gene symbol: RP11-506M12.1
  hgvsc: ENST00000494221.1:n.134-3994C>T
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166997
  ensembl protein: ENSP00000262932
  ensembl transcript: ENST00000262932
  gene symbol: CNPY4
  hgvsc: ENST00000262932.3:c.-99G>A
  variant of: http://identifiers.org/hgnc/28631
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000399982
  ensembl transcript: ENST00000437822
  gene symbol: TAF6
  hgvsc: ENST00000437822.2:c.52+49C>T
  variant of: http://identifiers.org/hgnc/11540
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 947
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15917
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8416
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1879
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 783
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6982
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3739
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18765
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 772
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 208
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 936
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 508
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1154
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2472
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3137
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26437
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1139
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3548
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1521
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2223
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1634
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2265
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3914
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 7533
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1321
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 551
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Other
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
reference allele: G
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD

7-99717276-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99717276
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99717276
    reference: chr 7
allele count: 3
allele frequency: 2.516862981979261e-5
allele num: 119196
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242798
  ensembl transcript: ENST00000494221
  gene symbol: RP11-506M12.1
  hgvsc: ENST00000494221.1:n.134-4001C>T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000399982
  ensembl transcript: ENST00000437822
  gene symbol: TAF6
  hgvsc: ENST00000437822.2:c.52+42C>T
  variant of: http://identifiers.org/hgnc/11540
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166997
  ensembl protein: ENSP00000262932
  ensembl transcript: ENST00000262932
  gene symbol: CNPY4
  hgvsc: ENST00000262932.3:c.-92G>A
  variant of: http://identifiers.org/hgnc/28631
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 769
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7037
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5134
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1877
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19202
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3605
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 782
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 943
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18870
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2138
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1245
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2080
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1327
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7412
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 396
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2262
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1558
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31442
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2289
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 539
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 886
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1326
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1170
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 482
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3905
  bin: 9.75e1
  variant carriers: 3
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
population: African
reference allele: G
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: QD

7-99717281-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99717281
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99717281
    reference: chr 7
allele count: 3
allele frequency: 2.515765463571716e-5
allele num: 119248
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242798
  ensembl transcript: ENST00000494221
  gene symbol: RP11-506M12.1
  hgvsc: ENST00000494221.1:n.134-4006G>C
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166997
  ensembl protein: ENSP00000262932
  ensembl transcript: ENST00000262932
  gene symbol: CNPY4
  hgvsc: ENST00000262932.3:c.-87C>G
  variant of: http://identifiers.org/hgnc/28631
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106290
  ensembl protein: ENSP00000399982
  ensembl transcript: ENST00000437822
  gene symbol: TAF6
  hgvsc: ENST00000437822.2:c.52+37G>C
  variant of: http://identifiers.org/hgnc/11540
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 927
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7176
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1882
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3228
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19861
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3498
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20115
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 782
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 772
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1114
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1147
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1800
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 602
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7352
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2107
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1452
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1553
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1175
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2223
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3902
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 531
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 826
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1081
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 481
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33149
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: East Asian
population: South Asian
population: African
reference allele: C
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: QD

GenotypeDepth
all individuals: 86
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 542
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 39
bin: 7.75e1
variant carriers: 1

GenotypeDepth
all individuals: 30
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 6
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 26
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 43
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 31162
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 8906
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 30
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 199
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 14
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 281
bin: 4.75e1
variant carriers: 1

GenotypeDepth
all individuals: 107
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 491
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 163
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9023
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1245
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 47434
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 139
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1557
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 550
bin: 9.75e1
variant carriers: 2

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66730
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.211240310077519e-4
allele num: 16512
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
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InbreedingCoeff
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QD
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VQSLOD
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FS
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BaseQRankSum
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MQRankSum
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DP
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MQ
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ReadPosRankSum
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ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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Latino
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African
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European (Non-Finnish)
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European (Finnish)
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South Asian
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InbreedingCoeff
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MQRankSum
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BaseQRankSum
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MQ
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FS
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ReadPosRankSum
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DP
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QD
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VQSLOD
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ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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Latino
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East Asian
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European (Finnish)
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African
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Other
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European (Non-Finnish)
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DP
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InbreedingCoeff
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ReadPosRankSum
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MQ
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MQRankSum
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BaseQRankSum
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FS
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QD
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ClippingRankSum
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VQSLOD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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European (Finnish)
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Latino
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Other
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South Asian
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European (Non-Finnish)
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ClippingRankSum
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InbreedingCoeff
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MQ
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QD
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DP
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VQSLOD
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FS
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BaseQRankSum
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ReadPosRankSum
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MQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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African
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European (Finnish)
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European (Non-Finnish)
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East Asian
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Other
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MQ
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FS
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DP
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MQRankSum
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BaseQRankSum
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InbreedingCoeff
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ClippingRankSum
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QD
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VQSLOD
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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Latino
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South Asian
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Other
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European (Non-Finnish)
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East Asian
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African
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European (Finnish)
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QD
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VQSLOD
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MQ
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ReadPosRankSum
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BaseQRankSum
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FS
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InbreedingCoeff
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DP
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MQRankSum
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ClippingRankSum
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GenotypeQuality
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European (Non-Finnish)
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African
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East Asian
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FS
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InbreedingCoeff
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DP
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MQRankSum
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VQSLOD
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ClippingRankSum
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MQ
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GenotypeQuality
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African
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East Asian
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MQRankSum
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VQSLOD
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QD
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DP
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MQ
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FS
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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South Asian
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African
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European (Finnish)
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Other
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European (Non-Finnish)
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VQSLOD
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BaseQRankSum
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InbreedingCoeff
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QD
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FS
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DP
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MQ
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MQRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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African
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Latino
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South Asian
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East Asian
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European (Finnish)
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MQ
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FS
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MQRankSum
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DP
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ReadPosRankSum
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VQSLOD
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European (Finnish)
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East Asian
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African
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South Asian
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MQ
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African
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MQ
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ClippingRankSum
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FS
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InbreedingCoeff
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VQSLOD
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BaseQRankSum
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DP
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QD
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MQRankSum
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ReadPosRankSum
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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South Asian
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African
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European (Finnish)
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Latino
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East Asian
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MQ
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DP
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FS
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VQSLOD
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ClippingRankSum
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BaseQRankSum
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ReadPosRankSum
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MQRankSum
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InbreedingCoeff
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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Other
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South Asian
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allele num: 16512
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQ
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FS
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BaseQRankSum
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ClippingRankSum
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ReadPosRankSum
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MQRankSum
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QD
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VQSLOD
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InbreedingCoeff
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SIO_000300: 1.0e-4

DP
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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African
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South Asian
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European (Non-Finnish)
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East Asian
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Other
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FS
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MQRankSum
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MQ
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ClippingRankSum
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InbreedingCoeff
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VQSLOD
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QD
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BaseQRankSum
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ReadPosRankSum
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DP
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variant carriers: 8

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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East Asian
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European (Finnish)
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Other
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Latino
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European (Non-Finnish)
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South Asian
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FS
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BaseQRankSum
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DP
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InbreedingCoeff
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ReadPosRankSum
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MQRankSum
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MQ
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ClippingRankSum
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VQSLOD
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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South Asian
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European (Non-Finnish)
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Other
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European (Finnish)
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African
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East Asian
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DP
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BaseQRankSum
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QD
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ClippingRankSum
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FS
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InbreedingCoeff
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ReadPosRankSum
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MQRankSum
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MQ
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VQSLOD
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SIO_000300: -2.761e-1

GenotypeDepth
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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bin: 8.25e1
variant carriers: 0

GenotypeDepth
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bin: 5.25e1
variant carriers: 1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
all individuals: 25
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 138
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variant carriers: 0

GenotypeQuality
all individuals: 338
bin: 9.75e1
variant carriers: 2

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.31107002542177e-4
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66720
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10396
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.66e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.785e0

FS
type: SiteQuality
SIO_000300: 2.823e0

MQRankSum
type: SiteQuality
SIO_000300: 4.61e-1

DP
type: SiteQuality
SIO_000300: 1.734476e6

ClippingRankSum
type: SiteQuality
SIO_000300: 8.56e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.5e-2

VQSLOD
type: SiteQuality
SIO_000300: 8.46e-1

QD
type: SiteQuality
SIO_000300: 1.116e1

GenotypeDepth
all individuals: 10
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variant carriers: 0

GenotypeDepth
all individuals: 510
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variant carriers: 0

GenotypeDepth
all individuals: 36
bin: 1.25e1
variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
all individuals: 18
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variant carriers: 0

GenotypeDepth
all individuals: 74
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variant carriers: 0

GenotypeQuality
all individuals: 5
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variant carriers: 0

GenotypeQuality
all individuals: 8
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 17
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10394
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498890820792613e-5
allele num: 66716
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.07e-2

DP
type: SiteQuality
SIO_000300: 1.734368e6

MQ
type: SiteQuality
SIO_000300: 5.886e1

FS
type: SiteQuality
SIO_000300: 8.407e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.056e0

MQRankSum
type: SiteQuality
SIO_000300: 1.57e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.647e0

VQSLOD
type: SiteQuality
SIO_000300: -1.202e0

QD
type: SiteQuality
SIO_000300: 1.209e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.18e0

GenotypeDepth
all individuals: 54
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variant carriers: 0

GenotypeDepth
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variant carriers: 5

GenotypeDepth
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variant carriers: 3

GenotypeDepth
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variant carriers: 5

GenotypeDepth
all individuals: 30
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variant carriers: 0

GenotypeDepth
all individuals: 20
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variant carriers: 4

GenotypeDepth
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variant carriers: 2

GenotypeDepth
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variant carriers: 2

GenotypeDepth
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variant carriers: 3

GenotypeDepth
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variant carriers: 2

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 4

GenotypeDepth
all individuals: 28
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variant carriers: 4

GenotypeDepth
all individuals: 22
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variant carriers: 2

GenotypeDepth
all individuals: 68
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variant carriers: 6

GenotypeDepth
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variant carriers: 3

GenotypeQuality
all individuals: 132
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 46

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 20
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variant carriers: 0

Latino
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allele count: 4
allele frequency: 3.456619426201175e-4
allele num: 11572
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66676
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

African
type: Population
allele count: 42
allele frequency: 4.064253919101994e-3
allele num: 10334
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 5.97e0

DP
type: SiteQuality
SIO_000300: 1.734221e6

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.58e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

QD
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SIO_000300: 1.462e1

MQRankSum
type: SiteQuality
SIO_000300: 5.1e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -3.53e-1

MQ
type: SiteQuality
SIO_000300: 5.97e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.98e-1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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variant carriers: 1

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 65
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 3

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 21
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variant carriers: 0

GenotypeQuality
all individuals: 70
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10258
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.000210014701029e-5
allele num: 66662
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.106194690265487e-3
allele num: 904
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.66e-1

MQRankSum
type: SiteQuality
SIO_000300: -8.2e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

DP
type: SiteQuality
SIO_000300: 1.731672e6

MQ
type: SiteQuality
SIO_000300: 5.979e1

FS
type: SiteQuality
SIO_000300: 8.058999999999999e0

VQSLOD
type: SiteQuality
SIO_000300: 2.69e-1

ClippingRankSum
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SIO_000300: -7.56e-1

QD
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SIO_000300: 1.142e1

BaseQRankSum
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SIO_000300: -2.496e0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2
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variant carriers: 0

GenotypeQuality
all individuals: 81
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.058403004967891e-5
allele num: 16506
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.000750187546887e-5
allele num: 66650
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10252
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.398e0

ReadPosRankSum
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SIO_000300: 1.28e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.58e1

MQRankSum
type: SiteQuality
SIO_000300: 3.35e-1

VQSLOD
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SIO_000300: 2.5e-1

FS
type: SiteQuality
SIO_000300: 7.259e0

BaseQRankSum
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SIO_000300: -3.123e0

DP
type: SiteQuality
SIO_000300: 1.731067e6

GenotypeDepth
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variant carriers: 48

GenotypeDepth
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variant carriers: 13

GenotypeDepth
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variant carriers: 35

GenotypeDepth
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variant carriers: 84

GenotypeDepth
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variant carriers: 71

GenotypeDepth
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variant carriers: 57

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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variant carriers: 63

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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Latino
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South Asian
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African
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allele frequency: 8.163858221963974e-2
allele num: 10326
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European (Finnish)
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 1.200984807542185e-4
allele num: 66612
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ReadPosRankSum
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DP
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InbreedingCoeff
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BaseQRankSum
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VQSLOD
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FS
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QD
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ClippingRankSum
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MQRankSum
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MQ
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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East Asian
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European (Non-Finnish)
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African
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Latino
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European (Finnish)
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MQ
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BaseQRankSum
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FS
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MQRankSum
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InbreedingCoeff
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VQSLOD
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ReadPosRankSum
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QD
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ClippingRankSum
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 2
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Other
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East Asian
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allele count: 0
allele frequency: 0.0e0
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Latino
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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VQSLOD
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BaseQRankSum
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QD
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MQRankSum
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ReadPosRankSum
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MQ
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FS
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InbreedingCoeff
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ClippingRankSum
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DP
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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European (Finnish)
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South Asian
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African
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East Asian
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Other
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European (Non-Finnish)
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BaseQRankSum
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ReadPosRankSum
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MQ
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VQSLOD
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InbreedingCoeff
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FS
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ClippingRankSum
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MQRankSum
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DP
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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European (Non-Finnish)
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South Asian
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African
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European (Finnish)
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Latino
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East Asian
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ReadPosRankSum
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VQSLOD
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MQ
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BaseQRankSum
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FS
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QD
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MQRankSum
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ClippingRankSum
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InbreedingCoeff
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11550
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.503081316699233e-5
allele num: 66530
num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

FS
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MQRankSum
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MQ
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BaseQRankSum
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DP
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ClippingRankSum
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SIO_000300: -4.76e-1

QD
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VQSLOD
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InbreedingCoeff
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SIO_000300: 1.0e-3

ReadPosRankSum
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SIO_000300: 3.48e-1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 1

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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variant carriers: 1

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10300
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

East Asian
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allele count: 1
allele frequency: 1.156871818602499e-4
allele num: 8644
num of homozygotes: 0

Latino
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allele count: 6
allele frequency: 5.193905817174516e-4
allele num: 11552
num of homozygotes: 0

European (Non-Finnish)
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allele count: 5
allele frequency: 7.518570870049021e-5
allele num: 66502
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 6.063545961678389e-5
allele num: 16492
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BaseQRankSum
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VQSLOD
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MQRankSum
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SIO_000300: -8.699999999999999e-2

InbreedingCoeff
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DP
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FS
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ReadPosRankSum
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MQ
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SIO_000300: 5.968e1

QD
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SIO_000300: 1.431e1

ClippingRankSum
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SIO_000300: -3.02e-1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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variant carriers: 1

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16458
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10258
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.505751972535084e-5
allele num: 66412
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.539e0

ClippingRankSum
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SIO_000300: -7.13e-1

BaseQRankSum
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SIO_000300: 3.67e0

InbreedingCoeff
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SIO_000300: 1.8e-3

DP
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MQ
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VQSLOD
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MQRankSum
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SIO_000300: 1.08e0

QD
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SIO_000300: 1.327e1

ReadPosRankSum
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SIO_000300: 1.39e0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.510254628930438e-5
allele num: 66214
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16404
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
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ReadPosRankSum
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VQSLOD
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QD
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FS
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DP
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MQRankSum
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BaseQRankSum
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ClippingRankSum
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.515151515151515e-5
allele num: 66000
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 8
allele frequency: 9.321836401771149e-4
allele num: 8582
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6586
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VQSLOD
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BaseQRankSum
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FS
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InbreedingCoeff
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ClippingRankSum
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MQRankSum
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ReadPosRankSum
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DP
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MQ
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11412
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 2.448579823702253e-4
allele num: 16336
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6584
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.168497312456181e-4
allele num: 8558
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10060
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 65846
num of homozygotes: 0

Other
type: Population
allele count: 0
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MQRankSum
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MQ
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InbreedingCoeff
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FS
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DP
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ClippingRankSum
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BaseQRankSum
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VQSLOD
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QD
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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European (Finnish)
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Other
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African
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South Asian
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East Asian
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VQSLOD
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DP
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MQRankSum
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QD
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ReadPosRankSum
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BaseQRankSum
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InbreedingCoeff
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FS
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ClippingRankSum
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MQ
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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Other
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African
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European (Non-Finnish)
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South Asian
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Latino
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ReadPosRankSum
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FS
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ClippingRankSum
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QD
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MQ
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InbreedingCoeff
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BaseQRankSum
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DP
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VQSLOD
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MQRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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African
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European (Non-Finnish)
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East Asian
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South Asian
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Latino
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ClippingRankSum
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InbreedingCoeff
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DP
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MQ
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FS
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QD
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ReadPosRankSum
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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European (Finnish)
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European (Non-Finnish)
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East Asian
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South Asian
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FS
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BaseQRankSum
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QD
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VQSLOD
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ReadPosRankSum
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MQRankSum
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MQ
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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African
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European (Finnish)
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South Asian
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Other
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European (Non-Finnish)
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DP
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BaseQRankSum
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MQRankSum
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InbreedingCoeff
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MQ
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FS
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ReadPosRankSum
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VQSLOD
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QD
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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East Asian
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African
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European (Non-Finnish)
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FS
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VQSLOD
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QD
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MQRankSum
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MQ
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DP
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BaseQRankSum
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ClippingRankSum
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InbreedingCoeff
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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East Asian
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African
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Latino
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European (Finnish)
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European (Non-Finnish)
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BaseQRankSum
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FS
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DP
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MQ
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InbreedingCoeff
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VQSLOD
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ClippingRankSum
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MQRankSum
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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East Asian
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African
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South Asian
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Other
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European (Non-Finnish)
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ClippingRankSum
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ReadPosRankSum
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DP
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FS
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VQSLOD
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BaseQRankSum
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MQ
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InbreedingCoeff
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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South Asian
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European (Non-Finnish)
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Latino
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European (Finnish)
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Other
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VQSLOD
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InbreedingCoeff
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DP
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MQ
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FS
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QD
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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East Asian
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European (Non-Finnish)
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South Asian
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European (Finnish)
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Latino
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FS
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VQSLOD
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ReadPosRankSum
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DP
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4634
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5162
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 678
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13094
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6738
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.339071856287425e-5
allele num: 42752
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6508
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.89e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.8e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.18e0

DP
type: SiteQuality
SIO_000300: 9.0037e5

QD
type: SiteQuality
SIO_000300: 1.002e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.399999999999999e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.43e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.17e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 387
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variant carriers: 0

Latino
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allele count: 2
allele frequency: 3.206155819172812e-4
allele num: 6238
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 12954
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 4996
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4502
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 41350
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 6524
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.04e-2

DP
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SIO_000300: 8.7003e5

QD
type: SiteQuality
SIO_000300: 1.176e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
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SIO_000300: 1.24e-1

MQRankSum
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SIO_000300: -4.62e-1

MQ
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SIO_000300: 6.0e1

VQSLOD
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SIO_000300: 7.77e-1

BaseQRankSum
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SIO_000300: -1.846e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.69e-1

GenotypeDepth
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bin: 9.25e1
variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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variant carriers: 1

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 2

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4064
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4982
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12094
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 5.63570784490532e-5
allele num: 35488
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3834
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5688
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 548
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.681e0

MQRankSum
type: SiteQuality
SIO_000300: -3.23e-1

MQ
type: SiteQuality
SIO_000300: 5.943e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.29e-2

QD
type: SiteQuality
SIO_000300: 1.133e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.999999999999999e-3

FS
type: SiteQuality
SIO_000300: 4.702e0

VQSLOD
type: SiteQuality
SIO_000300: 6.26e-1

DP
type: SiteQuality
SIO_000300: 7.65753e5

ClippingRankSum
type: SiteQuality
SIO_000300: -4.71e-1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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variant carriers: 4

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 4

GenotypeQuality
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GenotypeQuality
all individuals: 9766
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 5590
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4862
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 544
num of homozygotes: 0

East Asian
type: Population
allele count: 5
allele frequency: 1.26008064516129e-3
allele num: 3968
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12030
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3774
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 34846
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.21e-1

MQRankSum
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SIO_000300: 2.2e-1

InbreedingCoeff
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SIO_000300: -1.55e-2

ReadPosRankSum
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SIO_000300: 2.96e-1

QD
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SIO_000300: 8.26e0

FS
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SIO_000300: 0.0e0

DP
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SIO_000300: 7.57095e5

MQ
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SIO_000300: 6.0e1

VQSLOD
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SIO_000300: 2.42e0

BaseQRankSum
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SIO_000300: -1.214e0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 1

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 10
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3318
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3818
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 4852
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 30386
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 8.815232722143864e-5
allele num: 11344
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 3288
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 492
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DP
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SIO_000300: 6.97249e5

MQ
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VQSLOD
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SIO_000300: -7.85e-2

FS
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QD
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BaseQRankSum
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InbreedingCoeff
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SIO_000300: -2.09e-2

MQRankSum
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ReadPosRankSum
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ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 226
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GenotypeQuality
all individuals: 14
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variant carriers: 0

African
type: Population
allele count: 21
allele frequency: 4.510309278350515e-3
allele num: 4656
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 3108
num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 2.844141069397042e-4
allele num: 3516
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 11074
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 28810
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 468
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.12e-1

MQ
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SIO_000300: 6.0e1

InbreedingCoeff
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SIO_000300: -2.26e-2

DP
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SIO_000300: 6.73332e5

ClippingRankSum
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SIO_000300: -2.69e-1

FS
type: SiteQuality
SIO_000300: 1.657e0

VQSLOD
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SIO_000300: 3.5e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.53e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.23e-1

QD
type: SiteQuality
SIO_000300: 1.449e1

GenotypeDepth
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bin: 1.25e1
variant carriers: 24

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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variant carriers: 2

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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variant carriers: 8

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 38

African
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allele count: 0
allele frequency: 0.0e0
allele num: 3302
num of homozygotes: 0

Latino
type: Population
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allele frequency: 5.02008032128514e-4
allele num: 1992
num of homozygotes: 0

Other
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 1934
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European (Finnish)
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allele count: 19
allele frequency: 9.21435499515034e-3
allele num: 2062
num of homozygotes: 0

European (Non-Finnish)
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allele count: 15
allele frequency: 7.667143733387855e-4
allele num: 19564
num of homozygotes: 0

South Asian
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allele frequency: 1.011326860841424e-4
allele num: 9888
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MQRankSum
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SIO_000300: -2.04e-1

DP
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SIO_000300: 5.6127e5

InbreedingCoeff
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SIO_000300: -3.83e-2

MQ
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ReadPosRankSum
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SIO_000300: 1.01e-1

ClippingRankSum
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SIO_000300: 1.32e-1

FS
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SIO_000300: 0.0e0

VQSLOD
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SIO_000300: 2.6e0

QD
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SIO_000300: 1.303e1

BaseQRankSum
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SIO_000300: -2.219e0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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variant carriers: 1

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 7

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.070893124866138e-4
allele num: 9338
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 308
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 6.325110689437066e-5
allele num: 15810
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 6.868131868131869e-4
allele num: 1456
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 1.058574453069866e-3
allele num: 2834
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1608
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.642e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.26e-1

InbreedingCoeff
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SIO_000300: 3.56e-2

BaseQRankSum
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SIO_000300: -1.668e0

VQSLOD
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SIO_000300: 1.14e0

QD
type: SiteQuality
SIO_000300: 1.356e1

MQRankSum
type: SiteQuality
SIO_000300: 7.05e-1

DP
type: SiteQuality
SIO_000300: 5.1554e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.88e-1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 1

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 5928
bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 6.325110689437066e-5
allele num: 15810
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2834
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1456
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 1608
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 308
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1480
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

VQSLOD
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QD
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FS
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InbreedingCoeff
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MQ
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DP
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MQRankSum
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ReadPosRankSum
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ClippingRankSum
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BaseQRankSum
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 6.490977541217708e-5
allele num: 15406
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2774
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9274
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 302
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1400
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1558
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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QD
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SIO_000300: 1.37e1

ReadPosRankSum
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MQRankSum
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InbreedingCoeff
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VQSLOD
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DP
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FS
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ClippingRankSum
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MQ
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BaseQRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 284
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South Asian
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num of homozygotes: 0

East Asian
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African
type: Population
allele count: 1
allele frequency: 3.810975609756098e-4
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European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1250
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QD
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FS
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MQRankSum
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VQSLOD
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ClippingRankSum
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InbreedingCoeff
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MQ
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BaseQRankSum
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DP
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ReadPosRankSum
type: SiteQuality
SIO_000300: 9.2e-1

GenotypeDepth
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bin: 2.25e1
variant carriers: 0

GenotypeDepth
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bin: 1.25e1
variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 1

GenotypeDepth
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bin: 2.75e1
variant carriers: 1

GenotypeDepth
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bin: 3.25e1
variant carriers: 1

GenotypeDepth
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bin: 1.75e1
variant carriers: 0

GenotypeDepth
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bin: 4.25e1
variant carriers: 2

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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bin: 3.75e1
variant carriers: 3

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 1

GenotypeDepth
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variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 9

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 212
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9416
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 744
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 744
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1874
num of homozygotes: 0

South Asian
type: Population
allele count: 8
allele frequency: 9.970089730807576e-4
allele num: 8024
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 706
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.78e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.22e0

MQRankSum
type: SiteQuality
SIO_000300: -1.31e-1

QD
type: SiteQuality
SIO_000300: 1.12e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.22e-2

DP
type: SiteQuality
SIO_000300: 4.093e5

VQSLOD
type: SiteQuality
SIO_000300: 1.11e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.952e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.58e-1

GenotypeDepth
all individuals: 30157
bin: 2.5e0
variant carriers: 1

GenotypeDepth
all individuals: 88
bin: 3.75e1
variant carriers: 0

GenotypeDepth
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bin: 7.25e1
variant carriers: 0

GenotypeDepth
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bin: 2.75e1
variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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bin: 3.25e1
variant carriers: 1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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bin: 7.5e0
variant carriers: 4

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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bin: 1.75e1
variant carriers: 2

GenotypeDepth
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variant carriers: 2

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 1

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 8

GenotypeQuality
all individuals: 42
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variant carriers: 1

GenotypeQuality
all individuals: 60
bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 672
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 210
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1810
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7950
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 712
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 688
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 7.682177348551361e-4
allele num: 9112
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.646e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.449e0

MQRankSum
type: SiteQuality
SIO_000300: 1.93e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.34e-2

DP
type: SiteQuality
SIO_000300: 4.02093e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.267e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.86e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.3e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.02e0

GenotypeDepth
all individuals: 0
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 6
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
all individuals: 495
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variant carriers: 1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 1

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeQuality
all individuals: 84
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 2

GenotypeQuality
all individuals: 3789
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variant carriers: 0

GenotypeQuality
all individuals: 8
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1504
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7600
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 592
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 2.743484224965707e-4
allele num: 7290
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 426
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 544
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 186
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.591e0

MQRankSum
type: SiteQuality
SIO_000300: 5.29e-1

DP
type: SiteQuality
SIO_000300: 3.50572e5

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.53e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.859999999999999e-2

QD
type: SiteQuality
SIO_000300: 8.51e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.44e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.9e0

GenotypeDepth
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variant carriers: 1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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variant carriers: 8

GenotypeDepth
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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variant carriers: 29

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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variant carriers: 5

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 6

GenotypeQuality
all individuals: 32315
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GenotypeQuality
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GenotypeQuality
all individuals: 50
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variant carriers: 2

GenotypeQuality
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variant carriers: 2

GenotypeQuality
all individuals: 191
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 2

GenotypeQuality
all individuals: 18
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variant carriers: 1

GenotypeQuality
all individuals: 10
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variant carriers: 5

GenotypeQuality
all individuals: 62
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variant carriers: 0

GenotypeQuality
all individuals: 40
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variant carriers: 1

GenotypeQuality
all individuals: 906
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variant carriers: 3

GenotypeQuality
all individuals: 1901
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variant carriers: 1

GenotypeQuality
all individuals: 10
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variant carriers: 2

GenotypeQuality
all individuals: 31
bin: 9.75e1
variant carriers: 8

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 988
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 426
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5848
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 368
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 150
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 6.026516673362796e-4
allele num: 4978
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 170
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.63e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.99e-2

MQRankSum
type: SiteQuality
SIO_000300: 3.22e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.38e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.98e-1

FS
type: SiteQuality
SIO_000300: 1.507e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 2.5779e5

QD
type: SiteQuality
SIO_000300: 1.341e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.06e-1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 572
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 76
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variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 5.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4230
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 288
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 50
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3396
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 728
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 98
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 254
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.80755e5

BaseQRankSum
type: SiteQuality
SIO_000300: 1.92e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -1.99e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.22e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.85e-2

MQRankSum
type: SiteQuality
SIO_000300: -6.840000000000001e-1

QD
type: SiteQuality
SIO_000300: 1.431e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.840000000000001e-1

South Asian
type: Population
allele count: 1
allele frequency: 6.103515625e-5
allele num: 16384
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6552
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11312
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65490
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8214
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.413e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.218e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.3e-2

DP
type: SiteQuality
SIO_000300: 1.627811e6

VQSLOD
type: SiteQuality
SIO_000300: 3.3e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.1e-2

MQRankSum
type: SiteQuality
SIO_000300: 9.44e-1

QD
type: SiteQuality
SIO_000300: 1.524e1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16382
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6562
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11318
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8224
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.5761005521828e-5
allele num: 65558
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10256
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 9.330000000000001e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.096e0

VQSLOD
type: SiteQuality
SIO_000300: 7.3e-1

DP
type: SiteQuality
SIO_000300: 1.64486e6

ClippingRankSum
type: SiteQuality
SIO_000300: -8.25e-1

FS
type: SiteQuality
SIO_000300: 4.261e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.29e-1

QD
type: SiteQuality
SIO_000300: 1.12e1

Latino
type: Population
allele count: 3
allele frequency: 2.650176678445229e-4
allele num: 11320
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65586
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6558
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8232
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16386
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10270
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 7.688e0

MQRankSum
type: SiteQuality
SIO_000300: -6.26e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.095e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 1.41e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.12e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

DP
type: SiteQuality
SIO_000300: 1.662129e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.09e0

QD
type: SiteQuality
SIO_000300: 1.501e1