3-141678725-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 141678725
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 141678725
    reference: chr 3
allele count: 6
allele frequency: 5.030349776987826e-5
allele num: 119276
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000420599
  ensembl transcript: ENST00000486111
  gene symbol: TFDP2
  hgvsc: ENST00000486111.1:c.705-43C>T
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000381078
  ensembl transcript: ENST00000397991
  gene symbol: TFDP2
  hgvsc: ENST00000397991.4:c.801-43C>T
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417384
  ensembl transcript: ENST00000487734
  gene symbol: TFDP2
  hgvsc: ENST00000487734.1:c.*775-43C>T
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417726
  ensembl transcript: ENST00000467667
  gene symbol: TFDP2
  hgvsc: ENST00000467667.1:c.705-43C>T
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000419036
  ensembl transcript: ENST00000495310
  gene symbol: TFDP2
  hgvsc: ENST00000495310.1:c.594-43C>T
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000418590
  ensembl transcript: ENST00000467072
  gene symbol: TFDP2
  hgvsc: ENST00000467072.1:c.705-43C>T
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417585
  ensembl transcript: ENST00000479040
  gene symbol: TFDP2
  hgvsc: ENST00000479040.1:c.702-43C>T
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000315668
  ensembl transcript: ENST00000317104
  gene symbol: TFDP2
  hgvsc: ENST00000317104.7:c.657-43C>T
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000439782
  ensembl transcript: ENST00000499676
  gene symbol: TFDP2
  hgvsc: ENST00000499676.2:c.705-43C>T
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000419507
  ensembl transcript: ENST00000474279
  gene symbol: TFDP2
  hgvsc: ENST00000474279.1:c.25-43C>T
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000309622
  ensembl transcript: ENST00000310282
  gene symbol: TFDP2
  hgvsc: ENST00000310282.6:c.705-43C>T
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000418971
  ensembl transcript: ENST00000477292
  gene symbol: TFDP2
  hgvsc: ENST00000477292.1:c.477-43C>T
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000420616
  ensembl transcript: ENST00000489671
  gene symbol: TFDP2
  hgvsc: ENST00000489671.1:c.885-43C>T
  variant of: http://identifiers.org/hgnc/11751
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1102
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2672
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2980
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4766
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4099
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 589
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7081
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 594
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2883
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8137
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9385
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1756
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: South Asian
population: African
population: Other
reference allele: G
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum

3-141682607-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 141682607
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 141682607
    reference: chr 3
allele count: 1
allele frequency: 8.576476440419219e-6
allele num: 116598
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000418971
  ensembl transcript: ENST00000477292
  gene symbol: TFDP2
  hgvsc: ENST00000477292.1:c.476+47A>G
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000381078
  ensembl transcript: ENST00000397991
  gene symbol: TFDP2
  hgvsc: ENST00000397991.4:c.800+47A>G
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417726
  ensembl transcript: ENST00000467667
  gene symbol: TFDP2
  hgvsc: ENST00000467667.1:c.704+47A>G
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000418590
  ensembl transcript: ENST00000467072
  gene symbol: TFDP2
  hgvsc: ENST00000467072.1:c.704+47A>G
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000420599
  ensembl transcript: ENST00000486111
  gene symbol: TFDP2
  hgvsc: ENST00000486111.1:c.704+47A>G
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417384
  ensembl transcript: ENST00000487734
  gene symbol: TFDP2
  hgvsc: ENST00000487734.1:c.*774+47A>G
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000309622
  ensembl transcript: ENST00000310282
  gene symbol: TFDP2
  hgvsc: ENST00000310282.6:c.704+47A>G
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000439782
  ensembl transcript: ENST00000499676
  gene symbol: TFDP2
  hgvsc: ENST00000499676.2:c.704+47A>G
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000315668
  ensembl transcript: ENST00000317104
  gene symbol: TFDP2
  hgvsc: ENST00000317104.7:c.656+47A>G
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000419507
  ensembl transcript: ENST00000474279
  gene symbol: TFDP2
  hgvsc: ENST00000474279.1:c.24+47A>G
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000420616
  ensembl transcript: ENST00000489671
  gene symbol: TFDP2
  hgvsc: ENST00000489671.1:c.884+47A>G
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417585
  ensembl transcript: ENST00000479040
  gene symbol: TFDP2
  hgvsc: ENST00000479040.1:c.701+47A>G
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000419036
  ensembl transcript: ENST00000495310
  gene symbol: TFDP2
  hgvsc: ENST00000495310.1:c.593+47A>G
  variant of: http://identifiers.org/hgnc/11751
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4235
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1630
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3550
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 923
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2237
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4367
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3031
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4986
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3851
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 590
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2187
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1757
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4757
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5506
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2760
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1935
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Other
reference allele: T
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: ReadPosRankSum

3-141682608-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 141682608
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 141682608
    reference: chr 3
allele count: 1
allele frequency: 8.575593859874796e-6
allele num: 116610
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000419036
  ensembl transcript: ENST00000495310
  gene symbol: TFDP2
  hgvsc: ENST00000495310.1:c.593+46C>T
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417585
  ensembl transcript: ENST00000479040
  gene symbol: TFDP2
  hgvsc: ENST00000479040.1:c.701+46C>T
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000309622
  ensembl transcript: ENST00000310282
  gene symbol: TFDP2
  hgvsc: ENST00000310282.6:c.704+46C>T
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000418590
  ensembl transcript: ENST00000467072
  gene symbol: TFDP2
  hgvsc: ENST00000467072.1:c.704+46C>T
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417726
  ensembl transcript: ENST00000467667
  gene symbol: TFDP2
  hgvsc: ENST00000467667.1:c.704+46C>T
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000418971
  ensembl transcript: ENST00000477292
  gene symbol: TFDP2
  hgvsc: ENST00000477292.1:c.476+46C>T
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000420616
  ensembl transcript: ENST00000489671
  gene symbol: TFDP2
  hgvsc: ENST00000489671.1:c.884+46C>T
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000439782
  ensembl transcript: ENST00000499676
  gene symbol: TFDP2
  hgvsc: ENST00000499676.2:c.704+46C>T
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000419507
  ensembl transcript: ENST00000474279
  gene symbol: TFDP2
  hgvsc: ENST00000474279.1:c.24+46C>T
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417384
  ensembl transcript: ENST00000487734
  gene symbol: TFDP2
  hgvsc: ENST00000487734.1:c.*774+46C>T
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000315668
  ensembl transcript: ENST00000317104
  gene symbol: TFDP2
  hgvsc: ENST00000317104.7:c.656+46C>T
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000381078
  ensembl transcript: ENST00000397991
  gene symbol: TFDP2
  hgvsc: ENST00000397991.4:c.800+46C>T
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000420599
  ensembl transcript: ENST00000486111
  gene symbol: TFDP2
  hgvsc: ENST00000486111.1:c.704+46C>T
  variant of: http://identifiers.org/hgnc/11751
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1932
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4235
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2238
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2187
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3031
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5078
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1243
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1746
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5557
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 918
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2760
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1630
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4757
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4987
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5507
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: Other
reference allele: G
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: QD

3-141682610-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 141682610
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 141682610
    reference: chr 3
allele count: 1
allele frequency: 8.574123295892996e-6
allele num: 116630
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000439782
  ensembl transcript: ENST00000499676
  gene symbol: TFDP2
  hgvsc: ENST00000499676.2:c.704+44A>G
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417384
  ensembl transcript: ENST00000487734
  gene symbol: TFDP2
  hgvsc: ENST00000487734.1:c.*774+44A>G
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417585
  ensembl transcript: ENST00000479040
  gene symbol: TFDP2
  hgvsc: ENST00000479040.1:c.701+44A>G
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000315668
  ensembl transcript: ENST00000317104
  gene symbol: TFDP2
  hgvsc: ENST00000317104.7:c.656+44A>G
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417726
  ensembl transcript: ENST00000467667
  gene symbol: TFDP2
  hgvsc: ENST00000467667.1:c.704+44A>G
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000420616
  ensembl transcript: ENST00000489671
  gene symbol: TFDP2
  hgvsc: ENST00000489671.1:c.884+44A>G
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000419507
  ensembl transcript: ENST00000474279
  gene symbol: TFDP2
  hgvsc: ENST00000474279.1:c.24+44A>G
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000381078
  ensembl transcript: ENST00000397991
  gene symbol: TFDP2
  hgvsc: ENST00000397991.4:c.800+44A>G
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000418590
  ensembl transcript: ENST00000467072
  gene symbol: TFDP2
  hgvsc: ENST00000467072.1:c.704+44A>G
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000420599
  ensembl transcript: ENST00000486111
  gene symbol: TFDP2
  hgvsc: ENST00000486111.1:c.704+44A>G
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000418971
  ensembl transcript: ENST00000477292
  gene symbol: TFDP2
  hgvsc: ENST00000477292.1:c.476+44A>G
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000419036
  ensembl transcript: ENST00000495310
  gene symbol: TFDP2
  hgvsc: ENST00000495310.1:c.593+44A>G
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000309622
  ensembl transcript: ENST00000310282
  gene symbol: TFDP2
  hgvsc: ENST00000310282.6:c.704+44A>G
  variant of: http://identifiers.org/hgnc/11751
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1943
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2186
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5079
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2761
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4365
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4758
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5510
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3030
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1631
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4986
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2232
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 684
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1243
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 854
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5554
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3851
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: South Asian
population: East Asian
reference allele: T
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff

3-141682627-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 141682627
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 141682627
    reference: chr 3
allele count: 1
allele frequency: 8.512087163772557e-6
allele num: 117480
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000439782
  ensembl transcript: ENST00000499676
  gene symbol: TFDP2
  hgvsc: ENST00000499676.2:c.704+27A>G
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000419507
  ensembl transcript: ENST00000474279
  gene symbol: TFDP2
  hgvsc: ENST00000474279.1:c.24+27A>G
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000309622
  ensembl transcript: ENST00000310282
  gene symbol: TFDP2
  hgvsc: ENST00000310282.6:c.704+27A>G
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000418590
  ensembl transcript: ENST00000467072
  gene symbol: TFDP2
  hgvsc: ENST00000467072.1:c.704+27A>G
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000315668
  ensembl transcript: ENST00000317104
  gene symbol: TFDP2
  hgvsc: ENST00000317104.7:c.656+27A>G
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417726
  ensembl transcript: ENST00000467667
  gene symbol: TFDP2
  hgvsc: ENST00000467667.1:c.704+27A>G
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000381078
  ensembl transcript: ENST00000397991
  gene symbol: TFDP2
  hgvsc: ENST00000397991.4:c.800+27A>G
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000420616
  ensembl transcript: ENST00000489671
  gene symbol: TFDP2
  hgvsc: ENST00000489671.1:c.884+27A>G
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000418971
  ensembl transcript: ENST00000477292
  gene symbol: TFDP2
  hgvsc: ENST00000477292.1:c.476+27A>G
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417585
  ensembl transcript: ENST00000479040
  gene symbol: TFDP2
  hgvsc: ENST00000479040.1:c.701+27A>G
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000420599
  ensembl transcript: ENST00000486111
  gene symbol: TFDP2
  hgvsc: ENST00000486111.1:c.704+27A>G
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417384
  ensembl transcript: ENST00000487734
  gene symbol: TFDP2
  hgvsc: ENST00000487734.1:c.*774+27A>G
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000419036
  ensembl transcript: ENST00000495310
  gene symbol: TFDP2
  hgvsc: ENST00000495310.1:c.593+27A>G
  variant of: http://identifiers.org/hgnc/11751
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5079
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4234
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2760
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4393
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5512
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4760
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1899
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4987
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5552
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3029
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1532
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3853
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1243
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2185
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2115
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: Other
reference allele: T
site quality: DP
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum

http://identifiers.org/exac.variant/3-141682629-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 141682629
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 141682629
    reference: chr 3
allele count: 3
allele frequency: 2.553017666882255e-5
allele num: 117508
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417726
  ensembl transcript: ENST00000467667
  gene symbol: TFDP2
  hgvsc: ENST00000467667.1:c.704+25G>T
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000420616
  ensembl transcript: ENST00000489671
  gene symbol: TFDP2
  hgvsc: ENST00000489671.1:c.884+25G>T
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000419036
  ensembl transcript: ENST00000495310
  gene symbol: TFDP2
  hgvsc: ENST00000495310.1:c.593+25G>T
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417384
  ensembl transcript: ENST00000487734
  gene symbol: TFDP2
  hgvsc: ENST00000487734.1:c.*774+25G>T
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000309622
  ensembl transcript: ENST00000310282
  gene symbol: TFDP2
  hgvsc: ENST00000310282.6:c.704+25G>T
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000420599
  ensembl transcript: ENST00000486111
  gene symbol: TFDP2
  hgvsc: ENST00000486111.1:c.704+25G>T
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000419507
  ensembl transcript: ENST00000474279
  gene symbol: TFDP2
  hgvsc: ENST00000474279.1:c.24+25G>T
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000315668
  ensembl transcript: ENST00000317104
  gene symbol: TFDP2
  hgvsc: ENST00000317104.7:c.656+25G>T
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000418590
  ensembl transcript: ENST00000467072
  gene symbol: TFDP2
  hgvsc: ENST00000467072.1:c.704+25G>T
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000439782
  ensembl transcript: ENST00000499676
  gene symbol: TFDP2
  hgvsc: ENST00000499676.2:c.704+25G>T
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417585
  ensembl transcript: ENST00000479040
  gene symbol: TFDP2
  hgvsc: ENST00000479040.1:c.701+25G>T
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000418971
  ensembl transcript: ENST00000477292
  gene symbol: TFDP2
  hgvsc: ENST00000477292.1:c.476+25G>T
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000381078
  ensembl transcript: ENST00000397991
  gene symbol: TFDP2
  hgvsc: ENST00000397991.4:c.800+25G>T
  variant of: http://identifiers.org/hgnc/11751
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5511
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1454
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4760
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4988
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3550
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2185
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2156
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1242
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4234
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1429
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2025
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5552
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4405
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3853
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2760
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Other
population: East Asian
reference allele: C
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: QD

3-141682641-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 141682641
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 141682641
    reference: chr 3
allele count: 1
allele frequency: 8.446516656530846e-6
allele num: 118392
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417585
  ensembl transcript: ENST00000479040
  gene symbol: TFDP2
  hgvsc: ENST00000479040.1:c.701+13C>G
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000420599
  ensembl transcript: ENST00000486111
  gene symbol: TFDP2
  hgvsc: ENST00000486111.1:c.704+13C>G
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000439782
  ensembl transcript: ENST00000499676
  gene symbol: TFDP2
  hgvsc: ENST00000499676.2:c.704+13C>G
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000309622
  ensembl transcript: ENST00000310282
  gene symbol: TFDP2
  hgvsc: ENST00000310282.6:c.704+13C>G
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000420616
  ensembl transcript: ENST00000489671
  gene symbol: TFDP2
  hgvsc: ENST00000489671.1:c.884+13C>G
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000418971
  ensembl transcript: ENST00000477292
  gene symbol: TFDP2
  hgvsc: ENST00000477292.1:c.476+13C>G
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000381078
  ensembl transcript: ENST00000397991
  gene symbol: TFDP2
  hgvsc: ENST00000397991.4:c.800+13C>G
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417726
  ensembl transcript: ENST00000467667
  gene symbol: TFDP2
  hgvsc: ENST00000467667.1:c.704+13C>G
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000418590
  ensembl transcript: ENST00000467072
  gene symbol: TFDP2
  hgvsc: ENST00000467072.1:c.704+13C>G
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000419507
  ensembl transcript: ENST00000474279
  gene symbol: TFDP2
  hgvsc: ENST00000474279.1:c.24+13C>G
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000419036
  ensembl transcript: ENST00000495310
  gene symbol: TFDP2
  hgvsc: ENST00000495310.1:c.593+13C>G
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000315668
  ensembl transcript: ENST00000317104
  gene symbol: TFDP2
  hgvsc: ENST00000317104.7:c.656+13C>G
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417384
  ensembl transcript: ENST00000487734
  gene symbol: TFDP2
  hgvsc: ENST00000487734.1:c.*774+13C>G
  variant of: http://identifiers.org/hgnc/11751
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5510
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3550
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5077
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3029
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2760
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1094
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4986
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2361
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2719
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3853
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4761
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2186
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1632
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 967
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4420
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: Other
population: Latino
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum

3-141682642-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 141682642
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 141682642
    reference: chr 3
allele count: 1
allele frequency: 8.440528039434147e-6
allele num: 118476
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000418971
  ensembl transcript: ENST00000477292
  gene symbol: TFDP2
  hgvsc: ENST00000477292.1:c.476+12A>C
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417726
  ensembl transcript: ENST00000467667
  gene symbol: TFDP2
  hgvsc: ENST00000467667.1:c.704+12A>C
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000420599
  ensembl transcript: ENST00000486111
  gene symbol: TFDP2
  hgvsc: ENST00000486111.1:c.704+12A>C
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000309622
  ensembl transcript: ENST00000310282
  gene symbol: TFDP2
  hgvsc: ENST00000310282.6:c.704+12A>C
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000315668
  ensembl transcript: ENST00000317104
  gene symbol: TFDP2
  hgvsc: ENST00000317104.7:c.656+12A>C
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000420616
  ensembl transcript: ENST00000489671
  gene symbol: TFDP2
  hgvsc: ENST00000489671.1:c.884+12A>C
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000419507
  ensembl transcript: ENST00000474279
  gene symbol: TFDP2
  hgvsc: ENST00000474279.1:c.24+12A>C
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000381078
  ensembl transcript: ENST00000397991
  gene symbol: TFDP2
  hgvsc: ENST00000397991.4:c.800+12A>C
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417384
  ensembl transcript: ENST00000487734
  gene symbol: TFDP2
  hgvsc: ENST00000487734.1:c.*774+12A>C
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000439782
  ensembl transcript: ENST00000499676
  gene symbol: TFDP2
  hgvsc: ENST00000499676.2:c.704+12A>C
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000418590
  ensembl transcript: ENST00000467072
  gene symbol: TFDP2
  hgvsc: ENST00000467072.1:c.704+12A>C
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417585
  ensembl transcript: ENST00000479040
  gene symbol: TFDP2
  hgvsc: ENST00000479040.1:c.701+12A>C
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000419036
  ensembl transcript: ENST00000495310
  gene symbol: TFDP2
  hgvsc: ENST00000495310.1:c.593+12A>C
  variant of: http://identifiers.org/hgnc/11751
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1630
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2186
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2374
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 949
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5511
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2767
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5077
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1056
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3550
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4761
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4235
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1242
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4422
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3853
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2760
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
population: Other
population: East Asian
population: South Asian
reference allele: T
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum

3-141682726-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 141682726
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 141682726
    reference: chr 3
allele count: 8
allele frequency: 6.625258799171843e-5
allele num: 120750
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000419036
  ensembl transcript: ENST00000495310
  gene symbol: TFDP2
  hgvsc: ENST00000495310.1:c.521C>T
  hgvsp: ENSP00000419036.1:p.Thr174Ile
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000418590
  ensembl transcript: ENST00000467072
  gene symbol: TFDP2
  hgvsc: ENST00000467072.1:c.632C>T
  hgvsp: ENSP00000418590.1:p.Thr211Ile
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417726
  ensembl transcript: ENST00000467667
  gene symbol: TFDP2
  hgvsc: ENST00000467667.1:c.632C>T
  hgvsp: ENSP00000417726.1:p.Thr211Ile
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000309622
  ensembl transcript: ENST00000310282
  gene symbol: TFDP2
  hgvsc: ENST00000310282.6:c.632C>T
  hgvsp: ENSP00000309622.6:p.Thr211Ile
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417585
  ensembl transcript: ENST00000479040
  gene symbol: TFDP2
  hgvsc: ENST00000479040.1:c.629C>T
  hgvsp: ENSP00000417585.1:p.Thr210Ile
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000381078
  ensembl transcript: ENST00000397991
  gene symbol: TFDP2
  hgvsc: ENST00000397991.4:c.728C>T
  hgvsp: ENSP00000381078.4:p.Thr243Ile
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000315668
  ensembl transcript: ENST00000317104
  gene symbol: TFDP2
  hgvsc: ENST00000317104.7:c.584C>T
  hgvsp: ENSP00000315668.7:p.Thr195Ile
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000439782
  ensembl transcript: ENST00000499676
  gene symbol: TFDP2
  hgvsc: ENST00000499676.2:c.632C>T
  hgvsp: ENSP00000439782.1:p.Thr211Ile
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000420599
  ensembl transcript: ENST00000486111
  gene symbol: TFDP2
  hgvsc: ENST00000486111.1:c.632C>T
  hgvsp: ENSP00000420599.1:p.Thr211Ile
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000418122
  ensembl transcript: ENST00000478006
  gene symbol: TFDP2
  hgvsc: ENST00000478006.1:c.554C>T
  hgvsp: ENSP00000418122.1:p.Thr185Ile
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417384
  ensembl transcript: ENST00000487734
  gene symbol: TFDP2
  hgvsc: ENST00000487734.1:c.*702C>T
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000418971
  ensembl transcript: ENST00000477292
  gene symbol: TFDP2
  hgvsc: ENST00000477292.1:c.404C>T
  hgvsp: ENSP00000418971.1:p.Thr135Ile
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000420616
  ensembl transcript: ENST00000489671
  gene symbol: TFDP2
  hgvsc: ENST00000489671.1:c.812C>T
  hgvsp: ENSP00000420616.1:p.Thr271Ile
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417220
  ensembl transcript: ENST00000497579
  gene symbol: TFDP2
  hgvsc: ENST00000497579.1:c.629C>T
  hgvsp: ENSP00000417220.1:p.Thr210Ile
  variant of: http://identifiers.org/hgnc/11751
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3351
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5078
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4583
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4760
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4991
  bin: 9.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 5563
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3030
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr271Ile
num of homozygotes: 0
population: East Asian
population: African
population: Other
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum

3-141682727-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 141682727
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 141682727
    reference: chr 3
allele count: 3
allele frequency: 2.484472049689441e-5
allele num: 120750
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000418590
  ensembl transcript: ENST00000467072
  gene symbol: TFDP2
  hgvsc: ENST00000467072.1:c.631A>G
  hgvsp: ENSP00000418590.1:p.Thr211Ala
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000381078
  ensembl transcript: ENST00000397991
  gene symbol: TFDP2
  hgvsc: ENST00000397991.4:c.727A>G
  hgvsp: ENSP00000381078.4:p.Thr243Ala
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000309622
  ensembl transcript: ENST00000310282
  gene symbol: TFDP2
  hgvsc: ENST00000310282.6:c.631A>G
  hgvsp: ENSP00000309622.6:p.Thr211Ala
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000419036
  ensembl transcript: ENST00000495310
  gene symbol: TFDP2
  hgvsc: ENST00000495310.1:c.520A>G
  hgvsp: ENSP00000419036.1:p.Thr174Ala
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000420616
  ensembl transcript: ENST00000489671
  gene symbol: TFDP2
  hgvsc: ENST00000489671.1:c.811A>G
  hgvsp: ENSP00000420616.1:p.Thr271Ala
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000439782
  ensembl transcript: ENST00000499676
  gene symbol: TFDP2
  hgvsc: ENST00000499676.2:c.631A>G
  hgvsp: ENSP00000439782.1:p.Thr211Ala
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417726
  ensembl transcript: ENST00000467667
  gene symbol: TFDP2
  hgvsc: ENST00000467667.1:c.631A>G
  hgvsp: ENSP00000417726.1:p.Thr211Ala
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000420599
  ensembl transcript: ENST00000486111
  gene symbol: TFDP2
  hgvsc: ENST00000486111.1:c.631A>G
  hgvsp: ENSP00000420599.1:p.Thr211Ala
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000418122
  ensembl transcript: ENST00000478006
  gene symbol: TFDP2
  hgvsc: ENST00000478006.1:c.553A>G
  hgvsp: ENSP00000418122.1:p.Thr185Ala
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000315668
  ensembl transcript: ENST00000317104
  gene symbol: TFDP2
  hgvsc: ENST00000317104.7:c.583A>G
  hgvsp: ENSP00000315668.7:p.Thr195Ala
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417585
  ensembl transcript: ENST00000479040
  gene symbol: TFDP2
  hgvsc: ENST00000479040.1:c.628A>G
  hgvsp: ENSP00000417585.1:p.Thr210Ala
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000418971
  ensembl transcript: ENST00000477292
  gene symbol: TFDP2
  hgvsc: ENST00000477292.1:c.403A>G
  hgvsp: ENSP00000418971.1:p.Thr135Ala
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417220
  ensembl transcript: ENST00000497579
  gene symbol: TFDP2
  hgvsc: ENST00000497579.1:c.628A>G
  hgvsp: ENSP00000417220.1:p.Thr210Ala
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417384
  ensembl transcript: ENST00000487734
  gene symbol: TFDP2
  hgvsc: ENST00000487734.1:c.*701A>G
  variant of: http://identifiers.org/hgnc/11751
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5514
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5565
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4758
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2756
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4584
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4045
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3854
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2186
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3352
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr271Ala
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
reference allele: T
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: VQSLOD

3-141682728-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 141682728
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 141682728
    reference: chr 3
allele count: 12
allele frequency: 9.938052804187233e-5
allele num: 120748
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000418971
  ensembl transcript: ENST00000477292
  gene symbol: TFDP2
  hgvsc: ENST00000477292.1:c.402T>C
  hgvsp: ENST00000477292.1:c.402T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000439782
  ensembl transcript: ENST00000499676
  gene symbol: TFDP2
  hgvsc: ENST00000499676.2:c.630T>C
  hgvsp: ENST00000499676.2:c.630T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417726
  ensembl transcript: ENST00000467667
  gene symbol: TFDP2
  hgvsc: ENST00000467667.1:c.630T>C
  hgvsp: ENST00000467667.1:c.630T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417220
  ensembl transcript: ENST00000497579
  gene symbol: TFDP2
  hgvsc: ENST00000497579.1:c.627T>C
  hgvsp: ENST00000497579.1:c.627T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000420616
  ensembl transcript: ENST00000489671
  gene symbol: TFDP2
  hgvsc: ENST00000489671.1:c.810T>C
  hgvsp: ENST00000489671.1:c.810T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000420599
  ensembl transcript: ENST00000486111
  gene symbol: TFDP2
  hgvsc: ENST00000486111.1:c.630T>C
  hgvsp: ENST00000486111.1:c.630T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000309622
  ensembl transcript: ENST00000310282
  gene symbol: TFDP2
  hgvsc: ENST00000310282.6:c.630T>C
  hgvsp: ENST00000310282.6:c.630T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000419036
  ensembl transcript: ENST00000495310
  gene symbol: TFDP2
  hgvsc: ENST00000495310.1:c.519T>C
  hgvsp: ENST00000495310.1:c.519T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000418122
  ensembl transcript: ENST00000478006
  gene symbol: TFDP2
  hgvsc: ENST00000478006.1:c.552T>C
  hgvsp: ENST00000478006.1:c.552T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000315668
  ensembl transcript: ENST00000317104
  gene symbol: TFDP2
  hgvsc: ENST00000317104.7:c.582T>C
  hgvsp: ENST00000317104.7:c.582T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000418590
  ensembl transcript: ENST00000467072
  gene symbol: TFDP2
  hgvsc: ENST00000467072.1:c.630T>C
  hgvsp: ENST00000467072.1:c.630T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417384
  ensembl transcript: ENST00000487734
  gene symbol: TFDP2
  hgvsc: ENST00000487734.1:c.*700T>C
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000381078
  ensembl transcript: ENST00000397991
  gene symbol: TFDP2
  hgvsc: ENST00000397991.4:c.726T>C
  hgvsp: ENST00000397991.4:c.726T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417585
  ensembl transcript: ENST00000479040
  gene symbol: TFDP2
  hgvsc: ENST00000479040.1:c.627T>C
  hgvsp: ENST00000479040.1:c.627T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11751
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4993
  bin: 9.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 3552
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4233
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5513
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1629
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4758
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2184
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5564
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser270Ser
num of homozygotes: 0
population: African
population: Other
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: South Asian
reference allele: A
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD

3-141682731-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 141682731
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 141682731
    reference: chr 3
allele count: 1
allele frequency: 8.281847845891375e-6
allele num: 120746
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000439782
  ensembl transcript: ENST00000499676
  gene symbol: TFDP2
  hgvsc: ENST00000499676.2:c.627C>T
  hgvsp: ENST00000499676.2:c.627C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417585
  ensembl transcript: ENST00000479040
  gene symbol: TFDP2
  hgvsc: ENST00000479040.1:c.624C>T
  hgvsp: ENST00000479040.1:c.624C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417220
  ensembl transcript: ENST00000497579
  gene symbol: TFDP2
  hgvsc: ENST00000497579.1:c.624C>T
  hgvsp: ENST00000497579.1:c.624C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000420599
  ensembl transcript: ENST00000486111
  gene symbol: TFDP2
  hgvsc: ENST00000486111.1:c.627C>T
  hgvsp: ENST00000486111.1:c.627C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417726
  ensembl transcript: ENST00000467667
  gene symbol: TFDP2
  hgvsc: ENST00000467667.1:c.627C>T
  hgvsp: ENST00000467667.1:c.627C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000418590
  ensembl transcript: ENST00000467072
  gene symbol: TFDP2
  hgvsc: ENST00000467072.1:c.627C>T
  hgvsp: ENST00000467072.1:c.627C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000309622
  ensembl transcript: ENST00000310282
  gene symbol: TFDP2
  hgvsc: ENST00000310282.6:c.627C>T
  hgvsp: ENST00000310282.6:c.627C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000420616
  ensembl transcript: ENST00000489671
  gene symbol: TFDP2
  hgvsc: ENST00000489671.1:c.807C>T
  hgvsp: ENST00000489671.1:c.807C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000315668
  ensembl transcript: ENST00000317104
  gene symbol: TFDP2
  hgvsc: ENST00000317104.7:c.579C>T
  hgvsp: ENST00000317104.7:c.579C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000381078
  ensembl transcript: ENST00000397991
  gene symbol: TFDP2
  hgvsc: ENST00000397991.4:c.723C>T
  hgvsp: ENST00000397991.4:c.723C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000418971
  ensembl transcript: ENST00000477292
  gene symbol: TFDP2
  hgvsc: ENST00000477292.1:c.399C>T
  hgvsp: ENST00000477292.1:c.399C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417384
  ensembl transcript: ENST00000487734
  gene symbol: TFDP2
  hgvsc: ENST00000487734.1:c.*697C>T
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000418122
  ensembl transcript: ENST00000478006
  gene symbol: TFDP2
  hgvsc: ENST00000478006.1:c.549C>T
  hgvsp: ENST00000478006.1:c.549C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000419036
  ensembl transcript: ENST00000495310
  gene symbol: TFDP2
  hgvsc: ENST00000495310.1:c.516C>T
  hgvsp: ENST00000495310.1:c.516C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11751
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4985
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3851
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4044
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2184
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3355
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5513
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3034
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5078
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asn269Asn
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
population: African
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD

3-141682738-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 141682738
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 141682738
    reference: chr 3
allele count: 1
allele frequency: 8.281847845891375e-6
allele num: 120746
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000309622
  ensembl transcript: ENST00000310282
  gene symbol: TFDP2
  hgvsc: ENST00000310282.6:c.620C>T
  hgvsp: ENSP00000309622.6:p.Ala207Val
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000418590
  ensembl transcript: ENST00000467072
  gene symbol: TFDP2
  hgvsc: ENST00000467072.1:c.620C>T
  hgvsp: ENSP00000418590.1:p.Ala207Val
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000418971
  ensembl transcript: ENST00000477292
  gene symbol: TFDP2
  hgvsc: ENST00000477292.1:c.392C>T
  hgvsp: ENSP00000418971.1:p.Ala131Val
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000418122
  ensembl transcript: ENST00000478006
  gene symbol: TFDP2
  hgvsc: ENST00000478006.1:c.542C>T
  hgvsp: ENSP00000418122.1:p.Ala181Val
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417726
  ensembl transcript: ENST00000467667
  gene symbol: TFDP2
  hgvsc: ENST00000467667.1:c.620C>T
  hgvsp: ENSP00000417726.1:p.Ala207Val
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000315668
  ensembl transcript: ENST00000317104
  gene symbol: TFDP2
  hgvsc: ENST00000317104.7:c.572C>T
  hgvsp: ENSP00000315668.7:p.Ala191Val
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000381078
  ensembl transcript: ENST00000397991
  gene symbol: TFDP2
  hgvsc: ENST00000397991.4:c.716C>T
  hgvsp: ENSP00000381078.4:p.Ala239Val
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000419036
  ensembl transcript: ENST00000495310
  gene symbol: TFDP2
  hgvsc: ENST00000495310.1:c.509C>T
  hgvsp: ENSP00000419036.1:p.Ala170Val
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000420616
  ensembl transcript: ENST00000489671
  gene symbol: TFDP2
  hgvsc: ENST00000489671.1:c.800C>T
  hgvsp: ENSP00000420616.1:p.Ala267Val
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000420599
  ensembl transcript: ENST00000486111
  gene symbol: TFDP2
  hgvsc: ENST00000486111.1:c.620C>T
  hgvsp: ENSP00000420599.1:p.Ala207Val
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417585
  ensembl transcript: ENST00000479040
  gene symbol: TFDP2
  hgvsc: ENST00000479040.1:c.617C>T
  hgvsp: ENSP00000417585.1:p.Ala206Val
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417220
  ensembl transcript: ENST00000497579
  gene symbol: TFDP2
  hgvsc: ENST00000497579.1:c.617C>T
  hgvsp: ENSP00000417220.1:p.Ala206Val
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000439782
  ensembl transcript: ENST00000499676
  gene symbol: TFDP2
  hgvsc: ENST00000499676.2:c.620C>T
  hgvsp: ENSP00000439782.1:p.Ala207Val
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417384
  ensembl transcript: ENST00000487734
  gene symbol: TFDP2
  hgvsc: ENST00000487734.1:c.*690C>T
  variant of: http://identifiers.org/hgnc/11751
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4580
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1628
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4759
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1245
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3355
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5513
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4233
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2757
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala267Val
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD

3-141682740-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 141682740
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 141682740
    reference: chr 3
allele count: 5
allele frequency: 4.140923922945688e-5
allele num: 120746
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000420616
  ensembl transcript: ENST00000489671
  gene symbol: TFDP2
  hgvsc: ENST00000489671.1:c.798G>A
  hgvsp: ENST00000489671.1:c.798G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000419036
  ensembl transcript: ENST00000495310
  gene symbol: TFDP2
  hgvsc: ENST00000495310.1:c.507G>A
  hgvsp: ENST00000495310.1:c.507G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417585
  ensembl transcript: ENST00000479040
  gene symbol: TFDP2
  hgvsc: ENST00000479040.1:c.615G>A
  hgvsp: ENST00000479040.1:c.615G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000418590
  ensembl transcript: ENST00000467072
  gene symbol: TFDP2
  hgvsc: ENST00000467072.1:c.618G>A
  hgvsp: ENST00000467072.1:c.618G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000309622
  ensembl transcript: ENST00000310282
  gene symbol: TFDP2
  hgvsc: ENST00000310282.6:c.618G>A
  hgvsp: ENST00000310282.6:c.618G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417220
  ensembl transcript: ENST00000497579
  gene symbol: TFDP2
  hgvsc: ENST00000497579.1:c.615G>A
  hgvsp: ENST00000497579.1:c.615G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000420599
  ensembl transcript: ENST00000486111
  gene symbol: TFDP2
  hgvsc: ENST00000486111.1:c.618G>A
  hgvsp: ENST00000486111.1:c.618G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000381078
  ensembl transcript: ENST00000397991
  gene symbol: TFDP2
  hgvsc: ENST00000397991.4:c.714G>A
  hgvsp: ENST00000397991.4:c.714G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000315668
  ensembl transcript: ENST00000317104
  gene symbol: TFDP2
  hgvsc: ENST00000317104.7:c.570G>A
  hgvsp: ENST00000317104.7:c.570G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000439782
  ensembl transcript: ENST00000499676
  gene symbol: TFDP2
  hgvsc: ENST00000499676.2:c.618G>A
  hgvsp: ENST00000499676.2:c.618G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417726
  ensembl transcript: ENST00000467667
  gene symbol: TFDP2
  hgvsc: ENST00000467667.1:c.618G>A
  hgvsp: ENST00000467667.1:c.618G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000418122
  ensembl transcript: ENST00000478006
  gene symbol: TFDP2
  hgvsc: ENST00000478006.1:c.540G>A
  hgvsp: ENST00000478006.1:c.540G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000418971
  ensembl transcript: ENST00000477292
  gene symbol: TFDP2
  hgvsc: ENST00000477292.1:c.390G>A
  hgvsp: ENST00000477292.1:c.390G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417384
  ensembl transcript: ENST00000487734
  gene symbol: TFDP2
  hgvsc: ENST00000487734.1:c.*688G>A
  variant of: http://identifiers.org/hgnc/11751
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4578
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4988
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 4233
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3032
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3353
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3552
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5079
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4046
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5513
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Pro266Pro
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: C
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum

http://identifiers.org/exac.variant/3-141682743-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 141682743
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 141682743
    reference: chr 3
allele count: 2
allele frequency: 1.656698861847882e-5
allele num: 120722
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000420616
  ensembl transcript: ENST00000489671
  gene symbol: TFDP2
  hgvsc: ENST00000489671.1:c.795G>T
  hgvsp: ENST00000489671.1:c.795G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000381078
  ensembl transcript: ENST00000397991
  gene symbol: TFDP2
  hgvsc: ENST00000397991.4:c.711G>T
  hgvsp: ENST00000397991.4:c.711G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000439782
  ensembl transcript: ENST00000499676
  gene symbol: TFDP2
  hgvsc: ENST00000499676.2:c.615G>T
  hgvsp: ENST00000499676.2:c.615G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000419036
  ensembl transcript: ENST00000495310
  gene symbol: TFDP2
  hgvsc: ENST00000495310.1:c.504G>T
  hgvsp: ENST00000495310.1:c.504G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417220
  ensembl transcript: ENST00000497579
  gene symbol: TFDP2
  hgvsc: ENST00000497579.1:c.612G>T
  hgvsp: ENST00000497579.1:c.612G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000309622
  ensembl transcript: ENST00000310282
  gene symbol: TFDP2
  hgvsc: ENST00000310282.6:c.615G>T
  hgvsp: ENST00000310282.6:c.615G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000418971
  ensembl transcript: ENST00000477292
  gene symbol: TFDP2
  hgvsc: ENST00000477292.1:c.387G>T
  hgvsp: ENST00000477292.1:c.387G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000418590
  ensembl transcript: ENST00000467072
  gene symbol: TFDP2
  hgvsc: ENST00000467072.1:c.615G>T
  hgvsp: ENST00000467072.1:c.615G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417585
  ensembl transcript: ENST00000479040
  gene symbol: TFDP2
  hgvsc: ENST00000479040.1:c.612G>T
  hgvsp: ENST00000479040.1:c.612G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417726
  ensembl transcript: ENST00000467667
  gene symbol: TFDP2
  hgvsc: ENST00000467667.1:c.615G>T
  hgvsp: ENST00000467667.1:c.615G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417384
  ensembl transcript: ENST00000487734
  gene symbol: TFDP2
  hgvsc: ENST00000487734.1:c.*685G>T
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000418122
  ensembl transcript: ENST00000478006
  gene symbol: TFDP2
  hgvsc: ENST00000478006.1:c.537G>T
  hgvsp: ENST00000478006.1:c.537G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000420599
  ensembl transcript: ENST00000486111
  gene symbol: TFDP2
  hgvsc: ENST00000486111.1:c.615G>T
  hgvsp: ENST00000486111.1:c.615G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000315668
  ensembl transcript: ENST00000317104
  gene symbol: TFDP2
  hgvsc: ENST00000317104.7:c.567G>T
  hgvsp: ENST00000317104.7:c.567G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11751
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3356
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3032
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2756
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4760
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4233
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4037
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3849
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro265Pro
num of homozygotes: 0
population: African
population: European (Finnish)
population: South Asian
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: C
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: MQ

3-141682743-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 141682743
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 141682743
    reference: chr 3
allele count: 1
allele frequency: 8.28349430923941e-6
allele num: 120722
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000315668
  ensembl transcript: ENST00000317104
  gene symbol: TFDP2
  hgvsc: ENST00000317104.7:c.567G>A
  hgvsp: ENST00000317104.7:c.567G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417585
  ensembl transcript: ENST00000479040
  gene symbol: TFDP2
  hgvsc: ENST00000479040.1:c.612G>A
  hgvsp: ENST00000479040.1:c.612G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000420616
  ensembl transcript: ENST00000489671
  gene symbol: TFDP2
  hgvsc: ENST00000489671.1:c.795G>A
  hgvsp: ENST00000489671.1:c.795G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000381078
  ensembl transcript: ENST00000397991
  gene symbol: TFDP2
  hgvsc: ENST00000397991.4:c.711G>A
  hgvsp: ENST00000397991.4:c.711G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417220
  ensembl transcript: ENST00000497579
  gene symbol: TFDP2
  hgvsc: ENST00000497579.1:c.612G>A
  hgvsp: ENST00000497579.1:c.612G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000420599
  ensembl transcript: ENST00000486111
  gene symbol: TFDP2
  hgvsc: ENST00000486111.1:c.615G>A
  hgvsp: ENST00000486111.1:c.615G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000418590
  ensembl transcript: ENST00000467072
  gene symbol: TFDP2
  hgvsc: ENST00000467072.1:c.615G>A
  hgvsp: ENST00000467072.1:c.615G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000439782
  ensembl transcript: ENST00000499676
  gene symbol: TFDP2
  hgvsc: ENST00000499676.2:c.615G>A
  hgvsp: ENST00000499676.2:c.615G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417384
  ensembl transcript: ENST00000487734
  gene symbol: TFDP2
  hgvsc: ENST00000487734.1:c.*685G>A
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000418971
  ensembl transcript: ENST00000477292
  gene symbol: TFDP2
  hgvsc: ENST00000477292.1:c.387G>A
  hgvsp: ENST00000477292.1:c.387G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000419036
  ensembl transcript: ENST00000495310
  gene symbol: TFDP2
  hgvsc: ENST00000495310.1:c.504G>A
  hgvsp: ENST00000495310.1:c.504G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000309622
  ensembl transcript: ENST00000310282
  gene symbol: TFDP2
  hgvsc: ENST00000310282.6:c.615G>A
  hgvsp: ENST00000310282.6:c.615G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417726
  ensembl transcript: ENST00000467667
  gene symbol: TFDP2
  hgvsc: ENST00000467667.1:c.615G>A
  hgvsp: ENST00000467667.1:c.615G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000418122
  ensembl transcript: ENST00000478006
  gene symbol: TFDP2
  hgvsc: ENST00000478006.1:c.537G>A
  hgvsp: ENST00000478006.1:c.537G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11751
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4992
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3552
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3356
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5081
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5566
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4037
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4578
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro265Pro
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: C
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP

3-141682744-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 141682744
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 141682744
    reference: chr 3
allele count: 1
allele frequency: 8.28349430923941e-6
allele num: 120722
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000315668
  ensembl transcript: ENST00000317104
  gene symbol: TFDP2
  hgvsc: ENST00000317104.7:c.566C>T
  hgvsp: ENSP00000315668.7:p.Pro189Leu
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000419036
  ensembl transcript: ENST00000495310
  gene symbol: TFDP2
  hgvsc: ENST00000495310.1:c.503C>T
  hgvsp: ENSP00000419036.1:p.Pro168Leu
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417585
  ensembl transcript: ENST00000479040
  gene symbol: TFDP2
  hgvsc: ENST00000479040.1:c.611C>T
  hgvsp: ENSP00000417585.1:p.Pro204Leu
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417384
  ensembl transcript: ENST00000487734
  gene symbol: TFDP2
  hgvsc: ENST00000487734.1:c.*684C>T
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000381078
  ensembl transcript: ENST00000397991
  gene symbol: TFDP2
  hgvsc: ENST00000397991.4:c.710C>T
  hgvsp: ENSP00000381078.4:p.Pro237Leu
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000309622
  ensembl transcript: ENST00000310282
  gene symbol: TFDP2
  hgvsc: ENST00000310282.6:c.614C>T
  hgvsp: ENSP00000309622.6:p.Pro205Leu
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417220
  ensembl transcript: ENST00000497579
  gene symbol: TFDP2
  hgvsc: ENST00000497579.1:c.611C>T
  hgvsp: ENSP00000417220.1:p.Pro204Leu
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000418122
  ensembl transcript: ENST00000478006
  gene symbol: TFDP2
  hgvsc: ENST00000478006.1:c.536C>T
  hgvsp: ENSP00000418122.1:p.Pro179Leu
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417726
  ensembl transcript: ENST00000467667
  gene symbol: TFDP2
  hgvsc: ENST00000467667.1:c.614C>T
  hgvsp: ENSP00000417726.1:p.Pro205Leu
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000418590
  ensembl transcript: ENST00000467072
  gene symbol: TFDP2
  hgvsc: ENST00000467072.1:c.614C>T
  hgvsp: ENSP00000418590.1:p.Pro205Leu
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000418971
  ensembl transcript: ENST00000477292
  gene symbol: TFDP2
  hgvsc: ENST00000477292.1:c.386C>T
  hgvsp: ENSP00000418971.1:p.Pro129Leu
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000420616
  ensembl transcript: ENST00000489671
  gene symbol: TFDP2
  hgvsc: ENST00000489671.1:c.794C>T
  hgvsp: ENSP00000420616.1:p.Pro265Leu
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000420599
  ensembl transcript: ENST00000486111
  gene symbol: TFDP2
  hgvsc: ENST00000486111.1:c.614C>T
  hgvsp: ENSP00000420599.1:p.Pro205Leu
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000439782
  ensembl transcript: ENST00000499676
  gene symbol: TFDP2
  hgvsc: ENST00000499676.2:c.614C>T
  hgvsp: ENSP00000439782.1:p.Pro205Leu
  variant of: http://identifiers.org/hgnc/11751
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5565
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5079
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1626
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5514
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3032
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4037
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2184
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4761
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro265Leu
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum

3-141682747-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 141682747
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 141682747
    reference: chr 3
allele count: 3
allele frequency: 2.484883624616914e-5
allele num: 120730
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000381078
  ensembl transcript: ENST00000397991
  gene symbol: TFDP2
  hgvsc: ENST00000397991.4:c.707G>A
  hgvsp: ENSP00000381078.4:p.Gly236Asp
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417220
  ensembl transcript: ENST00000497579
  gene symbol: TFDP2
  hgvsc: ENST00000497579.1:c.608G>A
  hgvsp: ENSP00000417220.1:p.Gly203Asp
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417585
  ensembl transcript: ENST00000479040
  gene symbol: TFDP2
  hgvsc: ENST00000479040.1:c.608G>A
  hgvsp: ENSP00000417585.1:p.Gly203Asp
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000439782
  ensembl transcript: ENST00000499676
  gene symbol: TFDP2
  hgvsc: ENST00000499676.2:c.611G>A
  hgvsp: ENSP00000439782.1:p.Gly204Asp
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000418122
  ensembl transcript: ENST00000478006
  gene symbol: TFDP2
  hgvsc: ENST00000478006.1:c.533G>A
  hgvsp: ENSP00000418122.1:p.Gly178Asp
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000419036
  ensembl transcript: ENST00000495310
  gene symbol: TFDP2
  hgvsc: ENST00000495310.1:c.500G>A
  hgvsp: ENSP00000419036.1:p.Gly167Asp
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417726
  ensembl transcript: ENST00000467667
  gene symbol: TFDP2
  hgvsc: ENST00000467667.1:c.611G>A
  hgvsp: ENSP00000417726.1:p.Gly204Asp
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000418971
  ensembl transcript: ENST00000477292
  gene symbol: TFDP2
  hgvsc: ENST00000477292.1:c.383G>A
  hgvsp: ENSP00000418971.1:p.Gly128Asp
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000315668
  ensembl transcript: ENST00000317104
  gene symbol: TFDP2
  hgvsc: ENST00000317104.7:c.563G>A
  hgvsp: ENSP00000315668.7:p.Gly188Asp
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000420616
  ensembl transcript: ENST00000489671
  gene symbol: TFDP2
  hgvsc: ENST00000489671.1:c.791G>A
  hgvsp: ENSP00000420616.1:p.Gly264Asp
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000309622
  ensembl transcript: ENST00000310282
  gene symbol: TFDP2
  hgvsc: ENST00000310282.6:c.611G>A
  hgvsp: ENSP00000309622.6:p.Gly204Asp
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000418590
  ensembl transcript: ENST00000467072
  gene symbol: TFDP2
  hgvsc: ENST00000467072.1:c.611G>A
  hgvsp: ENSP00000418590.1:p.Gly204Asp
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000420599
  ensembl transcript: ENST00000486111
  gene symbol: TFDP2
  hgvsc: ENST00000486111.1:c.611G>A
  hgvsp: ENSP00000420599.1:p.Gly204Asp
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417384
  ensembl transcript: ENST00000487734
  gene symbol: TFDP2
  hgvsc: ENST00000487734.1:c.*681G>A
  variant of: http://identifiers.org/hgnc/11751
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3356
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1626
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5566
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3848
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3035
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2756
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5079
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4232
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4029
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly264Asp
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: Other
population: African
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: FS

3-141682749-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 141682749
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 141682749
    reference: chr 3
allele count: 4
allele frequency: 3.313178166155885e-5
allele num: 120730
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417220
  ensembl transcript: ENST00000497579
  gene symbol: TFDP2
  hgvsc: ENST00000497579.1:c.606G>A
  hgvsp: ENST00000497579.1:c.606G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000418122
  ensembl transcript: ENST00000478006
  gene symbol: TFDP2
  hgvsc: ENST00000478006.1:c.531G>A
  hgvsp: ENST00000478006.1:c.531G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000309622
  ensembl transcript: ENST00000310282
  gene symbol: TFDP2
  hgvsc: ENST00000310282.6:c.609G>A
  hgvsp: ENST00000310282.6:c.609G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417384
  ensembl transcript: ENST00000487734
  gene symbol: TFDP2
  hgvsc: ENST00000487734.1:c.*679G>A
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000419036
  ensembl transcript: ENST00000495310
  gene symbol: TFDP2
  hgvsc: ENST00000495310.1:c.498G>A
  hgvsp: ENST00000495310.1:c.498G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000418971
  ensembl transcript: ENST00000477292
  gene symbol: TFDP2
  hgvsc: ENST00000477292.1:c.381G>A
  hgvsp: ENST00000477292.1:c.381G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000420599
  ensembl transcript: ENST00000486111
  gene symbol: TFDP2
  hgvsc: ENST00000486111.1:c.609G>A
  hgvsp: ENST00000486111.1:c.609G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417585
  ensembl transcript: ENST00000479040
  gene symbol: TFDP2
  hgvsc: ENST00000479040.1:c.606G>A
  hgvsp: ENST00000479040.1:c.606G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000418590
  ensembl transcript: ENST00000467072
  gene symbol: TFDP2
  hgvsc: ENST00000467072.1:c.609G>A
  hgvsp: ENST00000467072.1:c.609G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000381078
  ensembl transcript: ENST00000397991
  gene symbol: TFDP2
  hgvsc: ENST00000397991.4:c.705G>A
  hgvsp: ENST00000397991.4:c.705G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000420616
  ensembl transcript: ENST00000489671
  gene symbol: TFDP2
  hgvsc: ENST00000489671.1:c.789G>A
  hgvsp: ENST00000489671.1:c.789G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417726
  ensembl transcript: ENST00000467667
  gene symbol: TFDP2
  hgvsc: ENST00000467667.1:c.609G>A
  hgvsp: ENST00000467667.1:c.609G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000439782
  ensembl transcript: ENST00000499676
  gene symbol: TFDP2
  hgvsc: ENST00000499676.2:c.609G>A
  hgvsp: ENST00000499676.2:c.609G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000315668
  ensembl transcript: ENST00000317104
  gene symbol: TFDP2
  hgvsc: ENST00000317104.7:c.561G>A
  hgvsp: ENST00000317104.7:c.561G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11751
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2755
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4024
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3848
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4232
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5078
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5565
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4582
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3357
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gln263Gln
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
population: Other
population: African
reference allele: C
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum

3-141682750-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 141682750
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 141682750
    reference: chr 3
allele count: 750
allele frequency: 6.212209061542284e-3
allele num: 120730
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417220
  ensembl transcript: ENST00000497579
  gene symbol: TFDP2
  hgvsc: ENST00000497579.1:c.605A>G
  hgvsp: ENSP00000417220.1:p.Gln202Arg
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000418590
  ensembl transcript: ENST00000467072
  gene symbol: TFDP2
  hgvsc: ENST00000467072.1:c.608A>G
  hgvsp: ENSP00000418590.1:p.Gln203Arg
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000420616
  ensembl transcript: ENST00000489671
  gene symbol: TFDP2
  hgvsc: ENST00000489671.1:c.788A>G
  hgvsp: ENSP00000420616.1:p.Gln263Arg
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000309622
  ensembl transcript: ENST00000310282
  gene symbol: TFDP2
  hgvsc: ENST00000310282.6:c.608A>G
  hgvsp: ENSP00000309622.6:p.Gln203Arg
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000418971
  ensembl transcript: ENST00000477292
  gene symbol: TFDP2
  hgvsc: ENST00000477292.1:c.380A>G
  hgvsp: ENSP00000418971.1:p.Gln127Arg
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000381078
  ensembl transcript: ENST00000397991
  gene symbol: TFDP2
  hgvsc: ENST00000397991.4:c.704A>G
  hgvsp: ENSP00000381078.4:p.Gln235Arg
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000420599
  ensembl transcript: ENST00000486111
  gene symbol: TFDP2
  hgvsc: ENST00000486111.1:c.608A>G
  hgvsp: ENSP00000420599.1:p.Gln203Arg
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417384
  ensembl transcript: ENST00000487734
  gene symbol: TFDP2
  hgvsc: ENST00000487734.1:c.*678A>G
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000439782
  ensembl transcript: ENST00000499676
  gene symbol: TFDP2
  hgvsc: ENST00000499676.2:c.608A>G
  hgvsp: ENSP00000439782.1:p.Gln203Arg
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417585
  ensembl transcript: ENST00000479040
  gene symbol: TFDP2
  hgvsc: ENST00000479040.1:c.605A>G
  hgvsp: ENSP00000417585.1:p.Gln202Arg
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000418122
  ensembl transcript: ENST00000478006
  gene symbol: TFDP2
  hgvsc: ENST00000478006.1:c.530A>G
  hgvsp: ENSP00000418122.1:p.Gln177Arg
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417726
  ensembl transcript: ENST00000467667
  gene symbol: TFDP2
  hgvsc: ENST00000467667.1:c.608A>G
  hgvsp: ENSP00000417726.1:p.Gln203Arg
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000419036
  ensembl transcript: ENST00000495310
  gene symbol: TFDP2
  hgvsc: ENST00000495310.1:c.497A>G
  hgvsp: ENSP00000419036.1:p.Gln166Arg
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000315668
  ensembl transcript: ENST00000317104
  gene symbol: TFDP2
  hgvsc: ENST00000317104.7:c.560A>G
  hgvsp: ENSP00000315668.7:p.Gln187Arg
  variant of: http://identifiers.org/hgnc/11751
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5070
  bin: 4.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2118
  bin: 8.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 4580
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 3801
  bin: 6.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 5563
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3350
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5505
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1220
  bin: 9.25e1
  variant carriers: 25
genotype quality: GenotypeQuality
hgvs: p.Gln263Arg
num of homozygotes: 3
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
population: South Asian
reference allele: T
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum

3-141682752-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 141682752
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 141682752
    reference: chr 3
allele count: 1
allele frequency: 8.282945415389712e-6
allele num: 120730
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000418122
  ensembl transcript: ENST00000478006
  gene symbol: TFDP2
  hgvsc: ENST00000478006.1:c.528C>T
  hgvsp: ENST00000478006.1:c.528C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000419036
  ensembl transcript: ENST00000495310
  gene symbol: TFDP2
  hgvsc: ENST00000495310.1:c.495C>T
  hgvsp: ENST00000495310.1:c.495C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000420616
  ensembl transcript: ENST00000489671
  gene symbol: TFDP2
  hgvsc: ENST00000489671.1:c.786C>T
  hgvsp: ENST00000489671.1:c.786C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000418971
  ensembl transcript: ENST00000477292
  gene symbol: TFDP2
  hgvsc: ENST00000477292.1:c.378C>T
  hgvsp: ENST00000477292.1:c.378C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000420599
  ensembl transcript: ENST00000486111
  gene symbol: TFDP2
  hgvsc: ENST00000486111.1:c.606C>T
  hgvsp: ENST00000486111.1:c.606C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000418590
  ensembl transcript: ENST00000467072
  gene symbol: TFDP2
  hgvsc: ENST00000467072.1:c.606C>T
  hgvsp: ENST00000467072.1:c.606C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000309622
  ensembl transcript: ENST00000310282
  gene symbol: TFDP2
  hgvsc: ENST00000310282.6:c.606C>T
  hgvsp: ENST00000310282.6:c.606C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417726
  ensembl transcript: ENST00000467667
  gene symbol: TFDP2
  hgvsc: ENST00000467667.1:c.606C>T
  hgvsp: ENST00000467667.1:c.606C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000381078
  ensembl transcript: ENST00000397991
  gene symbol: TFDP2
  hgvsc: ENST00000397991.4:c.702C>T
  hgvsp: ENST00000397991.4:c.702C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000439782
  ensembl transcript: ENST00000499676
  gene symbol: TFDP2
  hgvsc: ENST00000499676.2:c.606C>T
  hgvsp: ENST00000499676.2:c.606C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417220
  ensembl transcript: ENST00000497579
  gene symbol: TFDP2
  hgvsc: ENST00000497579.1:c.603C>T
  hgvsp: ENST00000497579.1:c.603C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000315668
  ensembl transcript: ENST00000317104
  gene symbol: TFDP2
  hgvsc: ENST00000317104.7:c.558C>T
  hgvsp: ENST00000317104.7:c.558C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417585
  ensembl transcript: ENST00000479040
  gene symbol: TFDP2
  hgvsc: ENST00000479040.1:c.603C>T
  hgvsp: ENST00000479040.1:c.603C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417384
  ensembl transcript: ENST00000487734
  gene symbol: TFDP2
  hgvsc: ENST00000487734.1:c.*676C>T
  variant of: http://identifiers.org/hgnc/11751
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1215
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3823
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5131
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4245
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5595
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4013
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3400
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5651
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3526
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4882
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asn262Asn
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: Other
population: South Asian
population: European (Non-Finnish)
population: Latino
reference allele: G
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum

3-141682758-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 141682758
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 141682758
    reference: chr 3
allele count: 1
allele frequency: 8.283082632032337e-6
allele num: 120728
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000419036
  ensembl transcript: ENST00000495310
  gene symbol: TFDP2
  hgvsc: ENST00000495310.1:c.489G>A
  hgvsp: ENST00000495310.1:c.489G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417585
  ensembl transcript: ENST00000479040
  gene symbol: TFDP2
  hgvsc: ENST00000479040.1:c.597G>A
  hgvsp: ENST00000479040.1:c.597G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000418122
  ensembl transcript: ENST00000478006
  gene symbol: TFDP2
  hgvsc: ENST00000478006.1:c.522G>A
  hgvsp: ENST00000478006.1:c.522G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000315668
  ensembl transcript: ENST00000317104
  gene symbol: TFDP2
  hgvsc: ENST00000317104.7:c.552G>A
  hgvsp: ENST00000317104.7:c.552G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417220
  ensembl transcript: ENST00000497579
  gene symbol: TFDP2
  hgvsc: ENST00000497579.1:c.597G>A
  hgvsp: ENST00000497579.1:c.597G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417384
  ensembl transcript: ENST00000487734
  gene symbol: TFDP2
  hgvsc: ENST00000487734.1:c.*670G>A
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417726
  ensembl transcript: ENST00000467667
  gene symbol: TFDP2
  hgvsc: ENST00000467667.1:c.600G>A
  hgvsp: ENST00000467667.1:c.600G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000418590
  ensembl transcript: ENST00000467072
  gene symbol: TFDP2
  hgvsc: ENST00000467072.1:c.600G>A
  hgvsp: ENST00000467072.1:c.600G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000418971
  ensembl transcript: ENST00000477292
  gene symbol: TFDP2
  hgvsc: ENST00000477292.1:c.372G>A
  hgvsp: ENST00000477292.1:c.372G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000309622
  ensembl transcript: ENST00000310282
  gene symbol: TFDP2
  hgvsc: ENST00000310282.6:c.600G>A
  hgvsp: ENST00000310282.6:c.600G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000439782
  ensembl transcript: ENST00000499676
  gene symbol: TFDP2
  hgvsc: ENST00000499676.2:c.600G>A
  hgvsp: ENST00000499676.2:c.600G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000420599
  ensembl transcript: ENST00000486111
  gene symbol: TFDP2
  hgvsc: ENST00000486111.1:c.600G>A
  hgvsp: ENST00000486111.1:c.600G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000420616
  ensembl transcript: ENST00000489671
  gene symbol: TFDP2
  hgvsc: ENST00000489671.1:c.780G>A
  hgvsp: ENST00000489671.1:c.780G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000381078
  ensembl transcript: ENST00000397991
  gene symbol: TFDP2
  hgvsc: ENST00000397991.4:c.696G>A
  hgvsp: ENST00000397991.4:c.696G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11751
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3397
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5131
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2982
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5594
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4652
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4881
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4806
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1598
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4004
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gln260Gln
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
population: European (Finnish)
population: East Asian
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff

3-141682761-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 141682761
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 141682761
    reference: chr 3
allele count: 6
allele frequency: 4.970014247374176e-5
allele num: 120724
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000419036
  ensembl transcript: ENST00000495310
  gene symbol: TFDP2
  hgvsc: ENST00000495310.1:c.486G>A
  hgvsp: ENST00000495310.1:c.486G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417384
  ensembl transcript: ENST00000487734
  gene symbol: TFDP2
  hgvsc: ENST00000487734.1:c.*667G>A
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000315668
  ensembl transcript: ENST00000317104
  gene symbol: TFDP2
  hgvsc: ENST00000317104.7:c.549G>A
  hgvsp: ENST00000317104.7:c.549G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000309622
  ensembl transcript: ENST00000310282
  gene symbol: TFDP2
  hgvsc: ENST00000310282.6:c.597G>A
  hgvsp: ENST00000310282.6:c.597G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000418971
  ensembl transcript: ENST00000477292
  gene symbol: TFDP2
  hgvsc: ENST00000477292.1:c.369G>A
  hgvsp: ENST00000477292.1:c.369G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417220
  ensembl transcript: ENST00000497579
  gene symbol: TFDP2
  hgvsc: ENST00000497579.1:c.594G>A
  hgvsp: ENST00000497579.1:c.594G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417726
  ensembl transcript: ENST00000467667
  gene symbol: TFDP2
  hgvsc: ENST00000467667.1:c.597G>A
  hgvsp: ENST00000467667.1:c.597G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000420599
  ensembl transcript: ENST00000486111
  gene symbol: TFDP2
  hgvsc: ENST00000486111.1:c.597G>A
  hgvsp: ENST00000486111.1:c.597G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000418590
  ensembl transcript: ENST00000467072
  gene symbol: TFDP2
  hgvsc: ENST00000467072.1:c.597G>A
  hgvsp: ENST00000467072.1:c.597G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000381078
  ensembl transcript: ENST00000397991
  gene symbol: TFDP2
  hgvsc: ENST00000397991.4:c.693G>A
  hgvsp: ENST00000397991.4:c.693G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417585
  ensembl transcript: ENST00000479040
  gene symbol: TFDP2
  hgvsc: ENST00000479040.1:c.594G>A
  hgvsp: ENST00000479040.1:c.594G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000439782
  ensembl transcript: ENST00000499676
  gene symbol: TFDP2
  hgvsc: ENST00000499676.2:c.597G>A
  hgvsp: ENST00000499676.2:c.597G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000418122
  ensembl transcript: ENST00000478006
  gene symbol: TFDP2
  hgvsc: ENST00000478006.1:c.519G>A
  hgvsp: ENST00000478006.1:c.519G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000420616
  ensembl transcript: ENST00000489671
  gene symbol: TFDP2
  hgvsc: ENST00000489671.1:c.777G>A
  hgvsp: ENST00000489671.1:c.777G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11751
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5132
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1598
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2981
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5594
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2707
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3824
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2120
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4883
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 5649
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1216
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Glu259Glu
num of homozygotes: 0
population: East Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum

3-141682772-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 141682772
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 141682772
    reference: chr 3
allele count: 1
allele frequency: 8.286239870071759e-6
allele num: 120682
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000418971
  ensembl transcript: ENST00000477292
  gene symbol: TFDP2
  hgvsc: ENST00000477292.1:c.358C>G
  hgvsp: ENSP00000418971.1:p.Arg120Gly
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000418590
  ensembl transcript: ENST00000467072
  gene symbol: TFDP2
  hgvsc: ENST00000467072.1:c.586C>G
  hgvsp: ENSP00000418590.1:p.Arg196Gly
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417384
  ensembl transcript: ENST00000487734
  gene symbol: TFDP2
  hgvsc: ENST00000487734.1:c.*656C>G
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417585
  ensembl transcript: ENST00000479040
  gene symbol: TFDP2
  hgvsc: ENST00000479040.1:c.583C>G
  hgvsp: ENSP00000417585.1:p.Arg195Gly
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417726
  ensembl transcript: ENST00000467667
  gene symbol: TFDP2
  hgvsc: ENST00000467667.1:c.586C>G
  hgvsp: ENSP00000417726.1:p.Arg196Gly
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000419036
  ensembl transcript: ENST00000495310
  gene symbol: TFDP2
  hgvsc: ENST00000495310.1:c.475C>G
  hgvsp: ENSP00000419036.1:p.Arg159Gly
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000420599
  ensembl transcript: ENST00000486111
  gene symbol: TFDP2
  hgvsc: ENST00000486111.1:c.586C>G
  hgvsp: ENSP00000420599.1:p.Arg196Gly
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000315668
  ensembl transcript: ENST00000317104
  gene symbol: TFDP2
  hgvsc: ENST00000317104.7:c.538C>G
  hgvsp: ENSP00000315668.7:p.Arg180Gly
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000420616
  ensembl transcript: ENST00000489671
  gene symbol: TFDP2
  hgvsc: ENST00000489671.1:c.766C>G
  hgvsp: ENSP00000420616.1:p.Arg256Gly
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000309622
  ensembl transcript: ENST00000310282
  gene symbol: TFDP2
  hgvsc: ENST00000310282.6:c.586C>G
  hgvsp: ENSP00000309622.6:p.Arg196Gly
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000418122
  ensembl transcript: ENST00000478006
  gene symbol: TFDP2
  hgvsc: ENST00000478006.1:c.508C>G
  hgvsp: ENSP00000418122.1:p.Arg170Gly
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000381078
  ensembl transcript: ENST00000397991
  gene symbol: TFDP2
  hgvsc: ENST00000397991.4:c.682C>G
  hgvsp: ENSP00000381078.4:p.Arg228Gly
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000439782
  ensembl transcript: ENST00000499676
  gene symbol: TFDP2
  hgvsc: ENST00000499676.2:c.586C>G
  hgvsp: ENSP00000439782.1:p.Arg196Gly
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417220
  ensembl transcript: ENST00000497579
  gene symbol: TFDP2
  hgvsc: ENST00000497579.1:c.583C>G
  hgvsp: ENSP00000417220.1:p.Arg195Gly
  variant of: http://identifiers.org/hgnc/11751
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5132
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2707
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4653
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5595
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2981
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3935
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3527
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1598
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3823
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg256Gly
num of homozygotes: 0
population: East Asian
population: Other
population: African
population: European (Finnish)
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ

3-141682781-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 141682781
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 141682781
    reference: chr 3
allele count: 3
allele frequency: 2.486861083939851e-5
allele num: 120634
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000309622
  ensembl transcript: ENST00000310282
  gene symbol: TFDP2
  hgvsc: ENST00000310282.6:c.577C>A
  hgvsp: ENSP00000309622.6:p.Gln193Lys
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000315668
  ensembl transcript: ENST00000317104
  gene symbol: TFDP2
  hgvsc: ENST00000317104.7:c.529C>A
  hgvsp: ENSP00000315668.7:p.Gln177Lys
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000420616
  ensembl transcript: ENST00000489671
  gene symbol: TFDP2
  hgvsc: ENST00000489671.1:c.757C>A
  hgvsp: ENSP00000420616.1:p.Gln253Lys
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000381078
  ensembl transcript: ENST00000397991
  gene symbol: TFDP2
  hgvsc: ENST00000397991.4:c.673C>A
  hgvsp: ENSP00000381078.4:p.Gln225Lys
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417726
  ensembl transcript: ENST00000467667
  gene symbol: TFDP2
  hgvsc: ENST00000467667.1:c.577C>A
  hgvsp: ENSP00000417726.1:p.Gln193Lys
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000420599
  ensembl transcript: ENST00000486111
  gene symbol: TFDP2
  hgvsc: ENST00000486111.1:c.577C>A
  hgvsp: ENSP00000420599.1:p.Gln193Lys
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000439782
  ensembl transcript: ENST00000499676
  gene symbol: TFDP2
  hgvsc: ENST00000499676.2:c.577C>A
  hgvsp: ENSP00000439782.1:p.Gln193Lys
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000418122
  ensembl transcript: ENST00000478006
  gene symbol: TFDP2
  hgvsc: ENST00000478006.1:c.499C>A
  hgvsp: ENSP00000418122.1:p.Gln167Lys
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000418590
  ensembl transcript: ENST00000467072
  gene symbol: TFDP2
  hgvsc: ENST00000467072.1:c.577C>A
  hgvsp: ENSP00000418590.1:p.Gln193Lys
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000419036
  ensembl transcript: ENST00000495310
  gene symbol: TFDP2
  hgvsc: ENST00000495310.1:c.466C>A
  hgvsp: ENSP00000419036.1:p.Gln156Lys
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417384
  ensembl transcript: ENST00000487734
  gene symbol: TFDP2
  hgvsc: ENST00000487734.1:c.*647C>A
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417585
  ensembl transcript: ENST00000479040
  gene symbol: TFDP2
  hgvsc: ENST00000479040.1:c.574C>A
  hgvsp: ENSP00000417585.1:p.Gln192Lys
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000418971
  ensembl transcript: ENST00000477292
  gene symbol: TFDP2
  hgvsc: ENST00000477292.1:c.349C>A
  hgvsp: ENSP00000418971.1:p.Gln117Lys
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417220
  ensembl transcript: ENST00000497579
  gene symbol: TFDP2
  hgvsc: ENST00000497579.1:c.574C>A
  hgvsp: ENSP00000417220.1:p.Gln192Lys
  variant of: http://identifiers.org/hgnc/11751
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4647
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1598
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3390
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5131
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4243
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3824
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3527
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4806
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gln253Lys
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: East Asian
reference allele: G
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: DP

3-141682792-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 141682792
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 141682792
    reference: chr 3
allele count: 2
allele frequency: 1.660384877214538e-5
allele num: 120454
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000418122
  ensembl transcript: ENST00000478006
  gene symbol: TFDP2
  hgvsc: ENST00000478006.1:c.488A>G
  hgvsp: ENSP00000418122.1:p.Lys163Arg
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000420599
  ensembl transcript: ENST00000486111
  gene symbol: TFDP2
  hgvsc: ENST00000486111.1:c.566A>G
  hgvsp: ENSP00000420599.1:p.Lys189Arg
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000418590
  ensembl transcript: ENST00000467072
  gene symbol: TFDP2
  hgvsc: ENST00000467072.1:c.566A>G
  hgvsp: ENSP00000418590.1:p.Lys189Arg
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000420616
  ensembl transcript: ENST00000489671
  gene symbol: TFDP2
  hgvsc: ENST00000489671.1:c.746A>G
  hgvsp: ENSP00000420616.1:p.Lys249Arg
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000418971
  ensembl transcript: ENST00000477292
  gene symbol: TFDP2
  hgvsc: ENST00000477292.1:c.338A>G
  hgvsp: ENSP00000418971.1:p.Lys113Arg
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000315668
  ensembl transcript: ENST00000317104
  gene symbol: TFDP2
  hgvsc: ENST00000317104.7:c.518A>G
  hgvsp: ENSP00000315668.7:p.Lys173Arg
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000419036
  ensembl transcript: ENST00000495310
  gene symbol: TFDP2
  hgvsc: ENST00000495310.1:c.455A>G
  hgvsp: ENSP00000419036.1:p.Lys152Arg
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000381078
  ensembl transcript: ENST00000397991
  gene symbol: TFDP2
  hgvsc: ENST00000397991.4:c.662A>G
  hgvsp: ENSP00000381078.4:p.Lys221Arg
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000439782
  ensembl transcript: ENST00000499676
  gene symbol: TFDP2
  hgvsc: ENST00000499676.2:c.566A>G
  hgvsp: ENSP00000439782.1:p.Lys189Arg
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000309622
  ensembl transcript: ENST00000310282
  gene symbol: TFDP2
  hgvsc: ENST00000310282.6:c.566A>G
  hgvsp: ENSP00000309622.6:p.Lys189Arg
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417726
  ensembl transcript: ENST00000467667
  gene symbol: TFDP2
  hgvsc: ENST00000467667.1:c.566A>G
  hgvsp: ENSP00000417726.1:p.Lys189Arg
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417220
  ensembl transcript: ENST00000497579
  gene symbol: TFDP2
  hgvsc: ENST00000497579.1:c.563A>G
  hgvsp: ENSP00000417220.1:p.Lys188Arg
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417384
  ensembl transcript: ENST00000487734
  gene symbol: TFDP2
  hgvsc: ENST00000487734.1:c.*636A>G
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417585
  ensembl transcript: ENST00000479040
  gene symbol: TFDP2
  hgvsc: ENST00000479040.1:c.563A>G
  hgvsp: ENSP00000417585.1:p.Lys188Arg
  variant of: http://identifiers.org/hgnc/11751
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4243
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3527
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5596
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2120
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4806
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5652
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5131
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3309
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Lys249Arg
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: Other
population: South Asian
population: European (Finnish)
population: East Asian
reference allele: T
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD

3-141682796-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 141682796
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 141682796
    reference: chr 3
allele count: 1
allele frequency: 8.304958059961797e-6
allele num: 120410
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000315668
  ensembl transcript: ENST00000317104
  gene symbol: TFDP2
  hgvsc: ENST00000317104.7:c.514T>C
  hgvsp: ENSP00000315668.7:p.Phe172Leu
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000419036
  ensembl transcript: ENST00000495310
  gene symbol: TFDP2
  hgvsc: ENST00000495310.1:c.451T>C
  hgvsp: ENSP00000419036.1:p.Phe151Leu
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000420616
  ensembl transcript: ENST00000489671
  gene symbol: TFDP2
  hgvsc: ENST00000489671.1:c.742T>C
  hgvsp: ENSP00000420616.1:p.Phe248Leu
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000381078
  ensembl transcript: ENST00000397991
  gene symbol: TFDP2
  hgvsc: ENST00000397991.4:c.658T>C
  hgvsp: ENSP00000381078.4:p.Phe220Leu
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417726
  ensembl transcript: ENST00000467667
  gene symbol: TFDP2
  hgvsc: ENST00000467667.1:c.562T>C
  hgvsp: ENSP00000417726.1:p.Phe188Leu
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000418122
  ensembl transcript: ENST00000478006
  gene symbol: TFDP2
  hgvsc: ENST00000478006.1:c.484T>C
  hgvsp: ENSP00000418122.1:p.Phe162Leu
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000439782
  ensembl transcript: ENST00000499676
  gene symbol: TFDP2
  hgvsc: ENST00000499676.2:c.562T>C
  hgvsp: ENSP00000439782.1:p.Phe188Leu
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417384
  ensembl transcript: ENST00000487734
  gene symbol: TFDP2
  hgvsc: ENST00000487734.1:c.*632T>C
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417220
  ensembl transcript: ENST00000497579
  gene symbol: TFDP2
  hgvsc: ENST00000497579.1:c.559T>C
  hgvsp: ENSP00000417220.1:p.Phe187Leu
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000420599
  ensembl transcript: ENST00000486111
  gene symbol: TFDP2
  hgvsc: ENST00000486111.1:c.562T>C
  hgvsp: ENSP00000420599.1:p.Phe188Leu
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417585
  ensembl transcript: ENST00000479040
  gene symbol: TFDP2
  hgvsc: ENST00000479040.1:c.559T>C
  hgvsp: ENSP00000417585.1:p.Phe187Leu
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000309622
  ensembl transcript: ENST00000310282
  gene symbol: TFDP2
  hgvsc: ENST00000310282.6:c.562T>C
  hgvsp: ENSP00000309622.6:p.Phe188Leu
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000418590
  ensembl transcript: ENST00000467072
  gene symbol: TFDP2
  hgvsc: ENST00000467072.1:c.562T>C
  hgvsp: ENSP00000418590.1:p.Phe188Leu
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000418971
  ensembl transcript: ENST00000477292
  gene symbol: TFDP2
  hgvsc: ENST00000477292.1:c.334T>C
  hgvsp: ENSP00000418971.1:p.Phe112Leu
  variant of: http://identifiers.org/hgnc/11751
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5652
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2980
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2120
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1216
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3267
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3437
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5131
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4633
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4806
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Phe248Leu
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: A
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD

3-141682799-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 141682799
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 141682799
    reference: chr 3
allele count: 1
allele frequency: 8.309512730173502e-6
allele num: 120344
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417220
  ensembl transcript: ENST00000497579
  gene symbol: TFDP2
  hgvsc: ENST00000497579.1:c.556G>A
  hgvsp: ENSP00000417220.1:p.Ala186Thr
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000418590
  ensembl transcript: ENST00000467072
  gene symbol: TFDP2
  hgvsc: ENST00000467072.1:c.559G>A
  hgvsp: ENSP00000418590.1:p.Ala187Thr
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417726
  ensembl transcript: ENST00000467667
  gene symbol: TFDP2
  hgvsc: ENST00000467667.1:c.559G>A
  hgvsp: ENSP00000417726.1:p.Ala187Thr
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000418971
  ensembl transcript: ENST00000477292
  gene symbol: TFDP2
  hgvsc: ENST00000477292.1:c.331G>A
  hgvsp: ENSP00000418971.1:p.Ala111Thr
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000315668
  ensembl transcript: ENST00000317104
  gene symbol: TFDP2
  hgvsc: ENST00000317104.7:c.511G>A
  hgvsp: ENSP00000315668.7:p.Ala171Thr
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000418122
  ensembl transcript: ENST00000478006
  gene symbol: TFDP2
  hgvsc: ENST00000478006.1:c.481G>A
  hgvsp: ENSP00000418122.1:p.Ala161Thr
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417585
  ensembl transcript: ENST00000479040
  gene symbol: TFDP2
  hgvsc: ENST00000479040.1:c.556G>A
  hgvsp: ENSP00000417585.1:p.Ala186Thr
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000420599
  ensembl transcript: ENST00000486111
  gene symbol: TFDP2
  hgvsc: ENST00000486111.1:c.559G>A
  hgvsp: ENSP00000420599.1:p.Ala187Thr
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000439782
  ensembl transcript: ENST00000499676
  gene symbol: TFDP2
  hgvsc: ENST00000499676.2:c.559G>A
  hgvsp: ENSP00000439782.1:p.Ala187Thr
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000309622
  ensembl transcript: ENST00000310282
  gene symbol: TFDP2
  hgvsc: ENST00000310282.6:c.559G>A
  hgvsp: ENSP00000309622.6:p.Ala187Thr
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000381078
  ensembl transcript: ENST00000397991
  gene symbol: TFDP2
  hgvsc: ENST00000397991.4:c.655G>A
  hgvsp: ENSP00000381078.4:p.Ala219Thr
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417384
  ensembl transcript: ENST00000487734
  gene symbol: TFDP2
  hgvsc: ENST00000487734.1:c.*629G>A
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000419036
  ensembl transcript: ENST00000495310
  gene symbol: TFDP2
  hgvsc: ENST00000495310.1:c.448G>A
  hgvsp: ENSP00000419036.1:p.Ala150Thr
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000420616
  ensembl transcript: ENST00000489671
  gene symbol: TFDP2
  hgvsc: ENST00000489671.1:c.739G>A
  hgvsp: ENSP00000420616.1:p.Ala247Thr
  variant of: http://identifiers.org/hgnc/11751
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4647
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5598
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2120
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5665
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3527
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4806
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4243
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3277
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4879
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala247Thr
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: South Asian
population: African
population: European (Finnish)
population: East Asian
population: Other
reference allele: C
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD

3-141682800-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 141682800
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 141682800
    reference: chr 3
allele count: 2
allele frequency: 1.662316937347275e-5
allele num: 120314
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000418122
  ensembl transcript: ENST00000478006
  gene symbol: TFDP2
  hgvsc: ENST00000478006.1:c.480C>T
  hgvsp: ENST00000478006.1:c.480C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000420599
  ensembl transcript: ENST00000486111
  gene symbol: TFDP2
  hgvsc: ENST00000486111.1:c.558C>T
  hgvsp: ENST00000486111.1:c.558C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000418971
  ensembl transcript: ENST00000477292
  gene symbol: TFDP2
  hgvsc: ENST00000477292.1:c.330C>T
  hgvsp: ENST00000477292.1:c.330C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417384
  ensembl transcript: ENST00000487734
  gene symbol: TFDP2
  hgvsc: ENST00000487734.1:c.*628C>T
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000381078
  ensembl transcript: ENST00000397991
  gene symbol: TFDP2
  hgvsc: ENST00000397991.4:c.654C>T
  hgvsp: ENST00000397991.4:c.654C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000309622
  ensembl transcript: ENST00000310282
  gene symbol: TFDP2
  hgvsc: ENST00000310282.6:c.558C>T
  hgvsp: ENST00000310282.6:c.558C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000315668
  ensembl transcript: ENST00000317104
  gene symbol: TFDP2
  hgvsc: ENST00000317104.7:c.510C>T
  hgvsp: ENST00000317104.7:c.510C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417726
  ensembl transcript: ENST00000467667
  gene symbol: TFDP2
  hgvsc: ENST00000467667.1:c.558C>T
  hgvsp: ENST00000467667.1:c.558C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000418590
  ensembl transcript: ENST00000467072
  gene symbol: TFDP2
  hgvsc: ENST00000467072.1:c.558C>T
  hgvsp: ENST00000467072.1:c.558C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000420616
  ensembl transcript: ENST00000489671
  gene symbol: TFDP2
  hgvsc: ENST00000489671.1:c.738C>T
  hgvsp: ENST00000489671.1:c.738C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000439782
  ensembl transcript: ENST00000499676
  gene symbol: TFDP2
  hgvsc: ENST00000499676.2:c.558C>T
  hgvsp: ENST00000499676.2:c.558C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417220
  ensembl transcript: ENST00000497579
  gene symbol: TFDP2
  hgvsc: ENST00000497579.1:c.555C>T
  hgvsp: ENST00000497579.1:c.555C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417585
  ensembl transcript: ENST00000479040
  gene symbol: TFDP2
  hgvsc: ENST00000479040.1:c.555C>T
  hgvsp: ENST00000479040.1:c.555C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000419036
  ensembl transcript: ENST00000495310
  gene symbol: TFDP2
  hgvsc: ENST00000495310.1:c.447C>T
  hgvsp: ENST00000495310.1:c.447C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11751
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3248
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5594
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1598
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5656
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5131
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2980
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1216
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3823
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ile246Ile
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: South Asian
population: Latino
reference allele: G
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP

3-141682803-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 141682803
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 141682803
    reference: chr 3
allele count: 1
allele frequency: 8.315316813570598e-6
allele num: 120260
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417726
  ensembl transcript: ENST00000467667
  gene symbol: TFDP2
  hgvsc: ENST00000467667.1:c.555A>G
  hgvsp: ENST00000467667.1:c.555A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000309622
  ensembl transcript: ENST00000310282
  gene symbol: TFDP2
  hgvsc: ENST00000310282.6:c.555A>G
  hgvsp: ENST00000310282.6:c.555A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417220
  ensembl transcript: ENST00000497579
  gene symbol: TFDP2
  hgvsc: ENST00000497579.1:c.552A>G
  hgvsp: ENST00000497579.1:c.552A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000381078
  ensembl transcript: ENST00000397991
  gene symbol: TFDP2
  hgvsc: ENST00000397991.4:c.651A>G
  hgvsp: ENST00000397991.4:c.651A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000420599
  ensembl transcript: ENST00000486111
  gene symbol: TFDP2
  hgvsc: ENST00000486111.1:c.555A>G
  hgvsp: ENST00000486111.1:c.555A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000315668
  ensembl transcript: ENST00000317104
  gene symbol: TFDP2
  hgvsc: ENST00000317104.7:c.507A>G
  hgvsp: ENST00000317104.7:c.507A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000439782
  ensembl transcript: ENST00000499676
  gene symbol: TFDP2
  hgvsc: ENST00000499676.2:c.555A>G
  hgvsp: ENST00000499676.2:c.555A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000418590
  ensembl transcript: ENST00000467072
  gene symbol: TFDP2
  hgvsc: ENST00000467072.1:c.555A>G
  hgvsp: ENST00000467072.1:c.555A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417384
  ensembl transcript: ENST00000487734
  gene symbol: TFDP2
  hgvsc: ENST00000487734.1:c.*625A>G
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000419036
  ensembl transcript: ENST00000495310
  gene symbol: TFDP2
  hgvsc: ENST00000495310.1:c.444A>G
  hgvsp: ENST00000495310.1:c.444A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417585
  ensembl transcript: ENST00000479040
  gene symbol: TFDP2
  hgvsc: ENST00000479040.1:c.552A>G
  hgvsp: ENST00000479040.1:c.552A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000420616
  ensembl transcript: ENST00000489671
  gene symbol: TFDP2
  hgvsc: ENST00000489671.1:c.735A>G
  hgvsp: ENST00000489671.1:c.735A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000418971
  ensembl transcript: ENST00000477292
  gene symbol: TFDP2
  hgvsc: ENST00000477292.1:c.327A>G
  hgvsp: ENST00000477292.1:c.327A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000418122
  ensembl transcript: ENST00000478006
  gene symbol: TFDP2
  hgvsc: ENST00000478006.1:c.477A>G
  hgvsp: ENST00000478006.1:c.477A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11751
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1598
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4879
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4612
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3041
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2707
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5593
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.735A>G
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
population: African
population: European (Finnish)
population: Other
reference allele: T
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum

3-141682803-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 141682803
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 141682803
    reference: chr 3
allele count: 1
allele frequency: 8.315316813570598e-6
allele num: 120260
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000418590
  ensembl transcript: ENST00000467072
  gene symbol: TFDP2
  hgvsc: ENST00000467072.1:c.555A>C
  hgvsp: ENSP00000418590.1:p.Gln185His
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000315668
  ensembl transcript: ENST00000317104
  gene symbol: TFDP2
  hgvsc: ENST00000317104.7:c.507A>C
  hgvsp: ENSP00000315668.7:p.Gln169His
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417220
  ensembl transcript: ENST00000497579
  gene symbol: TFDP2
  hgvsc: ENST00000497579.1:c.552A>C
  hgvsp: ENSP00000417220.1:p.Gln184His
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417726
  ensembl transcript: ENST00000467667
  gene symbol: TFDP2
  hgvsc: ENST00000467667.1:c.555A>C
  hgvsp: ENSP00000417726.1:p.Gln185His
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000419036
  ensembl transcript: ENST00000495310
  gene symbol: TFDP2
  hgvsc: ENST00000495310.1:c.444A>C
  hgvsp: ENSP00000419036.1:p.Gln148His
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000439782
  ensembl transcript: ENST00000499676
  gene symbol: TFDP2
  hgvsc: ENST00000499676.2:c.555A>C
  hgvsp: ENSP00000439782.1:p.Gln185His
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000381078
  ensembl transcript: ENST00000397991
  gene symbol: TFDP2
  hgvsc: ENST00000397991.4:c.651A>C
  hgvsp: ENSP00000381078.4:p.Gln217His
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000418971
  ensembl transcript: ENST00000477292
  gene symbol: TFDP2
  hgvsc: ENST00000477292.1:c.327A>C
  hgvsp: ENSP00000418971.1:p.Gln109His
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000309622
  ensembl transcript: ENST00000310282
  gene symbol: TFDP2
  hgvsc: ENST00000310282.6:c.555A>C
  hgvsp: ENSP00000309622.6:p.Gln185His
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000420616
  ensembl transcript: ENST00000489671
  gene symbol: TFDP2
  hgvsc: ENST00000489671.1:c.735A>C
  hgvsp: ENSP00000420616.1:p.Gln245His
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000418122
  ensembl transcript: ENST00000478006
  gene symbol: TFDP2
  hgvsc: ENST00000478006.1:c.477A>C
  hgvsp: ENSP00000418122.1:p.Gln159His
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417384
  ensembl transcript: ENST00000487734
  gene symbol: TFDP2
  hgvsc: ENST00000487734.1:c.*625A>C
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417585
  ensembl transcript: ENST00000479040
  gene symbol: TFDP2
  hgvsc: ENST00000479040.1:c.552A>C
  hgvsp: ENSP00000417585.1:p.Gln184His
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000420599
  ensembl transcript: ENST00000486111
  gene symbol: TFDP2
  hgvsc: ENST00000486111.1:c.555A>C
  hgvsp: ENSP00000420599.1:p.Gln185His
  variant of: http://identifiers.org/hgnc/11751
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3821
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2980
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3529
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1216
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3041
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1598
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5131
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gln245His
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
population: Other
population: South Asian
population: European (Finnish)
reference allele: T
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum

3-141682819-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 141682819
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 141682819
    reference: chr 3
allele count: 1
allele frequency: 8.3462700519138e-6
allele num: 119814
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417726
  ensembl transcript: ENST00000467667
  gene symbol: TFDP2
  hgvsc: ENST00000467667.1:c.553-14A>G
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000418971
  ensembl transcript: ENST00000477292
  gene symbol: TFDP2
  hgvsc: ENST00000477292.1:c.325-14A>G
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000381078
  ensembl transcript: ENST00000397991
  gene symbol: TFDP2
  hgvsc: ENST00000397991.4:c.649-14A>G
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000418590
  ensembl transcript: ENST00000467072
  gene symbol: TFDP2
  hgvsc: ENST00000467072.1:c.553-14A>G
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000419036
  ensembl transcript: ENST00000495310
  gene symbol: TFDP2
  hgvsc: ENST00000495310.1:c.442-14A>G
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000418122
  ensembl transcript: ENST00000478006
  gene symbol: TFDP2
  hgvsc: ENST00000478006.1:c.475-14A>G
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417585
  ensembl transcript: ENST00000479040
  gene symbol: TFDP2
  hgvsc: ENST00000479040.1:c.550-14A>G
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000309622
  ensembl transcript: ENST00000310282
  gene symbol: TFDP2
  hgvsc: ENST00000310282.6:c.553-14A>G
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000420599
  ensembl transcript: ENST00000486111
  gene symbol: TFDP2
  hgvsc: ENST00000486111.1:c.553-14A>G
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417384
  ensembl transcript: ENST00000487734
  gene symbol: TFDP2
  hgvsc: ENST00000487734.1:c.*623-14A>G
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000420616
  ensembl transcript: ENST00000489671
  gene symbol: TFDP2
  hgvsc: ENST00000489671.1:c.733-14A>G
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000439782
  ensembl transcript: ENST00000499676
  gene symbol: TFDP2
  hgvsc: ENST00000499676.2:c.553-14A>G
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417220
  ensembl transcript: ENST00000497579
  gene symbol: TFDP2
  hgvsc: ENST00000497579.1:c.550-14A>G
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000315668
  ensembl transcript: ENST00000317104
  gene symbol: TFDP2
  hgvsc: ENST00000317104.7:c.505-14A>G
  variant of: http://identifiers.org/hgnc/11751
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5592
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2707
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2979
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4243
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4806
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3528
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3821
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4493
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1217
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1320
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1598
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4878
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2425
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: Other
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
reference allele: T
site quality: DP
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ

3-141682825-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 141682825
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 141682825
    reference: chr 3
allele count: 29116
allele frequency: 2.434326037155327e-1
allele num: 119606
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000419036
  ensembl transcript: ENST00000495310
  gene symbol: TFDP2
  hgvsc: ENST00000495310.1:c.442-20G>C
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417726
  ensembl transcript: ENST00000467667
  gene symbol: TFDP2
  hgvsc: ENST00000467667.1:c.553-20G>C
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000418971
  ensembl transcript: ENST00000477292
  gene symbol: TFDP2
  hgvsc: ENST00000477292.1:c.325-20G>C
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000418590
  ensembl transcript: ENST00000467072
  gene symbol: TFDP2
  hgvsc: ENST00000467072.1:c.553-20G>C
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000381078
  ensembl transcript: ENST00000397991
  gene symbol: TFDP2
  hgvsc: ENST00000397991.4:c.649-20G>C
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000420616
  ensembl transcript: ENST00000489671
  gene symbol: TFDP2
  hgvsc: ENST00000489671.1:c.733-20G>C
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417585
  ensembl transcript: ENST00000479040
  gene symbol: TFDP2
  hgvsc: ENST00000479040.1:c.550-20G>C
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000418122
  ensembl transcript: ENST00000478006
  gene symbol: TFDP2
  hgvsc: ENST00000478006.1:c.475-20G>C
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000439782
  ensembl transcript: ENST00000499676
  gene symbol: TFDP2
  hgvsc: ENST00000499676.2:c.553-20G>C
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417220
  ensembl transcript: ENST00000497579
  gene symbol: TFDP2
  hgvsc: ENST00000497579.1:c.550-20G>C
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000309622
  ensembl transcript: ENST00000310282
  gene symbol: TFDP2
  hgvsc: ENST00000310282.6:c.553-20G>C
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417384
  ensembl transcript: ENST00000487734
  gene symbol: TFDP2
  hgvsc: ENST00000487734.1:c.*623-20G>C
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000420599
  ensembl transcript: ENST00000486111
  gene symbol: TFDP2
  hgvsc: ENST00000486111.1:c.553-20G>C
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000315668
  ensembl transcript: ENST00000317104
  gene symbol: TFDP2
  hgvsc: ENST00000317104.7:c.505-20G>C
  variant of: http://identifiers.org/hgnc/11751
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5584
  bin: 3.75e1
  variant carriers: 350
genotype depth: GenotypeDepth
  all individuals: 1929
  bin: 8.75e1
  variant carriers: 1655
genotype depth: GenotypeDepth
  all individuals: 2521
  bin: 2.75e1
  variant carriers: 503
genotype depth: GenotypeDepth
  all individuals: 6538
  bin: 9.75e1
  variant carriers: 5299
genotype depth: GenotypeDepth
  all individuals: 950
  bin: 1.75e1
  variant carriers: 503
genotype depth: GenotypeDepth
  all individuals: 4391
  bin: 5.25e1
  variant carriers: 1081
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1691
  bin: 2.25e1
  variant carriers: 643
genotype depth: GenotypeDepth
  all individuals: 1716
  bin: 1.25e1
  variant carriers: 221
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 7.5e0
  variant carriers: 49
genotype depth: GenotypeDepth
  all individuals: 5389
  bin: 4.25e1
  variant carriers: 454
genotype depth: GenotypeDepth
  all individuals: 4848
  bin: 4.75e1
  variant carriers: 736
genotype depth: GenotypeDepth
  all individuals: 2882
  bin: 7.25e1
  variant carriers: 2321
genotype depth: GenotypeDepth
  all individuals: 3207
  bin: 6.75e1
  variant carriers: 2245
genotype quality: GenotypeQuality
num of homozygotes: 3623
population: Latino
population: East Asian
population: European (Non-Finnish)
population: African
population: South Asian
population: European (Finnish)
population: Other
reference allele: C
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: DP

3-141682829-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 141682829
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 141682829
    reference: chr 3
allele count: 1
allele frequency: 8.384759860477596e-6
allele num: 119264
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000420599
  ensembl transcript: ENST00000486111
  gene symbol: TFDP2
  hgvsc: ENST00000486111.1:c.553-24T>C
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000418122
  ensembl transcript: ENST00000478006
  gene symbol: TFDP2
  hgvsc: ENST00000478006.1:c.475-24T>C
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417220
  ensembl transcript: ENST00000497579
  gene symbol: TFDP2
  hgvsc: ENST00000497579.1:c.550-24T>C
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000381078
  ensembl transcript: ENST00000397991
  gene symbol: TFDP2
  hgvsc: ENST00000397991.4:c.649-24T>C
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000420616
  ensembl transcript: ENST00000489671
  gene symbol: TFDP2
  hgvsc: ENST00000489671.1:c.733-24T>C
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000315668
  ensembl transcript: ENST00000317104
  gene symbol: TFDP2
  hgvsc: ENST00000317104.7:c.505-24T>C
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417384
  ensembl transcript: ENST00000487734
  gene symbol: TFDP2
  hgvsc: ENST00000487734.1:c.*623-24T>C
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417726
  ensembl transcript: ENST00000467667
  gene symbol: TFDP2
  hgvsc: ENST00000467667.1:c.553-24T>C
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417585
  ensembl transcript: ENST00000479040
  gene symbol: TFDP2
  hgvsc: ENST00000479040.1:c.550-24T>C
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000309622
  ensembl transcript: ENST00000310282
  gene symbol: TFDP2
  hgvsc: ENST00000310282.6:c.553-24T>C
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000418590
  ensembl transcript: ENST00000467072
  gene symbol: TFDP2
  hgvsc: ENST00000467072.1:c.553-24T>C
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000439782
  ensembl transcript: ENST00000499676
  gene symbol: TFDP2
  hgvsc: ENST00000499676.2:c.553-24T>C
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000419036
  ensembl transcript: ENST00000495310
  gene symbol: TFDP2
  hgvsc: ENST00000495310.1:c.442-24T>C
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000418971
  ensembl transcript: ENST00000477292
  gene symbol: TFDP2
  hgvsc: ENST00000477292.1:c.325-24T>C
  variant of: http://identifiers.org/hgnc/11751
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2439
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3439
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9491
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 938
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8178
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1478
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1516
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2230
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6877
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5297
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 716
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4064
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: Latino
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: East Asian
reference allele: A
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff

3-141682830-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 141682830
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 141682830
    reference: chr 3
allele count: 1
allele frequency: 8.391232839928842e-6
allele num: 119172
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000420599
  ensembl transcript: ENST00000486111
  gene symbol: TFDP2
  hgvsc: ENST00000486111.1:c.553-25A>G
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000439782
  ensembl transcript: ENST00000499676
  gene symbol: TFDP2
  hgvsc: ENST00000499676.2:c.553-25A>G
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000381078
  ensembl transcript: ENST00000397991
  gene symbol: TFDP2
  hgvsc: ENST00000397991.4:c.649-25A>G
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417726
  ensembl transcript: ENST00000467667
  gene symbol: TFDP2
  hgvsc: ENST00000467667.1:c.553-25A>G
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000418590
  ensembl transcript: ENST00000467072
  gene symbol: TFDP2
  hgvsc: ENST00000467072.1:c.553-25A>G
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417220
  ensembl transcript: ENST00000497579
  gene symbol: TFDP2
  hgvsc: ENST00000497579.1:c.550-25A>G
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000420616
  ensembl transcript: ENST00000489671
  gene symbol: TFDP2
  hgvsc: ENST00000489671.1:c.733-25A>G
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000315668
  ensembl transcript: ENST00000317104
  gene symbol: TFDP2
  hgvsc: ENST00000317104.7:c.505-25A>G
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417585
  ensembl transcript: ENST00000479040
  gene symbol: TFDP2
  hgvsc: ENST00000479040.1:c.550-25A>G
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000309622
  ensembl transcript: ENST00000310282
  gene symbol: TFDP2
  hgvsc: ENST00000310282.6:c.553-25A>G
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000418122
  ensembl transcript: ENST00000478006
  gene symbol: TFDP2
  hgvsc: ENST00000478006.1:c.475-25A>G
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000418971
  ensembl transcript: ENST00000477292
  gene symbol: TFDP2
  hgvsc: ENST00000477292.1:c.325-25A>G
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000419036
  ensembl transcript: ENST00000495310
  gene symbol: TFDP2
  hgvsc: ENST00000495310.1:c.442-25A>G
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417384
  ensembl transcript: ENST00000487734
  gene symbol: TFDP2
  hgvsc: ENST00000487734.1:c.*623-25A>G
  variant of: http://identifiers.org/hgnc/11751
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1478
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2229
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3934
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8690
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9488
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 938
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5297
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 870
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1332
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 696
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8161
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2195
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
population: South Asian
reference allele: T
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: QD

3-141682840-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 141682840
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 141682840
    reference: chr 3
allele count: 2
allele frequency: 1.683785149014986e-5
allele num: 118780
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000418122
  ensembl transcript: ENST00000478006
  gene symbol: TFDP2
  hgvsc: ENST00000478006.1:c.475-35A>G
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000381078
  ensembl transcript: ENST00000397991
  gene symbol: TFDP2
  hgvsc: ENST00000397991.4:c.649-35A>G
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417585
  ensembl transcript: ENST00000479040
  gene symbol: TFDP2
  hgvsc: ENST00000479040.1:c.550-35A>G
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417384
  ensembl transcript: ENST00000487734
  gene symbol: TFDP2
  hgvsc: ENST00000487734.1:c.*623-35A>G
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417220
  ensembl transcript: ENST00000497579
  gene symbol: TFDP2
  hgvsc: ENST00000497579.1:c.550-35A>G
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000418971
  ensembl transcript: ENST00000477292
  gene symbol: TFDP2
  hgvsc: ENST00000477292.1:c.325-35A>G
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000439782
  ensembl transcript: ENST00000499676
  gene symbol: TFDP2
  hgvsc: ENST00000499676.2:c.553-35A>G
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000419036
  ensembl transcript: ENST00000495310
  gene symbol: TFDP2
  hgvsc: ENST00000495310.1:c.442-35A>G
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000418590
  ensembl transcript: ENST00000467072
  gene symbol: TFDP2
  hgvsc: ENST00000467072.1:c.553-35A>G
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000309622
  ensembl transcript: ENST00000310282
  gene symbol: TFDP2
  hgvsc: ENST00000310282.6:c.553-35A>G
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000420616
  ensembl transcript: ENST00000489671
  gene symbol: TFDP2
  hgvsc: ENST00000489671.1:c.733-35A>G
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000315668
  ensembl transcript: ENST00000317104
  gene symbol: TFDP2
  hgvsc: ENST00000317104.7:c.505-35A>G
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417726
  ensembl transcript: ENST00000467667
  gene symbol: TFDP2
  hgvsc: ENST00000467667.1:c.553-35A>G
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000420599
  ensembl transcript: ENST00000486111
  gene symbol: TFDP2
  hgvsc: ENST00000486111.1:c.553-35A>G
  variant of: http://identifiers.org/hgnc/11751
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2229
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 817
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 726
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1477
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2195
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8016
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2833
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3440
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 905
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 557
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5291
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9462
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: T
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum

3-141682843-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 141682843
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 141682843
    reference: chr 3
allele count: 1
allele frequency: 8.429428821903027e-6
allele num: 118632
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000420616
  ensembl transcript: ENST00000489671
  gene symbol: TFDP2
  hgvsc: ENST00000489671.1:c.733-38T>C
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000381078
  ensembl transcript: ENST00000397991
  gene symbol: TFDP2
  hgvsc: ENST00000397991.4:c.649-38T>C
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000418971
  ensembl transcript: ENST00000477292
  gene symbol: TFDP2
  hgvsc: ENST00000477292.1:c.325-38T>C
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417726
  ensembl transcript: ENST00000467667
  gene symbol: TFDP2
  hgvsc: ENST00000467667.1:c.553-38T>C
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417384
  ensembl transcript: ENST00000487734
  gene symbol: TFDP2
  hgvsc: ENST00000487734.1:c.*623-38T>C
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417585
  ensembl transcript: ENST00000479040
  gene symbol: TFDP2
  hgvsc: ENST00000479040.1:c.550-38T>C
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000315668
  ensembl transcript: ENST00000317104
  gene symbol: TFDP2
  hgvsc: ENST00000317104.7:c.505-38T>C
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000418590
  ensembl transcript: ENST00000467072
  gene symbol: TFDP2
  hgvsc: ENST00000467072.1:c.553-38T>C
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000420599
  ensembl transcript: ENST00000486111
  gene symbol: TFDP2
  hgvsc: ENST00000486111.1:c.553-38T>C
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000418122
  ensembl transcript: ENST00000478006
  gene symbol: TFDP2
  hgvsc: ENST00000478006.1:c.475-38T>C
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000419036
  ensembl transcript: ENST00000495310
  gene symbol: TFDP2
  hgvsc: ENST00000495310.1:c.442-38T>C
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000439782
  ensembl transcript: ENST00000499676
  gene symbol: TFDP2
  hgvsc: ENST00000499676.2:c.553-38T>C
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417220
  ensembl transcript: ENST00000497579
  gene symbol: TFDP2
  hgvsc: ENST00000497579.1:c.550-38T>C
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000309622
  ensembl transcript: ENST00000310282
  gene symbol: TFDP2
  hgvsc: ENST00000310282.6:c.553-38T>C
  variant of: http://identifiers.org/hgnc/11751
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2227
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3439
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6865
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 938
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1477
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 557
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9448
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2889
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1690
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7936
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 764
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2195
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
reference allele: A
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum

3-141682847-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 141682847
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 141682847
    reference: chr 3
allele count: 1
allele frequency: 8.446659346228567e-6
allele num: 118390
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417726
  ensembl transcript: ENST00000467667
  gene symbol: TFDP2
  hgvsc: ENST00000467667.1:c.553-42C>T
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000420599
  ensembl transcript: ENST00000486111
  gene symbol: TFDP2
  hgvsc: ENST00000486111.1:c.553-42C>T
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417585
  ensembl transcript: ENST00000479040
  gene symbol: TFDP2
  hgvsc: ENST00000479040.1:c.550-42C>T
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417220
  ensembl transcript: ENST00000497579
  gene symbol: TFDP2
  hgvsc: ENST00000497579.1:c.550-42C>T
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000418590
  ensembl transcript: ENST00000467072
  gene symbol: TFDP2
  hgvsc: ENST00000467072.1:c.553-42C>T
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000439782
  ensembl transcript: ENST00000499676
  gene symbol: TFDP2
  hgvsc: ENST00000499676.2:c.553-42C>T
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000419036
  ensembl transcript: ENST00000495310
  gene symbol: TFDP2
  hgvsc: ENST00000495310.1:c.442-42C>T
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417384
  ensembl transcript: ENST00000487734
  gene symbol: TFDP2
  hgvsc: ENST00000487734.1:c.*623-42C>T
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000315668
  ensembl transcript: ENST00000317104
  gene symbol: TFDP2
  hgvsc: ENST00000317104.7:c.505-42C>T
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000418122
  ensembl transcript: ENST00000478006
  gene symbol: TFDP2
  hgvsc: ENST00000478006.1:c.475-42C>T
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000418971
  ensembl transcript: ENST00000477292
  gene symbol: TFDP2
  hgvsc: ENST00000477292.1:c.325-42C>T
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000309622
  ensembl transcript: ENST00000310282
  gene symbol: TFDP2
  hgvsc: ENST00000310282.6:c.553-42C>T
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000381078
  ensembl transcript: ENST00000397991
  gene symbol: TFDP2
  hgvsc: ENST00000397991.4:c.649-42C>T
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000420616
  ensembl transcript: ENST00000489671
  gene symbol: TFDP2
  hgvsc: ENST00000489671.1:c.733-42C>T
  variant of: http://identifiers.org/hgnc/11751
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3439
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 829
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3183
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 996
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7727
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2139
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2195
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9389
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2815
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2227
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 938
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum

3-141682852-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 141682852
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 141682852
    reference: chr 3
allele count: 1
allele frequency: 8.486082824168364e-6
allele num: 117840
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000420599
  ensembl transcript: ENST00000486111
  gene symbol: TFDP2
  hgvsc: ENST00000486111.1:c.553-47A>T
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417220
  ensembl transcript: ENST00000497579
  gene symbol: TFDP2
  hgvsc: ENST00000497579.1:c.550-47A>T
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000420616
  ensembl transcript: ENST00000489671
  gene symbol: TFDP2
  hgvsc: ENST00000489671.1:c.733-47A>T
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000315668
  ensembl transcript: ENST00000317104
  gene symbol: TFDP2
  hgvsc: ENST00000317104.7:c.505-47A>T
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000381078
  ensembl transcript: ENST00000397991
  gene symbol: TFDP2
  hgvsc: ENST00000397991.4:c.649-47A>T
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000418590
  ensembl transcript: ENST00000467072
  gene symbol: TFDP2
  hgvsc: ENST00000467072.1:c.553-47A>T
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417384
  ensembl transcript: ENST00000487734
  gene symbol: TFDP2
  hgvsc: ENST00000487734.1:c.*623-47A>T
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000309622
  ensembl transcript: ENST00000310282
  gene symbol: TFDP2
  hgvsc: ENST00000310282.6:c.553-47A>T
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417726
  ensembl transcript: ENST00000467667
  gene symbol: TFDP2
  hgvsc: ENST00000467667.1:c.553-47A>T
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000418122
  ensembl transcript: ENST00000478006
  gene symbol: TFDP2
  hgvsc: ENST00000478006.1:c.475-47A>T
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000418971
  ensembl transcript: ENST00000477292
  gene symbol: TFDP2
  hgvsc: ENST00000477292.1:c.325-47A>T
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000419036
  ensembl transcript: ENST00000495310
  gene symbol: TFDP2
  hgvsc: ENST00000495310.1:c.442-47A>T
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000439782
  ensembl transcript: ENST00000499676
  gene symbol: TFDP2
  hgvsc: ENST00000499676.2:c.553-47A>T
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417585
  ensembl transcript: ENST00000479040
  gene symbol: TFDP2
  hgvsc: ENST00000479040.1:c.550-47A>T
  variant of: http://identifiers.org/hgnc/11751
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5287
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1206
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2657
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2997
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1477
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2195
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3438
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8621
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2227
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9165
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7065
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1935
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
population: Other
population: African
population: European (Non-Finnish)
reference allele: T
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: DP

3-141688871-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 141688871
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 141688871
    reference: chr 3
allele count: 22
allele frequency: 1.822036705757636e-4
allele num: 120744
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417220
  ensembl transcript: ENST00000497579
  gene symbol: TFDP2
  hgvsc: ENST00000497579.1:c.549+44C>G
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000315668
  ensembl transcript: ENST00000317104
  gene symbol: TFDP2
  hgvsc: ENST00000317104.7:c.504+44C>G
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417585
  ensembl transcript: ENST00000479040
  gene symbol: TFDP2
  hgvsc: ENST00000479040.1:c.549+44C>G
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000309622
  ensembl transcript: ENST00000310282
  gene symbol: TFDP2
  hgvsc: ENST00000310282.6:c.552+44C>G
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000418590
  ensembl transcript: ENST00000467072
  gene symbol: TFDP2
  hgvsc: ENST00000467072.1:c.552+44C>G
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000418971
  ensembl transcript: ENST00000477292
  gene symbol: TFDP2
  hgvsc: ENST00000477292.1:c.324+44C>G
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000420599
  ensembl transcript: ENST00000486111
  gene symbol: TFDP2
  hgvsc: ENST00000486111.1:c.552+44C>G
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000381078
  ensembl transcript: ENST00000397991
  gene symbol: TFDP2
  hgvsc: ENST00000397991.4:c.648+44C>G
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000418122
  ensembl transcript: ENST00000478006
  gene symbol: TFDP2
  hgvsc: ENST00000478006.1:c.474+44C>G
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417726
  ensembl transcript: ENST00000467667
  gene symbol: TFDP2
  hgvsc: ENST00000467667.1:c.552+44C>G
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417384
  ensembl transcript: ENST00000487734
  gene symbol: TFDP2
  hgvsc: ENST00000487734.1:c.*622+44C>G
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000439782
  ensembl transcript: ENST00000499676
  gene symbol: TFDP2
  hgvsc: ENST00000499676.2:c.552+44C>G
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000419036
  ensembl transcript: ENST00000495310
  gene symbol: TFDP2
  hgvsc: ENST00000495310.1:c.441+44C>G
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000420616
  ensembl transcript: ENST00000489671
  gene symbol: TFDP2
  hgvsc: ENST00000489671.1:c.732+44C>G
  variant of: http://identifiers.org/hgnc/11751
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1762
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7223
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3111
  bin: 9.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 9837
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 762
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2318
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8713
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1640
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5239
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 522
  bin: 8.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ

3-141688875-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 141688875
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 141688875
    reference: chr 3
allele count: 1
allele frequency: 8.281162012653616e-6
allele num: 120756
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000418590
  ensembl transcript: ENST00000467072
  gene symbol: TFDP2
  hgvsc: ENST00000467072.1:c.552+40T>C
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417220
  ensembl transcript: ENST00000497579
  gene symbol: TFDP2
  hgvsc: ENST00000497579.1:c.549+40T>C
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000418122
  ensembl transcript: ENST00000478006
  gene symbol: TFDP2
  hgvsc: ENST00000478006.1:c.474+40T>C
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417726
  ensembl transcript: ENST00000467667
  gene symbol: TFDP2
  hgvsc: ENST00000467667.1:c.552+40T>C
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000439782
  ensembl transcript: ENST00000499676
  gene symbol: TFDP2
  hgvsc: ENST00000499676.2:c.552+40T>C
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000381078
  ensembl transcript: ENST00000397991
  gene symbol: TFDP2
  hgvsc: ENST00000397991.4:c.648+40T>C
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000315668
  ensembl transcript: ENST00000317104
  gene symbol: TFDP2
  hgvsc: ENST00000317104.7:c.504+40T>C
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000418971
  ensembl transcript: ENST00000477292
  gene symbol: TFDP2
  hgvsc: ENST00000477292.1:c.324+40T>C
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000420616
  ensembl transcript: ENST00000489671
  gene symbol: TFDP2
  hgvsc: ENST00000489671.1:c.732+40T>C
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000309622
  ensembl transcript: ENST00000310282
  gene symbol: TFDP2
  hgvsc: ENST00000310282.6:c.552+40T>C
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000420599
  ensembl transcript: ENST00000486111
  gene symbol: TFDP2
  hgvsc: ENST00000486111.1:c.552+40T>C
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000419036
  ensembl transcript: ENST00000495310
  gene symbol: TFDP2
  hgvsc: ENST00000495310.1:c.441+40T>C
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417585
  ensembl transcript: ENST00000479040
  gene symbol: TFDP2
  hgvsc: ENST00000479040.1:c.549+40T>C
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417384
  ensembl transcript: ENST00000487734
  gene symbol: TFDP2
  hgvsc: ENST00000487734.1:c.*622+40T>C
  variant of: http://identifiers.org/hgnc/11751
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3286
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9835
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1759
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 613
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1022
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12357
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1330
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 520
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5236
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
population: African
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: QD

http://identifiers.org/exac.variant/3-141688881-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 141688881
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 141688881
    reference: chr 3
allele count: 1
allele frequency: 8.281162012653616e-6
allele num: 120756
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000419036
  ensembl transcript: ENST00000495310
  gene symbol: TFDP2
  hgvsc: ENST00000495310.1:c.441+34T>G
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000439782
  ensembl transcript: ENST00000499676
  gene symbol: TFDP2
  hgvsc: ENST00000499676.2:c.552+34T>G
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000418971
  ensembl transcript: ENST00000477292
  gene symbol: TFDP2
  hgvsc: ENST00000477292.1:c.324+34T>G
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000418590
  ensembl transcript: ENST00000467072
  gene symbol: TFDP2
  hgvsc: ENST00000467072.1:c.552+34T>G
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417384
  ensembl transcript: ENST00000487734
  gene symbol: TFDP2
  hgvsc: ENST00000487734.1:c.*622+34T>G
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000309622
  ensembl transcript: ENST00000310282
  gene symbol: TFDP2
  hgvsc: ENST00000310282.6:c.552+34T>G
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000420616
  ensembl transcript: ENST00000489671
  gene symbol: TFDP2
  hgvsc: ENST00000489671.1:c.732+34T>G
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417726
  ensembl transcript: ENST00000467667
  gene symbol: TFDP2
  hgvsc: ENST00000467667.1:c.552+34T>G
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000420599
  ensembl transcript: ENST00000486111
  gene symbol: TFDP2
  hgvsc: ENST00000486111.1:c.552+34T>G
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000381078
  ensembl transcript: ENST00000397991
  gene symbol: TFDP2
  hgvsc: ENST00000397991.4:c.648+34T>G
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000418122
  ensembl transcript: ENST00000478006
  gene symbol: TFDP2
  hgvsc: ENST00000478006.1:c.474+34T>G
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000315668
  ensembl transcript: ENST00000317104
  gene symbol: TFDP2
  hgvsc: ENST00000317104.7:c.504+34T>G
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417585
  ensembl transcript: ENST00000479040
  gene symbol: TFDP2
  hgvsc: ENST00000479040.1:c.549+34T>G
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417220
  ensembl transcript: ENST00000497579
  gene symbol: TFDP2
  hgvsc: ENST00000497579.1:c.549+34T>G
  variant of: http://identifiers.org/hgnc/11751
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8784
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1658
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 520
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3107
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9836
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1022
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7233
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12380
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 614
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
reference allele: A
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD

3-141688881-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 141688881
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 141688881
    reference: chr 3
allele count: 1
allele frequency: 8.281162012653616e-6
allele num: 120756
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000439782
  ensembl transcript: ENST00000499676
  gene symbol: TFDP2
  hgvsc: ENST00000499676.2:c.552+34T>C
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000420599
  ensembl transcript: ENST00000486111
  gene symbol: TFDP2
  hgvsc: ENST00000486111.1:c.552+34T>C
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000315668
  ensembl transcript: ENST00000317104
  gene symbol: TFDP2
  hgvsc: ENST00000317104.7:c.504+34T>C
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000418971
  ensembl transcript: ENST00000477292
  gene symbol: TFDP2
  hgvsc: ENST00000477292.1:c.324+34T>C
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000419036
  ensembl transcript: ENST00000495310
  gene symbol: TFDP2
  hgvsc: ENST00000495310.1:c.441+34T>C
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000309622
  ensembl transcript: ENST00000310282
  gene symbol: TFDP2
  hgvsc: ENST00000310282.6:c.552+34T>C
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417726
  ensembl transcript: ENST00000467667
  gene symbol: TFDP2
  hgvsc: ENST00000467667.1:c.552+34T>C
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000381078
  ensembl transcript: ENST00000397991
  gene symbol: TFDP2
  hgvsc: ENST00000397991.4:c.648+34T>C
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417384
  ensembl transcript: ENST00000487734
  gene symbol: TFDP2
  hgvsc: ENST00000487734.1:c.*622+34T>C
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000418122
  ensembl transcript: ENST00000478006
  gene symbol: TFDP2
  hgvsc: ENST00000478006.1:c.474+34T>C
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000420616
  ensembl transcript: ENST00000489671
  gene symbol: TFDP2
  hgvsc: ENST00000489671.1:c.732+34T>C
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000418590
  ensembl transcript: ENST00000467072
  gene symbol: TFDP2
  hgvsc: ENST00000467072.1:c.552+34T>C
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417585
  ensembl transcript: ENST00000479040
  gene symbol: TFDP2
  hgvsc: ENST00000479040.1:c.549+34T>C
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417220
  ensembl transcript: ENST00000497579
  gene symbol: TFDP2
  hgvsc: ENST00000497579.1:c.549+34T>C
  variant of: http://identifiers.org/hgnc/11751
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1658
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 614
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9836
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 520
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2315
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8784
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12380
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5237
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1330
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: Latino
population: East Asian
population: African
reference allele: A
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP

3-141688883-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 141688883
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 141688883
    reference: chr 3
allele count: 9
allele frequency: 7.452675510508272e-5
allele num: 120762
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000420616
  ensembl transcript: ENST00000489671
  gene symbol: TFDP2
  hgvsc: ENST00000489671.1:c.732+32C>T
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000315668
  ensembl transcript: ENST00000317104
  gene symbol: TFDP2
  hgvsc: ENST00000317104.7:c.504+32C>T
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000420599
  ensembl transcript: ENST00000486111
  gene symbol: TFDP2
  hgvsc: ENST00000486111.1:c.552+32C>T
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000309622
  ensembl transcript: ENST00000310282
  gene symbol: TFDP2
  hgvsc: ENST00000310282.6:c.552+32C>T
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417220
  ensembl transcript: ENST00000497579
  gene symbol: TFDP2
  hgvsc: ENST00000497579.1:c.549+32C>T
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000419036
  ensembl transcript: ENST00000495310
  gene symbol: TFDP2
  hgvsc: ENST00000495310.1:c.441+32C>T
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000418971
  ensembl transcript: ENST00000477292
  gene symbol: TFDP2
  hgvsc: ENST00000477292.1:c.324+32C>T
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000418122
  ensembl transcript: ENST00000478006
  gene symbol: TFDP2
  hgvsc: ENST00000478006.1:c.474+32C>T
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417384
  ensembl transcript: ENST00000487734
  gene symbol: TFDP2
  hgvsc: ENST00000487734.1:c.*622+32C>T
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417585
  ensembl transcript: ENST00000479040
  gene symbol: TFDP2
  hgvsc: ENST00000479040.1:c.549+32C>T
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000418590
  ensembl transcript: ENST00000467072
  gene symbol: TFDP2
  hgvsc: ENST00000467072.1:c.552+32C>T
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417726
  ensembl transcript: ENST00000467667
  gene symbol: TFDP2
  hgvsc: ENST00000467667.1:c.552+32C>T
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000381078
  ensembl transcript: ENST00000397991
  gene symbol: TFDP2
  hgvsc: ENST00000397991.4:c.648+32C>T
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000439782
  ensembl transcript: ENST00000499676
  gene symbol: TFDP2
  hgvsc: ENST00000499676.2:c.552+32C>T
  variant of: http://identifiers.org/hgnc/11751
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7233
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1331
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12378
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1024
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1759
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 764
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 612
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3285
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9833
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8811
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: East Asian
population: European (Finnish)
population: African
population: Other
population: South Asian
reference allele: G
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff

3-141688889-TA-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 141688889
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 141688888
    reference: chr 3
allele count: 1
allele frequency: 8.281024859636628e-6
allele num: 120758
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417585
  ensembl transcript: ENST00000479040
  gene symbol: TFDP2
  hgvsc: ENST00000479040.1:c.549+25delT
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000420599
  ensembl transcript: ENST00000486111
  gene symbol: TFDP2
  hgvsc: ENST00000486111.1:c.552+25delT
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000309622
  ensembl transcript: ENST00000310282
  gene symbol: TFDP2
  hgvsc: ENST00000310282.6:c.552+25delT
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000419036
  ensembl transcript: ENST00000495310
  gene symbol: TFDP2
  hgvsc: ENST00000495310.1:c.441+25delT
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417726
  ensembl transcript: ENST00000467667
  gene symbol: TFDP2
  hgvsc: ENST00000467667.1:c.552+25delT
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417384
  ensembl transcript: ENST00000487734
  gene symbol: TFDP2
  hgvsc: ENST00000487734.1:c.*622+25delT
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000439782
  ensembl transcript: ENST00000499676
  gene symbol: TFDP2
  hgvsc: ENST00000499676.2:c.552+25delT
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000381078
  ensembl transcript: ENST00000397991
  gene symbol: TFDP2
  hgvsc: ENST00000397991.4:c.648+25delT
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417220
  ensembl transcript: ENST00000497579
  gene symbol: TFDP2
  hgvsc: ENST00000497579.1:c.549+25delT
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000418590
  ensembl transcript: ENST00000467072
  gene symbol: TFDP2
  hgvsc: ENST00000467072.1:c.552+25delT
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000315668
  ensembl transcript: ENST00000317104
  gene symbol: TFDP2
  hgvsc: ENST00000317104.7:c.504+25delT
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000418122
  ensembl transcript: ENST00000478006
  gene symbol: TFDP2
  hgvsc: ENST00000478006.1:c.474+25delT
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000420616
  ensembl transcript: ENST00000489671
  gene symbol: TFDP2
  hgvsc: ENST00000489671.1:c.732+25delT
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000418971
  ensembl transcript: ENST00000477292
  gene symbol: TFDP2
  hgvsc: ENST00000477292.1:c.324+25delT
  variant of: http://identifiers.org/hgnc/11751
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3107
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2314
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8819
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9834
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1663
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1760
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 612
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1330
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5237
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
population: Other
reference allele: TA
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD

3-141688891-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 141688891
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 141688891
    reference: chr 3
allele count: 3
allele frequency: 2.484225170169424e-5
allele num: 120762
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000420599
  ensembl transcript: ENST00000486111
  gene symbol: TFDP2
  hgvsc: ENST00000486111.1:c.552+24T>C
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417726
  ensembl transcript: ENST00000467667
  gene symbol: TFDP2
  hgvsc: ENST00000467667.1:c.552+24T>C
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000419036
  ensembl transcript: ENST00000495310
  gene symbol: TFDP2
  hgvsc: ENST00000495310.1:c.441+24T>C
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000418122
  ensembl transcript: ENST00000478006
  gene symbol: TFDP2
  hgvsc: ENST00000478006.1:c.474+24T>C
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000420616
  ensembl transcript: ENST00000489671
  gene symbol: TFDP2
  hgvsc: ENST00000489671.1:c.732+24T>C
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417384
  ensembl transcript: ENST00000487734
  gene symbol: TFDP2
  hgvsc: ENST00000487734.1:c.*622+24T>C
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000418971
  ensembl transcript: ENST00000477292
  gene symbol: TFDP2
  hgvsc: ENST00000477292.1:c.324+24T>C
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000309622
  ensembl transcript: ENST00000310282
  gene symbol: TFDP2
  hgvsc: ENST00000310282.6:c.552+24T>C
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417220
  ensembl transcript: ENST00000497579
  gene symbol: TFDP2
  hgvsc: ENST00000497579.1:c.549+24T>C
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000439782
  ensembl transcript: ENST00000499676
  gene symbol: TFDP2
  hgvsc: ENST00000499676.2:c.552+24T>C
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000418590
  ensembl transcript: ENST00000467072
  gene symbol: TFDP2
  hgvsc: ENST00000467072.1:c.552+24T>C
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417585
  ensembl transcript: ENST00000479040
  gene symbol: TFDP2
  hgvsc: ENST00000479040.1:c.549+24T>C
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000381078
  ensembl transcript: ENST00000397991
  gene symbol: TFDP2
  hgvsc: ENST00000397991.4:c.648+24T>C
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000315668
  ensembl transcript: ENST00000317104
  gene symbol: TFDP2
  hgvsc: ENST00000317104.7:c.504+24T>C
  variant of: http://identifiers.org/hgnc/11751
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1330
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1661
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5236
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3285
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12393
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1022
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9834
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1760
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 614
  bin: 8.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: East Asian
population: Other
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
reference allele: A
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff

3-141688899-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 141688899
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 141688899
    reference: chr 3
allele count: 1
allele frequency: 8.280750567231414e-6
allele num: 120762
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000315668
  ensembl transcript: ENST00000317104
  gene symbol: TFDP2
  hgvsc: ENST00000317104.7:c.504+16T>A
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000381078
  ensembl transcript: ENST00000397991
  gene symbol: TFDP2
  hgvsc: ENST00000397991.4:c.648+16T>A
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417585
  ensembl transcript: ENST00000479040
  gene symbol: TFDP2
  hgvsc: ENST00000479040.1:c.549+16T>A
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417384
  ensembl transcript: ENST00000487734
  gene symbol: TFDP2
  hgvsc: ENST00000487734.1:c.*622+16T>A
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000420616
  ensembl transcript: ENST00000489671
  gene symbol: TFDP2
  hgvsc: ENST00000489671.1:c.732+16T>A
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000439782
  ensembl transcript: ENST00000499676
  gene symbol: TFDP2
  hgvsc: ENST00000499676.2:c.552+16T>A
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417726
  ensembl transcript: ENST00000467667
  gene symbol: TFDP2
  hgvsc: ENST00000467667.1:c.552+16T>A
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000419036
  ensembl transcript: ENST00000495310
  gene symbol: TFDP2
  hgvsc: ENST00000495310.1:c.441+16T>A
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000418122
  ensembl transcript: ENST00000478006
  gene symbol: TFDP2
  hgvsc: ENST00000478006.1:c.474+16T>A
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000418590
  ensembl transcript: ENST00000467072
  gene symbol: TFDP2
  hgvsc: ENST00000467072.1:c.552+16T>A
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000418971
  ensembl transcript: ENST00000477292
  gene symbol: TFDP2
  hgvsc: ENST00000477292.1:c.324+16T>A
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417220
  ensembl transcript: ENST00000497579
  gene symbol: TFDP2
  hgvsc: ENST00000497579.1:c.549+16T>A
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000309622
  ensembl transcript: ENST00000310282
  gene symbol: TFDP2
  hgvsc: ENST00000310282.6:c.552+16T>A
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000420599
  ensembl transcript: ENST00000486111
  gene symbol: TFDP2
  hgvsc: ENST00000486111.1:c.552+16T>A
  variant of: http://identifiers.org/hgnc/11751
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 612
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1676
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3107
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5238
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3284
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 764
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1330
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9837
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8834
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2313
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: A
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP

3-141688903-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 141688903
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 141688903
    reference: chr 3
allele count: 10181
allele frequency: 8.430911409596052e-2
allele num: 120758
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000420616
  ensembl transcript: ENST00000489671
  gene symbol: TFDP2
  hgvsc: ENST00000489671.1:c.732+12G>A
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000439782
  ensembl transcript: ENST00000499676
  gene symbol: TFDP2
  hgvsc: ENST00000499676.2:c.552+12G>A
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000309622
  ensembl transcript: ENST00000310282
  gene symbol: TFDP2
  hgvsc: ENST00000310282.6:c.552+12G>A
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417220
  ensembl transcript: ENST00000497579
  gene symbol: TFDP2
  hgvsc: ENST00000497579.1:c.549+12G>A
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000381078
  ensembl transcript: ENST00000397991
  gene symbol: TFDP2
  hgvsc: ENST00000397991.4:c.648+12G>A
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000418590
  ensembl transcript: ENST00000467072
  gene symbol: TFDP2
  hgvsc: ENST00000467072.1:c.552+12G>A
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417726
  ensembl transcript: ENST00000467667
  gene symbol: TFDP2
  hgvsc: ENST00000467667.1:c.552+12G>A
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417384
  ensembl transcript: ENST00000487734
  gene symbol: TFDP2
  hgvsc: ENST00000487734.1:c.*622+12G>A
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000419036
  ensembl transcript: ENST00000495310
  gene symbol: TFDP2
  hgvsc: ENST00000495310.1:c.441+12G>A
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000418122
  ensembl transcript: ENST00000478006
  gene symbol: TFDP2
  hgvsc: ENST00000478006.1:c.474+12G>A
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417585
  ensembl transcript: ENST00000479040
  gene symbol: TFDP2
  hgvsc: ENST00000479040.1:c.549+12G>A
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000418971
  ensembl transcript: ENST00000477292
  gene symbol: TFDP2
  hgvsc: ENST00000477292.1:c.324+12G>A
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000420599
  ensembl transcript: ENST00000486111
  gene symbol: TFDP2
  hgvsc: ENST00000486111.1:c.552+12G>A
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000315668
  ensembl transcript: ENST00000317104
  gene symbol: TFDP2
  hgvsc: ENST00000317104.7:c.504+12G>A
  variant of: http://identifiers.org/hgnc/11751
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 935
  bin: 8.25e1
  variant carriers: 589
genotype depth: GenotypeDepth
  all individuals: 1444
  bin: 5.75e1
  variant carriers: 200
genotype depth: GenotypeDepth
  all individuals: 924
  bin: 7.75e1
  variant carriers: 543
genotype depth: GenotypeDepth
  all individuals: 9252
  bin: 3.75e1
  variant carriers: 46
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 2.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1540
  bin: 2.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4230
  bin: 4.75e1
  variant carriers: 89
genotype depth: GenotypeDepth
  all individuals: 971
  bin: 8.75e1
  variant carriers: 642
genotype depth: GenotypeDepth
  all individuals: 2337
  bin: 5.25e1
  variant carriers: 134
genotype depth: GenotypeDepth
  all individuals: 8618
  bin: 2.75e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 12028
  bin: 3.25e1
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 968
  bin: 9.25e1
  variant carriers: 685
genotype depth: GenotypeDepth
  all individuals: 1076
  bin: 6.25e1
  variant carriers: 276
genotype quality: GenotypeQuality
num of homozygotes: 525
population: Latino
population: South Asian
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD

3-141688904-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 141688904
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 141688904
    reference: chr 3
allele count: 1
allele frequency: 8.280613427842734e-6
allele num: 120764
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000420599
  ensembl transcript: ENST00000486111
  gene symbol: TFDP2
  hgvsc: ENST00000486111.1:c.552+11C>G
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000420616
  ensembl transcript: ENST00000489671
  gene symbol: TFDP2
  hgvsc: ENST00000489671.1:c.732+11C>G
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000418590
  ensembl transcript: ENST00000467072
  gene symbol: TFDP2
  hgvsc: ENST00000467072.1:c.552+11C>G
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417220
  ensembl transcript: ENST00000497579
  gene symbol: TFDP2
  hgvsc: ENST00000497579.1:c.549+11C>G
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417384
  ensembl transcript: ENST00000487734
  gene symbol: TFDP2
  hgvsc: ENST00000487734.1:c.*622+11C>G
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000418971
  ensembl transcript: ENST00000477292
  gene symbol: TFDP2
  hgvsc: ENST00000477292.1:c.324+11C>G
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417726
  ensembl transcript: ENST00000467667
  gene symbol: TFDP2
  hgvsc: ENST00000467667.1:c.552+11C>G
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000381078
  ensembl transcript: ENST00000397991
  gene symbol: TFDP2
  hgvsc: ENST00000397991.4:c.648+11C>G
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000309622
  ensembl transcript: ENST00000310282
  gene symbol: TFDP2
  hgvsc: ENST00000310282.6:c.552+11C>G
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000439782
  ensembl transcript: ENST00000499676
  gene symbol: TFDP2
  hgvsc: ENST00000499676.2:c.552+11C>G
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000315668
  ensembl transcript: ENST00000317104
  gene symbol: TFDP2
  hgvsc: ENST00000317104.7:c.504+11C>G
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000419036
  ensembl transcript: ENST00000495310
  gene symbol: TFDP2
  hgvsc: ENST00000495310.1:c.441+11C>G
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417585
  ensembl transcript: ENST00000479040
  gene symbol: TFDP2
  hgvsc: ENST00000479040.1:c.549+11C>G
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000418122
  ensembl transcript: ENST00000478006
  gene symbol: TFDP2
  hgvsc: ENST00000478006.1:c.474+11C>G
  variant of: http://identifiers.org/hgnc/11751
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5473
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10092
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2263
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 609
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8848
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1588
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 807
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3467
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1609
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: G
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: DP

3-141688908-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 141688908
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 141688908
    reference: chr 3
allele count: 1
allele frequency: 8.280476292996373e-6
allele num: 120766
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000420616
  ensembl transcript: ENST00000489671
  gene symbol: TFDP2
  hgvsc: ENST00000489671.1:c.732+7A>T
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000418122
  ensembl transcript: ENST00000478006
  gene symbol: TFDP2
  hgvsc: ENST00000478006.1:c.474+7A>T
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000419036
  ensembl transcript: ENST00000495310
  gene symbol: TFDP2
  hgvsc: ENST00000495310.1:c.441+7A>T
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417726
  ensembl transcript: ENST00000467667
  gene symbol: TFDP2
  hgvsc: ENST00000467667.1:c.552+7A>T
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417384
  ensembl transcript: ENST00000487734
  gene symbol: TFDP2
  hgvsc: ENST00000487734.1:c.*622+7A>T
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000418590
  ensembl transcript: ENST00000467072
  gene symbol: TFDP2
  hgvsc: ENST00000467072.1:c.552+7A>T
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000381078
  ensembl transcript: ENST00000397991
  gene symbol: TFDP2
  hgvsc: ENST00000397991.4:c.648+7A>T
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000439782
  ensembl transcript: ENST00000499676
  gene symbol: TFDP2
  hgvsc: ENST00000499676.2:c.552+7A>T
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000315668
  ensembl transcript: ENST00000317104
  gene symbol: TFDP2
  hgvsc: ENST00000317104.7:c.504+7A>T
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000420599
  ensembl transcript: ENST00000486111
  gene symbol: TFDP2
  hgvsc: ENST00000486111.1:c.552+7A>T
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000309622
  ensembl transcript: ENST00000310282
  gene symbol: TFDP2
  hgvsc: ENST00000310282.6:c.552+7A>T
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000418971
  ensembl transcript: ENST00000477292
  gene symbol: TFDP2
  hgvsc: ENST00000477292.1:c.324+7A>T
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417585
  ensembl transcript: ENST00000479040
  gene symbol: TFDP2
  hgvsc: ENST00000479040.1:c.549+7A>T
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417220
  ensembl transcript: ENST00000497579
  gene symbol: TFDP2
  hgvsc: ENST00000497579.1:c.549+7A>T
  variant of: http://identifiers.org/hgnc/11751
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 807
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1117
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1594
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5472
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7633
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2263
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 609
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.732+7A>T
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: African
population: Other
population: Latino
reference allele: T
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: VQSLOD

3-141688909-CT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 141688909
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 141688908
    reference: chr 3
allele count: 1
allele frequency: 8.280613427842734e-6
allele num: 120764
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000420616
  ensembl transcript: ENST00000489671
  gene symbol: TFDP2
  hgvsc: ENST00000489671.1:c.732+5delA
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417384
  ensembl transcript: ENST00000487734
  gene symbol: TFDP2
  hgvsc: ENST00000487734.1:c.*622+5delA
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000420599
  ensembl transcript: ENST00000486111
  gene symbol: TFDP2
  hgvsc: ENST00000486111.1:c.552+5delA
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000309622
  ensembl transcript: ENST00000310282
  gene symbol: TFDP2
  hgvsc: ENST00000310282.6:c.552+5delA
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000418590
  ensembl transcript: ENST00000467072
  gene symbol: TFDP2
  hgvsc: ENST00000467072.1:c.552+5delA
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000439782
  ensembl transcript: ENST00000499676
  gene symbol: TFDP2
  hgvsc: ENST00000499676.2:c.552+5delA
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000381078
  ensembl transcript: ENST00000397991
  gene symbol: TFDP2
  hgvsc: ENST00000397991.4:c.648+5delA
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417726
  ensembl transcript: ENST00000467667
  gene symbol: TFDP2
  hgvsc: ENST00000467667.1:c.552+5delA
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000315668
  ensembl transcript: ENST00000317104
  gene symbol: TFDP2
  hgvsc: ENST00000317104.7:c.504+5delA
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000418971
  ensembl transcript: ENST00000477292
  gene symbol: TFDP2
  hgvsc: ENST00000477292.1:c.324+5delA
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000418122
  ensembl transcript: ENST00000478006
  gene symbol: TFDP2
  hgvsc: ENST00000478006.1:c.474+5delA
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000419036
  ensembl transcript: ENST00000495310
  gene symbol: TFDP2
  hgvsc: ENST00000495310.1:c.441+5delA
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417220
  ensembl transcript: ENST00000497579
  gene symbol: TFDP2
  hgvsc: ENST00000497579.1:c.549+5delA
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417585
  ensembl transcript: ENST00000479040
  gene symbol: TFDP2
  hgvsc: ENST00000479040.1:c.549+5delA
  variant of: http://identifiers.org/hgnc/11751
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5472
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8850
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 807
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1609
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12591
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1116
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3466
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10093
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.732+5delA
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
reference allele: CT
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum

3-141688912-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 141688912
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 141688912
    reference: chr 3
allele count: 4
allele frequency: 3.312190517198549e-5
allele num: 120766
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000381078
  ensembl transcript: ENST00000397991
  gene symbol: TFDP2
  hgvsc: ENST00000397991.4:c.648+3A>G
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000439782
  ensembl transcript: ENST00000499676
  gene symbol: TFDP2
  hgvsc: ENST00000499676.2:c.552+3A>G
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000418122
  ensembl transcript: ENST00000478006
  gene symbol: TFDP2
  hgvsc: ENST00000478006.1:c.474+3A>G
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000420599
  ensembl transcript: ENST00000486111
  gene symbol: TFDP2
  hgvsc: ENST00000486111.1:c.552+3A>G
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417585
  ensembl transcript: ENST00000479040
  gene symbol: TFDP2
  hgvsc: ENST00000479040.1:c.549+3A>G
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000420616
  ensembl transcript: ENST00000489671
  gene symbol: TFDP2
  hgvsc: ENST00000489671.1:c.732+3A>G
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000315668
  ensembl transcript: ENST00000317104
  gene symbol: TFDP2
  hgvsc: ENST00000317104.7:c.504+3A>G
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000309622
  ensembl transcript: ENST00000310282
  gene symbol: TFDP2
  hgvsc: ENST00000310282.6:c.552+3A>G
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417726
  ensembl transcript: ENST00000467667
  gene symbol: TFDP2
  hgvsc: ENST00000467667.1:c.552+3A>G
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000418971
  ensembl transcript: ENST00000477292
  gene symbol: TFDP2
  hgvsc: ENST00000477292.1:c.324+3A>G
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417384
  ensembl transcript: ENST00000487734
  gene symbol: TFDP2
  hgvsc: ENST00000487734.1:c.*622+3A>G
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000419036
  ensembl transcript: ENST00000495310
  gene symbol: TFDP2
  hgvsc: ENST00000495310.1:c.441+3A>G
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417220
  ensembl transcript: ENST00000497579
  gene symbol: TFDP2
  hgvsc: ENST00000497579.1:c.549+3A>G
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000418590
  ensembl transcript: ENST00000467072
  gene symbol: TFDP2
  hgvsc: ENST00000467072.1:c.552+3A>G
  variant of: http://identifiers.org/hgnc/11751
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5472
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 807
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1609
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2263
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10091
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12592
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.732+3A>G
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: T
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP

3-141688917-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 141688917
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 141688917
    reference: chr 3
allele count: 9
allele frequency: 7.452428663696736e-5
allele num: 120766
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000420616
  ensembl transcript: ENST00000489671
  gene symbol: TFDP2
  hgvsc: ENST00000489671.1:c.730C>G
  hgvsp: ENSP00000420616.1:p.Gln244Glu
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000309622
  ensembl transcript: ENST00000310282
  gene symbol: TFDP2
  hgvsc: ENST00000310282.6:c.550C>G
  hgvsp: ENSP00000309622.6:p.Gln184Glu
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000418122
  ensembl transcript: ENST00000478006
  gene symbol: TFDP2
  hgvsc: ENST00000478006.1:c.472C>G
  hgvsp: ENSP00000418122.1:p.Gln158Glu
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000419036
  ensembl transcript: ENST00000495310
  gene symbol: TFDP2
  hgvsc: ENST00000495310.1:c.439C>G
  hgvsp: ENSP00000419036.1:p.Gln147Glu
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000439782
  ensembl transcript: ENST00000499676
  gene symbol: TFDP2
  hgvsc: ENST00000499676.2:c.550C>G
  hgvsp: ENSP00000439782.1:p.Gln184Glu
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000418590
  ensembl transcript: ENST00000467072
  gene symbol: TFDP2
  hgvsc: ENST00000467072.1:c.550C>G
  hgvsp: ENSP00000418590.1:p.Gln184Glu
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417384
  ensembl transcript: ENST00000487734
  gene symbol: TFDP2
  hgvsc: ENST00000487734.1:c.*620C>G
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000381078
  ensembl transcript: ENST00000397991
  gene symbol: TFDP2
  hgvsc: ENST00000397991.4:c.646C>G
  hgvsp: ENSP00000381078.4:p.Gln216Glu
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417726
  ensembl transcript: ENST00000467667
  gene symbol: TFDP2
  hgvsc: ENST00000467667.1:c.550C>G
  hgvsp: ENSP00000417726.1:p.Gln184Glu
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000315668
  ensembl transcript: ENST00000317104
  gene symbol: TFDP2
  hgvsc: ENST00000317104.7:c.502C>G
  hgvsp: ENSP00000315668.7:p.Gln168Glu
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417220
  ensembl transcript: ENST00000497579
  gene symbol: TFDP2
  hgvsc: ENST00000497579.1:c.547C>G
  hgvsp: ENSP00000417220.1:p.Gln183Glu
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000418971
  ensembl transcript: ENST00000477292
  gene symbol: TFDP2
  hgvsc: ENST00000477292.1:c.322C>G
  hgvsp: ENSP00000418971.1:p.Gln108Glu
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000420599
  ensembl transcript: ENST00000486111
  gene symbol: TFDP2
  hgvsc: ENST00000486111.1:c.550C>G
  hgvsp: ENSP00000420599.1:p.Gln184Glu
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417585
  ensembl transcript: ENST00000479040
  gene symbol: TFDP2
  hgvsc: ENST00000479040.1:c.547C>G
  hgvsp: ENSP00000417585.1:p.Gln183Glu
  variant of: http://identifiers.org/hgnc/11751
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1601
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10089
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 807
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12589
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gln244Glu
num of homozygotes: 1
population: European (Finnish)
population: Other
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
reference allele: G
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: BaseQRankSum

3-141688942-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 141688942
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 141688942
    reference: chr 3
allele count: 1
allele frequency: 8.280613427842734e-6
allele num: 120764
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000420599
  ensembl transcript: ENST00000486111
  gene symbol: TFDP2
  hgvsc: ENST00000486111.1:c.525G>A
  hgvsp: ENST00000486111.1:c.525G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000418971
  ensembl transcript: ENST00000477292
  gene symbol: TFDP2
  hgvsc: ENST00000477292.1:c.297G>A
  hgvsp: ENST00000477292.1:c.297G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000418590
  ensembl transcript: ENST00000467072
  gene symbol: TFDP2
  hgvsc: ENST00000467072.1:c.525G>A
  hgvsp: ENST00000467072.1:c.525G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000439782
  ensembl transcript: ENST00000499676
  gene symbol: TFDP2
  hgvsc: ENST00000499676.2:c.525G>A
  hgvsp: ENST00000499676.2:c.525G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000309622
  ensembl transcript: ENST00000310282
  gene symbol: TFDP2
  hgvsc: ENST00000310282.6:c.525G>A
  hgvsp: ENST00000310282.6:c.525G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000315668
  ensembl transcript: ENST00000317104
  gene symbol: TFDP2
  hgvsc: ENST00000317104.7:c.477G>A
  hgvsp: ENST00000317104.7:c.477G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000419036
  ensembl transcript: ENST00000495310
  gene symbol: TFDP2
  hgvsc: ENST00000495310.1:c.414G>A
  hgvsp: ENST00000495310.1:c.414G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000381078
  ensembl transcript: ENST00000397991
  gene symbol: TFDP2
  hgvsc: ENST00000397991.4:c.621G>A
  hgvsp: ENST00000397991.4:c.621G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417726
  ensembl transcript: ENST00000467667
  gene symbol: TFDP2
  hgvsc: ENST00000467667.1:c.525G>A
  hgvsp: ENST00000467667.1:c.525G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000420616
  ensembl transcript: ENST00000489671
  gene symbol: TFDP2
  hgvsc: ENST00000489671.1:c.705G>A
  hgvsp: ENST00000489671.1:c.705G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000418122
  ensembl transcript: ENST00000478006
  gene symbol: TFDP2
  hgvsc: ENST00000478006.1:c.447G>A
  hgvsp: ENST00000478006.1:c.447G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417220
  ensembl transcript: ENST00000497579
  gene symbol: TFDP2
  hgvsc: ENST00000497579.1:c.522G>A
  hgvsp: ENST00000497579.1:c.522G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417585
  ensembl transcript: ENST00000479040
  gene symbol: TFDP2
  hgvsc: ENST00000479040.1:c.522G>A
  hgvsp: ENST00000479040.1:c.522G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417384
  ensembl transcript: ENST00000487734
  gene symbol: TFDP2
  hgvsc: ENST00000487734.1:c.*595G>A
  variant of: http://identifiers.org/hgnc/11751
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3466
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1115
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 806
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1609
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10091
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5471
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8860
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg235Arg
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Other
population: South Asian
population: African
population: Latino
reference allele: C
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: QD
site quality: MQ

3-141688943-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 141688943
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 141688943
    reference: chr 3
allele count: 1
allele frequency: 8.280476292996373e-6
allele num: 120766
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417585
  ensembl transcript: ENST00000479040
  gene symbol: TFDP2
  hgvsc: ENST00000479040.1:c.521G>A
  hgvsp: ENSP00000417585.1:p.Arg174Gln
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417384
  ensembl transcript: ENST00000487734
  gene symbol: TFDP2
  hgvsc: ENST00000487734.1:c.*594G>A
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000418971
  ensembl transcript: ENST00000477292
  gene symbol: TFDP2
  hgvsc: ENST00000477292.1:c.296G>A
  hgvsp: ENSP00000418971.1:p.Arg99Gln
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417220
  ensembl transcript: ENST00000497579
  gene symbol: TFDP2
  hgvsc: ENST00000497579.1:c.521G>A
  hgvsp: ENSP00000417220.1:p.Arg174Gln
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000439782
  ensembl transcript: ENST00000499676
  gene symbol: TFDP2
  hgvsc: ENST00000499676.2:c.524G>A
  hgvsp: ENSP00000439782.1:p.Arg175Gln
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000315668
  ensembl transcript: ENST00000317104
  gene symbol: TFDP2
  hgvsc: ENST00000317104.7:c.476G>A
  hgvsp: ENSP00000315668.7:p.Arg159Gln
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417726
  ensembl transcript: ENST00000467667
  gene symbol: TFDP2
  hgvsc: ENST00000467667.1:c.524G>A
  hgvsp: ENSP00000417726.1:p.Arg175Gln
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000419036
  ensembl transcript: ENST00000495310
  gene symbol: TFDP2
  hgvsc: ENST00000495310.1:c.413G>A
  hgvsp: ENSP00000419036.1:p.Arg138Gln
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000420599
  ensembl transcript: ENST00000486111
  gene symbol: TFDP2
  hgvsc: ENST00000486111.1:c.524G>A
  hgvsp: ENSP00000420599.1:p.Arg175Gln
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000309622
  ensembl transcript: ENST00000310282
  gene symbol: TFDP2
  hgvsc: ENST00000310282.6:c.524G>A
  hgvsp: ENSP00000309622.6:p.Arg175Gln
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000418590
  ensembl transcript: ENST00000467072
  gene symbol: TFDP2
  hgvsc: ENST00000467072.1:c.524G>A
  hgvsp: ENSP00000418590.1:p.Arg175Gln
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000381078
  ensembl transcript: ENST00000397991
  gene symbol: TFDP2
  hgvsc: ENST00000397991.4:c.620G>A
  hgvsp: ENSP00000381078.4:p.Arg207Gln
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000420616
  ensembl transcript: ENST00000489671
  gene symbol: TFDP2
  hgvsc: ENST00000489671.1:c.704G>A
  hgvsp: ENSP00000420616.1:p.Arg235Gln
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000418122
  ensembl transcript: ENST00000478006
  gene symbol: TFDP2
  hgvsc: ENST00000478006.1:c.446G>A
  hgvsp: ENSP00000418122.1:p.Arg149Gln
  variant of: http://identifiers.org/hgnc/11751
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1115
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2935
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10090
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12587
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7631
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5471
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg235Gln
num of homozygotes: 0
population: Other
population: European (Finnish)
population: East Asian
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD

3-141688958-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 141688958
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 141688958
    reference: chr 3
allele count: 13
allele frequency: 1.076479745619555e-4
allele num: 120764
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000418590
  ensembl transcript: ENST00000467072
  gene symbol: TFDP2
  hgvsc: ENST00000467072.1:c.509G>A
  hgvsp: ENSP00000418590.1:p.Arg170Gln
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417384
  ensembl transcript: ENST00000487734
  gene symbol: TFDP2
  hgvsc: ENST00000487734.1:c.*579G>A
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417726
  ensembl transcript: ENST00000467667
  gene symbol: TFDP2
  hgvsc: ENST00000467667.1:c.509G>A
  hgvsp: ENSP00000417726.1:p.Arg170Gln
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000418971
  ensembl transcript: ENST00000477292
  gene symbol: TFDP2
  hgvsc: ENST00000477292.1:c.281G>A
  hgvsp: ENSP00000418971.1:p.Arg94Gln
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417585
  ensembl transcript: ENST00000479040
  gene symbol: TFDP2
  hgvsc: ENST00000479040.1:c.506G>A
  hgvsp: ENSP00000417585.1:p.Arg169Gln
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000315668
  ensembl transcript: ENST00000317104
  gene symbol: TFDP2
  hgvsc: ENST00000317104.7:c.461G>A
  hgvsp: ENSP00000315668.7:p.Arg154Gln
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000439782
  ensembl transcript: ENST00000499676
  gene symbol: TFDP2
  hgvsc: ENST00000499676.2:c.509G>A
  hgvsp: ENSP00000439782.1:p.Arg170Gln
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000381078
  ensembl transcript: ENST00000397991
  gene symbol: TFDP2
  hgvsc: ENST00000397991.4:c.605G>A
  hgvsp: ENSP00000381078.4:p.Arg202Gln
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000419036
  ensembl transcript: ENST00000495310
  gene symbol: TFDP2
  hgvsc: ENST00000495310.1:c.398G>A
  hgvsp: ENSP00000419036.1:p.Arg133Gln
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000420616
  ensembl transcript: ENST00000489671
  gene symbol: TFDP2
  hgvsc: ENST00000489671.1:c.689G>A
  hgvsp: ENSP00000420616.1:p.Arg230Gln
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417220
  ensembl transcript: ENST00000497579
  gene symbol: TFDP2
  hgvsc: ENST00000497579.1:c.506G>A
  hgvsp: ENSP00000417220.1:p.Arg169Gln
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000418122
  ensembl transcript: ENST00000478006
  gene symbol: TFDP2
  hgvsc: ENST00000478006.1:c.431G>A
  hgvsp: ENSP00000418122.1:p.Arg144Gln
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000420599
  ensembl transcript: ENST00000486111
  gene symbol: TFDP2
  hgvsc: ENST00000486111.1:c.509G>A
  hgvsp: ENSP00000420599.1:p.Arg170Gln
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000309622
  ensembl transcript: ENST00000310282
  gene symbol: TFDP2
  hgvsc: ENST00000310282.6:c.509G>A
  hgvsp: ENSP00000309622.6:p.Arg170Gln
  variant of: http://identifiers.org/hgnc/11751
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12583
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7630
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2266
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8854
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3467
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5469
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg230Gln
num of homozygotes: 1
population: Other
population: European (Finnish)
population: South Asian
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: QD

3-141688967-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 141688967
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 141688967
    reference: chr 3
allele count: 1
allele frequency: 8.281024859636628e-6
allele num: 120758
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000439782
  ensembl transcript: ENST00000499676
  gene symbol: TFDP2
  hgvsc: ENST00000499676.2:c.500G>A
  hgvsp: ENSP00000439782.1:p.Arg167Gln
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000418971
  ensembl transcript: ENST00000477292
  gene symbol: TFDP2
  hgvsc: ENST00000477292.1:c.272G>A
  hgvsp: ENSP00000418971.1:p.Arg91Gln
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417384
  ensembl transcript: ENST00000487734
  gene symbol: TFDP2
  hgvsc: ENST00000487734.1:c.*570G>A
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417726
  ensembl transcript: ENST00000467667
  gene symbol: TFDP2
  hgvsc: ENST00000467667.1:c.500G>A
  hgvsp: ENSP00000417726.1:p.Arg167Gln
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000309622
  ensembl transcript: ENST00000310282
  gene symbol: TFDP2
  hgvsc: ENST00000310282.6:c.500G>A
  hgvsp: ENSP00000309622.6:p.Arg167Gln
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000419036
  ensembl transcript: ENST00000495310
  gene symbol: TFDP2
  hgvsc: ENST00000495310.1:c.389G>A
  hgvsp: ENSP00000419036.1:p.Arg130Gln
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000315668
  ensembl transcript: ENST00000317104
  gene symbol: TFDP2
  hgvsc: ENST00000317104.7:c.452G>A
  hgvsp: ENSP00000315668.7:p.Arg151Gln
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000381078
  ensembl transcript: ENST00000397991
  gene symbol: TFDP2
  hgvsc: ENST00000397991.4:c.596G>A
  hgvsp: ENSP00000381078.4:p.Arg199Gln
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000418122
  ensembl transcript: ENST00000478006
  gene symbol: TFDP2
  hgvsc: ENST00000478006.1:c.422G>A
  hgvsp: ENSP00000418122.1:p.Arg141Gln
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417585
  ensembl transcript: ENST00000479040
  gene symbol: TFDP2
  hgvsc: ENST00000479040.1:c.497G>A
  hgvsp: ENSP00000417585.1:p.Arg166Gln
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417220
  ensembl transcript: ENST00000497579
  gene symbol: TFDP2
  hgvsc: ENST00000497579.1:c.497G>A
  hgvsp: ENSP00000417220.1:p.Arg166Gln
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000418590
  ensembl transcript: ENST00000467072
  gene symbol: TFDP2
  hgvsc: ENST00000467072.1:c.500G>A
  hgvsp: ENSP00000418590.1:p.Arg167Gln
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000420616
  ensembl transcript: ENST00000489671
  gene symbol: TFDP2
  hgvsc: ENST00000489671.1:c.680G>A
  hgvsp: ENSP00000420616.1:p.Arg227Gln
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000420599
  ensembl transcript: ENST00000486111
  gene symbol: TFDP2
  hgvsc: ENST00000486111.1:c.500G>A
  hgvsp: ENSP00000420599.1:p.Arg167Gln
  variant of: http://identifiers.org/hgnc/11751
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3467
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8848
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10093
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1114
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7631
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1606
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12586
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg227Gln
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Other
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ

3-141688972-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 141688972
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 141688972
    reference: chr 3
allele count: 1
allele frequency: 8.281024859636628e-6
allele num: 120758
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000315668
  ensembl transcript: ENST00000317104
  gene symbol: TFDP2
  hgvsc: ENST00000317104.7:c.447G>C
  hgvsp: ENSP00000315668.7:p.Gln149His
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417384
  ensembl transcript: ENST00000487734
  gene symbol: TFDP2
  hgvsc: ENST00000487734.1:c.*565G>C
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000418122
  ensembl transcript: ENST00000478006
  gene symbol: TFDP2
  hgvsc: ENST00000478006.1:c.417G>C
  hgvsp: ENSP00000418122.1:p.Gln139His
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000418590
  ensembl transcript: ENST00000467072
  gene symbol: TFDP2
  hgvsc: ENST00000467072.1:c.495G>C
  hgvsp: ENSP00000418590.1:p.Gln165His
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417220
  ensembl transcript: ENST00000497579
  gene symbol: TFDP2
  hgvsc: ENST00000497579.1:c.492G>C
  hgvsp: ENSP00000417220.1:p.Gln164His
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417726
  ensembl transcript: ENST00000467667
  gene symbol: TFDP2
  hgvsc: ENST00000467667.1:c.495G>C
  hgvsp: ENSP00000417726.1:p.Gln165His
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000381078
  ensembl transcript: ENST00000397991
  gene symbol: TFDP2
  hgvsc: ENST00000397991.4:c.591G>C
  hgvsp: ENSP00000381078.4:p.Gln197His
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000439782
  ensembl transcript: ENST00000499676
  gene symbol: TFDP2
  hgvsc: ENST00000499676.2:c.495G>C
  hgvsp: ENSP00000439782.1:p.Gln165His
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000418971
  ensembl transcript: ENST00000477292
  gene symbol: TFDP2
  hgvsc: ENST00000477292.1:c.267G>C
  hgvsp: ENSP00000418971.1:p.Gln89His
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000419036
  ensembl transcript: ENST00000495310
  gene symbol: TFDP2
  hgvsc: ENST00000495310.1:c.384G>C
  hgvsp: ENSP00000419036.1:p.Gln128His
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000420616
  ensembl transcript: ENST00000489671
  gene symbol: TFDP2
  hgvsc: ENST00000489671.1:c.675G>C
  hgvsp: ENSP00000420616.1:p.Gln225His
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000420599
  ensembl transcript: ENST00000486111
  gene symbol: TFDP2
  hgvsc: ENST00000486111.1:c.495G>C
  hgvsp: ENSP00000420599.1:p.Gln165His
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000309622
  ensembl transcript: ENST00000310282
  gene symbol: TFDP2
  hgvsc: ENST00000310282.6:c.495G>C
  hgvsp: ENSP00000309622.6:p.Gln165His
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417585
  ensembl transcript: ENST00000479040
  gene symbol: TFDP2
  hgvsc: ENST00000479040.1:c.492G>C
  hgvsp: ENSP00000417585.1:p.Gln164His
  variant of: http://identifiers.org/hgnc/11751
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12587
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 805
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5468
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2266
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8846
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1608
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1600
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gln225His
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Other
reference allele: C
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: BaseQRankSum

3-141688992-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 141688992
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 141688992
    reference: chr 3
allele count: 2
allele frequency: 1.656616526406467e-5
allele num: 120728
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000381078
  ensembl transcript: ENST00000397991
  gene symbol: TFDP2
  hgvsc: ENST00000397991.4:c.580-9G>A
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000418971
  ensembl transcript: ENST00000477292
  gene symbol: TFDP2
  hgvsc: ENST00000477292.1:c.256-9G>A
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417384
  ensembl transcript: ENST00000487734
  gene symbol: TFDP2
  hgvsc: ENST00000487734.1:c.*554-9G>A
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000309622
  ensembl transcript: ENST00000310282
  gene symbol: TFDP2
  hgvsc: ENST00000310282.6:c.484-9G>A
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000419036
  ensembl transcript: ENST00000495310
  gene symbol: TFDP2
  hgvsc: ENST00000495310.1:c.373-9G>A
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417726
  ensembl transcript: ENST00000467667
  gene symbol: TFDP2
  hgvsc: ENST00000467667.1:c.484-9G>A
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000420599
  ensembl transcript: ENST00000486111
  gene symbol: TFDP2
  hgvsc: ENST00000486111.1:c.484-9G>A
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000439782
  ensembl transcript: ENST00000499676
  gene symbol: TFDP2
  hgvsc: ENST00000499676.2:c.484-9G>A
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000420616
  ensembl transcript: ENST00000489671
  gene symbol: TFDP2
  hgvsc: ENST00000489671.1:c.664-9G>A
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417220
  ensembl transcript: ENST00000497579
  gene symbol: TFDP2
  hgvsc: ENST00000497579.1:c.481-9G>A
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000418590
  ensembl transcript: ENST00000467072
  gene symbol: TFDP2
  hgvsc: ENST00000467072.1:c.484-9G>A
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000315668
  ensembl transcript: ENST00000317104
  gene symbol: TFDP2
  hgvsc: ENST00000317104.7:c.436-9G>A
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000418122
  ensembl transcript: ENST00000478006
  gene symbol: TFDP2
  hgvsc: ENST00000478006.1:c.406-9G>A
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417585
  ensembl transcript: ENST00000479040
  gene symbol: TFDP2
  hgvsc: ENST00000479040.1:c.481-9G>A
  variant of: http://identifiers.org/hgnc/11751
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12560
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5467
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 804
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2931
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7633
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1549
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1607
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10091
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: C
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: QD

3-141689017-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 141689017
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 141689017
    reference: chr 3
allele count: 10150
allele frequency: 8.416810402016718e-2
allele num: 120592
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000419036
  ensembl transcript: ENST00000495310
  gene symbol: TFDP2
  hgvsc: ENST00000495310.1:c.373-34A>G
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417726
  ensembl transcript: ENST00000467667
  gene symbol: TFDP2
  hgvsc: ENST00000467667.1:c.484-34A>G
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417220
  ensembl transcript: ENST00000497579
  gene symbol: TFDP2
  hgvsc: ENST00000497579.1:c.481-34A>G
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000381078
  ensembl transcript: ENST00000397991
  gene symbol: TFDP2
  hgvsc: ENST00000397991.4:c.580-34A>G
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000418122
  ensembl transcript: ENST00000478006
  gene symbol: TFDP2
  hgvsc: ENST00000478006.1:c.406-34A>G
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417384
  ensembl transcript: ENST00000487734
  gene symbol: TFDP2
  hgvsc: ENST00000487734.1:c.*554-34A>G
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000418590
  ensembl transcript: ENST00000467072
  gene symbol: TFDP2
  hgvsc: ENST00000467072.1:c.484-34A>G
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417585
  ensembl transcript: ENST00000479040
  gene symbol: TFDP2
  hgvsc: ENST00000479040.1:c.481-34A>G
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000420599
  ensembl transcript: ENST00000486111
  gene symbol: TFDP2
  hgvsc: ENST00000486111.1:c.484-34A>G
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000315668
  ensembl transcript: ENST00000317104
  gene symbol: TFDP2
  hgvsc: ENST00000317104.7:c.436-34A>G
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000420616
  ensembl transcript: ENST00000489671
  gene symbol: TFDP2
  hgvsc: ENST00000489671.1:c.664-34A>G
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000309622
  ensembl transcript: ENST00000310282
  gene symbol: TFDP2
  hgvsc: ENST00000310282.6:c.484-34A>G
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000439782
  ensembl transcript: ENST00000499676
  gene symbol: TFDP2
  hgvsc: ENST00000499676.2:c.484-34A>G
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000418971
  ensembl transcript: ENST00000477292
  gene symbol: TFDP2
  hgvsc: ENST00000477292.1:c.256-34A>G
  variant of: http://identifiers.org/hgnc/11751
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 868
  bin: 1.75e1
  variant carriers: 56
genotype depth: GenotypeDepth
  all individuals: 2870
  bin: 9.75e1
  variant carriers: 722
genotype depth: GenotypeDepth
  all individuals: 10060
  bin: 3.75e1
  variant carriers: 1011
genotype depth: GenotypeDepth
  all individuals: 1488
  bin: 6.25e1
  variant carriers: 689
genotype depth: GenotypeDepth
  all individuals: 1641
  bin: 2.25e1
  variant carriers: 155
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 9.25e1
  variant carriers: 97
genotype depth: GenotypeDepth
  all individuals: 3424
  bin: 5.25e1
  variant carriers: 1224
genotype depth: GenotypeDepth
  all individuals: 8361
  bin: 2.75e1
  variant carriers: 284
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 1.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 739
  bin: 7.25e1
  variant carriers: 267
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 8.75e1
  variant carriers: 106
genotype depth: GenotypeDepth
  all individuals: 7661
  bin: 4.25e1
  variant carriers: 1279
genotype quality: GenotypeQuality
num of homozygotes: 507
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Latino
population: East Asian
population: African
population: Other
reference allele: T
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum

3-141689019-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 141689019
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 141689019
    reference: chr 3
allele count: 3
allele frequency: 2.486448853747078e-5
allele num: 120654
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000418590
  ensembl transcript: ENST00000467072
  gene symbol: TFDP2
  hgvsc: ENST00000467072.1:c.484-36C>T
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000309622
  ensembl transcript: ENST00000310282
  gene symbol: TFDP2
  hgvsc: ENST00000310282.6:c.484-36C>T
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417585
  ensembl transcript: ENST00000479040
  gene symbol: TFDP2
  hgvsc: ENST00000479040.1:c.481-36C>T
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000419036
  ensembl transcript: ENST00000495310
  gene symbol: TFDP2
  hgvsc: ENST00000495310.1:c.373-36C>T
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000439782
  ensembl transcript: ENST00000499676
  gene symbol: TFDP2
  hgvsc: ENST00000499676.2:c.484-36C>T
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000420599
  ensembl transcript: ENST00000486111
  gene symbol: TFDP2
  hgvsc: ENST00000486111.1:c.484-36C>T
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000381078
  ensembl transcript: ENST00000397991
  gene symbol: TFDP2
  hgvsc: ENST00000397991.4:c.580-36C>T
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417726
  ensembl transcript: ENST00000467667
  gene symbol: TFDP2
  hgvsc: ENST00000467667.1:c.484-36C>T
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000420616
  ensembl transcript: ENST00000489671
  gene symbol: TFDP2
  hgvsc: ENST00000489671.1:c.664-36C>T
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000418122
  ensembl transcript: ENST00000478006
  gene symbol: TFDP2
  hgvsc: ENST00000478006.1:c.406-36C>T
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417384
  ensembl transcript: ENST00000487734
  gene symbol: TFDP2
  hgvsc: ENST00000487734.1:c.*554-36C>T
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000418971
  ensembl transcript: ENST00000477292
  gene symbol: TFDP2
  hgvsc: ENST00000477292.1:c.256-36C>T
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417220
  ensembl transcript: ENST00000497579
  gene symbol: TFDP2
  hgvsc: ENST00000497579.1:c.481-36C>T
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000315668
  ensembl transcript: ENST00000317104
  gene symbol: TFDP2
  hgvsc: ENST00000317104.7:c.436-36C>T
  variant of: http://identifiers.org/hgnc/11751
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12660
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 800
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1149
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1751
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1812
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10538
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1080
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 484
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8707
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2674
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Other
population: Latino
population: African
population: European (Finnish)
population: South Asian
reference allele: G
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum

http://identifiers.org/exac.variant/3-141689024-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 141689024
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 141689024
    reference: chr 3
allele count: 2
allele frequency: 1.658154805332626e-5
allele num: 120616
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000439782
  ensembl transcript: ENST00000499676
  gene symbol: TFDP2
  hgvsc: ENST00000499676.2:c.484-41T>G
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000315668
  ensembl transcript: ENST00000317104
  gene symbol: TFDP2
  hgvsc: ENST00000317104.7:c.436-41T>G
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417220
  ensembl transcript: ENST00000497579
  gene symbol: TFDP2
  hgvsc: ENST00000497579.1:c.481-41T>G
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000309622
  ensembl transcript: ENST00000310282
  gene symbol: TFDP2
  hgvsc: ENST00000310282.6:c.484-41T>G
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417384
  ensembl transcript: ENST00000487734
  gene symbol: TFDP2
  hgvsc: ENST00000487734.1:c.*554-41T>G
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000418122
  ensembl transcript: ENST00000478006
  gene symbol: TFDP2
  hgvsc: ENST00000478006.1:c.406-41T>G
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000420599
  ensembl transcript: ENST00000486111
  gene symbol: TFDP2
  hgvsc: ENST00000486111.1:c.484-41T>G
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417585
  ensembl transcript: ENST00000479040
  gene symbol: TFDP2
  hgvsc: ENST00000479040.1:c.481-41T>G
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000418590
  ensembl transcript: ENST00000467072
  gene symbol: TFDP2
  hgvsc: ENST00000467072.1:c.484-41T>G
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417726
  ensembl transcript: ENST00000467667
  gene symbol: TFDP2
  hgvsc: ENST00000467667.1:c.484-41T>G
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000381078
  ensembl transcript: ENST00000397991
  gene symbol: TFDP2
  hgvsc: ENST00000397991.4:c.580-41T>G
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000420616
  ensembl transcript: ENST00000489671
  gene symbol: TFDP2
  hgvsc: ENST00000489671.1:c.664-41T>G
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000419036
  ensembl transcript: ENST00000495310
  gene symbol: TFDP2
  hgvsc: ENST00000495310.1:c.373-41T>G
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000418971
  ensembl transcript: ENST00000477292
  gene symbol: TFDP2
  hgvsc: ENST00000477292.1:c.256-41T>G
  variant of: http://identifiers.org/hgnc/11751
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 624
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1805
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2230
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8138
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5367
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 801
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10434
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7829
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12124
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: South Asian
population: East Asian
reference allele: A
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: FS

3-141689025-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 141689025
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 141689025
    reference: chr 3
allele count: 10141
allele frequency: 8.417723620426323e-2
allele num: 120472
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417384
  ensembl transcript: ENST00000487734
  gene symbol: TFDP2
  hgvsc: ENST00000487734.1:c.*554-42G>C
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417585
  ensembl transcript: ENST00000479040
  gene symbol: TFDP2
  hgvsc: ENST00000479040.1:c.481-42G>C
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000420599
  ensembl transcript: ENST00000486111
  gene symbol: TFDP2
  hgvsc: ENST00000486111.1:c.484-42G>C
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000419036
  ensembl transcript: ENST00000495310
  gene symbol: TFDP2
  hgvsc: ENST00000495310.1:c.373-42G>C
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000439782
  ensembl transcript: ENST00000499676
  gene symbol: TFDP2
  hgvsc: ENST00000499676.2:c.484-42G>C
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000381078
  ensembl transcript: ENST00000397991
  gene symbol: TFDP2
  hgvsc: ENST00000397991.4:c.580-42G>C
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417726
  ensembl transcript: ENST00000467667
  gene symbol: TFDP2
  hgvsc: ENST00000467667.1:c.484-42G>C
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000418590
  ensembl transcript: ENST00000467072
  gene symbol: TFDP2
  hgvsc: ENST00000467072.1:c.484-42G>C
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000309622
  ensembl transcript: ENST00000310282
  gene symbol: TFDP2
  hgvsc: ENST00000310282.6:c.484-42G>C
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000418122
  ensembl transcript: ENST00000478006
  gene symbol: TFDP2
  hgvsc: ENST00000478006.1:c.406-42G>C
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000420616
  ensembl transcript: ENST00000489671
  gene symbol: TFDP2
  hgvsc: ENST00000489671.1:c.664-42G>C
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000418971
  ensembl transcript: ENST00000477292
  gene symbol: TFDP2
  hgvsc: ENST00000477292.1:c.256-42G>C
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000315668
  ensembl transcript: ENST00000317104
  gene symbol: TFDP2
  hgvsc: ENST00000317104.7:c.436-42G>C
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417220
  ensembl transcript: ENST00000497579
  gene symbol: TFDP2
  hgvsc: ENST00000497579.1:c.481-42G>C
  variant of: http://identifiers.org/hgnc/11751
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.5e0
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 7.75e1
  variant carriers: 94
genotype depth: GenotypeDepth
  all individuals: 1809
  bin: 1.75e1
  variant carriers: 145
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 9.25e1
  variant carriers: 60
genotype depth: GenotypeDepth
  all individuals: 611
  bin: 7.25e1
  variant carriers: 140
genotype depth: GenotypeDepth
  all individuals: 10484
  bin: 3.75e1
  variant carriers: 1527
genotype depth: GenotypeDepth
  all individuals: 1127
  bin: 6.25e1
  variant carriers: 329
genotype depth: GenotypeDepth
  all individuals: 2270
  bin: 2.25e1
  variant carriers: 317
genotype depth: GenotypeDepth
  all individuals: 1774
  bin: 5.75e1
  variant carriers: 537
genotype depth: GenotypeDepth
  all individuals: 797
  bin: 6.75e1
  variant carriers: 195
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 8.25e1
  variant carriers: 96
genotype depth: GenotypeDepth
  all individuals: 3072
  bin: 5.25e1
  variant carriers: 883
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 8.75e1
  variant carriers: 91
genotype quality: GenotypeQuality
num of homozygotes: 505
population: South Asian
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD

3-141689028-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 141689028
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 141689028
    reference: chr 3
allele count: 565
allele frequency: 4.688718859438018e-3
allele num: 120502
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000418590
  ensembl transcript: ENST00000467072
  gene symbol: TFDP2
  hgvsc: ENST00000467072.1:c.484-45A>G
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417220
  ensembl transcript: ENST00000497579
  gene symbol: TFDP2
  hgvsc: ENST00000497579.1:c.481-45A>G
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417726
  ensembl transcript: ENST00000467667
  gene symbol: TFDP2
  hgvsc: ENST00000467667.1:c.484-45A>G
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000420599
  ensembl transcript: ENST00000486111
  gene symbol: TFDP2
  hgvsc: ENST00000486111.1:c.484-45A>G
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000309622
  ensembl transcript: ENST00000310282
  gene symbol: TFDP2
  hgvsc: ENST00000310282.6:c.484-45A>G
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000381078
  ensembl transcript: ENST00000397991
  gene symbol: TFDP2
  hgvsc: ENST00000397991.4:c.580-45A>G
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000420616
  ensembl transcript: ENST00000489671
  gene symbol: TFDP2
  hgvsc: ENST00000489671.1:c.664-45A>G
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000439782
  ensembl transcript: ENST00000499676
  gene symbol: TFDP2
  hgvsc: ENST00000499676.2:c.484-45A>G
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000418971
  ensembl transcript: ENST00000477292
  gene symbol: TFDP2
  hgvsc: ENST00000477292.1:c.256-45A>G
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000419036
  ensembl transcript: ENST00000495310
  gene symbol: TFDP2
  hgvsc: ENST00000495310.1:c.373-45A>G
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000315668
  ensembl transcript: ENST00000317104
  gene symbol: TFDP2
  hgvsc: ENST00000317104.7:c.436-45A>G
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417384
  ensembl transcript: ENST00000487734
  gene symbol: TFDP2
  hgvsc: ENST00000487734.1:c.*554-45A>G
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417585
  ensembl transcript: ENST00000479040
  gene symbol: TFDP2
  hgvsc: ENST00000479040.1:c.481-45A>G
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000418122
  ensembl transcript: ENST00000478006
  gene symbol: TFDP2
  hgvsc: ENST00000478006.1:c.406-45A>G
  variant of: http://identifiers.org/hgnc/11751
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8132
  bin: 2.75e1
  variant carriers: 31
genotype depth: GenotypeDepth
  all individuals: 1977
  bin: 1.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 607
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 557
  bin: 7.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2635
  bin: 5.25e1
  variant carriers: 41
genotype depth: GenotypeDepth
  all individuals: 1493
  bin: 5.75e1
  variant carriers: 30
genotype depth: GenotypeDepth
  all individuals: 964
  bin: 6.25e1
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 8.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 2557
  bin: 9.75e1
  variant carriers: 57
genotype depth: GenotypeDepth
  all individuals: 12219
  bin: 3.25e1
  variant carriers: 56
genotype depth: GenotypeDepth
  all individuals: 3950
  bin: 2.25e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 10417
  bin: 3.75e1
  variant carriers: 71
genotype quality: GenotypeQuality
num of homozygotes: 17
population: Latino
population: African
population: European (Finnish)
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: QD

3-141689032-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 141689032
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 141689032
    reference: chr 3
allele count: 51
allele frequency: 4.234825209665366e-4
allele num: 120430
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417220
  ensembl transcript: ENST00000497579
  gene symbol: TFDP2
  hgvsc: ENST00000497579.1:c.481-49T>C
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000418971
  ensembl transcript: ENST00000477292
  gene symbol: TFDP2
  hgvsc: ENST00000477292.1:c.256-49T>C
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000439782
  ensembl transcript: ENST00000499676
  gene symbol: TFDP2
  hgvsc: ENST00000499676.2:c.484-49T>C
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000418590
  ensembl transcript: ENST00000467072
  gene symbol: TFDP2
  hgvsc: ENST00000467072.1:c.484-49T>C
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417585
  ensembl transcript: ENST00000479040
  gene symbol: TFDP2
  hgvsc: ENST00000479040.1:c.481-49T>C
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000315668
  ensembl transcript: ENST00000317104
  gene symbol: TFDP2
  hgvsc: ENST00000317104.7:c.436-49T>C
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417726
  ensembl transcript: ENST00000467667
  gene symbol: TFDP2
  hgvsc: ENST00000467667.1:c.484-49T>C
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000420616
  ensembl transcript: ENST00000489671
  gene symbol: TFDP2
  hgvsc: ENST00000489671.1:c.664-49T>C
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000381078
  ensembl transcript: ENST00000397991
  gene symbol: TFDP2
  hgvsc: ENST00000397991.4:c.580-49T>C
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000309622
  ensembl transcript: ENST00000310282
  gene symbol: TFDP2
  hgvsc: ENST00000310282.6:c.484-49T>C
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000418122
  ensembl transcript: ENST00000478006
  gene symbol: TFDP2
  hgvsc: ENST00000478006.1:c.406-49T>C
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000417384
  ensembl transcript: ENST00000487734
  gene symbol: TFDP2
  hgvsc: ENST00000487734.1:c.*554-49T>C
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000420599
  ensembl transcript: ENST00000486111
  gene symbol: TFDP2
  hgvsc: ENST00000486111.1:c.484-49T>C
  variant of: http://identifiers.org/hgnc/11751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114126
  ensembl protein: ENSP00000419036
  ensembl transcript: ENST00000495310
  gene symbol: TFDP2
  hgvsc: ENST00000495310.1:c.373-49T>C
  variant of: http://identifiers.org/hgnc/11751
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4832
  bin: 4.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1487
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1962
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4634
  bin: 2.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 706
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 952
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 611
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10282
  bin: 3.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: Latino
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD

3-141692843-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 141692843
allele count: 2
allele frequency: 1.663506005256679e-5
allele num: 120228
alternate allele: C
canonical: true
consequence: intron
filter: PASS
num of homozygotes: 0
reference allele: T

GenotypeDepth
all individuals: 757
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 11494
bin: 3.25e1
variant carriers: 1

GenotypeDepth
all individuals: 730
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12220
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 169
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1882
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6702
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1786
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4324
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 121
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 272
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 802
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 100
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 85
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2013
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2171
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1085
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3512
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2925
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4838
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14640
bin: 9.75e1
variant carriers: 6

GenotypeQuality
all individuals: 734
bin: 4.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11552
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 9.065087327007917e-5
allele num: 66188
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8568
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15720
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9766
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.239437e6

MQRankSum
type: SiteQuality
SIO_000300: -1.4e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.4e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.85e-1

FS
type: SiteQuality
SIO_000300: 3.955e0

VQSLOD
type: SiteQuality
SIO_000300: 1.04e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -3.761e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.01e-1

GenotypeDepth
all individuals: 5078
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 5557
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1244
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 232
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1500
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 634
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 355
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1337
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 122
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 882
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 634
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1830
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4917
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3751
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 166
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 300
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 279
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3032
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34989
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2462
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2862
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 153
bin: 5.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9762
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8606
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11538
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65748
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.416196974191635e-5
allele num: 13484
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 846
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.181e0

DP
type: SiteQuality
SIO_000300: 3.365877e6

QD
type: SiteQuality
SIO_000300: 1.014e1

VQSLOD
type: SiteQuality
SIO_000300: -2.038e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.4e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 1.75e0

MQRankSum
type: SiteQuality
SIO_000300: 1.43e-1

FS
type: SiteQuality
SIO_000300: 3.424e0

MQ
type: SiteQuality
SIO_000300: 5.787e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.53e0

GenotypeDepth
all individuals: 3550
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 4370
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3851
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2861
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 169
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1513
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 329
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 237
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 154
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1829
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4915
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 639
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 276
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3747
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34987
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 886
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 629
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 126
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 299
bin: 4.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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allele frequency: 0.0e0
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South Asian
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European (Finnish)
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Latino
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East Asian
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African
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VQSLOD
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BaseQRankSum
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InbreedingCoeff
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ReadPosRankSum
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MQ
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MQRankSum
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FS
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DP
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ClippingRankSum
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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European (Non-Finnish)
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Other
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European (Finnish)
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South Asian
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East Asian
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VQSLOD
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FS
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MQRankSum
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DP
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QD
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ReadPosRankSum
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BaseQRankSum
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ClippingRankSum
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MQ
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InbreedingCoeff
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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num of homozygotes: 0

European (Non-Finnish)
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African
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East Asian
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Latino
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European (Finnish)
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Other
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DP
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QD
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MQ
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InbreedingCoeff
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ReadPosRankSum
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FS
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BaseQRankSum
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VQSLOD
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MQRankSum
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ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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European (Finnish)
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South Asian
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European (Non-Finnish)
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allele num: 65916
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Other
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East Asian
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ReadPosRankSum
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MQRankSum
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InbreedingCoeff
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MQ
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BaseQRankSum
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VQSLOD
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FS
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DP
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ClippingRankSum
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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Other
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Latino
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South Asian
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European (Finnish)
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African
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European (Non-Finnish)
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BaseQRankSum
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DP
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MQ
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QD
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MQRankSum
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ClippingRankSum
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FS
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InbreedingCoeff
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VQSLOD
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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African
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European (Finnish)
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Latino
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Other
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East Asian
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South Asian
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MQ
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QD
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BaseQRankSum
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FS
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InbreedingCoeff
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MQRankSum
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VQSLOD
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ReadPosRankSum
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DP
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ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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African
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Other
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Latino
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European (Finnish)
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European (Non-Finnish)
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South Asian
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InbreedingCoeff
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VQSLOD
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MQRankSum
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MQ
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ClippingRankSum
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DP
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FS
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QD
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BaseQRankSum
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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South Asian
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Latino
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European (Non-Finnish)
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allele num: 66724
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African
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East Asian
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Other
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ReadPosRankSum
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DP
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ClippingRankSum
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InbreedingCoeff
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MQ
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MQRankSum
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FS
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QD
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VQSLOD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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Other
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East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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European (Finnish)
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Latino
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South Asian
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ClippingRankSum
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BaseQRankSum
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FS
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VQSLOD
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MQRankSum
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DP
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MQ
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ReadPosRankSum
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InbreedingCoeff
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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European (Finnish)
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African
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South Asian
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Other
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European (Non-Finnish)
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MQRankSum
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QD
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DP
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ClippingRankSum
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FS
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MQ
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InbreedingCoeff
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ReadPosRankSum
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BaseQRankSum
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VQSLOD
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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Latino
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South Asian
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East Asian
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European (Finnish)
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European (Non-Finnish)
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Other
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MQ
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VQSLOD
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DP
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ClippingRankSum
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InbreedingCoeff
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ReadPosRankSum
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FS
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MQRankSum
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BaseQRankSum
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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Latino
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European (Finnish)
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African
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European (Non-Finnish)
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South Asian
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VQSLOD
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MQ
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ReadPosRankSum
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InbreedingCoeff
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FS
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QD
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ClippingRankSum
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DP
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MQRankSum
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BaseQRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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European (Finnish)
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South Asian
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Latino
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European (Non-Finnish)
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East Asian
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VQSLOD
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ReadPosRankSum
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BaseQRankSum
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MQRankSum
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InbreedingCoeff
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DP
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FS
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QD
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ClippingRankSum
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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num of homozygotes: 0

African
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele num: 66704
num of homozygotes: 0

South Asian
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Other
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MQRankSum
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ReadPosRankSum
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VQSLOD
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MQ
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QD
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FS
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BaseQRankSum
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ClippingRankSum
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SIO_000300: 6.04e-1

InbreedingCoeff
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

African
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele num: 66704
num of homozygotes: 0

European (Finnish)
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num of homozygotes: 0

Other
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ClippingRankSum
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QD
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InbreedingCoeff
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FS
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BaseQRankSum
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MQ
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VQSLOD
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MQRankSum
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DP
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 3

European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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num of homozygotes: 0

Other
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African
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East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
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num of homozygotes: 0

South Asian
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VQSLOD
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ClippingRankSum
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MQ
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SIO_000300: 5.974e1

ReadPosRankSum
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DP
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InbreedingCoeff
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BaseQRankSum
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QD
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MQRankSum
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FS
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SIO_000300: 5.47e-1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele count: 2
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allele num: 66710
num of homozygotes: 0

East Asian
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Latino
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allele num: 11574
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European (Finnish)
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num of homozygotes: 0

South Asian
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Other
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African
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InbreedingCoeff
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QD
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MQ
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BaseQRankSum
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MQRankSum
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FS
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ClippingRankSum
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VQSLOD
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DP
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ReadPosRankSum
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GenotypeDepth
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variant carriers: 657

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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European (Finnish)
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European (Non-Finnish)
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East Asian
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Latino
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Other
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South Asian
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ReadPosRankSum
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VQSLOD
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ClippingRankSum
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DP
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MQ
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InbreedingCoeff
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QD
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FS
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BaseQRankSum
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MQRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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East Asian
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European (Finnish)
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Other
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South Asian
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European (Non-Finnish)
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Latino
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QD
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VQSLOD
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InbreedingCoeff
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FS
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MQRankSum
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DP
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BaseQRankSum
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ClippingRankSum
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MQ
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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African
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South Asian
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European (Finnish)
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East Asian
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QD
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MQRankSum
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DP
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MQ
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VQSLOD
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ClippingRankSum
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FS
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ReadPosRankSum
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InbreedingCoeff
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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European (Non-Finnish)
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European (Finnish)
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African
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Latino
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South Asian
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ReadPosRankSum
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InbreedingCoeff
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DP
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QD
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MQ
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MQRankSum
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BaseQRankSum
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VQSLOD
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FS
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ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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African
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European (Finnish)
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Latino
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South Asian
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European (Non-Finnish)
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VQSLOD
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MQRankSum
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QD
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ReadPosRankSum
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InbreedingCoeff
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FS
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DP
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ClippingRankSum
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BaseQRankSum
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MQ
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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Latino
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European (Finnish)
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European (Non-Finnish)
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Other
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East Asian
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MQRankSum
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InbreedingCoeff
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ClippingRankSum
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VQSLOD
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QD
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ReadPosRankSum
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BaseQRankSum
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FS
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MQ
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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European (Non-Finnish)
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European (Finnish)
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East Asian
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MQ
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BaseQRankSum
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InbreedingCoeff
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DP
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VQSLOD
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MQRankSum
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ClippingRankSum
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ReadPosRankSum
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QD
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African
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East Asian
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MQ
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 1.50154659299078e-5
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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num of homozygotes: 0

VQSLOD
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MQRankSum
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BaseQRankSum
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DP
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MQ
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ReadPosRankSum
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ClippingRankSum
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InbreedingCoeff
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FS
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QD
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GenotypeDepth
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variant carriers: 1

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele num: 66594
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

MQRankSum
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QD
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FS
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BaseQRankSum
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ReadPosRankSum
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VQSLOD
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ClippingRankSum
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MQ
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InbreedingCoeff
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DP
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele num: 16174
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9800
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
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InbreedingCoeff
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DP
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MQRankSum
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QD
type: SiteQuality
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FS
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BaseQRankSum
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ReadPosRankSum
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ClippingRankSum
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.501907422426482e-5
allele num: 66582
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.391e1

ReadPosRankSum
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BaseQRankSum
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MQ
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FS
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VQSLOD
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ClippingRankSum
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InbreedingCoeff
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DP
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MQRankSum
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SIO_000300: 7.03e-1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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African
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European (Non-Finnish)
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South Asian
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East Asian
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DP
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QD
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FS
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ClippingRankSum
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InbreedingCoeff
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ReadPosRankSum
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MQRankSum
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VQSLOD
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BaseQRankSum
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MQ
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GenotypeDepth
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variant carriers: 350

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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variant carriers: 1684

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele count: 2630
allele frequency: 2.275480186883544e-1
allele num: 11558
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East Asian
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allele frequency: 2.527281170188066e-1
allele num: 8614
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European (Non-Finnish)
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allele count: 16932
allele frequency: 2.550768303705935e-1
allele num: 66380
num of homozygotes: 2184

African
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allele count: 2619
allele frequency: 2.674632352941176e-1
allele num: 9792
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South Asian
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allele count: 2976
allele frequency: 1.888324873096447e-1
allele num: 15760
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European (Finnish)
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allele count: 1579
allele frequency: 2.390251286709053e-1
allele num: 6606
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Other
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allele count: 203
allele frequency: 2.265625e-1
allele num: 896
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MQRankSum
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ReadPosRankSum
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FS
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QD
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VQSLOD
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BaseQRankSum
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InbreedingCoeff
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MQ
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ClippingRankSum
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 1.02124183006536e-4
allele num: 9792
num of homozygotes: 0

Latino
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num of homozygotes: 0

Other
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European (Non-Finnish)
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European (Finnish)
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South Asian
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East Asian
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ClippingRankSum
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FS
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DP
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MQRankSum
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BaseQRankSum
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QD
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VQSLOD
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ReadPosRankSum
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MQ
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InbreedingCoeff
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele num: 66280
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East Asian
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Latino
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African
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South Asian
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MQ
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InbreedingCoeff
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BaseQRankSum
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ReadPosRankSum
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MQRankSum
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FS
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VQSLOD
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ClippingRankSum
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DP
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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Latino
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South Asian
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European (Finnish)
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Other
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European (Non-Finnish)
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VQSLOD
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InbreedingCoeff
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QD
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FS
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ReadPosRankSum
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MQ
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BaseQRankSum
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MQRankSum
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DP
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ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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African
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allele frequency: 0.0e0
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European (Non-Finnish)
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East Asian
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allele frequency: 0.0e0
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European (Finnish)
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Latino
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South Asian
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ReadPosRankSum
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BaseQRankSum
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FS
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MQRankSum
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DP
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MQ
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QD
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VQSLOD
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InbreedingCoeff
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ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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num of homozygotes: 0

East Asian
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African
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European (Non-Finnish)
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Latino
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South Asian
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Other
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BaseQRankSum
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MQ
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MQRankSum
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QD
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FS
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DP
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VQSLOD
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ReadPosRankSum
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InbreedingCoeff
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ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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European (Finnish)
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East Asian
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South Asian
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Other
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African
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European (Non-Finnish)
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ClippingRankSum
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VQSLOD
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FS
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MQ
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BaseQRankSum
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ReadPosRankSum
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InbreedingCoeff
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QD
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MQRankSum
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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African
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Latino
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East Asian
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European (Non-Finnish)
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South Asian
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QD
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DP
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InbreedingCoeff
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BaseQRankSum
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MQRankSum
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FS
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VQSLOD
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ReadPosRankSum
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ClippingRankSum
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MQ
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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Latino
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South Asian
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African
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Other
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European (Non-Finnish)
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DP
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ReadPosRankSum
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ClippingRankSum
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BaseQRankSum
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FS
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VQSLOD
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InbreedingCoeff
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MQRankSum
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MQ
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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Latino
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European (Non-Finnish)
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European (Finnish)
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African
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South Asian
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FS
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MQ
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VQSLOD
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DP
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MQRankSum
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ClippingRankSum
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BaseQRankSum
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ReadPosRankSum
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InbreedingCoeff
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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num of homozygotes: 0

European (Finnish)
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Other
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European (Non-Finnish)
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Latino
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East Asian
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African
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FS
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InbreedingCoeff
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BaseQRankSum
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ClippingRankSum
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ReadPosRankSum
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QD
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MQRankSum
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VQSLOD
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MQ
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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Latino
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East Asian
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European (Finnish)
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African
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Other
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South Asian
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DP
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BaseQRankSum
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MQRankSum
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MQ
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VQSLOD
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ReadPosRankSum
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QD
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FS
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ClippingRankSum
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InbreedingCoeff
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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European (Finnish)
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African
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European (Non-Finnish)
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South Asian
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Latino
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FS
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DP
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InbreedingCoeff
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ReadPosRankSum
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MQ
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QD
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VQSLOD
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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East Asian
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European (Finnish)
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African
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Latino
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European (Non-Finnish)
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FS
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MQ
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ReadPosRankSum
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MQRankSum
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VQSLOD
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ClippingRankSum
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QD
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DP
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BaseQRankSum
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InbreedingCoeff
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 4474
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GenotypeQuality
all individuals: 3344
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9802
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498441620714457e-5
allele num: 66736
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.2e0

BaseQRankSum
type: SiteQuality
SIO_000300: 6.3e-1

FS
type: SiteQuality
SIO_000300: 1.2161e1

QD
type: SiteQuality
SIO_000300: 8.6e0

VQSLOD
type: SiteQuality
SIO_000300: -2.689e0

MQRankSum
type: SiteQuality
SIO_000300: 9.399999999999999e-1

MQ
type: SiteQuality
SIO_000300: 5.96e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.305e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.0e-4

DP
type: SiteQuality
SIO_000300: 2.793003e6

GenotypeDepth
all individuals: 16
bin: 1.25e1
variant carriers: 1

GenotypeDepth
all individuals: 18
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variant carriers: 1

GenotypeDepth
all individuals: 6471
bin: 4.25e1
variant carriers: 61

GenotypeDepth
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variant carriers: 5450

GenotypeDepth
all individuals: 994
bin: 6.75e1
variant carriers: 388

GenotypeDepth
all individuals: 964
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variant carriers: 491

GenotypeQuality
all individuals: 23393
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variant carriers: 9650

GenotypeQuality
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GenotypeQuality
all individuals: 7
bin: 1.25e1
variant carriers: 2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 4
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 1

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1804
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variant carriers: 1

GenotypeQuality
all individuals: 3135
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 765
allele frequency: 6.608500345542502e-2
allele num: 11576
num of homozygotes: 26

South Asian
type: Population
allele count: 856
allele frequency: 5.184736523319201e-2
allele num: 16510
num of homozygotes: 32

African
type: Population
allele count: 180
allele frequency: 1.836359926545603e-2
allele num: 9802
num of homozygotes: 5

European (Finnish)
type: Population
allele count: 486
allele frequency: 7.348049591775023e-2
allele num: 6614
num of homozygotes: 25

East Asian
type: Population
allele count: 596
allele frequency: 6.914153132250581e-2
allele num: 8620
num of homozygotes: 22

European (Non-Finnish)
type: Population
allele count: 7224
allele frequency: 1.082474226804124e-1
allele num: 66736
num of homozygotes: 410

Other
type: Population
allele count: 74
allele frequency: 8.222222222222222e-2
allele num: 900
num of homozygotes: 5

MQ
type: SiteQuality
SIO_000300: 5.959e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.42e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.05e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.171e0

FS
type: SiteQuality
SIO_000300: 5.679999999999999e-1

DP
type: SiteQuality
SIO_000300: 3.231376e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.12e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.11e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.3e-1

QD
type: SiteQuality
SIO_000300: 1.427e1

GenotypeDepth
all individuals: 441
bin: 8.75e1
variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 15
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3793
bin: 9.25e1
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
all individuals: 2082
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variant carriers: 0

GenotypeQuality
all individuals: 13803
bin: 6.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9802
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498441620714457e-5
allele num: 66736
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.928e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.99e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.4e-1

VQSLOD
type: SiteQuality
SIO_000300: 9.46e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.19e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.15e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.6e-3

QD
type: SiteQuality
SIO_000300: 1.277e1

MQ
type: SiteQuality
SIO_000300: 5.939e1

DP
type: SiteQuality
SIO_000300: 2.742221e6

GenotypeDepth
all individuals: 10
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 10093
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 1

GenotypeDepth
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GenotypeQuality
all individuals: 2
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variant carriers: 0

GenotypeQuality
all individuals: 3
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GenotypeQuality
all individuals: 4817
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 4
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variant carriers: 0

GenotypeQuality
all individuals: 4
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variant carriers: 0

GenotypeQuality
all individuals: 2
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variant carriers: 0

GenotypeQuality
all individuals: 11
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variant carriers: 0

GenotypeQuality
all individuals: 115
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 7124
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 4
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variant carriers: 0

GenotypeQuality
all individuals: 3793
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2082
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variant carriers: 0

GenotypeQuality
all individuals: 20574
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 13816
bin: 6.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.4983967155144e-5
allele num: 66738
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9802
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.427e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.05e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.07e0

DP
type: SiteQuality
SIO_000300: 2.74222e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.7e-3

MQ
type: SiteQuality
SIO_000300: 5.936e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.11e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.515e1

VQSLOD
type: SiteQuality
SIO_000300: 4.57e-1

GenotypeDepth
all individuals: 10
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2263
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1594
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variant carriers: 0

GenotypeDepth
all individuals: 7633
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variant carriers: 0

GenotypeDepth
all individuals: 441
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variant carriers: 0

GenotypeDepth
all individuals: 380
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
all individuals: 502
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variant carriers: 0

GenotypeDepth
all individuals: 2935
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variant carriers: 1

GenotypeQuality
all individuals: 114
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variant carriers: 0

GenotypeQuality
all individuals: 4
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GenotypeQuality
all individuals: 3
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variant carriers: 0

GenotypeQuality
all individuals: 4
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 7124
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9800
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.4983967155144e-5
allele num: 66738
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.32e0

DP
type: SiteQuality
SIO_000300: 2.742079e6

BaseQRankSum
type: SiteQuality
SIO_000300: 7.62e-1

MQ
type: SiteQuality
SIO_000300: 6.026e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.4e-3

FS
type: SiteQuality
SIO_000300: 6.883e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.39e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.55e0

QD
type: SiteQuality
SIO_000300: 1.806e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.2e-1

GenotypeDepth
all individuals: 10
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 1602
bin: 2.25e1
variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 3

GenotypeDepth
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variant carriers: 1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeQuality
all individuals: 5
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 13825
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

African
type: Population
allele count: 4
allele frequency: 4.080799836768007e-4
allele num: 9802
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66738
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.415e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.51e0

MQ
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -6.14e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.68e0

MQRankSum
type: SiteQuality
SIO_000300: 8.1e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.55e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.5e-3

DP
type: SiteQuality
SIO_000300: 2.742205e6

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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bin: 4.25e1
variant carriers: 1

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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variant carriers: 1

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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variant carriers: 1

GenotypeDepth
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variant carriers: 3

GenotypeDepth
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GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 20579
bin: 9.75e1
variant carriers: 8

GenotypeQuality
all individuals: 3023
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
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num of homozygotes: 0

South Asian
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allele frequency: 5.451241671714113e-4
allele num: 16510
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East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66738
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

ReadPosRankSum
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SIO_000300: -1.9e-1

VQSLOD
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ClippingRankSum
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InbreedingCoeff
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FS
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MQ
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MQRankSum
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DP
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QD
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BaseQRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

European (Non-Finnish)
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allele count: 1
allele frequency: 1.498441620714457e-5
allele num: 66736
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

BaseQRankSum
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SIO_000300: -1.576e0

ClippingRankSum
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InbreedingCoeff
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VQSLOD
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ReadPosRankSum
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MQRankSum
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FS
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DP
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QD
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MQ
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
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allele count: 1
allele frequency: 1.159285879897983e-4
allele num: 8626
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9802
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66736
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.944e1

DP
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SIO_000300: 2.741885e6

FS
type: SiteQuality
SIO_000300: 8.880000000000001e0

MQRankSum
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BaseQRankSum
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ClippingRankSum
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ReadPosRankSum
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SIO_000300: -1.489e0

InbreedingCoeff
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QD
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SIO_000300: 1.236e1

VQSLOD
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SIO_000300: -1.283e0

GenotypeDepth
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variant carriers: 1

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 6.661821705426356e-4
allele num: 16512
num of homozygotes: 1

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 8.640055296353897e-5
allele num: 11574
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.498441620714457e-5
allele num: 66736
num of homozygotes: 0

FS
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SIO_000300: 0.0e0

InbreedingCoeff
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VQSLOD
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ClippingRankSum
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BaseQRankSum
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MQ
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ReadPosRankSum
type: SiteQuality
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MQRankSum
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DP
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QD
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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num of homozygotes: 0

Other
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East Asian
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South Asian
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Latino
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European (Finnish)
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InbreedingCoeff
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DP
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MQRankSum
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FS
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QD
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ReadPosRankSum
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ClippingRankSum
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BaseQRankSum
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VQSLOD
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MQ
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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African
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allele frequency: 1.020408163265306e-4
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European (Finnish)
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European (Non-Finnish)
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East Asian
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South Asian
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Other
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FS
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VQSLOD
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ClippingRankSum
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InbreedingCoeff
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MQ
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ReadPosRankSum
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MQRankSum
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DP
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QD
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BaseQRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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Latino
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European (Finnish)
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allele frequency: 0.0e0
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Other
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European (Non-Finnish)
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allele num: 66722
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 7.714e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.36e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.3e-3

VQSLOD
type: SiteQuality
SIO_000300: 1.85e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.024e0

MQRankSum
type: SiteQuality
SIO_000300: -4.47e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 2.739182e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.47e0

QD
type: SiteQuality
SIO_000300: 1.243e1

GenotypeDepth
all individuals: 1055
bin: 6.75e1
variant carriers: 452

GenotypeDepth
all individuals: 5511
bin: 4.75e1
variant carriers: 1383

GenotypeDepth
all individuals: 12056
bin: 3.25e1
variant carriers: 573

GenotypeDepth
all individuals: 489
bin: 8.25e1
variant carriers: 142

GenotypeDepth
all individuals: 2237
bin: 5.75e1
variant carriers: 993

GenotypeDepth
all individuals: 584
bin: 7.75e1
variant carriers: 206

GenotypeQuality
all individuals: 151
bin: 5.75e1
variant carriers: 8

GenotypeQuality
all individuals: 3120
bin: 9.25e1
variant carriers: 7

GenotypeQuality
all individuals: 145
bin: 4.75e1
variant carriers: 2

GenotypeQuality
all individuals: 2756
bin: 7.25e1
variant carriers: 6

GenotypeQuality
all individuals: 20
bin: 2.5e0
variant carriers: 1

GenotypeQuality
all individuals: 313
bin: 3.25e1
variant carriers: 1

GenotypeQuality
all individuals: 142
bin: 4.25e1
variant carriers: 5

GenotypeQuality
all individuals: 16
bin: 1.25e1
variant carriers: 4

GenotypeQuality
all individuals: 129
bin: 5.25e1
variant carriers: 4

GenotypeQuality
all individuals: 4284
bin: 8.25e1
variant carriers: 10

GenotypeQuality
all individuals: 12247
bin: 6.25e1
variant carriers: 4

GenotypeQuality
all individuals: 4659
bin: 7.75e1
variant carriers: 7

GenotypeQuality
all individuals: 6473
bin: 6.75e1
variant carriers: 5

GenotypeQuality
all individuals: 32
bin: 7.5e0
variant carriers: 2

GenotypeQuality
all individuals: 275
bin: 3.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1801
bin: 8.75e1
variant carriers: 7

GenotypeQuality
all individuals: 204
bin: 2.75e1
variant carriers: 4

GenotypeQuality
all individuals: 410
bin: 2.25e1
variant carriers: 4

GenotypeQuality
all individuals: 12
bin: 1.75e1
variant carriers: 3

GenotypeQuality
all individuals: 23223
bin: 9.75e1
variant carriers: 9569

European (Non-Finnish)
type: Population
allele count: 7199
allele frequency: 1.080541546589817e-1
allele num: 66624
num of homozygotes: 395

European (Finnish)
type: Population
allele count: 485
allele frequency: 7.335148215366001e-2
allele num: 6612
num of homozygotes: 24

South Asian
type: Population
allele count: 854
allele frequency: 5.173876166242578e-2
allele num: 16506
num of homozygotes: 31

Latino
type: Population
allele count: 764
allele frequency: 6.605568044267682e-2
allele num: 11566
num of homozygotes: 26

East Asian
type: Population
allele count: 594
allele frequency: 6.911798929485688e-2
allele num: 8594
num of homozygotes: 21

African
type: Population
allele count: 180
allele frequency: 1.838235294117647e-2
allele num: 9792
num of homozygotes: 5

Other
type: Population
allele count: 74
allele frequency: 8.240534521158129e-2
allele num: 898
num of homozygotes: 5

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.8e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.92e0

MQ
type: SiteQuality
SIO_000300: 5.965e1

QD
type: SiteQuality
SIO_000300: 2.016e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.88e-2

MQRankSum
type: SiteQuality
SIO_000300: 4.7e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.56e0

DP
type: SiteQuality
SIO_000300: 2.702592e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.44e-1

GenotypeDepth
all individuals: 417
bin: 8.75e1
variant carriers: 1

GenotypeDepth
all individuals: 3104
bin: 5.25e1
variant carriers: 1

GenotypeDepth
all individuals: 624
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5375
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variant carriers: 0

GenotypeDepth
all individuals: 444
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variant carriers: 0

GenotypeDepth
all individuals: 7842
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variant carriers: 0

GenotypeQuality
all individuals: 252
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 371
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18775
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 9
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2177
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 184
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 114
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 204
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 222
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 384
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3065
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6990
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5395
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 447
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12899
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5042
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3843
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.499640028797696e-5
allele num: 66672
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8602
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9792
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.416e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.6e-3

MQRankSum
type: SiteQuality
SIO_000300: -3.12e-1

MQ
type: SiteQuality
SIO_000300: 5.962e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.35e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.1e-1

DP
type: SiteQuality
SIO_000300: 2.624562e6

VQSLOD
type: SiteQuality
SIO_000300: 1.58e0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.65e-1

GenotypeDepth
all individuals: 1812
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1149
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3102
bin: 5.25e1
variant carriers: 1

GenotypeDepth
all individuals: 484
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2674
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 352
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variant carriers: 0

GenotypeQuality
all individuals: 3030
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 300
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 291
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11586
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 410
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2174
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6753
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5028
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 750
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 498
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 402
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 616
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 534
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5366
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18768
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 3841
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 2
allele frequency: 1.729206294310911e-4
allele num: 11566
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66652
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9794
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8586
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.651e1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.3e-1

DP
type: SiteQuality
SIO_000300: 2.610386e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.49e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.98e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.5e-3

MQRankSum
type: SiteQuality
SIO_000300: 7.25e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.49e-1

FS
type: SiteQuality
SIO_000300: 2.068e0

GenotypeDepth
all individuals: 8175
bin: 2.75e1
variant carriers: 720

GenotypeDepth
all individuals: 12155
bin: 3.25e1
variant carriers: 1238

GenotypeDepth
all individuals: 7821
bin: 4.25e1
variant carriers: 1478

GenotypeDepth
all individuals: 2664
bin: 9.75e1
variant carriers: 516

GenotypeDepth
all individuals: 5342
bin: 4.75e1
variant carriers: 1243

GenotypeDepth
all individuals: 542
bin: 1.25e1
variant carriers: 40

GenotypeQuality
all individuals: 35
bin: 2.5e0
variant carriers: 2

GenotypeQuality
all individuals: 6195
bin: 6.75e1
variant carriers: 5

GenotypeQuality
all individuals: 156
bin: 5.75e1
variant carriers: 6

GenotypeQuality
all individuals: 25
bin: 1.75e1
variant carriers: 3

GenotypeQuality
all individuals: 1787
bin: 8.75e1
variant carriers: 6

GenotypeQuality
all individuals: 221
bin: 5.25e1
variant carriers: 3

GenotypeQuality
all individuals: 418
bin: 4.75e1
variant carriers: 2

GenotypeQuality
all individuals: 23188
bin: 9.75e1
variant carriers: 9563

GenotypeQuality
all individuals: 42
bin: 7.5e0
variant carriers: 3

GenotypeQuality
all individuals: 31
bin: 1.25e1
variant carriers: 5

GenotypeQuality
all individuals: 697
bin: 3.75e1
variant carriers: 1

GenotypeQuality
all individuals: 493
bin: 2.25e1
variant carriers: 4

GenotypeQuality
all individuals: 613
bin: 3.25e1
variant carriers: 1

GenotypeQuality
all individuals: 298
bin: 2.75e1
variant carriers: 3

GenotypeQuality
all individuals: 387
bin: 4.25e1
variant carriers: 8

GenotypeQuality
all individuals: 2689
bin: 7.25e1
variant carriers: 8

GenotypeQuality
all individuals: 11216
bin: 6.25e1
variant carriers: 6

GenotypeQuality
all individuals: 4579
bin: 7.75e1
variant carriers: 8

GenotypeQuality
all individuals: 4237
bin: 8.25e1
variant carriers: 10

GenotypeQuality
all individuals: 3106
bin: 9.25e1
variant carriers: 7

South Asian
type: Population
allele count: 854
allele frequency: 5.175130287237911e-2
allele num: 16502
num of homozygotes: 31

East Asian
type: Population
allele count: 594
allele frequency: 6.926305970149253e-2
allele num: 8576
num of homozygotes: 21

African
type: Population
allele count: 180
allele frequency: 1.839362354383814e-2
allele num: 9786
num of homozygotes: 5

Other
type: Population
allele count: 74
allele frequency: 8.240534521158129e-2
allele num: 898
num of homozygotes: 5

European (Non-Finnish)
type: Population
allele count: 7191
allele frequency: 1.080346143445209e-1
allele num: 66562
num of homozygotes: 393

Latino
type: Population
allele count: 764
allele frequency: 6.615864218912365e-2
allele num: 11548
num of homozygotes: 26

European (Finnish)
type: Population
allele count: 484
allele frequency: 7.333333333333333e-2
allele num: 6600
num of homozygotes: 24

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.17e-1

MQ
type: SiteQuality
SIO_000300: 5.967e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 4.6e-2

DP
type: SiteQuality
SIO_000300: 2.604855e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.83e-2

VQSLOD
type: SiteQuality
SIO_000300: 3.97e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.496e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.55e-1

QD
type: SiteQuality
SIO_000300: 2.36e1

GenotypeDepth
all individuals: 380
bin: 8.75e1
variant carriers: 7

GenotypeDepth
all individuals: 471
bin: 7.75e1
variant carriers: 7

GenotypeDepth
all individuals: 7628
bin: 4.25e1
variant carriers: 89

GenotypeDepth
all individuals: 329
bin: 9.25e1
variant carriers: 6

GenotypeDepth
all individuals: 708
bin: 6.75e1
variant carriers: 10

GenotypeDepth
all individuals: 4856
bin: 4.75e1
variant carriers: 60

GenotypeQuality
all individuals: 548
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4932
bin: 8.25e1
variant carriers: 2

GenotypeQuality
all individuals: 674
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6904
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 5421
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 799
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3146
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 372
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 383
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2097
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11236
bin: 6.25e1
variant carriers: 2

GenotypeQuality
all individuals: 16540
bin: 9.75e1
variant carriers: 542

GenotypeQuality
all individuals: 41
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GenotypeQuality
all individuals: 41
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1347
bin: 3.75e1
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GenotypeQuality
all individuals: 3680
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variant carriers: 0

GenotypeQuality
all individuals: 883
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1328
bin: 4.75e1
variant carriers: 0

Latino
type: Population
allele count: 28
allele frequency: 2.421726344923024e-3
allele num: 11562
num of homozygotes: 0

African
type: Population
allele count: 522
allele frequency: 5.339607201309329e-2
allele num: 9776
num of homozygotes: 17

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.513317191283293e-4
allele num: 6608
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.211680600993578e-4
allele num: 16506
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8556
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 11
allele frequency: 1.651701252289859e-4
allele num: 66598
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.116071428571429e-3
allele num: 896
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.04e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.27e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 4.83e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.22e-1

DP
type: SiteQuality
SIO_000300: 2.531141e6

MQRankSum
type: SiteQuality
SIO_000300: 1.64e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.75e0

QD
type: SiteQuality
SIO_000300: 1.747e1

GenotypeDepth
all individuals: 11486
bin: 3.25e1
variant carriers: 7

GenotypeDepth
all individuals: 7588
bin: 4.25e1
variant carriers: 4

GenotypeDepth
all individuals: 2553
bin: 9.75e1
variant carriers: 6

GenotypeDepth
all individuals: 2629
bin: 5.25e1
variant carriers: 3

GenotypeDepth
all individuals: 413
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variant carriers: 2

GenotypeDepth
all individuals: 8409
bin: 2.75e1
variant carriers: 2

GenotypeQuality
all individuals: 14
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3720
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 61
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variant carriers: 0

GenotypeQuality
all individuals: 34
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variant carriers: 0

GenotypeQuality
all individuals: 919
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1597
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16237
bin: 9.75e1
variant carriers: 51

GenotypeQuality
all individuals: 2220
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 371
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2113
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5435
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1559
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1036
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 521
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4963
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6534
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 272
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3142
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9616
bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8530
num of homozygotes: 0

African
type: Population
allele count: 47
allele frequency: 4.807692307692308e-3
allele num: 9776
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

Latino
type: Population
allele count: 4
allele frequency: 3.460207612456747e-4
allele num: 11560
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66562
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.36e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.85e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.09e0

MQRankSum
type: SiteQuality
SIO_000300: 2.71e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.519309e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.7e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -2.51e-1

QD
type: SiteQuality
SIO_000300: 1.574e1