2-242440176-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 242440176
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 242440176
    reference: chr 2
allele count: 36
allele frequency: 2.969366040350385e-4
allele num: 121238
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000395104
  ensembl transcript: ENST00000413760
  gene symbol: STK25
  hgvsc: ENST00000413760.1:c.15C>T
  hgvsp: ENST00000413760.1:c.15C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000444886
  ensembl transcript: ENST00000543554
  gene symbol: STK25
  hgvsc: ENST00000543554.1:c.15C>T
  hgvsp: ENST00000543554.1:c.15C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000401114
  ensembl transcript: ENST00000435225
  gene symbol: STK25
  hgvsc: ENST00000435225.1:c.15C>T
  hgvsp: ENST00000435225.1:c.15C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000399212
  ensembl transcript: ENST00000450497
  gene symbol: STK25
  hgvsc: ENST00000450497.1:c.15C>T
  hgvsp: ENST00000450497.1:c.15C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000385541
  ensembl transcript: ENST00000405585
  gene symbol: STK25
  hgvsc: ENST00000405585.1:c.66C>T
  hgvsp: ENST00000405585.1:c.66C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000406208
  ensembl transcript: ENST00000439101
  gene symbol: STK25
  hgvsc: ENST00000439101.1:c.15C>T
  hgvsp: ENST00000439101.1:c.15C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000384444
  ensembl transcript: ENST00000405883
  gene symbol: STK25
  hgvsc: ENST00000405883.3:c.66C>T
  hgvsp: ENST00000405883.3:c.66C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000446008
  ensembl transcript: ENST00000535007
  gene symbol: STK25
  hgvsc: ENST00000535007.1:c.15C>T
  hgvsp: ENST00000535007.1:c.15C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000461760
  gene symbol: STK25
  hgvsc: ENST00000461760.1:n.77-480C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000492127
  gene symbol: STK25
  hgvsc: ENST00000492127.1:n.257C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000412617
  ensembl transcript: ENST00000436402
  gene symbol: STK25
  hgvsc: ENST00000436402.1:c.297C>T
  hgvsp: ENST00000436402.1:c.297C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000325748
  ensembl transcript: ENST00000316586
  gene symbol: STK25
  hgvsc: ENST00000316586.4:c.297C>T
  hgvsp: ENST00000316586.4:c.297C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000384162
  ensembl transcript: ENST00000403346
  gene symbol: STK25
  hgvsc: ENST00000403346.3:c.297C>T
  hgvsp: ENST00000403346.3:c.297C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000403866
  ensembl transcript: ENST00000440109
  gene symbol: STK25
  hgvsc: ENST00000440109.1:c.15C>T
  hgvsp: ENST00000440109.1:c.15C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000404960
  ensembl transcript: ENST00000429279
  gene symbol: STK25
  hgvsc: ENST00000429279.1:c.15C>T
  hgvsp: ENST00000429279.1:c.15C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000417020
  ensembl transcript: ENST00000424537
  gene symbol: STK25
  hgvsc: ENST00000424537.1:c.31-480C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000403607
  ensembl transcript: ENST00000442307
  gene symbol: STK25
  hgvsc: ENST00000442307.1:c.15C>T
  hgvsp: ENST00000442307.1:c.15C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000479442
  gene symbol: STK25
  hgvsc: ENST00000479442.1:n.111C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000385687
  ensembl transcript: ENST00000401869
  gene symbol: STK25
  hgvsc: ENST00000401869.1:c.297C>T
  hgvsp: ENST00000401869.1:c.297C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11404
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Gly99Gly
num of homozygotes: 1
population: European (Non-Finnish)
population: Latino
population: East Asian
population: African
population: European (Finnish)
population: Other
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff

http://identifiers.org/exac.variant/2-242440178-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 242440178
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 242440178
    reference: chr 2
allele count: 9
allele frequency: 7.423415100875964e-5
allele num: 121238
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000461760
  gene symbol: STK25
  hgvsc: ENST00000461760.1:n.77-482G>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000492127
  gene symbol: STK25
  hgvsc: ENST00000492127.1:n.255G>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000395104
  ensembl transcript: ENST00000413760
  gene symbol: STK25
  hgvsc: ENST00000413760.1:c.13G>T
  hgvsp: ENSP00000395104.1:p.Gly5Cys
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000417020
  ensembl transcript: ENST00000424537
  gene symbol: STK25
  hgvsc: ENST00000424537.1:c.31-482G>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000384444
  ensembl transcript: ENST00000405883
  gene symbol: STK25
  hgvsc: ENST00000405883.3:c.64G>T
  hgvsp: ENSP00000384444.3:p.Gly22Cys
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000404960
  ensembl transcript: ENST00000429279
  gene symbol: STK25
  hgvsc: ENST00000429279.1:c.13G>T
  hgvsp: ENSP00000404960.1:p.Gly5Cys
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000399212
  ensembl transcript: ENST00000450497
  gene symbol: STK25
  hgvsc: ENST00000450497.1:c.13G>T
  hgvsp: ENSP00000399212.1:p.Gly5Cys
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000479442
  gene symbol: STK25
  hgvsc: ENST00000479442.1:n.109G>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000403866
  ensembl transcript: ENST00000440109
  gene symbol: STK25
  hgvsc: ENST00000440109.1:c.13G>T
  hgvsp: ENSP00000403866.1:p.Gly5Cys
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000496159
  gene symbol: STK25
  hgvsc: ENST00000496159.1:n.205G>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000444886
  ensembl transcript: ENST00000543554
  gene symbol: STK25
  hgvsc: ENST00000543554.1:c.13G>T
  hgvsp: ENSP00000444886.1:p.Gly5Cys
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000403607
  ensembl transcript: ENST00000442307
  gene symbol: STK25
  hgvsc: ENST00000442307.1:c.13G>T
  hgvsp: ENSP00000403607.1:p.Gly5Cys
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000325748
  ensembl transcript: ENST00000316586
  gene symbol: STK25
  hgvsc: ENST00000316586.4:c.295G>T
  hgvsp: ENSP00000325748.4:p.Gly99Cys
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000385541
  ensembl transcript: ENST00000405585
  gene symbol: STK25
  hgvsc: ENST00000405585.1:c.64G>T
  hgvsp: ENSP00000385541.1:p.Gly22Cys
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000412617
  ensembl transcript: ENST00000436402
  gene symbol: STK25
  hgvsc: ENST00000436402.1:c.295G>T
  hgvsp: ENSP00000412617.1:p.Gly99Cys
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000406208
  ensembl transcript: ENST00000439101
  gene symbol: STK25
  hgvsc: ENST00000439101.1:c.13G>T
  hgvsp: ENSP00000406208.1:p.Gly5Cys
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000452891
  gene symbol: STK25
  hgvsc: ENST00000452891.1:n.575G>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000401114
  ensembl transcript: ENST00000435225
  gene symbol: STK25
  hgvsc: ENST00000435225.1:c.13G>T
  hgvsp: ENSP00000401114.1:p.Gly5Cys
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000446008
  ensembl transcript: ENST00000535007
  gene symbol: STK25
  hgvsc: ENST00000535007.1:c.13G>T
  hgvsp: ENSP00000446008.1:p.Gly5Cys
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000384162
  ensembl transcript: ENST00000403346
  gene symbol: STK25
  hgvsc: ENST00000403346.3:c.295G>T
  hgvsp: ENSP00000384162.3:p.Gly99Cys
  variant of: http://identifiers.org/hgnc/11404
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Gly99Cys
num of homozygotes: 0
population: African
population: Other
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: South Asian
reference allele: C
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: VQSLOD

2-242440191-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 242440191
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 242440191
    reference: chr 2
allele count: 1
allele frequency: 8.248647221855616e-6
allele num: 121232
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000384162
  ensembl transcript: ENST00000403346
  gene symbol: STK25
  hgvsc: ENST00000403346.3:c.282C>T
  hgvsp: ENST00000403346.3:c.282C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000401114
  ensembl transcript: ENST00000435225
  gene symbol: STK25
  hgvsc: ENST00000435225.1:c.-1C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000385687
  ensembl transcript: ENST00000401869
  gene symbol: STK25
  hgvsc: ENST00000401869.1:c.282C>T
  hgvsp: ENST00000401869.1:c.282C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000412617
  ensembl transcript: ENST00000436402
  gene symbol: STK25
  hgvsc: ENST00000436402.1:c.282C>T
  hgvsp: ENST00000436402.1:c.282C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000403607
  ensembl transcript: ENST00000442307
  gene symbol: STK25
  hgvsc: ENST00000442307.1:c.-1C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000325748
  ensembl transcript: ENST00000316586
  gene symbol: STK25
  hgvsc: ENST00000316586.4:c.282C>T
  hgvsp: ENST00000316586.4:c.282C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000479442
  gene symbol: STK25
  hgvsc: ENST00000479442.1:n.96C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000399212
  ensembl transcript: ENST00000450497
  gene symbol: STK25
  hgvsc: ENST00000450497.1:c.-1C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000406208
  ensembl transcript: ENST00000439101
  gene symbol: STK25
  hgvsc: ENST00000439101.1:c.-1C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000395104
  ensembl transcript: ENST00000413760
  gene symbol: STK25
  hgvsc: ENST00000413760.1:c.-1C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000452891
  gene symbol: STK25
  hgvsc: ENST00000452891.1:n.562C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000385541
  ensembl transcript: ENST00000405585
  gene symbol: STK25
  hgvsc: ENST00000405585.1:c.51C>T
  hgvsp: ENST00000405585.1:c.51C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000384444
  ensembl transcript: ENST00000405883
  gene symbol: STK25
  hgvsc: ENST00000405883.3:c.51C>T
  hgvsp: ENST00000405883.3:c.51C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000417020
  ensembl transcript: ENST00000424537
  gene symbol: STK25
  hgvsc: ENST00000424537.1:c.31-495C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000403866
  ensembl transcript: ENST00000440109
  gene symbol: STK25
  hgvsc: ENST00000440109.1:c.-1C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000404960
  ensembl transcript: ENST00000429279
  gene symbol: STK25
  hgvsc: ENST00000429279.1:c.-1C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000492127
  gene symbol: STK25
  hgvsc: ENST00000492127.1:n.242C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000446008
  ensembl transcript: ENST00000535007
  gene symbol: STK25
  hgvsc: ENST00000535007.1:c.-1C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000444886
  ensembl transcript: ENST00000543554
  gene symbol: STK25
  hgvsc: ENST00000543554.1:c.-1C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000496159
  gene symbol: STK25
  hgvsc: ENST00000496159.1:n.192C>T
  variant of: http://identifiers.org/hgnc/11404
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Ile94Ile
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Other
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum

2-242440194-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 242440194
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 242440194
    reference: chr 2
allele count: 1
allele frequency: 8.248919391559706e-6
allele num: 121228
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000404960
  ensembl transcript: ENST00000429279
  gene symbol: STK25
  hgvsc: ENST00000429279.1:c.-4C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000406208
  ensembl transcript: ENST00000439101
  gene symbol: STK25
  hgvsc: ENST00000439101.1:c.-4C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000385541
  ensembl transcript: ENST00000405585
  gene symbol: STK25
  hgvsc: ENST00000405585.1:c.48C>T
  hgvsp: ENST00000405585.1:c.48C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000385687
  ensembl transcript: ENST00000401869
  gene symbol: STK25
  hgvsc: ENST00000401869.1:c.279C>T
  hgvsp: ENST00000401869.1:c.279C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000444886
  ensembl transcript: ENST00000543554
  gene symbol: STK25
  hgvsc: ENST00000543554.1:c.-4C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000461760
  gene symbol: STK25
  hgvsc: ENST00000461760.1:n.77-498C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000403607
  ensembl transcript: ENST00000442307
  gene symbol: STK25
  hgvsc: ENST00000442307.1:c.-4C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000384444
  ensembl transcript: ENST00000405883
  gene symbol: STK25
  hgvsc: ENST00000405883.3:c.48C>T
  hgvsp: ENST00000405883.3:c.48C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000325748
  ensembl transcript: ENST00000316586
  gene symbol: STK25
  hgvsc: ENST00000316586.4:c.279C>T
  hgvsp: ENST00000316586.4:c.279C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000492127
  gene symbol: STK25
  hgvsc: ENST00000492127.1:n.239C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000412617
  ensembl transcript: ENST00000436402
  gene symbol: STK25
  hgvsc: ENST00000436402.1:c.279C>T
  hgvsp: ENST00000436402.1:c.279C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000399212
  ensembl transcript: ENST00000450497
  gene symbol: STK25
  hgvsc: ENST00000450497.1:c.-4C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000401114
  ensembl transcript: ENST00000435225
  gene symbol: STK25
  hgvsc: ENST00000435225.1:c.-4C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000496159
  gene symbol: STK25
  hgvsc: ENST00000496159.1:n.189C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000417020
  ensembl transcript: ENST00000424537
  gene symbol: STK25
  hgvsc: ENST00000424537.1:c.31-498C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000479442
  gene symbol: STK25
  hgvsc: ENST00000479442.1:n.93C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000384162
  ensembl transcript: ENST00000403346
  gene symbol: STK25
  hgvsc: ENST00000403346.3:c.279C>T
  hgvsp: ENST00000403346.3:c.279C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000452891
  gene symbol: STK25
  hgvsc: ENST00000452891.1:n.559C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000446008
  ensembl transcript: ENST00000535007
  gene symbol: STK25
  hgvsc: ENST00000535007.1:c.-4C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000395104
  ensembl transcript: ENST00000413760
  gene symbol: STK25
  hgvsc: ENST00000413760.1:c.-4C>T
  variant of: http://identifiers.org/hgnc/11404
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Ile93Ile
num of homozygotes: 0
population: Other
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Latino
population: East Asian
reference allele: G
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum

2-242440200-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 242440200
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 242440200
    reference: chr 2
allele count: 348
allele frequency: 2.871002871002871e-3
allele num: 121212
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000412617
  ensembl transcript: ENST00000436402
  gene symbol: STK25
  hgvsc: ENST00000436402.1:c.273A>G
  hgvsp: ENST00000436402.1:c.273A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000496159
  gene symbol: STK25
  hgvsc: ENST00000496159.1:n.183A>G
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000384444
  ensembl transcript: ENST00000405883
  gene symbol: STK25
  hgvsc: ENST00000405883.3:c.42A>G
  hgvsp: ENST00000405883.3:c.42A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000385687
  ensembl transcript: ENST00000401869
  gene symbol: STK25
  hgvsc: ENST00000401869.1:c.273A>G
  hgvsp: ENST00000401869.1:c.273A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000399212
  ensembl transcript: ENST00000450497
  gene symbol: STK25
  hgvsc: ENST00000450497.1:c.-10A>G
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000384162
  ensembl transcript: ENST00000403346
  gene symbol: STK25
  hgvsc: ENST00000403346.3:c.273A>G
  hgvsp: ENST00000403346.3:c.273A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000385541
  ensembl transcript: ENST00000405585
  gene symbol: STK25
  hgvsc: ENST00000405585.1:c.42A>G
  hgvsp: ENST00000405585.1:c.42A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000403607
  ensembl transcript: ENST00000442307
  gene symbol: STK25
  hgvsc: ENST00000442307.1:c.-10A>G
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000401114
  ensembl transcript: ENST00000435225
  gene symbol: STK25
  hgvsc: ENST00000435225.1:c.-10A>G
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000446008
  ensembl transcript: ENST00000535007
  gene symbol: STK25
  hgvsc: ENST00000535007.1:c.-10A>G
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000452891
  gene symbol: STK25
  hgvsc: ENST00000452891.1:n.553A>G
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000403866
  ensembl transcript: ENST00000440109
  gene symbol: STK25
  hgvsc: ENST00000440109.1:c.-10A>G
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000404960
  ensembl transcript: ENST00000429279
  gene symbol: STK25
  hgvsc: ENST00000429279.1:c.-10A>G
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000325748
  ensembl transcript: ENST00000316586
  gene symbol: STK25
  hgvsc: ENST00000316586.4:c.273A>G
  hgvsp: ENST00000316586.4:c.273A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000395104
  ensembl transcript: ENST00000413760
  gene symbol: STK25
  hgvsc: ENST00000413760.1:c.-10A>G
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000461760
  gene symbol: STK25
  hgvsc: ENST00000461760.1:n.77-504A>G
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000444886
  ensembl transcript: ENST00000543554
  gene symbol: STK25
  hgvsc: ENST00000543554.1:c.-10A>G
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000492127
  gene symbol: STK25
  hgvsc: ENST00000492127.1:n.233A>G
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000417020
  ensembl transcript: ENST00000424537
  gene symbol: STK25
  hgvsc: ENST00000424537.1:c.31-504A>G
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000483603
  gene symbol: STK25
  hgvsc: ENST00000483603.1:n.567A>G
  variant of: http://identifiers.org/hgnc/11404
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Leu91Leu
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
population: Other
population: European (Non-Finnish)
population: African
reference allele: T
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: FS

2-242440218-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 242440218
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 242440218
    reference: chr 2
allele count: 1
allele frequency: 8.25695648583932e-6
allele num: 121110
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000452891
  gene symbol: STK25
  hgvsc: ENST00000452891.1:n.535G>C
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000483603
  gene symbol: STK25
  hgvsc: ENST00000483603.1:n.556-7G>C
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000384162
  ensembl transcript: ENST00000403346
  gene symbol: STK25
  hgvsc: ENST00000403346.3:c.262-7G>C
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000412617
  ensembl transcript: ENST00000436402
  gene symbol: STK25
  hgvsc: ENST00000436402.1:c.262-7G>C
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000385541
  ensembl transcript: ENST00000405585
  gene symbol: STK25
  hgvsc: ENST00000405585.1:c.31-7G>C
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000395104
  ensembl transcript: ENST00000413760
  gene symbol: STK25
  hgvsc: ENST00000413760.1:c.-21-7G>C
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000496159
  gene symbol: STK25
  hgvsc: ENST00000496159.1:n.172-7G>C
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000444886
  ensembl transcript: ENST00000543554
  gene symbol: STK25
  hgvsc: ENST00000543554.1:c.-21-7G>C
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000384444
  ensembl transcript: ENST00000405883
  gene symbol: STK25
  hgvsc: ENST00000405883.3:c.31-7G>C
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000403607
  ensembl transcript: ENST00000442307
  gene symbol: STK25
  hgvsc: ENST00000442307.1:c.-21-7G>C
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000461760
  gene symbol: STK25
  hgvsc: ENST00000461760.1:n.77-522G>C
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000479442
  gene symbol: STK25
  hgvsc: ENST00000479442.1:n.69G>C
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000492127
  gene symbol: STK25
  hgvsc: ENST00000492127.1:n.222-7G>C
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000401114
  ensembl transcript: ENST00000435225
  gene symbol: STK25
  hgvsc: ENST00000435225.1:c.-21-7G>C
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000404960
  ensembl transcript: ENST00000429279
  gene symbol: STK25
  hgvsc: ENST00000429279.1:c.-21-7G>C
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000446008
  ensembl transcript: ENST00000535007
  gene symbol: STK25
  hgvsc: ENST00000535007.1:c.-21-7G>C
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000325748
  ensembl transcript: ENST00000316586
  gene symbol: STK25
  hgvsc: ENST00000316586.4:c.262-7G>C
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000406208
  ensembl transcript: ENST00000439101
  gene symbol: STK25
  hgvsc: ENST00000439101.1:c.-28G>C
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000417020
  ensembl transcript: ENST00000424537
  gene symbol: STK25
  hgvsc: ENST00000424537.1:c.31-522G>C
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000403866
  ensembl transcript: ENST00000440109
  gene symbol: STK25
  hgvsc: ENST00000440109.1:c.-21-7G>C
  variant of: http://identifiers.org/hgnc/11404
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: c.262-7G>C
num of homozygotes: 0
population: Latino
population: African
population: Other
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum

2-242440219-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 242440219
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 242440219
    reference: chr 2
allele count: 1
allele frequency: 8.258047467256841e-6
allele num: 121094
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000492127
  gene symbol: STK25
  hgvsc: ENST00000492127.1:n.222-8G>C
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000401114
  ensembl transcript: ENST00000435225
  gene symbol: STK25
  hgvsc: ENST00000435225.1:c.-21-8G>C
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000385687
  ensembl transcript: ENST00000401869
  gene symbol: STK25
  hgvsc: ENST00000401869.1:c.262-8G>C
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000483603
  gene symbol: STK25
  hgvsc: ENST00000483603.1:n.556-8G>C
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000403866
  ensembl transcript: ENST00000440109
  gene symbol: STK25
  hgvsc: ENST00000440109.1:c.-21-8G>C
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000446008
  ensembl transcript: ENST00000535007
  gene symbol: STK25
  hgvsc: ENST00000535007.1:c.-21-8G>C
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000384162
  ensembl transcript: ENST00000403346
  gene symbol: STK25
  hgvsc: ENST00000403346.3:c.262-8G>C
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000404960
  ensembl transcript: ENST00000429279
  gene symbol: STK25
  hgvsc: ENST00000429279.1:c.-21-8G>C
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000444886
  ensembl transcript: ENST00000543554
  gene symbol: STK25
  hgvsc: ENST00000543554.1:c.-21-8G>C
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000395104
  ensembl transcript: ENST00000413760
  gene symbol: STK25
  hgvsc: ENST00000413760.1:c.-21-8G>C
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000412617
  ensembl transcript: ENST00000436402
  gene symbol: STK25
  hgvsc: ENST00000436402.1:c.262-8G>C
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000403607
  ensembl transcript: ENST00000442307
  gene symbol: STK25
  hgvsc: ENST00000442307.1:c.-21-8G>C
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000384444
  ensembl transcript: ENST00000405883
  gene symbol: STK25
  hgvsc: ENST00000405883.3:c.31-8G>C
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000417020
  ensembl transcript: ENST00000424537
  gene symbol: STK25
  hgvsc: ENST00000424537.1:c.31-523G>C
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000496159
  gene symbol: STK25
  hgvsc: ENST00000496159.1:n.172-8G>C
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000385541
  ensembl transcript: ENST00000405585
  gene symbol: STK25
  hgvsc: ENST00000405585.1:c.31-8G>C
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000452891
  gene symbol: STK25
  hgvsc: ENST00000452891.1:n.534G>C
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000479442
  gene symbol: STK25
  hgvsc: ENST00000479442.1:n.68G>C
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000399212
  ensembl transcript: ENST00000450497
  gene symbol: STK25
  hgvsc: ENST00000450497.1:c.-29G>C
  variant of: http://identifiers.org/hgnc/11404
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: c.262-8G>C
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Other
population: East Asian
reference allele: C
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum

2-242440220-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 242440220
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 242440220
    reference: chr 2
allele count: 17
allele frequency: 1.403937632135306e-4
allele num: 121088
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000406208
  ensembl transcript: ENST00000439101
  gene symbol: STK25
  hgvsc: ENST00000439101.1:c.-30C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000385687
  ensembl transcript: ENST00000401869
  gene symbol: STK25
  hgvsc: ENST00000401869.1:c.262-9C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000404960
  ensembl transcript: ENST00000429279
  gene symbol: STK25
  hgvsc: ENST00000429279.1:c.-21-9C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000483603
  gene symbol: STK25
  hgvsc: ENST00000483603.1:n.556-9C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000452891
  gene symbol: STK25
  hgvsc: ENST00000452891.1:n.533C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000384444
  ensembl transcript: ENST00000405883
  gene symbol: STK25
  hgvsc: ENST00000405883.3:c.31-9C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000384162
  ensembl transcript: ENST00000403346
  gene symbol: STK25
  hgvsc: ENST00000403346.3:c.262-9C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000496159
  gene symbol: STK25
  hgvsc: ENST00000496159.1:n.172-9C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000492127
  gene symbol: STK25
  hgvsc: ENST00000492127.1:n.222-9C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000417020
  ensembl transcript: ENST00000424537
  gene symbol: STK25
  hgvsc: ENST00000424537.1:c.31-524C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000399212
  ensembl transcript: ENST00000450497
  gene symbol: STK25
  hgvsc: ENST00000450497.1:c.-30C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000412617
  ensembl transcript: ENST00000436402
  gene symbol: STK25
  hgvsc: ENST00000436402.1:c.262-9C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000403607
  ensembl transcript: ENST00000442307
  gene symbol: STK25
  hgvsc: ENST00000442307.1:c.-21-9C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000403866
  ensembl transcript: ENST00000440109
  gene symbol: STK25
  hgvsc: ENST00000440109.1:c.-21-9C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000479442
  gene symbol: STK25
  hgvsc: ENST00000479442.1:n.67C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000446008
  ensembl transcript: ENST00000535007
  gene symbol: STK25
  hgvsc: ENST00000535007.1:c.-21-9C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000401114
  ensembl transcript: ENST00000435225
  gene symbol: STK25
  hgvsc: ENST00000435225.1:c.-21-9C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000385541
  ensembl transcript: ENST00000405585
  gene symbol: STK25
  hgvsc: ENST00000405585.1:c.31-9C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000395104
  ensembl transcript: ENST00000413760
  gene symbol: STK25
  hgvsc: ENST00000413760.1:c.-21-9C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000444886
  ensembl transcript: ENST00000543554
  gene symbol: STK25
  hgvsc: ENST00000543554.1:c.-21-9C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000325748
  ensembl transcript: ENST00000316586
  gene symbol: STK25
  hgvsc: ENST00000316586.4:c.262-9C>T
  variant of: http://identifiers.org/hgnc/11404
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: Other
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP

2-242440221-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 242440221
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 242440221
    reference: chr 2
allele count: 20020
allele frequency: 1.653506888235488e-1
allele num: 121076
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000325748
  ensembl transcript: ENST00000316586
  gene symbol: STK25
  hgvsc: ENST00000316586.4:c.262-10C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000384162
  ensembl transcript: ENST00000403346
  gene symbol: STK25
  hgvsc: ENST00000403346.3:c.262-10C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000479442
  gene symbol: STK25
  hgvsc: ENST00000479442.1:n.66C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000385541
  ensembl transcript: ENST00000405585
  gene symbol: STK25
  hgvsc: ENST00000405585.1:c.31-10C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000492127
  gene symbol: STK25
  hgvsc: ENST00000492127.1:n.222-10C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000399212
  ensembl transcript: ENST00000450497
  gene symbol: STK25
  hgvsc: ENST00000450497.1:c.-31C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000384444
  ensembl transcript: ENST00000405883
  gene symbol: STK25
  hgvsc: ENST00000405883.3:c.31-10C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000395104
  ensembl transcript: ENST00000413760
  gene symbol: STK25
  hgvsc: ENST00000413760.1:c.-21-10C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000444886
  ensembl transcript: ENST00000543554
  gene symbol: STK25
  hgvsc: ENST00000543554.1:c.-21-10C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000403866
  ensembl transcript: ENST00000440109
  gene symbol: STK25
  hgvsc: ENST00000440109.1:c.-21-10C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000412617
  ensembl transcript: ENST00000436402
  gene symbol: STK25
  hgvsc: ENST00000436402.1:c.262-10C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000403607
  ensembl transcript: ENST00000442307
  gene symbol: STK25
  hgvsc: ENST00000442307.1:c.-21-10C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000406208
  ensembl transcript: ENST00000439101
  gene symbol: STK25
  hgvsc: ENST00000439101.1:c.-31C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000461760
  gene symbol: STK25
  hgvsc: ENST00000461760.1:n.77-525C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000446008
  ensembl transcript: ENST00000535007
  gene symbol: STK25
  hgvsc: ENST00000535007.1:c.-21-10C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000417020
  ensembl transcript: ENST00000424537
  gene symbol: STK25
  hgvsc: ENST00000424537.1:c.31-525C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000385687
  ensembl transcript: ENST00000401869
  gene symbol: STK25
  hgvsc: ENST00000401869.1:c.262-10C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000401114
  ensembl transcript: ENST00000435225
  gene symbol: STK25
  hgvsc: ENST00000435225.1:c.-21-10C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000496159
  gene symbol: STK25
  hgvsc: ENST00000496159.1:n.172-10C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000483603
  gene symbol: STK25
  hgvsc: ENST00000483603.1:n.556-10C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000404960
  ensembl transcript: ENST00000429279
  gene symbol: STK25
  hgvsc: ENST00000429279.1:c.-21-10C>T
  variant of: http://identifiers.org/hgnc/11404
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
num of homozygotes: 2038
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: QD

2-242440225-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 242440225
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 242440225
    reference: chr 2
allele count: 1
allele frequency: 8.269383434771103e-6
allele num: 120928
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000403607
  ensembl transcript: ENST00000442307
  gene symbol: STK25
  hgvsc: ENST00000442307.1:c.-21-14G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000496159
  gene symbol: STK25
  hgvsc: ENST00000496159.1:n.172-14G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000479442
  gene symbol: STK25
  hgvsc: ENST00000479442.1:n.62G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000404960
  ensembl transcript: ENST00000429279
  gene symbol: STK25
  hgvsc: ENST00000429279.1:c.-21-14G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000492127
  gene symbol: STK25
  hgvsc: ENST00000492127.1:n.222-14G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000403866
  ensembl transcript: ENST00000440109
  gene symbol: STK25
  hgvsc: ENST00000440109.1:c.-21-14G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000446008
  ensembl transcript: ENST00000535007
  gene symbol: STK25
  hgvsc: ENST00000535007.1:c.-21-14G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000452891
  gene symbol: STK25
  hgvsc: ENST00000452891.1:n.528G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000384444
  ensembl transcript: ENST00000405883
  gene symbol: STK25
  hgvsc: ENST00000405883.3:c.31-14G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000461760
  gene symbol: STK25
  hgvsc: ENST00000461760.1:n.77-529G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000385687
  ensembl transcript: ENST00000401869
  gene symbol: STK25
  hgvsc: ENST00000401869.1:c.262-14G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000399212
  ensembl transcript: ENST00000450497
  gene symbol: STK25
  hgvsc: ENST00000450497.1:c.-35G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000417020
  ensembl transcript: ENST00000424537
  gene symbol: STK25
  hgvsc: ENST00000424537.1:c.31-529G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000384162
  ensembl transcript: ENST00000403346
  gene symbol: STK25
  hgvsc: ENST00000403346.3:c.262-14G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000406208
  ensembl transcript: ENST00000439101
  gene symbol: STK25
  hgvsc: ENST00000439101.1:c.-35G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000401114
  ensembl transcript: ENST00000435225
  gene symbol: STK25
  hgvsc: ENST00000435225.1:c.-21-14G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000325748
  ensembl transcript: ENST00000316586
  gene symbol: STK25
  hgvsc: ENST00000316586.4:c.262-14G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000444886
  ensembl transcript: ENST00000543554
  gene symbol: STK25
  hgvsc: ENST00000543554.1:c.-21-14G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000483603
  gene symbol: STK25
  hgvsc: ENST00000483603.1:n.556-14G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000385541
  ensembl transcript: ENST00000405585
  gene symbol: STK25
  hgvsc: ENST00000405585.1:c.31-14G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000412617
  ensembl transcript: ENST00000436402
  gene symbol: STK25
  hgvsc: ENST00000436402.1:c.262-14G>A
  variant of: http://identifiers.org/hgnc/11404
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
population: South Asian
population: Latino
population: Other
reference allele: C
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: ClippingRankSum

2-242440232-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 242440232
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 242440232
    reference: chr 2
allele count: 1
allele frequency: 8.276501357346223e-6
allele num: 120824
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000452891
  gene symbol: STK25
  hgvsc: ENST00000452891.1:n.521T>C
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000403866
  ensembl transcript: ENST00000440109
  gene symbol: STK25
  hgvsc: ENST00000440109.1:c.-21-21T>C
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000385687
  ensembl transcript: ENST00000401869
  gene symbol: STK25
  hgvsc: ENST00000401869.1:c.262-21T>C
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000444886
  ensembl transcript: ENST00000543554
  gene symbol: STK25
  hgvsc: ENST00000543554.1:c.-21-21T>C
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000385541
  ensembl transcript: ENST00000405585
  gene symbol: STK25
  hgvsc: ENST00000405585.1:c.31-21T>C
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000406208
  ensembl transcript: ENST00000439101
  gene symbol: STK25
  hgvsc: ENST00000439101.1:c.-42T>C
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000384162
  ensembl transcript: ENST00000403346
  gene symbol: STK25
  hgvsc: ENST00000403346.3:c.262-21T>C
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000483603
  gene symbol: STK25
  hgvsc: ENST00000483603.1:n.556-21T>C
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000496159
  gene symbol: STK25
  hgvsc: ENST00000496159.1:n.172-21T>C
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000403607
  ensembl transcript: ENST00000442307
  gene symbol: STK25
  hgvsc: ENST00000442307.1:c.-21-21T>C
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000325748
  ensembl transcript: ENST00000316586
  gene symbol: STK25
  hgvsc: ENST00000316586.4:c.262-21T>C
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000401114
  ensembl transcript: ENST00000435225
  gene symbol: STK25
  hgvsc: ENST00000435225.1:c.-21-21T>C
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000479442
  gene symbol: STK25
  hgvsc: ENST00000479442.1:n.55T>C
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000412617
  ensembl transcript: ENST00000436402
  gene symbol: STK25
  hgvsc: ENST00000436402.1:c.262-21T>C
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000399212
  ensembl transcript: ENST00000450497
  gene symbol: STK25
  hgvsc: ENST00000450497.1:c.-42T>C
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000461760
  gene symbol: STK25
  hgvsc: ENST00000461760.1:n.77-536T>C
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000492127
  gene symbol: STK25
  hgvsc: ENST00000492127.1:n.222-21T>C
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000446008
  ensembl transcript: ENST00000535007
  gene symbol: STK25
  hgvsc: ENST00000535007.1:c.-21-21T>C
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000395104
  ensembl transcript: ENST00000413760
  gene symbol: STK25
  hgvsc: ENST00000413760.1:c.-21-21T>C
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000384444
  ensembl transcript: ENST00000405883
  gene symbol: STK25
  hgvsc: ENST00000405883.3:c.31-21T>C
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000404960
  ensembl transcript: ENST00000429279
  gene symbol: STK25
  hgvsc: ENST00000429279.1:c.-21-21T>C
  variant of: http://identifiers.org/hgnc/11404
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: East Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: A
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: QD
site quality: ReadPosRankSum

2-242440247-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 242440247
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 242440247
    reference: chr 2
allele count: 2
allele frequency: 1.660054117764239e-5
allele num: 120478
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000452891
  gene symbol: STK25
  hgvsc: ENST00000452891.1:n.506G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000417020
  ensembl transcript: ENST00000424537
  gene symbol: STK25
  hgvsc: ENST00000424537.1:c.31-551G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000403866
  ensembl transcript: ENST00000440109
  gene symbol: STK25
  hgvsc: ENST00000440109.1:c.-21-36G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000444886
  ensembl transcript: ENST00000543554
  gene symbol: STK25
  hgvsc: ENST00000543554.1:c.-21-36G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000384162
  ensembl transcript: ENST00000403346
  gene symbol: STK25
  hgvsc: ENST00000403346.3:c.262-36G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000401114
  ensembl transcript: ENST00000435225
  gene symbol: STK25
  hgvsc: ENST00000435225.1:c.-21-36G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000385541
  ensembl transcript: ENST00000405585
  gene symbol: STK25
  hgvsc: ENST00000405585.1:c.31-36G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000399212
  ensembl transcript: ENST00000450497
  gene symbol: STK25
  hgvsc: ENST00000450497.1:c.-57G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000483603
  gene symbol: STK25
  hgvsc: ENST00000483603.1:n.556-36G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000479442
  gene symbol: STK25
  hgvsc: ENST00000479442.1:n.40G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000404960
  ensembl transcript: ENST00000429279
  gene symbol: STK25
  hgvsc: ENST00000429279.1:c.-21-36G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000325748
  ensembl transcript: ENST00000316586
  gene symbol: STK25
  hgvsc: ENST00000316586.4:c.262-36G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000406208
  ensembl transcript: ENST00000439101
  gene symbol: STK25
  hgvsc: ENST00000439101.1:c.-57G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000395104
  ensembl transcript: ENST00000413760
  gene symbol: STK25
  hgvsc: ENST00000413760.1:c.-21-36G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000384444
  ensembl transcript: ENST00000405883
  gene symbol: STK25
  hgvsc: ENST00000405883.3:c.31-36G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000461760
  gene symbol: STK25
  hgvsc: ENST00000461760.1:n.77-551G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000385687
  ensembl transcript: ENST00000401869
  gene symbol: STK25
  hgvsc: ENST00000401869.1:c.262-36G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000403607
  ensembl transcript: ENST00000442307
  gene symbol: STK25
  hgvsc: ENST00000442307.1:c.-21-36G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000496159
  gene symbol: STK25
  hgvsc: ENST00000496159.1:n.172-36G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000446008
  ensembl transcript: ENST00000535007
  gene symbol: STK25
  hgvsc: ENST00000535007.1:c.-21-36G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000412617
  ensembl transcript: ENST00000436402
  gene symbol: STK25
  hgvsc: ENST00000436402.1:c.262-36G>A
  variant of: http://identifiers.org/hgnc/11404
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: Latino
population: African
population: South Asian
population: East Asian
reference allele: C
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum

2-242440255-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 242440255
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 242440255
    reference: chr 2
allele count: 5
allele frequency: 4.153927954273561e-5
allele num: 120368
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000385687
  ensembl transcript: ENST00000401869
  gene symbol: STK25
  hgvsc: ENST00000401869.1:c.262-44T>C
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000444886
  ensembl transcript: ENST00000543554
  gene symbol: STK25
  hgvsc: ENST00000543554.1:c.-21-44T>C
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000406208
  ensembl transcript: ENST00000439101
  gene symbol: STK25
  hgvsc: ENST00000439101.1:c.-65T>C
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000492127
  gene symbol: STK25
  hgvsc: ENST00000492127.1:n.222-44T>C
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000399212
  ensembl transcript: ENST00000450497
  gene symbol: STK25
  hgvsc: ENST00000450497.1:c.-65T>C
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000483603
  gene symbol: STK25
  hgvsc: ENST00000483603.1:n.556-44T>C
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000401114
  ensembl transcript: ENST00000435225
  gene symbol: STK25
  hgvsc: ENST00000435225.1:c.-21-44T>C
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000452891
  gene symbol: STK25
  hgvsc: ENST00000452891.1:n.498T>C
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000479442
  gene symbol: STK25
  hgvsc: ENST00000479442.1:n.32T>C
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000417020
  ensembl transcript: ENST00000424537
  gene symbol: STK25
  hgvsc: ENST00000424537.1:c.31-559T>C
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000496159
  gene symbol: STK25
  hgvsc: ENST00000496159.1:n.172-44T>C
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000404960
  ensembl transcript: ENST00000429279
  gene symbol: STK25
  hgvsc: ENST00000429279.1:c.-21-44T>C
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000403866
  ensembl transcript: ENST00000440109
  gene symbol: STK25
  hgvsc: ENST00000440109.1:c.-21-44T>C
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000461760
  gene symbol: STK25
  hgvsc: ENST00000461760.1:n.77-559T>C
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000412617
  ensembl transcript: ENST00000436402
  gene symbol: STK25
  hgvsc: ENST00000436402.1:c.262-44T>C
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000384162
  ensembl transcript: ENST00000403346
  gene symbol: STK25
  hgvsc: ENST00000403346.3:c.262-44T>C
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000395104
  ensembl transcript: ENST00000413760
  gene symbol: STK25
  hgvsc: ENST00000413760.1:c.-21-44T>C
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000385541
  ensembl transcript: ENST00000405585
  gene symbol: STK25
  hgvsc: ENST00000405585.1:c.31-44T>C
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000446008
  ensembl transcript: ENST00000535007
  gene symbol: STK25
  hgvsc: ENST00000535007.1:c.-21-44T>C
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000325748
  ensembl transcript: ENST00000316586
  gene symbol: STK25
  hgvsc: ENST00000316586.4:c.262-44T>C
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000403607
  ensembl transcript: ENST00000442307
  gene symbol: STK25
  hgvsc: ENST00000442307.1:c.-21-44T>C
  variant of: http://identifiers.org/hgnc/11404
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: African
population: Other
population: European (Non-Finnish)
population: European (Finnish)
reference allele: A
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum

2-242440259-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 242440259
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 242440259
    reference: chr 2
allele count: 2
allele frequency: 1.665722757104307e-5
allele num: 120068
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000452891
  gene symbol: STK25
  hgvsc: ENST00000452891.1:n.494G>C
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000479442
  gene symbol: STK25
  hgvsc: ENST00000479442.1:n.28G>C
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000384444
  ensembl transcript: ENST00000405883
  gene symbol: STK25
  hgvsc: ENST00000405883.3:c.31-48G>C
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000385541
  ensembl transcript: ENST00000405585
  gene symbol: STK25
  hgvsc: ENST00000405585.1:c.31-48G>C
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000406208
  ensembl transcript: ENST00000439101
  gene symbol: STK25
  hgvsc: ENST00000439101.1:c.-69G>C
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000403866
  ensembl transcript: ENST00000440109
  gene symbol: STK25
  hgvsc: ENST00000440109.1:c.-21-48G>C
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000496159
  gene symbol: STK25
  hgvsc: ENST00000496159.1:n.172-48G>C
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000399212
  ensembl transcript: ENST00000450497
  gene symbol: STK25
  hgvsc: ENST00000450497.1:c.-69G>C
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000385687
  ensembl transcript: ENST00000401869
  gene symbol: STK25
  hgvsc: ENST00000401869.1:c.262-48G>C
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000395104
  ensembl transcript: ENST00000413760
  gene symbol: STK25
  hgvsc: ENST00000413760.1:c.-21-48G>C
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000444886
  ensembl transcript: ENST00000543554
  gene symbol: STK25
  hgvsc: ENST00000543554.1:c.-21-48G>C
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000446008
  ensembl transcript: ENST00000535007
  gene symbol: STK25
  hgvsc: ENST00000535007.1:c.-21-48G>C
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000492127
  gene symbol: STK25
  hgvsc: ENST00000492127.1:n.222-48G>C
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000384162
  ensembl transcript: ENST00000403346
  gene symbol: STK25
  hgvsc: ENST00000403346.3:c.262-48G>C
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000483603
  gene symbol: STK25
  hgvsc: ENST00000483603.1:n.556-48G>C
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000461760
  gene symbol: STK25
  hgvsc: ENST00000461760.1:n.77-563G>C
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000412617
  ensembl transcript: ENST00000436402
  gene symbol: STK25
  hgvsc: ENST00000436402.1:c.262-48G>C
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000417020
  ensembl transcript: ENST00000424537
  gene symbol: STK25
  hgvsc: ENST00000424537.1:c.31-563G>C
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000325748
  ensembl transcript: ENST00000316586
  gene symbol: STK25
  hgvsc: ENST00000316586.4:c.262-48G>C
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000401114
  ensembl transcript: ENST00000435225
  gene symbol: STK25
  hgvsc: ENST00000435225.1:c.-21-48G>C
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000403607
  ensembl transcript: ENST00000442307
  gene symbol: STK25
  hgvsc: ENST00000442307.1:c.-21-48G>C
  variant of: http://identifiers.org/hgnc/11404
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: Other
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
reference allele: C
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD

http://identifiers.org/exac.variant/2-242440260-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 242440260
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 242440260
    reference: chr 2
allele count: 1
allele frequency: 8.325285557294615e-6
allele num: 120116
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000417020
  ensembl transcript: ENST00000424537
  gene symbol: STK25
  hgvsc: ENST00000424537.1:c.31-564T>G
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000401114
  ensembl transcript: ENST00000435225
  gene symbol: STK25
  hgvsc: ENST00000435225.1:c.-21-49T>G
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000404960
  ensembl transcript: ENST00000429279
  gene symbol: STK25
  hgvsc: ENST00000429279.1:c.-21-49T>G
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000385541
  ensembl transcript: ENST00000405585
  gene symbol: STK25
  hgvsc: ENST00000405585.1:c.31-49T>G
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000406208
  ensembl transcript: ENST00000439101
  gene symbol: STK25
  hgvsc: ENST00000439101.1:c.-70T>G
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000452891
  gene symbol: STK25
  hgvsc: ENST00000452891.1:n.493T>G
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000479442
  gene symbol: STK25
  hgvsc: ENST00000479442.1:n.27T>G
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000325748
  ensembl transcript: ENST00000316586
  gene symbol: STK25
  hgvsc: ENST00000316586.4:c.262-49T>G
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000446008
  ensembl transcript: ENST00000535007
  gene symbol: STK25
  hgvsc: ENST00000535007.1:c.-21-49T>G
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000395104
  ensembl transcript: ENST00000413760
  gene symbol: STK25
  hgvsc: ENST00000413760.1:c.-21-49T>G
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000444886
  ensembl transcript: ENST00000543554
  gene symbol: STK25
  hgvsc: ENST00000543554.1:c.-21-49T>G
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000399212
  ensembl transcript: ENST00000450497
  gene symbol: STK25
  hgvsc: ENST00000450497.1:c.-70T>G
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000384444
  ensembl transcript: ENST00000405883
  gene symbol: STK25
  hgvsc: ENST00000405883.3:c.31-49T>G
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000384162
  ensembl transcript: ENST00000403346
  gene symbol: STK25
  hgvsc: ENST00000403346.3:c.262-49T>G
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000483603
  gene symbol: STK25
  hgvsc: ENST00000483603.1:n.556-49T>G
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000492127
  gene symbol: STK25
  hgvsc: ENST00000492127.1:n.222-49T>G
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000412617
  ensembl transcript: ENST00000436402
  gene symbol: STK25
  hgvsc: ENST00000436402.1:c.262-49T>G
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000461760
  gene symbol: STK25
  hgvsc: ENST00000461760.1:n.77-564T>G
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000496159
  gene symbol: STK25
  hgvsc: ENST00000496159.1:n.172-49T>G
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000403866
  ensembl transcript: ENST00000440109
  gene symbol: STK25
  hgvsc: ENST00000440109.1:c.-21-49T>G
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000403607
  ensembl transcript: ENST00000442307
  gene symbol: STK25
  hgvsc: ENST00000442307.1:c.-21-49T>G
  variant of: http://identifiers.org/hgnc/11404
canonical: false
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: n.493T>G
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: A
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff

2-242440261-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 242440261
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 242440261
    reference: chr 2
allele count: 5
allele frequency: 4.168542510796525e-5
allele num: 119946
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000325748
  ensembl transcript: ENST00000316586
  gene symbol: STK25
  hgvsc: ENST00000316586.4:c.262-50A>C
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000384162
  ensembl transcript: ENST00000403346
  gene symbol: STK25
  hgvsc: ENST00000403346.3:c.262-50A>C
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000479442
  gene symbol: STK25
  hgvsc: ENST00000479442.1:n.26A>C
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000385687
  ensembl transcript: ENST00000401869
  gene symbol: STK25
  hgvsc: ENST00000401869.1:c.262-50A>C
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000406208
  ensembl transcript: ENST00000439101
  gene symbol: STK25
  hgvsc: ENST00000439101.1:c.-71A>C
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000446008
  ensembl transcript: ENST00000535007
  gene symbol: STK25
  hgvsc: ENST00000535007.1:c.-21-50A>C
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000417020
  ensembl transcript: ENST00000424537
  gene symbol: STK25
  hgvsc: ENST00000424537.1:c.31-565A>C
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000395104
  ensembl transcript: ENST00000413760
  gene symbol: STK25
  hgvsc: ENST00000413760.1:c.-21-50A>C
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000496159
  gene symbol: STK25
  hgvsc: ENST00000496159.1:n.172-50A>C
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000483603
  gene symbol: STK25
  hgvsc: ENST00000483603.1:n.556-50A>C
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000492127
  gene symbol: STK25
  hgvsc: ENST00000492127.1:n.222-50A>C
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000399212
  ensembl transcript: ENST00000450497
  gene symbol: STK25
  hgvsc: ENST00000450497.1:c.-71A>C
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000452891
  gene symbol: STK25
  hgvsc: ENST00000452891.1:n.492A>C
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000385541
  ensembl transcript: ENST00000405585
  gene symbol: STK25
  hgvsc: ENST00000405585.1:c.31-50A>C
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000403607
  ensembl transcript: ENST00000442307
  gene symbol: STK25
  hgvsc: ENST00000442307.1:c.-21-50A>C
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000403866
  ensembl transcript: ENST00000440109
  gene symbol: STK25
  hgvsc: ENST00000440109.1:c.-21-50A>C
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000404960
  ensembl transcript: ENST00000429279
  gene symbol: STK25
  hgvsc: ENST00000429279.1:c.-21-50A>C
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000444886
  ensembl transcript: ENST00000543554
  gene symbol: STK25
  hgvsc: ENST00000543554.1:c.-21-50A>C
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000461760
  gene symbol: STK25
  hgvsc: ENST00000461760.1:n.77-565A>C
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000384444
  ensembl transcript: ENST00000405883
  gene symbol: STK25
  hgvsc: ENST00000405883.3:c.31-50A>C
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000412617
  ensembl transcript: ENST00000436402
  gene symbol: STK25
  hgvsc: ENST00000436402.1:c.262-50A>C
  variant of: http://identifiers.org/hgnc/11404
canonical: false
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: n.492A>C
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Other
population: Latino
reference allele: T
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP

2-242440263-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 242440263
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 242440263
    reference: chr 2
allele count: 1
allele frequency: 8.348499774590506e-6
allele num: 119782
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000384162
  ensembl transcript: ENST00000403346
  gene symbol: STK25
  hgvsc: ENST00000403346.3:c.262-52G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000325748
  ensembl transcript: ENST00000316586
  gene symbol: STK25
  hgvsc: ENST00000316586.4:c.262-52G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000385687
  ensembl transcript: ENST00000401869
  gene symbol: STK25
  hgvsc: ENST00000401869.1:c.262-52G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000479442
  gene symbol: STK25
  hgvsc: ENST00000479442.1:n.24G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000406208
  ensembl transcript: ENST00000439101
  gene symbol: STK25
  hgvsc: ENST00000439101.1:c.-72-1G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000492127
  gene symbol: STK25
  hgvsc: ENST00000492127.1:n.222-52G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000496159
  gene symbol: STK25
  hgvsc: ENST00000496159.1:n.172-52G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000446008
  ensembl transcript: ENST00000535007
  gene symbol: STK25
  hgvsc: ENST00000535007.1:c.-21-52G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000461760
  gene symbol: STK25
  hgvsc: ENST00000461760.1:n.77-567G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000403607
  ensembl transcript: ENST00000442307
  gene symbol: STK25
  hgvsc: ENST00000442307.1:c.-21-52G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000403866
  ensembl transcript: ENST00000440109
  gene symbol: STK25
  hgvsc: ENST00000440109.1:c.-21-52G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000401114
  ensembl transcript: ENST00000435225
  gene symbol: STK25
  hgvsc: ENST00000435225.1:c.-21-52G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000385541
  ensembl transcript: ENST00000405585
  gene symbol: STK25
  hgvsc: ENST00000405585.1:c.31-52G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000483603
  gene symbol: STK25
  hgvsc: ENST00000483603.1:n.556-52G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000417020
  ensembl transcript: ENST00000424537
  gene symbol: STK25
  hgvsc: ENST00000424537.1:c.31-567G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000452891
  gene symbol: STK25
  hgvsc: ENST00000452891.1:n.491-1G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000399212
  ensembl transcript: ENST00000450497
  gene symbol: STK25
  hgvsc: ENST00000450497.1:c.-73G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000444886
  ensembl transcript: ENST00000543554
  gene symbol: STK25
  hgvsc: ENST00000543554.1:c.-21-52G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000412617
  ensembl transcript: ENST00000436402
  gene symbol: STK25
  hgvsc: ENST00000436402.1:c.262-52G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000395104
  ensembl transcript: ENST00000413760
  gene symbol: STK25
  hgvsc: ENST00000413760.1:c.-21-52G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000404960
  ensembl transcript: ENST00000429279
  gene symbol: STK25
  hgvsc: ENST00000429279.1:c.-21-52G>A
  variant of: http://identifiers.org/hgnc/11404
canonical: false
consequence: splice acceptor
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: n.491-1G>A
num of homozygotes: 0
population: Latino
population: Other
population: African
population: South Asian
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD

2-242440768-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 242440768
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 242440768
    reference: chr 2
allele count: 0
allele frequency: 0.0e0
allele num: 16408
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000417020
  ensembl transcript: ENST00000424537
  gene symbol: STK25
  hgvsc: ENST00000424537.1:c.31-1072G>C
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000399212
  ensembl transcript: ENST00000450497
  gene symbol: STK25
  hgvsc: ENST00000450497.1:c.-303+125G>C
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000452891
  gene symbol: STK25
  hgvsc: ENST00000452891.1:n.490+125G>C
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000395104
  ensembl transcript: ENST00000413760
  gene symbol: STK25
  hgvsc: ENST00000413760.1:c.-22+125G>C
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000403607
  ensembl transcript: ENST00000442307
  gene symbol: STK25
  hgvsc: ENST00000442307.1:c.-22+125G>C
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000325748
  ensembl transcript: ENST00000316586
  gene symbol: STK25
  hgvsc: ENST00000316586.4:c.261+125G>C
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000446008
  ensembl transcript: ENST00000535007
  gene symbol: STK25
  hgvsc: ENST00000535007.1:c.-22+125G>C
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000444886
  ensembl transcript: ENST00000543554
  gene symbol: STK25
  hgvsc: ENST00000543554.1:c.-22+125G>C
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000492127
  gene symbol: STK25
  hgvsc: ENST00000492127.1:n.221+125G>C
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000436917
  gene symbol: STK25
  hgvsc: ENST00000436917.1:n.439+125G>C
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000412617
  ensembl transcript: ENST00000436402
  gene symbol: STK25
  hgvsc: ENST00000436402.1:c.261+125G>C
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000403866
  ensembl transcript: ENST00000440109
  gene symbol: STK25
  hgvsc: ENST00000440109.1:c.-22+125G>C
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000483603
  gene symbol: STK25
  hgvsc: ENST00000483603.1:n.555+125G>C
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000384444
  ensembl transcript: ENST00000405883
  gene symbol: STK25
  hgvsc: ENST00000405883.3:c.31-557G>C
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000461760
  gene symbol: STK25
  hgvsc: ENST00000461760.1:n.77-1072G>C
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000385541
  ensembl transcript: ENST00000405585
  gene symbol: STK25
  hgvsc: ENST00000405585.1:c.31-557G>C
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000496159
  gene symbol: STK25
  hgvsc: ENST00000496159.1:n.171+175G>C
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000406208
  ensembl transcript: ENST00000439101
  gene symbol: STK25
  hgvsc: ENST00000439101.1:c.-73+125G>C
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000401114
  ensembl transcript: ENST00000435225
  gene symbol: STK25
  hgvsc: ENST00000435225.1:c.-22+125G>C
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000385687
  ensembl transcript: ENST00000401869
  gene symbol: STK25
  hgvsc: ENST00000401869.1:c.261+125G>C
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000404960
  ensembl transcript: ENST00000429279
  gene symbol: STK25
  hgvsc: ENST00000429279.1:c.-22+125G>C
  variant of: http://identifiers.org/hgnc/11404
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: African
population: Other
population: European (Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: FS
site quality: ClippingRankSum

2-242440770-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 242440770
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 242440770
    reference: chr 2
allele count: 5
allele frequency: 3.04989630352568e-4
allele num: 16394
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000403607
  ensembl transcript: ENST00000442307
  gene symbol: STK25
  hgvsc: ENST00000442307.1:c.-22+123G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000399212
  ensembl transcript: ENST00000450497
  gene symbol: STK25
  hgvsc: ENST00000450497.1:c.-303+123G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000492127
  gene symbol: STK25
  hgvsc: ENST00000492127.1:n.221+123G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000436917
  gene symbol: STK25
  hgvsc: ENST00000436917.1:n.439+123G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000412617
  ensembl transcript: ENST00000436402
  gene symbol: STK25
  hgvsc: ENST00000436402.1:c.261+123G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000417020
  ensembl transcript: ENST00000424537
  gene symbol: STK25
  hgvsc: ENST00000424537.1:c.31-1074G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000385687
  ensembl transcript: ENST00000401869
  gene symbol: STK25
  hgvsc: ENST00000401869.1:c.261+123G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000384444
  ensembl transcript: ENST00000405883
  gene symbol: STK25
  hgvsc: ENST00000405883.3:c.31-559G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000401114
  ensembl transcript: ENST00000435225
  gene symbol: STK25
  hgvsc: ENST00000435225.1:c.-22+123G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000385541
  ensembl transcript: ENST00000405585
  gene symbol: STK25
  hgvsc: ENST00000405585.1:c.31-559G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000483603
  gene symbol: STK25
  hgvsc: ENST00000483603.1:n.555+123G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000404960
  ensembl transcript: ENST00000429279
  gene symbol: STK25
  hgvsc: ENST00000429279.1:c.-22+123G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000395104
  ensembl transcript: ENST00000413760
  gene symbol: STK25
  hgvsc: ENST00000413760.1:c.-22+123G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000403866
  ensembl transcript: ENST00000440109
  gene symbol: STK25
  hgvsc: ENST00000440109.1:c.-22+123G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000384162
  ensembl transcript: ENST00000403346
  gene symbol: STK25
  hgvsc: ENST00000403346.3:c.261+123G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000461760
  gene symbol: STK25
  hgvsc: ENST00000461760.1:n.77-1074G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000446008
  ensembl transcript: ENST00000535007
  gene symbol: STK25
  hgvsc: ENST00000535007.1:c.-22+123G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000496159
  gene symbol: STK25
  hgvsc: ENST00000496159.1:n.171+173G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000452891
  gene symbol: STK25
  hgvsc: ENST00000452891.1:n.490+123G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000325748
  ensembl transcript: ENST00000316586
  gene symbol: STK25
  hgvsc: ENST00000316586.4:c.261+123G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000406208
  ensembl transcript: ENST00000439101
  gene symbol: STK25
  hgvsc: ENST00000439101.1:c.-73+123G>A
  variant of: http://identifiers.org/hgnc/11404
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Other
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: DP

2-242440779-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 242440779
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 242440779
    reference: chr 2
allele count: 1
allele frequency: 5.676013168350551e-5
allele num: 17618
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000401114
  ensembl transcript: ENST00000435225
  gene symbol: STK25
  hgvsc: ENST00000435225.1:c.-22+114A>C
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000404960
  ensembl transcript: ENST00000429279
  gene symbol: STK25
  hgvsc: ENST00000429279.1:c.-22+114A>C
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000403866
  ensembl transcript: ENST00000440109
  gene symbol: STK25
  hgvsc: ENST00000440109.1:c.-22+114A>C
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000483603
  gene symbol: STK25
  hgvsc: ENST00000483603.1:n.555+114A>C
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000492127
  gene symbol: STK25
  hgvsc: ENST00000492127.1:n.221+114A>C
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000384162
  ensembl transcript: ENST00000403346
  gene symbol: STK25
  hgvsc: ENST00000403346.3:c.261+114A>C
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000417020
  ensembl transcript: ENST00000424537
  gene symbol: STK25
  hgvsc: ENST00000424537.1:c.31-1083A>C
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000325748
  ensembl transcript: ENST00000316586
  gene symbol: STK25
  hgvsc: ENST00000316586.4:c.261+114A>C
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000496159
  gene symbol: STK25
  hgvsc: ENST00000496159.1:n.171+164A>C
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000403607
  ensembl transcript: ENST00000442307
  gene symbol: STK25
  hgvsc: ENST00000442307.1:c.-22+114A>C
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000436917
  gene symbol: STK25
  hgvsc: ENST00000436917.1:n.439+114A>C
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000461760
  gene symbol: STK25
  hgvsc: ENST00000461760.1:n.77-1083A>C
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000495372
  gene symbol: STK25
  hgvsc: ENST00000495372.1:n.554A>C
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000444886
  ensembl transcript: ENST00000543554
  gene symbol: STK25
  hgvsc: ENST00000543554.1:c.-22+114A>C
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000385541
  ensembl transcript: ENST00000405585
  gene symbol: STK25
  hgvsc: ENST00000405585.1:c.31-568A>C
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000406208
  ensembl transcript: ENST00000439101
  gene symbol: STK25
  hgvsc: ENST00000439101.1:c.-73+114A>C
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000395104
  ensembl transcript: ENST00000413760
  gene symbol: STK25
  hgvsc: ENST00000413760.1:c.-22+114A>C
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000446008
  ensembl transcript: ENST00000535007
  gene symbol: STK25
  hgvsc: ENST00000535007.1:c.-22+114A>C
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000399212
  ensembl transcript: ENST00000450497
  gene symbol: STK25
  hgvsc: ENST00000450497.1:c.-303+114A>C
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000412617
  ensembl transcript: ENST00000436402
  gene symbol: STK25
  hgvsc: ENST00000436402.1:c.261+114A>C
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000452891
  gene symbol: STK25
  hgvsc: ENST00000452891.1:n.490+114A>C
  variant of: http://identifiers.org/hgnc/11404
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
population: African
population: Other
reference allele: T
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum

2-242440782-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 242440782
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 242440782
    reference: chr 2
allele count: 3
allele frequency: 1.657275439177991e-4
allele num: 18102
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000401114
  ensembl transcript: ENST00000435225
  gene symbol: STK25
  hgvsc: ENST00000435225.1:c.-22+111T>C
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000384444
  ensembl transcript: ENST00000405883
  gene symbol: STK25
  hgvsc: ENST00000405883.3:c.31-571T>C
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000385541
  ensembl transcript: ENST00000405585
  gene symbol: STK25
  hgvsc: ENST00000405585.1:c.31-571T>C
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000399212
  ensembl transcript: ENST00000450497
  gene symbol: STK25
  hgvsc: ENST00000450497.1:c.-303+111T>C
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000406208
  ensembl transcript: ENST00000439101
  gene symbol: STK25
  hgvsc: ENST00000439101.1:c.-73+111T>C
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000385687
  ensembl transcript: ENST00000401869
  gene symbol: STK25
  hgvsc: ENST00000401869.1:c.261+111T>C
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000325748
  ensembl transcript: ENST00000316586
  gene symbol: STK25
  hgvsc: ENST00000316586.4:c.261+111T>C
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000417020
  ensembl transcript: ENST00000424537
  gene symbol: STK25
  hgvsc: ENST00000424537.1:c.31-1086T>C
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000384162
  ensembl transcript: ENST00000403346
  gene symbol: STK25
  hgvsc: ENST00000403346.3:c.261+111T>C
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000403866
  ensembl transcript: ENST00000440109
  gene symbol: STK25
  hgvsc: ENST00000440109.1:c.-22+111T>C
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000495372
  gene symbol: STK25
  hgvsc: ENST00000495372.1:n.551T>C
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000492127
  gene symbol: STK25
  hgvsc: ENST00000492127.1:n.221+111T>C
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000412617
  ensembl transcript: ENST00000436402
  gene symbol: STK25
  hgvsc: ENST00000436402.1:c.261+111T>C
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000403607
  ensembl transcript: ENST00000442307
  gene symbol: STK25
  hgvsc: ENST00000442307.1:c.-22+111T>C
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000452891
  gene symbol: STK25
  hgvsc: ENST00000452891.1:n.490+111T>C
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000496159
  gene symbol: STK25
  hgvsc: ENST00000496159.1:n.171+161T>C
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000446008
  ensembl transcript: ENST00000535007
  gene symbol: STK25
  hgvsc: ENST00000535007.1:c.-22+111T>C
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000395104
  ensembl transcript: ENST00000413760
  gene symbol: STK25
  hgvsc: ENST00000413760.1:c.-22+111T>C
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000436917
  gene symbol: STK25
  hgvsc: ENST00000436917.1:n.439+111T>C
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000461760
  gene symbol: STK25
  hgvsc: ENST00000461760.1:n.77-1086T>C
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000444886
  ensembl transcript: ENST00000543554
  gene symbol: STK25
  hgvsc: ENST00000543554.1:c.-22+111T>C
  variant of: http://identifiers.org/hgnc/11404
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: South Asian
population: European (Non-Finnish)
population: Other
population: East Asian
reference allele: A
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum

2-242440790-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 242440790
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 242440790
    reference: chr 2
allele count: 8
allele frequency: 4.100881689563256e-4
allele num: 19508
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000412617
  ensembl transcript: ENST00000436402
  gene symbol: STK25
  hgvsc: ENST00000436402.1:c.261+103C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000483603
  gene symbol: STK25
  hgvsc: ENST00000483603.1:n.555+103C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000492127
  gene symbol: STK25
  hgvsc: ENST00000492127.1:n.221+103C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000452891
  gene symbol: STK25
  hgvsc: ENST00000452891.1:n.490+103C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000417020
  ensembl transcript: ENST00000424537
  gene symbol: STK25
  hgvsc: ENST00000424537.1:c.31-1094C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000325748
  ensembl transcript: ENST00000316586
  gene symbol: STK25
  hgvsc: ENST00000316586.4:c.261+103C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000444886
  ensembl transcript: ENST00000543554
  gene symbol: STK25
  hgvsc: ENST00000543554.1:c.-22+103C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000384444
  ensembl transcript: ENST00000405883
  gene symbol: STK25
  hgvsc: ENST00000405883.3:c.31-579C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000446008
  ensembl transcript: ENST00000535007
  gene symbol: STK25
  hgvsc: ENST00000535007.1:c.-22+103C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000401114
  ensembl transcript: ENST00000435225
  gene symbol: STK25
  hgvsc: ENST00000435225.1:c.-22+103C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000403607
  ensembl transcript: ENST00000442307
  gene symbol: STK25
  hgvsc: ENST00000442307.1:c.-22+103C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000385541
  ensembl transcript: ENST00000405585
  gene symbol: STK25
  hgvsc: ENST00000405585.1:c.31-579C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000495372
  gene symbol: STK25
  hgvsc: ENST00000495372.1:n.543C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000436917
  gene symbol: STK25
  hgvsc: ENST00000436917.1:n.439+103C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000399212
  ensembl transcript: ENST00000450497
  gene symbol: STK25
  hgvsc: ENST00000450497.1:c.-303+103C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000403866
  ensembl transcript: ENST00000440109
  gene symbol: STK25
  hgvsc: ENST00000440109.1:c.-22+103C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000395104
  ensembl transcript: ENST00000413760
  gene symbol: STK25
  hgvsc: ENST00000413760.1:c.-22+103C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000461760
  gene symbol: STK25
  hgvsc: ENST00000461760.1:n.77-1094C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000404960
  ensembl transcript: ENST00000429279
  gene symbol: STK25
  hgvsc: ENST00000429279.1:c.-22+103C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000385687
  ensembl transcript: ENST00000401869
  gene symbol: STK25
  hgvsc: ENST00000401869.1:c.261+103C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000384162
  ensembl transcript: ENST00000403346
  gene symbol: STK25
  hgvsc: ENST00000403346.3:c.261+103C>T
  variant of: http://identifiers.org/hgnc/11404
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: South Asian
population: Latino
population: European (Finnish)
population: East Asian
population: Other
reference allele: G
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum

2-242440798-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 242440798
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 242440798
    reference: chr 2
allele count: 0
allele frequency: 0.0e0
allele num: 21748
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000385687
  ensembl transcript: ENST00000401869
  gene symbol: STK25
  hgvsc: ENST00000401869.1:c.261+95G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000401114
  ensembl transcript: ENST00000435225
  gene symbol: STK25
  hgvsc: ENST00000435225.1:c.-22+95G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000403607
  ensembl transcript: ENST00000442307
  gene symbol: STK25
  hgvsc: ENST00000442307.1:c.-22+95G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000385541
  ensembl transcript: ENST00000405585
  gene symbol: STK25
  hgvsc: ENST00000405585.1:c.31-587G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000452891
  gene symbol: STK25
  hgvsc: ENST00000452891.1:n.490+95G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000384444
  ensembl transcript: ENST00000405883
  gene symbol: STK25
  hgvsc: ENST00000405883.3:c.31-587G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000461760
  gene symbol: STK25
  hgvsc: ENST00000461760.1:n.77-1102G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000492127
  gene symbol: STK25
  hgvsc: ENST00000492127.1:n.221+95G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000404960
  ensembl transcript: ENST00000429279
  gene symbol: STK25
  hgvsc: ENST00000429279.1:c.-22+95G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000412617
  ensembl transcript: ENST00000436402
  gene symbol: STK25
  hgvsc: ENST00000436402.1:c.261+95G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000406208
  ensembl transcript: ENST00000439101
  gene symbol: STK25
  hgvsc: ENST00000439101.1:c.-73+95G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000384162
  ensembl transcript: ENST00000403346
  gene symbol: STK25
  hgvsc: ENST00000403346.3:c.261+95G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000417020
  ensembl transcript: ENST00000424537
  gene symbol: STK25
  hgvsc: ENST00000424537.1:c.31-1102G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000436917
  gene symbol: STK25
  hgvsc: ENST00000436917.1:n.439+95G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000325748
  ensembl transcript: ENST00000316586
  gene symbol: STK25
  hgvsc: ENST00000316586.4:c.261+95G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000446008
  ensembl transcript: ENST00000535007
  gene symbol: STK25
  hgvsc: ENST00000535007.1:c.-22+95G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000399212
  ensembl transcript: ENST00000450497
  gene symbol: STK25
  hgvsc: ENST00000450497.1:c.-303+95G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000495372
  gene symbol: STK25
  hgvsc: ENST00000495372.1:n.535G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000403866
  ensembl transcript: ENST00000440109
  gene symbol: STK25
  hgvsc: ENST00000440109.1:c.-22+95G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000395104
  ensembl transcript: ENST00000413760
  gene symbol: STK25
  hgvsc: ENST00000413760.1:c.-22+95G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000483603
  gene symbol: STK25
  hgvsc: ENST00000483603.1:n.555+95G>A
  variant of: http://identifiers.org/hgnc/11404
canonical: false
consequence: non coding transcript exon
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: South Asian
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum

2-242440799-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 242440799
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 242440799
    reference: chr 2
allele count: 1
allele frequency: 4.465880671668453e-5
allele num: 22392
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000385541
  ensembl transcript: ENST00000405585
  gene symbol: STK25
  hgvsc: ENST00000405585.1:c.31-588C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000446008
  ensembl transcript: ENST00000535007
  gene symbol: STK25
  hgvsc: ENST00000535007.1:c.-22+94C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000385687
  ensembl transcript: ENST00000401869
  gene symbol: STK25
  hgvsc: ENST00000401869.1:c.261+94C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000403607
  ensembl transcript: ENST00000442307
  gene symbol: STK25
  hgvsc: ENST00000442307.1:c.-22+94C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000495372
  gene symbol: STK25
  hgvsc: ENST00000495372.1:n.534C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000496159
  gene symbol: STK25
  hgvsc: ENST00000496159.1:n.171+144C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000492127
  gene symbol: STK25
  hgvsc: ENST00000492127.1:n.221+94C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000417020
  ensembl transcript: ENST00000424537
  gene symbol: STK25
  hgvsc: ENST00000424537.1:c.31-1103C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000404960
  ensembl transcript: ENST00000429279
  gene symbol: STK25
  hgvsc: ENST00000429279.1:c.-22+94C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000436917
  gene symbol: STK25
  hgvsc: ENST00000436917.1:n.439+94C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000399212
  ensembl transcript: ENST00000450497
  gene symbol: STK25
  hgvsc: ENST00000450497.1:c.-303+94C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000384444
  ensembl transcript: ENST00000405883
  gene symbol: STK25
  hgvsc: ENST00000405883.3:c.31-588C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000412617
  ensembl transcript: ENST00000436402
  gene symbol: STK25
  hgvsc: ENST00000436402.1:c.261+94C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000406208
  ensembl transcript: ENST00000439101
  gene symbol: STK25
  hgvsc: ENST00000439101.1:c.-73+94C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000444886
  ensembl transcript: ENST00000543554
  gene symbol: STK25
  hgvsc: ENST00000543554.1:c.-22+94C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000461760
  gene symbol: STK25
  hgvsc: ENST00000461760.1:n.77-1103C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000395104
  ensembl transcript: ENST00000413760
  gene symbol: STK25
  hgvsc: ENST00000413760.1:c.-22+94C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000452891
  gene symbol: STK25
  hgvsc: ENST00000452891.1:n.490+94C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000403866
  ensembl transcript: ENST00000440109
  gene symbol: STK25
  hgvsc: ENST00000440109.1:c.-22+94C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000483603
  gene symbol: STK25
  hgvsc: ENST00000483603.1:n.555+94C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000325748
  ensembl transcript: ENST00000316586
  gene symbol: STK25
  hgvsc: ENST00000316586.4:c.261+94C>T
  variant of: http://identifiers.org/hgnc/11404
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: Other
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: QD

2-242440799-GC-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 242440799
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 242440798
    reference: chr 2
allele count: 1
allele frequency: 4.465880671668453e-5
allele num: 22392
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000399212
  ensembl transcript: ENST00000450497
  gene symbol: STK25
  hgvsc: ENST00000450497.1:c.-303+93delG
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000417020
  ensembl transcript: ENST00000424537
  gene symbol: STK25
  hgvsc: ENST00000424537.1:c.31-1104delG
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000444886
  ensembl transcript: ENST00000543554
  gene symbol: STK25
  hgvsc: ENST00000543554.1:c.-22+93delG
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000384162
  ensembl transcript: ENST00000403346
  gene symbol: STK25
  hgvsc: ENST00000403346.3:c.261+93delG
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000395104
  ensembl transcript: ENST00000413760
  gene symbol: STK25
  hgvsc: ENST00000413760.1:c.-22+93delG
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000404960
  ensembl transcript: ENST00000429279
  gene symbol: STK25
  hgvsc: ENST00000429279.1:c.-22+93delG
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000436917
  gene symbol: STK25
  hgvsc: ENST00000436917.1:n.439+93delG
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000325748
  ensembl transcript: ENST00000316586
  gene symbol: STK25
  hgvsc: ENST00000316586.4:c.261+93delG
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000495372
  gene symbol: STK25
  hgvsc: ENST00000495372.1:n.533delG
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000492127
  gene symbol: STK25
  hgvsc: ENST00000492127.1:n.221+93delG
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000403607
  ensembl transcript: ENST00000442307
  gene symbol: STK25
  hgvsc: ENST00000442307.1:c.-22+93delG
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000406208
  ensembl transcript: ENST00000439101
  gene symbol: STK25
  hgvsc: ENST00000439101.1:c.-73+93delG
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000385687
  ensembl transcript: ENST00000401869
  gene symbol: STK25
  hgvsc: ENST00000401869.1:c.261+93delG
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000412617
  ensembl transcript: ENST00000436402
  gene symbol: STK25
  hgvsc: ENST00000436402.1:c.261+93delG
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000385541
  ensembl transcript: ENST00000405585
  gene symbol: STK25
  hgvsc: ENST00000405585.1:c.31-589delG
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000483603
  gene symbol: STK25
  hgvsc: ENST00000483603.1:n.555+93delG
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000403866
  ensembl transcript: ENST00000440109
  gene symbol: STK25
  hgvsc: ENST00000440109.1:c.-22+93delG
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000496159
  gene symbol: STK25
  hgvsc: ENST00000496159.1:n.171+143delG
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000384444
  ensembl transcript: ENST00000405883
  gene symbol: STK25
  hgvsc: ENST00000405883.3:c.31-589delG
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000461760
  gene symbol: STK25
  hgvsc: ENST00000461760.1:n.77-1104delG
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000401114
  ensembl transcript: ENST00000435225
  gene symbol: STK25
  hgvsc: ENST00000435225.1:c.-22+93delG
  variant of: http://identifiers.org/hgnc/11404
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: Other
population: East Asian
population: African
population: South Asian
reference allele: GC
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP

2-242440802-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 242440802
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 242440802
    reference: chr 2
allele count: 0
allele frequency: 0.0e0
allele num: 23356
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000384444
  ensembl transcript: ENST00000405883
  gene symbol: STK25
  hgvsc: ENST00000405883.3:c.31-591A>G
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000496159
  gene symbol: STK25
  hgvsc: ENST00000496159.1:n.171+141A>G
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000401114
  ensembl transcript: ENST00000435225
  gene symbol: STK25
  hgvsc: ENST00000435225.1:c.-22+91A>G
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000461760
  gene symbol: STK25
  hgvsc: ENST00000461760.1:n.77-1106A>G
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000412617
  ensembl transcript: ENST00000436402
  gene symbol: STK25
  hgvsc: ENST00000436402.1:c.261+91A>G
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000384162
  ensembl transcript: ENST00000403346
  gene symbol: STK25
  hgvsc: ENST00000403346.3:c.261+91A>G
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000385687
  ensembl transcript: ENST00000401869
  gene symbol: STK25
  hgvsc: ENST00000401869.1:c.261+91A>G
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000404960
  ensembl transcript: ENST00000429279
  gene symbol: STK25
  hgvsc: ENST00000429279.1:c.-22+91A>G
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000492127
  gene symbol: STK25
  hgvsc: ENST00000492127.1:n.221+91A>G
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000325748
  ensembl transcript: ENST00000316586
  gene symbol: STK25
  hgvsc: ENST00000316586.4:c.261+91A>G
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000403866
  ensembl transcript: ENST00000440109
  gene symbol: STK25
  hgvsc: ENST00000440109.1:c.-22+91A>G
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000385541
  ensembl transcript: ENST00000405585
  gene symbol: STK25
  hgvsc: ENST00000405585.1:c.31-591A>G
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000436917
  gene symbol: STK25
  hgvsc: ENST00000436917.1:n.439+91A>G
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000452891
  gene symbol: STK25
  hgvsc: ENST00000452891.1:n.490+91A>G
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000495372
  gene symbol: STK25
  hgvsc: ENST00000495372.1:n.531A>G
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000446008
  ensembl transcript: ENST00000535007
  gene symbol: STK25
  hgvsc: ENST00000535007.1:c.-22+91A>G
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000403607
  ensembl transcript: ENST00000442307
  gene symbol: STK25
  hgvsc: ENST00000442307.1:c.-22+91A>G
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000399212
  ensembl transcript: ENST00000450497
  gene symbol: STK25
  hgvsc: ENST00000450497.1:c.-303+91A>G
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000406208
  ensembl transcript: ENST00000439101
  gene symbol: STK25
  hgvsc: ENST00000439101.1:c.-73+91A>G
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000444886
  ensembl transcript: ENST00000543554
  gene symbol: STK25
  hgvsc: ENST00000543554.1:c.-22+91A>G
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000483603
  gene symbol: STK25
  hgvsc: ENST00000483603.1:n.555+91A>G
  variant of: http://identifiers.org/hgnc/11404
canonical: false
consequence: non coding transcript exon
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: East Asian
population: African
population: Latino
reference allele: T
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum

2-242440814-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 242440814
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 242440814
    reference: chr 2
allele count: 0
allele frequency: 0.0e0
allele num: 27282
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000414191
  ensembl transcript: ENST00000426941
  gene symbol: STK25
  hgvsc: ENST00000426941.1:c.340C>A
  hgvsp: ENSP00000414191.1:p.Pro114Thr
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000404960
  ensembl transcript: ENST00000429279
  gene symbol: STK25
  hgvsc: ENST00000429279.1:c.-22+79C>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000403866
  ensembl transcript: ENST00000440109
  gene symbol: STK25
  hgvsc: ENST00000440109.1:c.-22+79C>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000483603
  gene symbol: STK25
  hgvsc: ENST00000483603.1:n.555+79C>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000384444
  ensembl transcript: ENST00000405883
  gene symbol: STK25
  hgvsc: ENST00000405883.3:c.31-603C>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000436917
  gene symbol: STK25
  hgvsc: ENST00000436917.1:n.439+79C>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000385541
  ensembl transcript: ENST00000405585
  gene symbol: STK25
  hgvsc: ENST00000405585.1:c.31-603C>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000417020
  ensembl transcript: ENST00000424537
  gene symbol: STK25
  hgvsc: ENST00000424537.1:c.31-1118C>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000406208
  ensembl transcript: ENST00000439101
  gene symbol: STK25
  hgvsc: ENST00000439101.1:c.-73+79C>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000385687
  ensembl transcript: ENST00000401869
  gene symbol: STK25
  hgvsc: ENST00000401869.1:c.261+79C>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000492127
  gene symbol: STK25
  hgvsc: ENST00000492127.1:n.221+79C>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000496159
  gene symbol: STK25
  hgvsc: ENST00000496159.1:n.171+129C>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000446008
  ensembl transcript: ENST00000535007
  gene symbol: STK25
  hgvsc: ENST00000535007.1:c.-22+79C>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000401114
  ensembl transcript: ENST00000435225
  gene symbol: STK25
  hgvsc: ENST00000435225.1:c.-22+79C>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000444886
  ensembl transcript: ENST00000543554
  gene symbol: STK25
  hgvsc: ENST00000543554.1:c.-22+79C>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000395104
  ensembl transcript: ENST00000413760
  gene symbol: STK25
  hgvsc: ENST00000413760.1:c.-22+79C>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000461760
  gene symbol: STK25
  hgvsc: ENST00000461760.1:n.77-1118C>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000495372
  gene symbol: STK25
  hgvsc: ENST00000495372.1:n.519C>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000403607
  ensembl transcript: ENST00000442307
  gene symbol: STK25
  hgvsc: ENST00000442307.1:c.-22+79C>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000452891
  gene symbol: STK25
  hgvsc: ENST00000452891.1:n.490+79C>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000384162
  ensembl transcript: ENST00000403346
  gene symbol: STK25
  hgvsc: ENST00000403346.3:c.261+79C>A
  variant of: http://identifiers.org/hgnc/11404
canonical: false
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Pro114Thr
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Other
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
reference allele: G
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum

2-242440818-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 242440818
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 242440818
    reference: chr 2
allele count: 4
allele frequency: 1.377600220416035e-4
allele num: 29036
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000403607
  ensembl transcript: ENST00000442307
  gene symbol: STK25
  hgvsc: ENST00000442307.1:c.-22+75C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000385541
  ensembl transcript: ENST00000405585
  gene symbol: STK25
  hgvsc: ENST00000405585.1:c.31-607C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000414191
  ensembl transcript: ENST00000426941
  gene symbol: STK25
  hgvsc: ENST00000426941.1:c.336C>T
  hgvsp: ENST00000426941.1:c.336C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000406208
  ensembl transcript: ENST00000439101
  gene symbol: STK25
  hgvsc: ENST00000439101.1:c.-73+75C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000461760
  gene symbol: STK25
  hgvsc: ENST00000461760.1:n.77-1122C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000401114
  ensembl transcript: ENST00000435225
  gene symbol: STK25
  hgvsc: ENST00000435225.1:c.-22+75C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000385687
  ensembl transcript: ENST00000401869
  gene symbol: STK25
  hgvsc: ENST00000401869.1:c.261+75C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000403866
  ensembl transcript: ENST00000440109
  gene symbol: STK25
  hgvsc: ENST00000440109.1:c.-22+75C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000492127
  gene symbol: STK25
  hgvsc: ENST00000492127.1:n.221+75C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000404960
  ensembl transcript: ENST00000429279
  gene symbol: STK25
  hgvsc: ENST00000429279.1:c.-22+75C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000495372
  gene symbol: STK25
  hgvsc: ENST00000495372.1:n.515C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000417020
  ensembl transcript: ENST00000424537
  gene symbol: STK25
  hgvsc: ENST00000424537.1:c.31-1122C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000384162
  ensembl transcript: ENST00000403346
  gene symbol: STK25
  hgvsc: ENST00000403346.3:c.261+75C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000444886
  ensembl transcript: ENST00000543554
  gene symbol: STK25
  hgvsc: ENST00000543554.1:c.-22+75C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000399212
  ensembl transcript: ENST00000450497
  gene symbol: STK25
  hgvsc: ENST00000450497.1:c.-303+75C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000446008
  ensembl transcript: ENST00000535007
  gene symbol: STK25
  hgvsc: ENST00000535007.1:c.-22+75C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000483603
  gene symbol: STK25
  hgvsc: ENST00000483603.1:n.555+75C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000384444
  ensembl transcript: ENST00000405883
  gene symbol: STK25
  hgvsc: ENST00000405883.3:c.31-607C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000496159
  gene symbol: STK25
  hgvsc: ENST00000496159.1:n.171+125C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000452891
  gene symbol: STK25
  hgvsc: ENST00000452891.1:n.490+75C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000395104
  ensembl transcript: ENST00000413760
  gene symbol: STK25
  hgvsc: ENST00000413760.1:c.-22+75C>T
  variant of: http://identifiers.org/hgnc/11404
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Asp112Asp
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: South Asian
population: Latino
population: European (Finnish)
population: Other
reference allele: G
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum

2-242440822-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 242440822
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 242440822
    reference: chr 2
allele count: 1
allele frequency: 3.235198964736332e-5
allele num: 30910
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000444886
  ensembl transcript: ENST00000543554
  gene symbol: STK25
  hgvsc: ENST00000543554.1:c.-22+71G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000404960
  ensembl transcript: ENST00000429279
  gene symbol: STK25
  hgvsc: ENST00000429279.1:c.-22+71G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000492127
  gene symbol: STK25
  hgvsc: ENST00000492127.1:n.221+71G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000436917
  gene symbol: STK25
  hgvsc: ENST00000436917.1:n.439+71G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000446008
  ensembl transcript: ENST00000535007
  gene symbol: STK25
  hgvsc: ENST00000535007.1:c.-22+71G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000417020
  ensembl transcript: ENST00000424537
  gene symbol: STK25
  hgvsc: ENST00000424537.1:c.31-1126G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000399212
  ensembl transcript: ENST00000450497
  gene symbol: STK25
  hgvsc: ENST00000450497.1:c.-303+71G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000385687
  ensembl transcript: ENST00000401869
  gene symbol: STK25
  hgvsc: ENST00000401869.1:c.261+71G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000414191
  ensembl transcript: ENST00000426941
  gene symbol: STK25
  hgvsc: ENST00000426941.1:c.332G>A
  hgvsp: ENSP00000414191.1:p.Ser111Asn
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000325748
  ensembl transcript: ENST00000316586
  gene symbol: STK25
  hgvsc: ENST00000316586.4:c.261+71G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000483603
  gene symbol: STK25
  hgvsc: ENST00000483603.1:n.555+71G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000452891
  gene symbol: STK25
  hgvsc: ENST00000452891.1:n.490+71G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000385541
  ensembl transcript: ENST00000405585
  gene symbol: STK25
  hgvsc: ENST00000405585.1:c.31-611G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000384162
  ensembl transcript: ENST00000403346
  gene symbol: STK25
  hgvsc: ENST00000403346.3:c.261+71G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000403866
  ensembl transcript: ENST00000440109
  gene symbol: STK25
  hgvsc: ENST00000440109.1:c.-22+71G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000495372
  gene symbol: STK25
  hgvsc: ENST00000495372.1:n.511G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000461760
  gene symbol: STK25
  hgvsc: ENST00000461760.1:n.77-1126G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000403607
  ensembl transcript: ENST00000442307
  gene symbol: STK25
  hgvsc: ENST00000442307.1:c.-22+71G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000496159
  gene symbol: STK25
  hgvsc: ENST00000496159.1:n.171+121G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000384444
  ensembl transcript: ENST00000405883
  gene symbol: STK25
  hgvsc: ENST00000405883.3:c.31-611G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000395104
  ensembl transcript: ENST00000413760
  gene symbol: STK25
  hgvsc: ENST00000413760.1:c.-22+71G>A
  variant of: http://identifiers.org/hgnc/11404
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Ser111Asn
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD

2-242440836-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 242440836
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 242440836
    reference: chr 2
allele count: 1
allele frequency: 2.524232633279483e-5
allele num: 39616
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000384444
  ensembl transcript: ENST00000405883
  gene symbol: STK25
  hgvsc: ENST00000405883.3:c.31-625G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000406208
  ensembl transcript: ENST00000439101
  gene symbol: STK25
  hgvsc: ENST00000439101.1:c.-73+57G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000492127
  gene symbol: STK25
  hgvsc: ENST00000492127.1:n.221+57G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000417020
  ensembl transcript: ENST00000424537
  gene symbol: STK25
  hgvsc: ENST00000424537.1:c.31-1140G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000404960
  ensembl transcript: ENST00000429279
  gene symbol: STK25
  hgvsc: ENST00000429279.1:c.-22+57G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000436917
  gene symbol: STK25
  hgvsc: ENST00000436917.1:n.439+57G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000385687
  ensembl transcript: ENST00000401869
  gene symbol: STK25
  hgvsc: ENST00000401869.1:c.261+57G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000446008
  ensembl transcript: ENST00000535007
  gene symbol: STK25
  hgvsc: ENST00000535007.1:c.-22+57G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000414191
  ensembl transcript: ENST00000426941
  gene symbol: STK25
  hgvsc: ENST00000426941.1:c.318G>A
  hgvsp: ENSP00000414191.1:p.Met106Ile
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000495372
  gene symbol: STK25
  hgvsc: ENST00000495372.1:n.497G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000385541
  ensembl transcript: ENST00000405585
  gene symbol: STK25
  hgvsc: ENST00000405585.1:c.31-625G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000461760
  gene symbol: STK25
  hgvsc: ENST00000461760.1:n.77-1140G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000403607
  ensembl transcript: ENST00000442307
  gene symbol: STK25
  hgvsc: ENST00000442307.1:c.-22+57G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000403866
  ensembl transcript: ENST00000440109
  gene symbol: STK25
  hgvsc: ENST00000440109.1:c.-22+57G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000483603
  gene symbol: STK25
  hgvsc: ENST00000483603.1:n.555+57G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000401114
  ensembl transcript: ENST00000435225
  gene symbol: STK25
  hgvsc: ENST00000435225.1:c.-22+57G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000399212
  ensembl transcript: ENST00000450497
  gene symbol: STK25
  hgvsc: ENST00000450497.1:c.-303+57G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000384162
  ensembl transcript: ENST00000403346
  gene symbol: STK25
  hgvsc: ENST00000403346.3:c.261+57G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000444886
  ensembl transcript: ENST00000543554
  gene symbol: STK25
  hgvsc: ENST00000543554.1:c.-22+57G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000412617
  ensembl transcript: ENST00000436402
  gene symbol: STK25
  hgvsc: ENST00000436402.1:c.261+57G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000325748
  ensembl transcript: ENST00000316586
  gene symbol: STK25
  hgvsc: ENST00000316586.4:c.261+57G>A
  variant of: http://identifiers.org/hgnc/11404
canonical: false
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Met106Ile
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: Other
population: African
population: European (Finnish)
population: South Asian
population: East Asian
reference allele: C
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum

2-242440838-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 242440838
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 242440838
    reference: chr 2
allele count: 9
allele frequency: 2.189994160015573e-4
allele num: 41096
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000384162
  ensembl transcript: ENST00000403346
  gene symbol: STK25
  hgvsc: ENST00000403346.3:c.261+55A>G
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000404960
  ensembl transcript: ENST00000429279
  gene symbol: STK25
  hgvsc: ENST00000429279.1:c.-22+55A>G
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000446008
  ensembl transcript: ENST00000535007
  gene symbol: STK25
  hgvsc: ENST00000535007.1:c.-22+55A>G
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000483603
  gene symbol: STK25
  hgvsc: ENST00000483603.1:n.555+55A>G
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000385541
  ensembl transcript: ENST00000405585
  gene symbol: STK25
  hgvsc: ENST00000405585.1:c.31-627A>G
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000495372
  gene symbol: STK25
  hgvsc: ENST00000495372.1:n.495A>G
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000403866
  ensembl transcript: ENST00000440109
  gene symbol: STK25
  hgvsc: ENST00000440109.1:c.-22+55A>G
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000385687
  ensembl transcript: ENST00000401869
  gene symbol: STK25
  hgvsc: ENST00000401869.1:c.261+55A>G
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000325748
  ensembl transcript: ENST00000316586
  gene symbol: STK25
  hgvsc: ENST00000316586.4:c.261+55A>G
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000412617
  ensembl transcript: ENST00000436402
  gene symbol: STK25
  hgvsc: ENST00000436402.1:c.261+55A>G
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000403607
  ensembl transcript: ENST00000442307
  gene symbol: STK25
  hgvsc: ENST00000442307.1:c.-22+55A>G
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000492127
  gene symbol: STK25
  hgvsc: ENST00000492127.1:n.221+55A>G
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000395104
  ensembl transcript: ENST00000413760
  gene symbol: STK25
  hgvsc: ENST00000413760.1:c.-22+55A>G
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000461760
  gene symbol: STK25
  hgvsc: ENST00000461760.1:n.77-1142A>G
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000401114
  ensembl transcript: ENST00000435225
  gene symbol: STK25
  hgvsc: ENST00000435225.1:c.-22+55A>G
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000414191
  ensembl transcript: ENST00000426941
  gene symbol: STK25
  hgvsc: ENST00000426941.1:c.316A>G
  hgvsp: ENSP00000414191.1:p.Met106Val
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000496159
  gene symbol: STK25
  hgvsc: ENST00000496159.1:n.171+105A>G
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000399212
  ensembl transcript: ENST00000450497
  gene symbol: STK25
  hgvsc: ENST00000450497.1:c.-303+55A>G
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000444886
  ensembl transcript: ENST00000543554
  gene symbol: STK25
  hgvsc: ENST00000543554.1:c.-22+55A>G
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000384444
  ensembl transcript: ENST00000405883
  gene symbol: STK25
  hgvsc: ENST00000405883.3:c.31-627A>G
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000452891
  gene symbol: STK25
  hgvsc: ENST00000452891.1:n.490+55A>G
  variant of: http://identifiers.org/hgnc/11404
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Met106Val
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: South Asian
population: African
population: Other
population: European (Finnish)
population: East Asian
reference allele: T
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: BaseQRankSum

2-242440839-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 242440839
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 242440839
    reference: chr 2
allele count: 1
allele frequency: 2.402344688415894e-5
allele num: 41626
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000414191
  ensembl transcript: ENST00000426941
  gene symbol: STK25
  hgvsc: ENST00000426941.1:c.315C>T
  hgvsp: ENST00000426941.1:c.315C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000446008
  ensembl transcript: ENST00000535007
  gene symbol: STK25
  hgvsc: ENST00000535007.1:c.-22+54C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000452891
  gene symbol: STK25
  hgvsc: ENST00000452891.1:n.490+54C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000495372
  gene symbol: STK25
  hgvsc: ENST00000495372.1:n.494C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000384444
  ensembl transcript: ENST00000405883
  gene symbol: STK25
  hgvsc: ENST00000405883.3:c.31-628C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000399212
  ensembl transcript: ENST00000450497
  gene symbol: STK25
  hgvsc: ENST00000450497.1:c.-303+54C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000403866
  ensembl transcript: ENST00000440109
  gene symbol: STK25
  hgvsc: ENST00000440109.1:c.-22+54C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000492127
  gene symbol: STK25
  hgvsc: ENST00000492127.1:n.221+54C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000404960
  ensembl transcript: ENST00000429279
  gene symbol: STK25
  hgvsc: ENST00000429279.1:c.-22+54C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000385687
  ensembl transcript: ENST00000401869
  gene symbol: STK25
  hgvsc: ENST00000401869.1:c.261+54C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000401114
  ensembl transcript: ENST00000435225
  gene symbol: STK25
  hgvsc: ENST00000435225.1:c.-22+54C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000385541
  ensembl transcript: ENST00000405585
  gene symbol: STK25
  hgvsc: ENST00000405585.1:c.31-628C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000444886
  ensembl transcript: ENST00000543554
  gene symbol: STK25
  hgvsc: ENST00000543554.1:c.-22+54C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000403607
  ensembl transcript: ENST00000442307
  gene symbol: STK25
  hgvsc: ENST00000442307.1:c.-22+54C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000417020
  ensembl transcript: ENST00000424537
  gene symbol: STK25
  hgvsc: ENST00000424537.1:c.31-1143C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000395104
  ensembl transcript: ENST00000413760
  gene symbol: STK25
  hgvsc: ENST00000413760.1:c.-22+54C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000384162
  ensembl transcript: ENST00000403346
  gene symbol: STK25
  hgvsc: ENST00000403346.3:c.261+54C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000325748
  ensembl transcript: ENST00000316586
  gene symbol: STK25
  hgvsc: ENST00000316586.4:c.261+54C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000412617
  ensembl transcript: ENST00000436402
  gene symbol: STK25
  hgvsc: ENST00000436402.1:c.261+54C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000436917
  gene symbol: STK25
  hgvsc: ENST00000436917.1:n.439+54C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000461760
  gene symbol: STK25
  hgvsc: ENST00000461760.1:n.77-1143C>T
  variant of: http://identifiers.org/hgnc/11404
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Ser105Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Other
population: African
population: Latino
population: South Asian
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum

2-242440843-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 242440843
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 242440843
    reference: chr 2
allele count: 1
allele frequency: 2.245777937477542e-5
allele num: 44528
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000495372
  gene symbol: STK25
  hgvsc: ENST00000495372.1:n.490C>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000395104
  ensembl transcript: ENST00000413760
  gene symbol: STK25
  hgvsc: ENST00000413760.1:c.-22+50C>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000403607
  ensembl transcript: ENST00000442307
  gene symbol: STK25
  hgvsc: ENST00000442307.1:c.-22+50C>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000385687
  ensembl transcript: ENST00000401869
  gene symbol: STK25
  hgvsc: ENST00000401869.1:c.261+50C>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000385541
  ensembl transcript: ENST00000405585
  gene symbol: STK25
  hgvsc: ENST00000405585.1:c.31-632C>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000483603
  gene symbol: STK25
  hgvsc: ENST00000483603.1:n.555+50C>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000325748
  ensembl transcript: ENST00000316586
  gene symbol: STK25
  hgvsc: ENST00000316586.4:c.261+50C>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000417020
  ensembl transcript: ENST00000424537
  gene symbol: STK25
  hgvsc: ENST00000424537.1:c.31-1147C>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000401114
  ensembl transcript: ENST00000435225
  gene symbol: STK25
  hgvsc: ENST00000435225.1:c.-22+50C>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000412617
  ensembl transcript: ENST00000436402
  gene symbol: STK25
  hgvsc: ENST00000436402.1:c.261+50C>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000414191
  ensembl transcript: ENST00000426941
  gene symbol: STK25
  hgvsc: ENST00000426941.1:c.311C>A
  hgvsp: ENSP00000414191.1:p.Ser104Tyr
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000452891
  gene symbol: STK25
  hgvsc: ENST00000452891.1:n.490+50C>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000384162
  ensembl transcript: ENST00000403346
  gene symbol: STK25
  hgvsc: ENST00000403346.3:c.261+50C>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000492127
  gene symbol: STK25
  hgvsc: ENST00000492127.1:n.221+50C>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000446008
  ensembl transcript: ENST00000535007
  gene symbol: STK25
  hgvsc: ENST00000535007.1:c.-22+50C>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000403866
  ensembl transcript: ENST00000440109
  gene symbol: STK25
  hgvsc: ENST00000440109.1:c.-22+50C>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000444886
  ensembl transcript: ENST00000543554
  gene symbol: STK25
  hgvsc: ENST00000543554.1:c.-22+50C>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000404960
  ensembl transcript: ENST00000429279
  gene symbol: STK25
  hgvsc: ENST00000429279.1:c.-22+50C>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000384444
  ensembl transcript: ENST00000405883
  gene symbol: STK25
  hgvsc: ENST00000405883.3:c.31-632C>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000399212
  ensembl transcript: ENST00000450497
  gene symbol: STK25
  hgvsc: ENST00000450497.1:c.-303+50C>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000406208
  ensembl transcript: ENST00000439101
  gene symbol: STK25
  hgvsc: ENST00000439101.1:c.-73+50C>A
  variant of: http://identifiers.org/hgnc/11404
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Ser104Tyr
num of homozygotes: 0
population: European (Finnish)
population: Other
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
population: East Asian
reference allele: G
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum

http://identifiers.org/exac.variant/2-242440848-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 242440848
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 242440848
    reference: chr 2
allele count: 54
allele frequency: 1.114643107790117e-3
allele num: 48446
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000385687
  ensembl transcript: ENST00000401869
  gene symbol: STK25
  hgvsc: ENST00000401869.1:c.261+45G>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000414191
  ensembl transcript: ENST00000426941
  gene symbol: STK25
  hgvsc: ENST00000426941.1:c.306G>T
  hgvsp: ENST00000426941.1:c.306G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000403866
  ensembl transcript: ENST00000440109
  gene symbol: STK25
  hgvsc: ENST00000440109.1:c.-22+45G>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000495372
  gene symbol: STK25
  hgvsc: ENST00000495372.1:n.485G>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000403607
  ensembl transcript: ENST00000442307
  gene symbol: STK25
  hgvsc: ENST00000442307.1:c.-22+45G>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000412617
  ensembl transcript: ENST00000436402
  gene symbol: STK25
  hgvsc: ENST00000436402.1:c.261+45G>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000483603
  gene symbol: STK25
  hgvsc: ENST00000483603.1:n.555+45G>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000417020
  ensembl transcript: ENST00000424537
  gene symbol: STK25
  hgvsc: ENST00000424537.1:c.31-1152G>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000395104
  ensembl transcript: ENST00000413760
  gene symbol: STK25
  hgvsc: ENST00000413760.1:c.-22+45G>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000406208
  ensembl transcript: ENST00000439101
  gene symbol: STK25
  hgvsc: ENST00000439101.1:c.-73+45G>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000492127
  gene symbol: STK25
  hgvsc: ENST00000492127.1:n.221+45G>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000444886
  ensembl transcript: ENST00000543554
  gene symbol: STK25
  hgvsc: ENST00000543554.1:c.-22+45G>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000404960
  ensembl transcript: ENST00000429279
  gene symbol: STK25
  hgvsc: ENST00000429279.1:c.-22+45G>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000385541
  ensembl transcript: ENST00000405585
  gene symbol: STK25
  hgvsc: ENST00000405585.1:c.31-637G>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000384162
  ensembl transcript: ENST00000403346
  gene symbol: STK25
  hgvsc: ENST00000403346.3:c.261+45G>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000325748
  ensembl transcript: ENST00000316586
  gene symbol: STK25
  hgvsc: ENST00000316586.4:c.261+45G>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000384444
  ensembl transcript: ENST00000405883
  gene symbol: STK25
  hgvsc: ENST00000405883.3:c.31-637G>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000436917
  gene symbol: STK25
  hgvsc: ENST00000436917.1:n.439+45G>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000446008
  ensembl transcript: ENST00000535007
  gene symbol: STK25
  hgvsc: ENST00000535007.1:c.-22+45G>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000452891
  gene symbol: STK25
  hgvsc: ENST00000452891.1:n.490+45G>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000399212
  ensembl transcript: ENST00000450497
  gene symbol: STK25
  hgvsc: ENST00000450497.1:c.-303+45G>T
  variant of: http://identifiers.org/hgnc/11404
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Arg102Arg
num of homozygotes: 0
population: Latino
population: Other
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
reference allele: C
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum

2-242440849-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 242440849
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 242440849
    reference: chr 2
allele count: 7
allele frequency: 1.376056614900727e-4
allele num: 50870
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000495372
  gene symbol: STK25
  hgvsc: ENST00000495372.1:n.484G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000403866
  ensembl transcript: ENST00000440109
  gene symbol: STK25
  hgvsc: ENST00000440109.1:c.-22+44G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000414191
  ensembl transcript: ENST00000426941
  gene symbol: STK25
  hgvsc: ENST00000426941.1:c.305G>A
  hgvsp: ENSP00000414191.1:p.Arg102Gln
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000385541
  ensembl transcript: ENST00000405585
  gene symbol: STK25
  hgvsc: ENST00000405585.1:c.31-638G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000492127
  gene symbol: STK25
  hgvsc: ENST00000492127.1:n.221+44G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000417020
  ensembl transcript: ENST00000424537
  gene symbol: STK25
  hgvsc: ENST00000424537.1:c.31-1153G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000444886
  ensembl transcript: ENST00000543554
  gene symbol: STK25
  hgvsc: ENST00000543554.1:c.-22+44G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000395104
  ensembl transcript: ENST00000413760
  gene symbol: STK25
  hgvsc: ENST00000413760.1:c.-22+44G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000452891
  gene symbol: STK25
  hgvsc: ENST00000452891.1:n.490+44G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000406208
  ensembl transcript: ENST00000439101
  gene symbol: STK25
  hgvsc: ENST00000439101.1:c.-73+44G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000401114
  ensembl transcript: ENST00000435225
  gene symbol: STK25
  hgvsc: ENST00000435225.1:c.-22+44G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000325748
  ensembl transcript: ENST00000316586
  gene symbol: STK25
  hgvsc: ENST00000316586.4:c.261+44G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000446008
  ensembl transcript: ENST00000535007
  gene symbol: STK25
  hgvsc: ENST00000535007.1:c.-22+44G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000403607
  ensembl transcript: ENST00000442307
  gene symbol: STK25
  hgvsc: ENST00000442307.1:c.-22+44G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000385687
  ensembl transcript: ENST00000401869
  gene symbol: STK25
  hgvsc: ENST00000401869.1:c.261+44G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000461760
  gene symbol: STK25
  hgvsc: ENST00000461760.1:n.77-1153G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000412617
  ensembl transcript: ENST00000436402
  gene symbol: STK25
  hgvsc: ENST00000436402.1:c.261+44G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000436917
  gene symbol: STK25
  hgvsc: ENST00000436917.1:n.439+44G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000384162
  ensembl transcript: ENST00000403346
  gene symbol: STK25
  hgvsc: ENST00000403346.3:c.261+44G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000483603
  gene symbol: STK25
  hgvsc: ENST00000483603.1:n.555+44G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000384444
  ensembl transcript: ENST00000405883
  gene symbol: STK25
  hgvsc: ENST00000405883.3:c.31-638G>A
  variant of: http://identifiers.org/hgnc/11404
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Arg102Gln
num of homozygotes: 0
population: East Asian
population: Other
population: European (Finnish)
population: South Asian
population: Latino
population: European (Non-Finnish)
population: African
reference allele: C
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: DP

2-242440850-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 242440850
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 242440850
    reference: chr 2
allele count: 2
allele frequency: 3.722869587878337e-5
allele num: 53722
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000404960
  ensembl transcript: ENST00000429279
  gene symbol: STK25
  hgvsc: ENST00000429279.1:c.-22+43C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000385687
  ensembl transcript: ENST00000401869
  gene symbol: STK25
  hgvsc: ENST00000401869.1:c.261+43C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000446008
  ensembl transcript: ENST00000535007
  gene symbol: STK25
  hgvsc: ENST00000535007.1:c.-22+43C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000452891
  gene symbol: STK25
  hgvsc: ENST00000452891.1:n.490+43C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000414191
  ensembl transcript: ENST00000426941
  gene symbol: STK25
  hgvsc: ENST00000426941.1:c.304C>T
  hgvsp: ENSP00000414191.1:p.Arg102Trp
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000325748
  ensembl transcript: ENST00000316586
  gene symbol: STK25
  hgvsc: ENST00000316586.4:c.261+43C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000492127
  gene symbol: STK25
  hgvsc: ENST00000492127.1:n.221+43C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000403607
  ensembl transcript: ENST00000442307
  gene symbol: STK25
  hgvsc: ENST00000442307.1:c.-22+43C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000417020
  ensembl transcript: ENST00000424537
  gene symbol: STK25
  hgvsc: ENST00000424537.1:c.31-1154C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000436917
  gene symbol: STK25
  hgvsc: ENST00000436917.1:n.439+43C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000401114
  ensembl transcript: ENST00000435225
  gene symbol: STK25
  hgvsc: ENST00000435225.1:c.-22+43C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000406208
  ensembl transcript: ENST00000439101
  gene symbol: STK25
  hgvsc: ENST00000439101.1:c.-73+43C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000399212
  ensembl transcript: ENST00000450497
  gene symbol: STK25
  hgvsc: ENST00000450497.1:c.-303+43C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000385541
  ensembl transcript: ENST00000405585
  gene symbol: STK25
  hgvsc: ENST00000405585.1:c.31-639C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000403866
  ensembl transcript: ENST00000440109
  gene symbol: STK25
  hgvsc: ENST00000440109.1:c.-22+43C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000495372
  gene symbol: STK25
  hgvsc: ENST00000495372.1:n.483C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000384162
  ensembl transcript: ENST00000403346
  gene symbol: STK25
  hgvsc: ENST00000403346.3:c.261+43C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000496159
  gene symbol: STK25
  hgvsc: ENST00000496159.1:n.171+93C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000461760
  gene symbol: STK25
  hgvsc: ENST00000461760.1:n.77-1154C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000412617
  ensembl transcript: ENST00000436402
  gene symbol: STK25
  hgvsc: ENST00000436402.1:c.261+43C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000483603
  gene symbol: STK25
  hgvsc: ENST00000483603.1:n.555+43C>T
  variant of: http://identifiers.org/hgnc/11404
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Arg102Trp
num of homozygotes: 0
population: South Asian
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
reference allele: G
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum

http://identifiers.org/exac.variant/2-242440865-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 242440865
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 242440865
    reference: chr 2
allele count: 1
allele frequency: 1.330034846912989e-5
allele num: 75186
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000404960
  ensembl transcript: ENST00000429279
  gene symbol: STK25
  hgvsc: ENST00000429279.1:c.-22+28T>G
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000446008
  ensembl transcript: ENST00000535007
  gene symbol: STK25
  hgvsc: ENST00000535007.1:c.-22+28T>G
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000417020
  ensembl transcript: ENST00000424537
  gene symbol: STK25
  hgvsc: ENST00000424537.1:c.31-1169T>G
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000395104
  ensembl transcript: ENST00000413760
  gene symbol: STK25
  hgvsc: ENST00000413760.1:c.-22+28T>G
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000436917
  gene symbol: STK25
  hgvsc: ENST00000436917.1:n.439+28T>G
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000399212
  ensembl transcript: ENST00000450497
  gene symbol: STK25
  hgvsc: ENST00000450497.1:c.-303+28T>G
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000483603
  gene symbol: STK25
  hgvsc: ENST00000483603.1:n.555+28T>G
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000403607
  ensembl transcript: ENST00000442307
  gene symbol: STK25
  hgvsc: ENST00000442307.1:c.-22+28T>G
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000492127
  gene symbol: STK25
  hgvsc: ENST00000492127.1:n.221+28T>G
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000384162
  ensembl transcript: ENST00000403346
  gene symbol: STK25
  hgvsc: ENST00000403346.3:c.261+28T>G
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000325748
  ensembl transcript: ENST00000316586
  gene symbol: STK25
  hgvsc: ENST00000316586.4:c.261+28T>G
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000452891
  gene symbol: STK25
  hgvsc: ENST00000452891.1:n.490+28T>G
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000414191
  ensembl transcript: ENST00000426941
  gene symbol: STK25
  hgvsc: ENST00000426941.1:c.289T>G
  hgvsp: ENSP00000414191.1:p.Cys97Gly
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000495372
  gene symbol: STK25
  hgvsc: ENST00000495372.1:n.468T>G
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000403866
  ensembl transcript: ENST00000440109
  gene symbol: STK25
  hgvsc: ENST00000440109.1:c.-22+28T>G
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000406208
  ensembl transcript: ENST00000439101
  gene symbol: STK25
  hgvsc: ENST00000439101.1:c.-73+28T>G
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000385541
  ensembl transcript: ENST00000405585
  gene symbol: STK25
  hgvsc: ENST00000405585.1:c.31-654T>G
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000384444
  ensembl transcript: ENST00000405883
  gene symbol: STK25
  hgvsc: ENST00000405883.3:c.31-654T>G
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000385687
  ensembl transcript: ENST00000401869
  gene symbol: STK25
  hgvsc: ENST00000401869.1:c.261+28T>G
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000461760
  gene symbol: STK25
  hgvsc: ENST00000461760.1:n.77-1169T>G
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000401114
  ensembl transcript: ENST00000435225
  gene symbol: STK25
  hgvsc: ENST00000435225.1:c.-22+28T>G
  variant of: http://identifiers.org/hgnc/11404
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Cys97Gly
num of homozygotes: 0
population: East Asian
population: Other
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: A
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum

2-242440869-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 242440869
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 242440869
    reference: chr 2
allele count: 2
allele frequency: 2.515786560668193e-5
allele num: 79498
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000384162
  ensembl transcript: ENST00000403346
  gene symbol: STK25
  hgvsc: ENST00000403346.3:c.261+24A>G
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000404960
  ensembl transcript: ENST00000429279
  gene symbol: STK25
  hgvsc: ENST00000429279.1:c.-22+24A>G
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000399212
  ensembl transcript: ENST00000450497
  gene symbol: STK25
  hgvsc: ENST00000450497.1:c.-303+24A>G
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000452891
  gene symbol: STK25
  hgvsc: ENST00000452891.1:n.490+24A>G
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000496159
  gene symbol: STK25
  hgvsc: ENST00000496159.1:n.171+74A>G
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000417020
  ensembl transcript: ENST00000424537
  gene symbol: STK25
  hgvsc: ENST00000424537.1:c.31-1173A>G
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000403607
  ensembl transcript: ENST00000442307
  gene symbol: STK25
  hgvsc: ENST00000442307.1:c.-22+24A>G
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000495372
  gene symbol: STK25
  hgvsc: ENST00000495372.1:n.464A>G
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000414191
  ensembl transcript: ENST00000426941
  gene symbol: STK25
  hgvsc: ENST00000426941.1:c.285A>G
  hgvsp: ENST00000426941.1:c.285A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000385687
  ensembl transcript: ENST00000401869
  gene symbol: STK25
  hgvsc: ENST00000401869.1:c.261+24A>G
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000403866
  ensembl transcript: ENST00000440109
  gene symbol: STK25
  hgvsc: ENST00000440109.1:c.-22+24A>G
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000444886
  ensembl transcript: ENST00000543554
  gene symbol: STK25
  hgvsc: ENST00000543554.1:c.-22+24A>G
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000492127
  gene symbol: STK25
  hgvsc: ENST00000492127.1:n.221+24A>G
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000385541
  ensembl transcript: ENST00000405585
  gene symbol: STK25
  hgvsc: ENST00000405585.1:c.31-658A>G
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000412617
  ensembl transcript: ENST00000436402
  gene symbol: STK25
  hgvsc: ENST00000436402.1:c.261+24A>G
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000401114
  ensembl transcript: ENST00000435225
  gene symbol: STK25
  hgvsc: ENST00000435225.1:c.-22+24A>G
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000461760
  gene symbol: STK25
  hgvsc: ENST00000461760.1:n.77-1173A>G
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000483603
  gene symbol: STK25
  hgvsc: ENST00000483603.1:n.555+24A>G
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000395104
  ensembl transcript: ENST00000413760
  gene symbol: STK25
  hgvsc: ENST00000413760.1:c.-22+24A>G
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000446008
  ensembl transcript: ENST00000535007
  gene symbol: STK25
  hgvsc: ENST00000535007.1:c.-22+24A>G
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000406208
  ensembl transcript: ENST00000439101
  gene symbol: STK25
  hgvsc: ENST00000439101.1:c.-73+24A>G
  variant of: http://identifiers.org/hgnc/11404
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Gly95Gly
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
population: Other
population: Latino
population: South Asian
reference allele: T
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/2-242440871-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 242440871
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 242440871
    reference: chr 2
allele count: 2
allele frequency: 2.417093686551291e-5
allele num: 82744
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000452891
  gene symbol: STK25
  hgvsc: ENST00000452891.1:n.490+22G>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000461760
  gene symbol: STK25
  hgvsc: ENST00000461760.1:n.77-1175G>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000483603
  gene symbol: STK25
  hgvsc: ENST00000483603.1:n.555+22G>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000395104
  ensembl transcript: ENST00000413760
  gene symbol: STK25
  hgvsc: ENST00000413760.1:c.-22+22G>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000403866
  ensembl transcript: ENST00000440109
  gene symbol: STK25
  hgvsc: ENST00000440109.1:c.-22+22G>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000496159
  gene symbol: STK25
  hgvsc: ENST00000496159.1:n.171+72G>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000401114
  ensembl transcript: ENST00000435225
  gene symbol: STK25
  hgvsc: ENST00000435225.1:c.-22+22G>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000444886
  ensembl transcript: ENST00000543554
  gene symbol: STK25
  hgvsc: ENST00000543554.1:c.-22+22G>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000406208
  ensembl transcript: ENST00000439101
  gene symbol: STK25
  hgvsc: ENST00000439101.1:c.-73+22G>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000417020
  ensembl transcript: ENST00000424537
  gene symbol: STK25
  hgvsc: ENST00000424537.1:c.31-1175G>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000436917
  gene symbol: STK25
  hgvsc: ENST00000436917.1:n.439+22G>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000446008
  ensembl transcript: ENST00000535007
  gene symbol: STK25
  hgvsc: ENST00000535007.1:c.-22+22G>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000414191
  ensembl transcript: ENST00000426941
  gene symbol: STK25
  hgvsc: ENST00000426941.1:c.283G>T
  hgvsp: ENSP00000414191.1:p.Gly95Ter
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000403607
  ensembl transcript: ENST00000442307
  gene symbol: STK25
  hgvsc: ENST00000442307.1:c.-22+22G>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000495372
  gene symbol: STK25
  hgvsc: ENST00000495372.1:n.462G>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000492127
  gene symbol: STK25
  hgvsc: ENST00000492127.1:n.221+22G>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000399212
  ensembl transcript: ENST00000450497
  gene symbol: STK25
  hgvsc: ENST00000450497.1:c.-303+22G>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000385687
  ensembl transcript: ENST00000401869
  gene symbol: STK25
  hgvsc: ENST00000401869.1:c.261+22G>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000385541
  ensembl transcript: ENST00000405585
  gene symbol: STK25
  hgvsc: ENST00000405585.1:c.31-660G>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000384444
  ensembl transcript: ENST00000405883
  gene symbol: STK25
  hgvsc: ENST00000405883.3:c.31-660G>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000404960
  ensembl transcript: ENST00000429279
  gene symbol: STK25
  hgvsc: ENST00000429279.1:c.-22+22G>T
  variant of: http://identifiers.org/hgnc/11404
canonical: false
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Gly95Ter
num of homozygotes: 0
population: South Asian
population: African
population: European (Non-Finnish)
population: Other
population: Latino
population: East Asian
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD

2-242440873-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 242440873
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 242440873
    reference: chr 2
allele count: 2
allele frequency: 2.314546927438954e-5
allele num: 86410
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000483603
  gene symbol: STK25
  hgvsc: ENST00000483603.1:n.555+20G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000414191
  ensembl transcript: ENST00000426941
  gene symbol: STK25
  hgvsc: ENST00000426941.1:c.281G>A
  hgvsp: ENSP00000414191.1:p.Arg94Gln
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000495372
  gene symbol: STK25
  hgvsc: ENST00000495372.1:n.460G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000417020
  ensembl transcript: ENST00000424537
  gene symbol: STK25
  hgvsc: ENST00000424537.1:c.31-1177G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000395104
  ensembl transcript: ENST00000413760
  gene symbol: STK25
  hgvsc: ENST00000413760.1:c.-22+20G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000492127
  gene symbol: STK25
  hgvsc: ENST00000492127.1:n.221+20G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000403607
  ensembl transcript: ENST00000442307
  gene symbol: STK25
  hgvsc: ENST00000442307.1:c.-22+20G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000444886
  ensembl transcript: ENST00000543554
  gene symbol: STK25
  hgvsc: ENST00000543554.1:c.-22+20G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000406208
  ensembl transcript: ENST00000439101
  gene symbol: STK25
  hgvsc: ENST00000439101.1:c.-73+20G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000461760
  gene symbol: STK25
  hgvsc: ENST00000461760.1:n.77-1177G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000385687
  ensembl transcript: ENST00000401869
  gene symbol: STK25
  hgvsc: ENST00000401869.1:c.261+20G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000446008
  ensembl transcript: ENST00000535007
  gene symbol: STK25
  hgvsc: ENST00000535007.1:c.-22+20G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000384162
  ensembl transcript: ENST00000403346
  gene symbol: STK25
  hgvsc: ENST00000403346.3:c.261+20G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000403866
  ensembl transcript: ENST00000440109
  gene symbol: STK25
  hgvsc: ENST00000440109.1:c.-22+20G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000385541
  ensembl transcript: ENST00000405585
  gene symbol: STK25
  hgvsc: ENST00000405585.1:c.31-662G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000399212
  ensembl transcript: ENST00000450497
  gene symbol: STK25
  hgvsc: ENST00000450497.1:c.-303+20G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000384444
  ensembl transcript: ENST00000405883
  gene symbol: STK25
  hgvsc: ENST00000405883.3:c.31-662G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000404960
  ensembl transcript: ENST00000429279
  gene symbol: STK25
  hgvsc: ENST00000429279.1:c.-22+20G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000436917
  gene symbol: STK25
  hgvsc: ENST00000436917.1:n.439+20G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000401114
  ensembl transcript: ENST00000435225
  gene symbol: STK25
  hgvsc: ENST00000435225.1:c.-22+20G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000496159
  gene symbol: STK25
  hgvsc: ENST00000496159.1:n.171+70G>A
  variant of: http://identifiers.org/hgnc/11404
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Arg94Gln
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: Other
population: Latino
population: South Asian
population: European (Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP

2-242440874-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 242440874
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 242440874
    reference: chr 2
allele count: 3
allele frequency: 3.338675213675214e-5
allele num: 89856
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000384162
  ensembl transcript: ENST00000403346
  gene symbol: STK25
  hgvsc: ENST00000403346.3:c.261+19C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000406208
  ensembl transcript: ENST00000439101
  gene symbol: STK25
  hgvsc: ENST00000439101.1:c.-73+19C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000436917
  gene symbol: STK25
  hgvsc: ENST00000436917.1:n.439+19C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000461760
  gene symbol: STK25
  hgvsc: ENST00000461760.1:n.77-1178C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000414191
  ensembl transcript: ENST00000426941
  gene symbol: STK25
  hgvsc: ENST00000426941.1:c.280C>T
  hgvsp: ENSP00000414191.1:p.Arg94Trp
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000444886
  ensembl transcript: ENST00000543554
  gene symbol: STK25
  hgvsc: ENST00000543554.1:c.-22+19C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000395104
  ensembl transcript: ENST00000413760
  gene symbol: STK25
  hgvsc: ENST00000413760.1:c.-22+19C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000483603
  gene symbol: STK25
  hgvsc: ENST00000483603.1:n.555+19C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000403866
  ensembl transcript: ENST00000440109
  gene symbol: STK25
  hgvsc: ENST00000440109.1:c.-22+19C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000495372
  gene symbol: STK25
  hgvsc: ENST00000495372.1:n.459C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000385541
  ensembl transcript: ENST00000405585
  gene symbol: STK25
  hgvsc: ENST00000405585.1:c.31-663C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000385687
  ensembl transcript: ENST00000401869
  gene symbol: STK25
  hgvsc: ENST00000401869.1:c.261+19C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000399212
  ensembl transcript: ENST00000450497
  gene symbol: STK25
  hgvsc: ENST00000450497.1:c.-303+19C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000325748
  ensembl transcript: ENST00000316586
  gene symbol: STK25
  hgvsc: ENST00000316586.4:c.261+19C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000492127
  gene symbol: STK25
  hgvsc: ENST00000492127.1:n.221+19C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000496159
  gene symbol: STK25
  hgvsc: ENST00000496159.1:n.171+69C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000417020
  ensembl transcript: ENST00000424537
  gene symbol: STK25
  hgvsc: ENST00000424537.1:c.31-1178C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000403607
  ensembl transcript: ENST00000442307
  gene symbol: STK25
  hgvsc: ENST00000442307.1:c.-22+19C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000384444
  ensembl transcript: ENST00000405883
  gene symbol: STK25
  hgvsc: ENST00000405883.3:c.31-663C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000452891
  gene symbol: STK25
  hgvsc: ENST00000452891.1:n.490+19C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000412617
  ensembl transcript: ENST00000436402
  gene symbol: STK25
  hgvsc: ENST00000436402.1:c.261+19C>T
  variant of: http://identifiers.org/hgnc/11404
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Arg94Trp
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
population: Other
population: South Asian
population: East Asian
reference allele: G
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum

2-242440877-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 242440877
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 242440877
    reference: chr 2
allele count: 1
allele frequency: 1.030715316429602e-5
allele num: 97020
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000492127
  gene symbol: STK25
  hgvsc: ENST00000492127.1:n.221+16A>G
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000385687
  ensembl transcript: ENST00000401869
  gene symbol: STK25
  hgvsc: ENST00000401869.1:c.261+16A>G
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000412617
  ensembl transcript: ENST00000436402
  gene symbol: STK25
  hgvsc: ENST00000436402.1:c.261+16A>G
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000483603
  gene symbol: STK25
  hgvsc: ENST00000483603.1:n.555+16A>G
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000446008
  ensembl transcript: ENST00000535007
  gene symbol: STK25
  hgvsc: ENST00000535007.1:c.-22+16A>G
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000403607
  ensembl transcript: ENST00000442307
  gene symbol: STK25
  hgvsc: ENST00000442307.1:c.-22+16A>G
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000384444
  ensembl transcript: ENST00000405883
  gene symbol: STK25
  hgvsc: ENST00000405883.3:c.31-666A>G
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000452891
  gene symbol: STK25
  hgvsc: ENST00000452891.1:n.490+16A>G
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000385541
  ensembl transcript: ENST00000405585
  gene symbol: STK25
  hgvsc: ENST00000405585.1:c.31-666A>G
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000414191
  ensembl transcript: ENST00000426941
  gene symbol: STK25
  hgvsc: ENST00000426941.1:c.277A>G
  hgvsp: ENSP00000414191.1:p.Arg93Gly
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000404960
  ensembl transcript: ENST00000429279
  gene symbol: STK25
  hgvsc: ENST00000429279.1:c.-22+16A>G
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000395104
  ensembl transcript: ENST00000413760
  gene symbol: STK25
  hgvsc: ENST00000413760.1:c.-22+16A>G
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000495372
  gene symbol: STK25
  hgvsc: ENST00000495372.1:n.456A>G
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000444886
  ensembl transcript: ENST00000543554
  gene symbol: STK25
  hgvsc: ENST00000543554.1:c.-22+16A>G
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000384162
  ensembl transcript: ENST00000403346
  gene symbol: STK25
  hgvsc: ENST00000403346.3:c.261+16A>G
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000399212
  ensembl transcript: ENST00000450497
  gene symbol: STK25
  hgvsc: ENST00000450497.1:c.-303+16A>G
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000417020
  ensembl transcript: ENST00000424537
  gene symbol: STK25
  hgvsc: ENST00000424537.1:c.31-1181A>G
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000436917
  gene symbol: STK25
  hgvsc: ENST00000436917.1:n.439+16A>G
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000325748
  ensembl transcript: ENST00000316586
  gene symbol: STK25
  hgvsc: ENST00000316586.4:c.261+16A>G
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000401114
  ensembl transcript: ENST00000435225
  gene symbol: STK25
  hgvsc: ENST00000435225.1:c.-22+16A>G
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000406208
  ensembl transcript: ENST00000439101
  gene symbol: STK25
  hgvsc: ENST00000439101.1:c.-73+16A>G
  variant of: http://identifiers.org/hgnc/11404
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Arg93Gly
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD

2-242440878-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 242440878
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 242440878
    reference: chr 2
allele count: 2
allele frequency: 2.029509061757961e-5
allele num: 98546
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000492127
  gene symbol: STK25
  hgvsc: ENST00000492127.1:n.221+15G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000384444
  ensembl transcript: ENST00000405883
  gene symbol: STK25
  hgvsc: ENST00000405883.3:c.31-667G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000483603
  gene symbol: STK25
  hgvsc: ENST00000483603.1:n.555+15G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000399212
  ensembl transcript: ENST00000450497
  gene symbol: STK25
  hgvsc: ENST00000450497.1:c.-303+15G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000417020
  ensembl transcript: ENST00000424537
  gene symbol: STK25
  hgvsc: ENST00000424537.1:c.31-1182G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000325748
  ensembl transcript: ENST00000316586
  gene symbol: STK25
  hgvsc: ENST00000316586.4:c.261+15G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000496159
  gene symbol: STK25
  hgvsc: ENST00000496159.1:n.171+65G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000414191
  ensembl transcript: ENST00000426941
  gene symbol: STK25
  hgvsc: ENST00000426941.1:c.276G>A
  hgvsp: ENST00000426941.1:c.276G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000403866
  ensembl transcript: ENST00000440109
  gene symbol: STK25
  hgvsc: ENST00000440109.1:c.-22+15G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000444886
  ensembl transcript: ENST00000543554
  gene symbol: STK25
  hgvsc: ENST00000543554.1:c.-22+15G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000446008
  ensembl transcript: ENST00000535007
  gene symbol: STK25
  hgvsc: ENST00000535007.1:c.-22+15G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000461760
  gene symbol: STK25
  hgvsc: ENST00000461760.1:n.77-1182G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000385687
  ensembl transcript: ENST00000401869
  gene symbol: STK25
  hgvsc: ENST00000401869.1:c.261+15G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000401114
  ensembl transcript: ENST00000435225
  gene symbol: STK25
  hgvsc: ENST00000435225.1:c.-22+15G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000436917
  gene symbol: STK25
  hgvsc: ENST00000436917.1:n.439+15G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000385541
  ensembl transcript: ENST00000405585
  gene symbol: STK25
  hgvsc: ENST00000405585.1:c.31-667G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000452891
  gene symbol: STK25
  hgvsc: ENST00000452891.1:n.490+15G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000404960
  ensembl transcript: ENST00000429279
  gene symbol: STK25
  hgvsc: ENST00000429279.1:c.-22+15G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000403607
  ensembl transcript: ENST00000442307
  gene symbol: STK25
  hgvsc: ENST00000442307.1:c.-22+15G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000495372
  gene symbol: STK25
  hgvsc: ENST00000495372.1:n.455G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000406208
  ensembl transcript: ENST00000439101
  gene symbol: STK25
  hgvsc: ENST00000439101.1:c.-73+15G>A
  variant of: http://identifiers.org/hgnc/11404
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Gly92Gly
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: Latino
population: East Asian
population: African
population: European (Finnish)
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: QD
site quality: ClippingRankSum

2-242440886-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 242440886
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 242440886
    reference: chr 2
allele count: 2
allele frequency: 1.845120578629813e-5
allele num: 108394
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000384444
  ensembl transcript: ENST00000405883
  gene symbol: STK25
  hgvsc: ENST00000405883.3:c.31-675G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000417020
  ensembl transcript: ENST00000424537
  gene symbol: STK25
  hgvsc: ENST00000424537.1:c.31-1190G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000395104
  ensembl transcript: ENST00000413760
  gene symbol: STK25
  hgvsc: ENST00000413760.1:c.-22+7G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000414191
  ensembl transcript: ENST00000426941
  gene symbol: STK25
  hgvsc: ENST00000426941.1:c.268G>A
  hgvsp: ENSP00000414191.1:p.Val90Ile
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000492127
  gene symbol: STK25
  hgvsc: ENST00000492127.1:n.221+7G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000444886
  ensembl transcript: ENST00000543554
  gene symbol: STK25
  hgvsc: ENST00000543554.1:c.-22+7G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000385687
  ensembl transcript: ENST00000401869
  gene symbol: STK25
  hgvsc: ENST00000401869.1:c.261+7G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000403866
  ensembl transcript: ENST00000440109
  gene symbol: STK25
  hgvsc: ENST00000440109.1:c.-22+7G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000385541
  ensembl transcript: ENST00000405585
  gene symbol: STK25
  hgvsc: ENST00000405585.1:c.31-675G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000496159
  gene symbol: STK25
  hgvsc: ENST00000496159.1:n.171+57G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000384162
  ensembl transcript: ENST00000403346
  gene symbol: STK25
  hgvsc: ENST00000403346.3:c.261+7G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000403607
  ensembl transcript: ENST00000442307
  gene symbol: STK25
  hgvsc: ENST00000442307.1:c.-22+7G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000452891
  gene symbol: STK25
  hgvsc: ENST00000452891.1:n.490+7G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000325748
  ensembl transcript: ENST00000316586
  gene symbol: STK25
  hgvsc: ENST00000316586.4:c.261+7G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000406208
  ensembl transcript: ENST00000439101
  gene symbol: STK25
  hgvsc: ENST00000439101.1:c.-73+7G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000412617
  ensembl transcript: ENST00000436402
  gene symbol: STK25
  hgvsc: ENST00000436402.1:c.261+7G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000404960
  ensembl transcript: ENST00000429279
  gene symbol: STK25
  hgvsc: ENST00000429279.1:c.-22+7G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000401114
  ensembl transcript: ENST00000435225
  gene symbol: STK25
  hgvsc: ENST00000435225.1:c.-22+7G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000399212
  ensembl transcript: ENST00000450497
  gene symbol: STK25
  hgvsc: ENST00000450497.1:c.-303+7G>A
  variant of: http://identifiers.org/hgnc/11404
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Val90Ile
num of homozygotes: 0
population: African
population: South Asian
population: Other
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Latino
reference allele: C
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum

2-242440898-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 242440898
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 242440898
    reference: chr 2
allele count: 1
allele frequency: 8.634385577122331e-6
allele num: 115816
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000404960
  ensembl transcript: ENST00000429279
  gene symbol: STK25
  hgvsc: ENST00000429279.1:c.-27C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000412617
  ensembl transcript: ENST00000436402
  gene symbol: STK25
  hgvsc: ENST00000436402.1:c.256C>T
  hgvsp: ENST00000436402.1:c.256C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000452891
  gene symbol: STK25
  hgvsc: ENST00000452891.1:n.485C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000385541
  ensembl transcript: ENST00000405585
  gene symbol: STK25
  hgvsc: ENST00000405585.1:c.31-687C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000385687
  ensembl transcript: ENST00000401869
  gene symbol: STK25
  hgvsc: ENST00000401869.1:c.256C>T
  hgvsp: ENST00000401869.1:c.256C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000325748
  ensembl transcript: ENST00000316586
  gene symbol: STK25
  hgvsc: ENST00000316586.4:c.256C>T
  hgvsp: ENST00000316586.4:c.256C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000417020
  ensembl transcript: ENST00000424537
  gene symbol: STK25
  hgvsc: ENST00000424537.1:c.31-1202C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000436917
  gene symbol: STK25
  hgvsc: ENST00000436917.1:n.434C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000403607
  ensembl transcript: ENST00000442307
  gene symbol: STK25
  hgvsc: ENST00000442307.1:c.-27C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000403866
  ensembl transcript: ENST00000440109
  gene symbol: STK25
  hgvsc: ENST00000440109.1:c.-27C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000492127
  gene symbol: STK25
  hgvsc: ENST00000492127.1:n.216C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000483603
  gene symbol: STK25
  hgvsc: ENST00000483603.1:n.550C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000461760
  gene symbol: STK25
  hgvsc: ENST00000461760.1:n.77-1202C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000446008
  ensembl transcript: ENST00000535007
  gene symbol: STK25
  hgvsc: ENST00000535007.1:c.-27C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000384162
  ensembl transcript: ENST00000403346
  gene symbol: STK25
  hgvsc: ENST00000403346.3:c.256C>T
  hgvsp: ENST00000403346.3:c.256C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000401114
  ensembl transcript: ENST00000435225
  gene symbol: STK25
  hgvsc: ENST00000435225.1:c.-27C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000444886
  ensembl transcript: ENST00000543554
  gene symbol: STK25
  hgvsc: ENST00000543554.1:c.-27C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000384444
  ensembl transcript: ENST00000405883
  gene symbol: STK25
  hgvsc: ENST00000405883.3:c.31-687C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000414191
  ensembl transcript: ENST00000426941
  gene symbol: STK25
  hgvsc: ENST00000426941.1:c.256C>T
  hgvsp: ENST00000426941.1:c.256C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000406208
  ensembl transcript: ENST00000439101
  gene symbol: STK25
  hgvsc: ENST00000439101.1:c.-78C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000495372
  gene symbol: STK25
  hgvsc: ENST00000495372.1:n.435C>T
  variant of: http://identifiers.org/hgnc/11404
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Leu86Leu
num of homozygotes: 0
population: Other
population: Latino
population: European (Finnish)
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ

2-242440903-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 242440903
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 242440903
    reference: chr 2
allele count: 1
allele frequency: 8.524277141298417e-6
allele num: 117312
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000404960
  ensembl transcript: ENST00000429279
  gene symbol: STK25
  hgvsc: ENST00000429279.1:c.-32C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000399212
  ensembl transcript: ENST00000450497
  gene symbol: STK25
  hgvsc: ENST00000450497.1:c.-313C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000444886
  ensembl transcript: ENST00000543554
  gene symbol: STK25
  hgvsc: ENST00000543554.1:c.-32C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000403607
  ensembl transcript: ENST00000442307
  gene symbol: STK25
  hgvsc: ENST00000442307.1:c.-32C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000446008
  ensembl transcript: ENST00000535007
  gene symbol: STK25
  hgvsc: ENST00000535007.1:c.-32C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000436917
  gene symbol: STK25
  hgvsc: ENST00000436917.1:n.429C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000403866
  ensembl transcript: ENST00000440109
  gene symbol: STK25
  hgvsc: ENST00000440109.1:c.-32C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000412617
  ensembl transcript: ENST00000436402
  gene symbol: STK25
  hgvsc: ENST00000436402.1:c.251C>T
  hgvsp: ENSP00000412617.1:p.Ser84Phe
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000384162
  ensembl transcript: ENST00000403346
  gene symbol: STK25
  hgvsc: ENST00000403346.3:c.251C>T
  hgvsp: ENSP00000384162.3:p.Ser84Phe
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000385687
  ensembl transcript: ENST00000401869
  gene symbol: STK25
  hgvsc: ENST00000401869.1:c.251C>T
  hgvsp: ENSP00000385687.1:p.Ser84Phe
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000401114
  ensembl transcript: ENST00000435225
  gene symbol: STK25
  hgvsc: ENST00000435225.1:c.-32C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000483603
  gene symbol: STK25
  hgvsc: ENST00000483603.1:n.545C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000395104
  ensembl transcript: ENST00000413760
  gene symbol: STK25
  hgvsc: ENST00000413760.1:c.-32C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000414191
  ensembl transcript: ENST00000426941
  gene symbol: STK25
  hgvsc: ENST00000426941.1:c.251C>T
  hgvsp: ENSP00000414191.1:p.Ser84Phe
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000496159
  gene symbol: STK25
  hgvsc: ENST00000496159.1:n.171+40C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000325748
  ensembl transcript: ENST00000316586
  gene symbol: STK25
  hgvsc: ENST00000316586.4:c.251C>T
  hgvsp: ENSP00000325748.4:p.Ser84Phe
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000417020
  ensembl transcript: ENST00000424537
  gene symbol: STK25
  hgvsc: ENST00000424537.1:c.31-1207C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000406208
  ensembl transcript: ENST00000439101
  gene symbol: STK25
  hgvsc: ENST00000439101.1:c.-83C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000452891
  gene symbol: STK25
  hgvsc: ENST00000452891.1:n.480C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000385541
  ensembl transcript: ENST00000405585
  gene symbol: STK25
  hgvsc: ENST00000405585.1:c.31-692C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000495372
  gene symbol: STK25
  hgvsc: ENST00000495372.1:n.430C>T
  variant of: http://identifiers.org/hgnc/11404
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Ser84Phe
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: ReadPosRankSum

2-242440908-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 242440908
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 242440908
    reference: chr 2
allele count: 30
allele frequency: 2.532842524737429e-4
allele num: 118444
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000403866
  ensembl transcript: ENST00000440109
  gene symbol: STK25
  hgvsc: ENST00000440109.1:c.-37T>C
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000492127
  gene symbol: STK25
  hgvsc: ENST00000492127.1:n.206T>C
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000461760
  gene symbol: STK25
  hgvsc: ENST00000461760.1:n.77-1212T>C
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000385687
  ensembl transcript: ENST00000401869
  gene symbol: STK25
  hgvsc: ENST00000401869.1:c.246T>C
  hgvsp: ENST00000401869.1:c.246T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000414191
  ensembl transcript: ENST00000426941
  gene symbol: STK25
  hgvsc: ENST00000426941.1:c.246T>C
  hgvsp: ENST00000426941.1:c.246T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000384162
  ensembl transcript: ENST00000403346
  gene symbol: STK25
  hgvsc: ENST00000403346.3:c.246T>C
  hgvsp: ENST00000403346.3:c.246T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000412617
  ensembl transcript: ENST00000436402
  gene symbol: STK25
  hgvsc: ENST00000436402.1:c.246T>C
  hgvsp: ENST00000436402.1:c.246T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000325748
  ensembl transcript: ENST00000316586
  gene symbol: STK25
  hgvsc: ENST00000316586.4:c.246T>C
  hgvsp: ENST00000316586.4:c.246T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000403607
  ensembl transcript: ENST00000442307
  gene symbol: STK25
  hgvsc: ENST00000442307.1:c.-37T>C
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000406208
  ensembl transcript: ENST00000439101
  gene symbol: STK25
  hgvsc: ENST00000439101.1:c.-88T>C
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000495372
  gene symbol: STK25
  hgvsc: ENST00000495372.1:n.425T>C
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000436917
  gene symbol: STK25
  hgvsc: ENST00000436917.1:n.424T>C
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000384444
  ensembl transcript: ENST00000405883
  gene symbol: STK25
  hgvsc: ENST00000405883.3:c.31-697T>C
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000385541
  ensembl transcript: ENST00000405585
  gene symbol: STK25
  hgvsc: ENST00000405585.1:c.31-697T>C
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000395104
  ensembl transcript: ENST00000413760
  gene symbol: STK25
  hgvsc: ENST00000413760.1:c.-37T>C
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000404960
  ensembl transcript: ENST00000429279
  gene symbol: STK25
  hgvsc: ENST00000429279.1:c.-37T>C
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000444886
  ensembl transcript: ENST00000543554
  gene symbol: STK25
  hgvsc: ENST00000543554.1:c.-37T>C
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000399212
  ensembl transcript: ENST00000450497
  gene symbol: STK25
  hgvsc: ENST00000450497.1:c.-318T>C
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000446008
  ensembl transcript: ENST00000535007
  gene symbol: STK25
  hgvsc: ENST00000535007.1:c.-37T>C
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000483603
  gene symbol: STK25
  hgvsc: ENST00000483603.1:n.540T>C
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000496159
  gene symbol: STK25
  hgvsc: ENST00000496159.1:n.171+35T>C
  variant of: http://identifiers.org/hgnc/11404
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Phe82Phe
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: QD

2-242440915-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 242440915
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 242440915
    reference: chr 2
allele count: 1
allele frequency: 8.376893177858196e-6
allele num: 119376
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000384162
  ensembl transcript: ENST00000403346
  gene symbol: STK25
  hgvsc: ENST00000403346.3:c.239G>A
  hgvsp: ENSP00000384162.3:p.Arg80His
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000417020
  ensembl transcript: ENST00000424537
  gene symbol: STK25
  hgvsc: ENST00000424537.1:c.31-1219G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000496159
  gene symbol: STK25
  hgvsc: ENST00000496159.1:n.171+28G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000492127
  gene symbol: STK25
  hgvsc: ENST00000492127.1:n.199G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000414191
  ensembl transcript: ENST00000426941
  gene symbol: STK25
  hgvsc: ENST00000426941.1:c.239G>A
  hgvsp: ENSP00000414191.1:p.Arg80His
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000404960
  ensembl transcript: ENST00000429279
  gene symbol: STK25
  hgvsc: ENST00000429279.1:c.-44G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000325748
  ensembl transcript: ENST00000316586
  gene symbol: STK25
  hgvsc: ENST00000316586.4:c.239G>A
  hgvsp: ENSP00000325748.4:p.Arg80His
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000403866
  ensembl transcript: ENST00000440109
  gene symbol: STK25
  hgvsc: ENST00000440109.1:c.-44G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000495372
  gene symbol: STK25
  hgvsc: ENST00000495372.1:n.418G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000412617
  ensembl transcript: ENST00000436402
  gene symbol: STK25
  hgvsc: ENST00000436402.1:c.239G>A
  hgvsp: ENSP00000412617.1:p.Arg80His
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000483603
  gene symbol: STK25
  hgvsc: ENST00000483603.1:n.533G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000403607
  ensembl transcript: ENST00000442307
  gene symbol: STK25
  hgvsc: ENST00000442307.1:c.-44G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000444886
  ensembl transcript: ENST00000543554
  gene symbol: STK25
  hgvsc: ENST00000543554.1:c.-44G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000395104
  ensembl transcript: ENST00000413760
  gene symbol: STK25
  hgvsc: ENST00000413760.1:c.-44G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000401114
  ensembl transcript: ENST00000435225
  gene symbol: STK25
  hgvsc: ENST00000435225.1:c.-44G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000399212
  ensembl transcript: ENST00000450497
  gene symbol: STK25
  hgvsc: ENST00000450497.1:c.-325G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000385687
  ensembl transcript: ENST00000401869
  gene symbol: STK25
  hgvsc: ENST00000401869.1:c.239G>A
  hgvsp: ENSP00000385687.1:p.Arg80His
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000452891
  gene symbol: STK25
  hgvsc: ENST00000452891.1:n.468G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000384444
  ensembl transcript: ENST00000405883
  gene symbol: STK25
  hgvsc: ENST00000405883.3:c.31-704G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000436917
  gene symbol: STK25
  hgvsc: ENST00000436917.1:n.417G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000385541
  ensembl transcript: ENST00000405585
  gene symbol: STK25
  hgvsc: ENST00000405585.1:c.31-704G>A
  variant of: http://identifiers.org/hgnc/11404
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Arg80His
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: African
population: South Asian
population: European (Finnish)
population: East Asian
population: Latino
reference allele: C
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: QD

2-242440916-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 242440916
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 242440916
    reference: chr 2
allele count: 1
allele frequency: 8.369601606963508e-6
allele num: 119480
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000412617
  ensembl transcript: ENST00000436402
  gene symbol: STK25
  hgvsc: ENST00000436402.1:c.238C>T
  hgvsp: ENSP00000412617.1:p.Arg80Cys
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000384162
  ensembl transcript: ENST00000403346
  gene symbol: STK25
  hgvsc: ENST00000403346.3:c.238C>T
  hgvsp: ENSP00000384162.3:p.Arg80Cys
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000436917
  gene symbol: STK25
  hgvsc: ENST00000436917.1:n.416C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000325748
  ensembl transcript: ENST00000316586
  gene symbol: STK25
  hgvsc: ENST00000316586.4:c.238C>T
  hgvsp: ENSP00000325748.4:p.Arg80Cys
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000496159
  gene symbol: STK25
  hgvsc: ENST00000496159.1:n.171+27C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000446008
  ensembl transcript: ENST00000535007
  gene symbol: STK25
  hgvsc: ENST00000535007.1:c.-45C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000404960
  ensembl transcript: ENST00000429279
  gene symbol: STK25
  hgvsc: ENST00000429279.1:c.-45C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000492127
  gene symbol: STK25
  hgvsc: ENST00000492127.1:n.198C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000403866
  ensembl transcript: ENST00000440109
  gene symbol: STK25
  hgvsc: ENST00000440109.1:c.-45C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000452891
  gene symbol: STK25
  hgvsc: ENST00000452891.1:n.467C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000385687
  ensembl transcript: ENST00000401869
  gene symbol: STK25
  hgvsc: ENST00000401869.1:c.238C>T
  hgvsp: ENSP00000385687.1:p.Arg80Cys
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000483603
  gene symbol: STK25
  hgvsc: ENST00000483603.1:n.532C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000406208
  ensembl transcript: ENST00000439101
  gene symbol: STK25
  hgvsc: ENST00000439101.1:c.-96C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000401114
  ensembl transcript: ENST00000435225
  gene symbol: STK25
  hgvsc: ENST00000435225.1:c.-45C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000414191
  ensembl transcript: ENST00000426941
  gene symbol: STK25
  hgvsc: ENST00000426941.1:c.238C>T
  hgvsp: ENSP00000414191.1:p.Arg80Cys
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000417020
  ensembl transcript: ENST00000424537
  gene symbol: STK25
  hgvsc: ENST00000424537.1:c.31-1220C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000395104
  ensembl transcript: ENST00000413760
  gene symbol: STK25
  hgvsc: ENST00000413760.1:c.-45C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000403607
  ensembl transcript: ENST00000442307
  gene symbol: STK25
  hgvsc: ENST00000442307.1:c.-45C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000444886
  ensembl transcript: ENST00000543554
  gene symbol: STK25
  hgvsc: ENST00000543554.1:c.-45C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000385541
  ensembl transcript: ENST00000405585
  gene symbol: STK25
  hgvsc: ENST00000405585.1:c.31-705C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000384444
  ensembl transcript: ENST00000405883
  gene symbol: STK25
  hgvsc: ENST00000405883.3:c.31-705C>T
  variant of: http://identifiers.org/hgnc/11404
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Arg80Cys
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: East Asian
population: European (Finnish)
population: Other
population: African
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum

2-242440916-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 242440916
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 242440916
    reference: chr 2
allele count: 0
allele frequency: 0.0e0
allele num: 119480
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000446008
  ensembl transcript: ENST00000535007
  gene symbol: STK25
  hgvsc: ENST00000535007.1:c.-45C>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000385541
  ensembl transcript: ENST00000405585
  gene symbol: STK25
  hgvsc: ENST00000405585.1:c.31-705C>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000385687
  ensembl transcript: ENST00000401869
  gene symbol: STK25
  hgvsc: ENST00000401869.1:c.238C>A
  hgvsp: ENSP00000385687.1:p.Arg80Ser
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000401114
  ensembl transcript: ENST00000435225
  gene symbol: STK25
  hgvsc: ENST00000435225.1:c.-45C>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000495372
  gene symbol: STK25
  hgvsc: ENST00000495372.1:n.417C>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000483603
  gene symbol: STK25
  hgvsc: ENST00000483603.1:n.532C>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000492127
  gene symbol: STK25
  hgvsc: ENST00000492127.1:n.198C>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000496159
  gene symbol: STK25
  hgvsc: ENST00000496159.1:n.171+27C>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000403607
  ensembl transcript: ENST00000442307
  gene symbol: STK25
  hgvsc: ENST00000442307.1:c.-45C>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000452891
  gene symbol: STK25
  hgvsc: ENST00000452891.1:n.467C>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000395104
  ensembl transcript: ENST00000413760
  gene symbol: STK25
  hgvsc: ENST00000413760.1:c.-45C>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000417020
  ensembl transcript: ENST00000424537
  gene symbol: STK25
  hgvsc: ENST00000424537.1:c.31-1220C>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000399212
  ensembl transcript: ENST00000450497
  gene symbol: STK25
  hgvsc: ENST00000450497.1:c.-326C>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000404960
  ensembl transcript: ENST00000429279
  gene symbol: STK25
  hgvsc: ENST00000429279.1:c.-45C>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000436917
  gene symbol: STK25
  hgvsc: ENST00000436917.1:n.416C>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000412617
  ensembl transcript: ENST00000436402
  gene symbol: STK25
  hgvsc: ENST00000436402.1:c.238C>A
  hgvsp: ENSP00000412617.1:p.Arg80Ser
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000384444
  ensembl transcript: ENST00000405883
  gene symbol: STK25
  hgvsc: ENST00000405883.3:c.31-705C>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000461760
  gene symbol: STK25
  hgvsc: ENST00000461760.1:n.77-1220C>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000414191
  ensembl transcript: ENST00000426941
  gene symbol: STK25
  hgvsc: ENST00000426941.1:c.238C>A
  hgvsp: ENSP00000414191.1:p.Arg80Ser
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000384162
  ensembl transcript: ENST00000403346
  gene symbol: STK25
  hgvsc: ENST00000403346.3:c.238C>A
  hgvsp: ENSP00000384162.3:p.Arg80Ser
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000325748
  ensembl transcript: ENST00000316586
  gene symbol: STK25
  hgvsc: ENST00000316586.4:c.238C>A
  hgvsp: ENSP00000325748.4:p.Arg80Ser
  variant of: http://identifiers.org/hgnc/11404
canonical: true
consequence: missense
filter: AC_Adj0
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Arg80Ser
num of homozygotes: 0
population: South Asian
population: East Asian
population: Other
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD

2-242440922-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 242440922
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 242440922
    reference: chr 2
allele count: 1
allele frequency: 8.345852111500584e-6
allele num: 119820
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000403607
  ensembl transcript: ENST00000442307
  gene symbol: STK25
  hgvsc: ENST00000442307.1:c.-51A>G
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000496159
  gene symbol: STK25
  hgvsc: ENST00000496159.1:n.171+21A>G
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000452891
  gene symbol: STK25
  hgvsc: ENST00000452891.1:n.461A>G
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000414191
  ensembl transcript: ENST00000426941
  gene symbol: STK25
  hgvsc: ENST00000426941.1:c.232A>G
  hgvsp: ENSP00000414191.1:p.Ile78Val
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000399212
  ensembl transcript: ENST00000450497
  gene symbol: STK25
  hgvsc: ENST00000450497.1:c.-332A>G
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000436917
  gene symbol: STK25
  hgvsc: ENST00000436917.1:n.410A>G
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000406208
  ensembl transcript: ENST00000439101
  gene symbol: STK25
  hgvsc: ENST00000439101.1:c.-102A>G
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000495372
  gene symbol: STK25
  hgvsc: ENST00000495372.1:n.411A>G
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000385687
  ensembl transcript: ENST00000401869
  gene symbol: STK25
  hgvsc: ENST00000401869.1:c.232A>G
  hgvsp: ENSP00000385687.1:p.Ile78Val
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000444886
  ensembl transcript: ENST00000543554
  gene symbol: STK25
  hgvsc: ENST00000543554.1:c.-51A>G
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000325748
  ensembl transcript: ENST00000316586
  gene symbol: STK25
  hgvsc: ENST00000316586.4:c.232A>G
  hgvsp: ENSP00000325748.4:p.Ile78Val
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000483603
  gene symbol: STK25
  hgvsc: ENST00000483603.1:n.526A>G
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000412617
  ensembl transcript: ENST00000436402
  gene symbol: STK25
  hgvsc: ENST00000436402.1:c.232A>G
  hgvsp: ENSP00000412617.1:p.Ile78Val
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000404960
  ensembl transcript: ENST00000429279
  gene symbol: STK25
  hgvsc: ENST00000429279.1:c.-51A>G
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000401114
  ensembl transcript: ENST00000435225
  gene symbol: STK25
  hgvsc: ENST00000435225.1:c.-51A>G
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000384162
  ensembl transcript: ENST00000403346
  gene symbol: STK25
  hgvsc: ENST00000403346.3:c.232A>G
  hgvsp: ENSP00000384162.3:p.Ile78Val
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000385541
  ensembl transcript: ENST00000405585
  gene symbol: STK25
  hgvsc: ENST00000405585.1:c.31-711A>G
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000403866
  ensembl transcript: ENST00000440109
  gene symbol: STK25
  hgvsc: ENST00000440109.1:c.-51A>G
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000492127
  gene symbol: STK25
  hgvsc: ENST00000492127.1:n.192A>G
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000461760
  gene symbol: STK25
  hgvsc: ENST00000461760.1:n.77-1226A>G
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000395104
  ensembl transcript: ENST00000413760
  gene symbol: STK25
  hgvsc: ENST00000413760.1:c.-51A>G
  variant of: http://identifiers.org/hgnc/11404
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Ile78Val
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Other
reference allele: T
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: BaseQRankSum

2-242440924-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 242440924
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 242440924
    reference: chr 2
allele count: 1
allele frequency: 8.338614455822021e-6
allele num: 119924
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000395104
  ensembl transcript: ENST00000413760
  gene symbol: STK25
  hgvsc: ENST00000413760.1:c.-53A>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000404960
  ensembl transcript: ENST00000429279
  gene symbol: STK25
  hgvsc: ENST00000429279.1:c.-53A>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000417020
  ensembl transcript: ENST00000424537
  gene symbol: STK25
  hgvsc: ENST00000424537.1:c.31-1228A>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000483603
  gene symbol: STK25
  hgvsc: ENST00000483603.1:n.524A>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000444886
  ensembl transcript: ENST00000543554
  gene symbol: STK25
  hgvsc: ENST00000543554.1:c.-53A>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000436917
  gene symbol: STK25
  hgvsc: ENST00000436917.1:n.408A>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000403866
  ensembl transcript: ENST00000440109
  gene symbol: STK25
  hgvsc: ENST00000440109.1:c.-53A>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000385541
  ensembl transcript: ENST00000405585
  gene symbol: STK25
  hgvsc: ENST00000405585.1:c.31-713A>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000325748
  ensembl transcript: ENST00000316586
  gene symbol: STK25
  hgvsc: ENST00000316586.4:c.230A>T
  hgvsp: ENSP00000325748.4:p.Tyr77Phe
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000385687
  ensembl transcript: ENST00000401869
  gene symbol: STK25
  hgvsc: ENST00000401869.1:c.230A>T
  hgvsp: ENSP00000385687.1:p.Tyr77Phe
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000384162
  ensembl transcript: ENST00000403346
  gene symbol: STK25
  hgvsc: ENST00000403346.3:c.230A>T
  hgvsp: ENSP00000384162.3:p.Tyr77Phe
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000496159
  gene symbol: STK25
  hgvsc: ENST00000496159.1:n.171+19A>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000414191
  ensembl transcript: ENST00000426941
  gene symbol: STK25
  hgvsc: ENST00000426941.1:c.230A>T
  hgvsp: ENSP00000414191.1:p.Tyr77Phe
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000492127
  gene symbol: STK25
  hgvsc: ENST00000492127.1:n.190A>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000384444
  ensembl transcript: ENST00000405883
  gene symbol: STK25
  hgvsc: ENST00000405883.3:c.31-713A>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000406208
  ensembl transcript: ENST00000439101
  gene symbol: STK25
  hgvsc: ENST00000439101.1:c.-104A>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000446008
  ensembl transcript: ENST00000535007
  gene symbol: STK25
  hgvsc: ENST00000535007.1:c.-53A>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000412617
  ensembl transcript: ENST00000436402
  gene symbol: STK25
  hgvsc: ENST00000436402.1:c.230A>T
  hgvsp: ENSP00000412617.1:p.Tyr77Phe
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000399212
  ensembl transcript: ENST00000450497
  gene symbol: STK25
  hgvsc: ENST00000450497.1:c.-334A>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000461760
  gene symbol: STK25
  hgvsc: ENST00000461760.1:n.77-1228A>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000495372
  gene symbol: STK25
  hgvsc: ENST00000495372.1:n.409A>T
  variant of: http://identifiers.org/hgnc/11404
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Tyr77Phe
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: South Asian
population: Latino
reference allele: T
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD

2-242440930-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 242440930
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 242440930
    reference: chr 2
allele count: 2
allele frequency: 1.664475107774763e-5
allele num: 120158
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000399212
  ensembl transcript: ENST00000450497
  gene symbol: STK25
  hgvsc: ENST00000450497.1:c.-340G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000412617
  ensembl transcript: ENST00000436402
  gene symbol: STK25
  hgvsc: ENST00000436402.1:c.224G>A
  hgvsp: ENSP00000412617.1:p.Ser75Asn
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000401114
  ensembl transcript: ENST00000435225
  gene symbol: STK25
  hgvsc: ENST00000435225.1:c.-59G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000384162
  ensembl transcript: ENST00000403346
  gene symbol: STK25
  hgvsc: ENST00000403346.3:c.224G>A
  hgvsp: ENSP00000384162.3:p.Ser75Asn
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000492127
  gene symbol: STK25
  hgvsc: ENST00000492127.1:n.184G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000446008
  ensembl transcript: ENST00000535007
  gene symbol: STK25
  hgvsc: ENST00000535007.1:c.-59G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000325748
  ensembl transcript: ENST00000316586
  gene symbol: STK25
  hgvsc: ENST00000316586.4:c.224G>A
  hgvsp: ENSP00000325748.4:p.Ser75Asn
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000417020
  ensembl transcript: ENST00000424537
  gene symbol: STK25
  hgvsc: ENST00000424537.1:c.31-1234G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000403866
  ensembl transcript: ENST00000440109
  gene symbol: STK25
  hgvsc: ENST00000440109.1:c.-59G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000414191
  ensembl transcript: ENST00000426941
  gene symbol: STK25
  hgvsc: ENST00000426941.1:c.224G>A
  hgvsp: ENSP00000414191.1:p.Ser75Asn
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000404960
  ensembl transcript: ENST00000429279
  gene symbol: STK25
  hgvsc: ENST00000429279.1:c.-59G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000385541
  ensembl transcript: ENST00000405585
  gene symbol: STK25
  hgvsc: ENST00000405585.1:c.31-719G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000495372
  gene symbol: STK25
  hgvsc: ENST00000495372.1:n.403G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000483603
  gene symbol: STK25
  hgvsc: ENST00000483603.1:n.518G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000395104
  ensembl transcript: ENST00000413760
  gene symbol: STK25
  hgvsc: ENST00000413760.1:c.-59G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000452891
  gene symbol: STK25
  hgvsc: ENST00000452891.1:n.453G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000403607
  ensembl transcript: ENST00000442307
  gene symbol: STK25
  hgvsc: ENST00000442307.1:c.-59G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000385687
  ensembl transcript: ENST00000401869
  gene symbol: STK25
  hgvsc: ENST00000401869.1:c.224G>A
  hgvsp: ENSP00000385687.1:p.Ser75Asn
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000461760
  gene symbol: STK25
  hgvsc: ENST00000461760.1:n.77-1234G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000406208
  ensembl transcript: ENST00000439101
  gene symbol: STK25
  hgvsc: ENST00000439101.1:c.-110G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000384444
  ensembl transcript: ENST00000405883
  gene symbol: STK25
  hgvsc: ENST00000405883.3:c.31-719G>A
  variant of: http://identifiers.org/hgnc/11404
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Ser75Asn
num of homozygotes: 0
population: Other
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: DP

2-242440934-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 242440934
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 242440934
    reference: chr 2
allele count: 3
allele frequency: 2.494512073438436e-5
allele num: 120264
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000495372
  gene symbol: STK25
  hgvsc: ENST00000495372.1:n.399G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000406208
  ensembl transcript: ENST00000439101
  gene symbol: STK25
  hgvsc: ENST00000439101.1:c.-114G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000385541
  ensembl transcript: ENST00000405585
  gene symbol: STK25
  hgvsc: ENST00000405585.1:c.31-723G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000412617
  ensembl transcript: ENST00000436402
  gene symbol: STK25
  hgvsc: ENST00000436402.1:c.220G>A
  hgvsp: ENSP00000412617.1:p.Asp74Asn
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000403607
  ensembl transcript: ENST00000442307
  gene symbol: STK25
  hgvsc: ENST00000442307.1:c.-63G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000483603
  gene symbol: STK25
  hgvsc: ENST00000483603.1:n.514G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000404960
  ensembl transcript: ENST00000429279
  gene symbol: STK25
  hgvsc: ENST00000429279.1:c.-63G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000395104
  ensembl transcript: ENST00000413760
  gene symbol: STK25
  hgvsc: ENST00000413760.1:c.-63G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000436917
  gene symbol: STK25
  hgvsc: ENST00000436917.1:n.398G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000404552
  ensembl transcript: ENST00000420551
  gene symbol: STK25
  hgvsc: ENST00000420551.1:c.265G>A
  hgvsp: ENSP00000404552.1:p.Asp89Asn
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000461760
  gene symbol: STK25
  hgvsc: ENST00000461760.1:n.77-1238G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000444886
  ensembl transcript: ENST00000543554
  gene symbol: STK25
  hgvsc: ENST00000543554.1:c.-63G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000414191
  ensembl transcript: ENST00000426941
  gene symbol: STK25
  hgvsc: ENST00000426941.1:c.220G>A
  hgvsp: ENSP00000414191.1:p.Asp74Asn
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000384444
  ensembl transcript: ENST00000405883
  gene symbol: STK25
  hgvsc: ENST00000405883.3:c.31-723G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000385687
  ensembl transcript: ENST00000401869
  gene symbol: STK25
  hgvsc: ENST00000401869.1:c.220G>A
  hgvsp: ENSP00000385687.1:p.Asp74Asn
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000399212
  ensembl transcript: ENST00000450497
  gene symbol: STK25
  hgvsc: ENST00000450497.1:c.-344G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000446008
  ensembl transcript: ENST00000535007
  gene symbol: STK25
  hgvsc: ENST00000535007.1:c.-63G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000403866
  ensembl transcript: ENST00000440109
  gene symbol: STK25
  hgvsc: ENST00000440109.1:c.-63G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000452891
  gene symbol: STK25
  hgvsc: ENST00000452891.1:n.449G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000417020
  ensembl transcript: ENST00000424537
  gene symbol: STK25
  hgvsc: ENST00000424537.1:c.31-1238G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000401114
  ensembl transcript: ENST00000435225
  gene symbol: STK25
  hgvsc: ENST00000435225.1:c.-63G>A
  variant of: http://identifiers.org/hgnc/11404
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Asp74Asn
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
reference allele: C
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum

2-242440935-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 242440935
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 242440935
    reference: chr 2
allele count: 3
allele frequency: 2.493765586034913e-5
allele num: 120300
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000406208
  ensembl transcript: ENST00000439101
  gene symbol: STK25
  hgvsc: ENST00000439101.1:c.-115C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000404960
  ensembl transcript: ENST00000429279
  gene symbol: STK25
  hgvsc: ENST00000429279.1:c.-64C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000496159
  gene symbol: STK25
  hgvsc: ENST00000496159.1:n.171+8C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000444886
  ensembl transcript: ENST00000543554
  gene symbol: STK25
  hgvsc: ENST00000543554.1:c.-64C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000403866
  ensembl transcript: ENST00000440109
  gene symbol: STK25
  hgvsc: ENST00000440109.1:c.-64C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000403607
  ensembl transcript: ENST00000442307
  gene symbol: STK25
  hgvsc: ENST00000442307.1:c.-64C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000401114
  ensembl transcript: ENST00000435225
  gene symbol: STK25
  hgvsc: ENST00000435225.1:c.-64C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000412617
  ensembl transcript: ENST00000436402
  gene symbol: STK25
  hgvsc: ENST00000436402.1:c.219C>T
  hgvsp: ENST00000436402.1:c.219C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000417020
  ensembl transcript: ENST00000424537
  gene symbol: STK25
  hgvsc: ENST00000424537.1:c.31-1239C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000325748
  ensembl transcript: ENST00000316586
  gene symbol: STK25
  hgvsc: ENST00000316586.4:c.219C>T
  hgvsp: ENST00000316586.4:c.219C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000446008
  ensembl transcript: ENST00000535007
  gene symbol: STK25
  hgvsc: ENST00000535007.1:c.-64C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000404552
  ensembl transcript: ENST00000420551
  gene symbol: STK25
  hgvsc: ENST00000420551.1:c.264C>T
  hgvsp: ENST00000420551.1:c.264C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000399212
  ensembl transcript: ENST00000450497
  gene symbol: STK25
  hgvsc: ENST00000450497.1:c.-345C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000414191
  ensembl transcript: ENST00000426941
  gene symbol: STK25
  hgvsc: ENST00000426941.1:c.219C>T
  hgvsp: ENST00000426941.1:c.219C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000395104
  ensembl transcript: ENST00000413760
  gene symbol: STK25
  hgvsc: ENST00000413760.1:c.-64C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000436917
  gene symbol: STK25
  hgvsc: ENST00000436917.1:n.397C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000385541
  ensembl transcript: ENST00000405585
  gene symbol: STK25
  hgvsc: ENST00000405585.1:c.31-724C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000384444
  ensembl transcript: ENST00000405883
  gene symbol: STK25
  hgvsc: ENST00000405883.3:c.31-724C>T
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000385687
  ensembl transcript: ENST00000401869
  gene symbol: STK25
  hgvsc: ENST00000401869.1:c.219C>T
  hgvsp: ENST00000401869.1:c.219C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000384162
  ensembl transcript: ENST00000403346
  gene symbol: STK25
  hgvsc: ENST00000403346.3:c.219C>T
  hgvsp: ENST00000403346.3:c.219C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11404
canonical: false
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: n.171+8C>T
num of homozygotes: 0
population: African
population: South Asian
population: Other
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
reference allele: G
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP

2-242440936-CACTG-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 242440936
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 242440932
    reference: chr 2
allele count: 1
allele frequency: 8.310203267571925e-6
allele num: 120334
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000399212
  ensembl transcript: ENST00000450497
  gene symbol: STK25
  hgvsc: ENST00000450497.1:c.-350_-347delCAGT
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000404552
  ensembl transcript: ENST00000420551
  gene symbol: STK25
  hgvsc: ENST00000420551.1:c.259_262delCAGT
  hgvsp: ENSP00000404552.1:p.Gln87AlafsTer?
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000401114
  ensembl transcript: ENST00000435225
  gene symbol: STK25
  hgvsc: ENST00000435225.1:c.-69_-66delCAGT
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000436917
  gene symbol: STK25
  hgvsc: ENST00000436917.1:n.392_395delCAGT
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000404960
  ensembl transcript: ENST00000429279
  gene symbol: STK25
  hgvsc: ENST00000429279.1:c.-69_-66delCAGT
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000385541
  ensembl transcript: ENST00000405585
  gene symbol: STK25
  hgvsc: ENST00000405585.1:c.31-729_31-726delCAGT
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000452891
  gene symbol: STK25
  hgvsc: ENST00000452891.1:n.443_446delCAGT
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000483603
  gene symbol: STK25
  hgvsc: ENST00000483603.1:n.508_511delCAGT
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000412617
  ensembl transcript: ENST00000436402
  gene symbol: STK25
  hgvsc: ENST00000436402.1:c.214_217delCAGT
  hgvsp: ENSP00000412617.1:p.Gln72AlafsTer14
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000384162
  ensembl transcript: ENST00000403346
  gene symbol: STK25
  hgvsc: ENST00000403346.3:c.214_217delCAGT
  hgvsp: ENSP00000384162.3:p.Gln72AlafsTer14
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000461760
  gene symbol: STK25
  hgvsc: ENST00000461760.1:n.77-1244_77-1241delCAGT
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000444886
  ensembl transcript: ENST00000543554
  gene symbol: STK25
  hgvsc: ENST00000543554.1:c.-69_-66delCAGT
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000414191
  ensembl transcript: ENST00000426941
  gene symbol: STK25
  hgvsc: ENST00000426941.1:c.214_217delCAGT
  hgvsp: ENSP00000414191.1:p.Gln72AlafsTer14
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000385687
  ensembl transcript: ENST00000401869
  gene symbol: STK25
  hgvsc: ENST00000401869.1:c.214_217delCAGT
  hgvsp: ENSP00000385687.1:p.Gln72AlafsTer14
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000325748
  ensembl transcript: ENST00000316586
  gene symbol: STK25
  hgvsc: ENST00000316586.4:c.214_217delCAGT
  hgvsp: ENSP00000325748.4:p.Gln72AlafsTer14
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000446008
  ensembl transcript: ENST00000535007
  gene symbol: STK25
  hgvsc: ENST00000535007.1:c.-69_-66delCAGT
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000403607
  ensembl transcript: ENST00000442307
  gene symbol: STK25
  hgvsc: ENST00000442307.1:c.-69_-66delCAGT
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000495372
  gene symbol: STK25
  hgvsc: ENST00000495372.1:n.393_396delCAGT
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000384444
  ensembl transcript: ENST00000405883
  gene symbol: STK25
  hgvsc: ENST00000405883.3:c.31-729_31-726delCAGT
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000496159
  gene symbol: STK25
  hgvsc: ENST00000496159.1:n.171+3_171+6delCAGT
  variant of: http://identifiers.org/hgnc/11404
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Gln72AlafsTer14
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
population: South Asian
population: European (Finnish)
population: Other
reference allele: CACTG
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum

2-242440942-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 242440942
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 242440942
    reference: chr 2
allele count: 1
allele frequency: 8.300408380092301e-6
allele num: 120476
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000483603
  gene symbol: STK25
  hgvsc: ENST00000483603.1:n.506G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000444886
  ensembl transcript: ENST00000543554
  gene symbol: STK25
  hgvsc: ENST00000543554.1:c.-71G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000495372
  gene symbol: STK25
  hgvsc: ENST00000495372.1:n.391G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000403607
  ensembl transcript: ENST00000442307
  gene symbol: STK25
  hgvsc: ENST00000442307.1:c.-71G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000492127
  gene symbol: STK25
  hgvsc: ENST00000492127.1:n.172G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000404552
  ensembl transcript: ENST00000420551
  gene symbol: STK25
  hgvsc: ENST00000420551.1:c.257G>A
  hgvsp: ENSP00000404552.1:p.Ser86Asn
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000385687
  ensembl transcript: ENST00000401869
  gene symbol: STK25
  hgvsc: ENST00000401869.1:c.212G>A
  hgvsp: ENSP00000385687.1:p.Ser71Asn
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000395104
  ensembl transcript: ENST00000413760
  gene symbol: STK25
  hgvsc: ENST00000413760.1:c.-71G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000384162
  ensembl transcript: ENST00000403346
  gene symbol: STK25
  hgvsc: ENST00000403346.3:c.212G>A
  hgvsp: ENSP00000384162.3:p.Ser71Asn
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000401114
  ensembl transcript: ENST00000435225
  gene symbol: STK25
  hgvsc: ENST00000435225.1:c.-71G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000496159
  gene symbol: STK25
  hgvsc: ENST00000496159.1:n.171+1G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000412617
  ensembl transcript: ENST00000436402
  gene symbol: STK25
  hgvsc: ENST00000436402.1:c.212G>A
  hgvsp: ENSP00000412617.1:p.Ser71Asn
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000406208
  ensembl transcript: ENST00000439101
  gene symbol: STK25
  hgvsc: ENST00000439101.1:c.-122G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000325748
  ensembl transcript: ENST00000316586
  gene symbol: STK25
  hgvsc: ENST00000316586.4:c.212G>A
  hgvsp: ENSP00000325748.4:p.Ser71Asn
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000414191
  ensembl transcript: ENST00000426941
  gene symbol: STK25
  hgvsc: ENST00000426941.1:c.212G>A
  hgvsp: ENSP00000414191.1:p.Ser71Asn
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000452891
  gene symbol: STK25
  hgvsc: ENST00000452891.1:n.441G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000385541
  ensembl transcript: ENST00000405585
  gene symbol: STK25
  hgvsc: ENST00000405585.1:c.31-731G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000404960
  ensembl transcript: ENST00000429279
  gene symbol: STK25
  hgvsc: ENST00000429279.1:c.-71G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000403866
  ensembl transcript: ENST00000440109
  gene symbol: STK25
  hgvsc: ENST00000440109.1:c.-71G>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000436917
  gene symbol: STK25
  hgvsc: ENST00000436917.1:n.390G>A
  variant of: http://identifiers.org/hgnc/11404
canonical: false
consequence: splice donor
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: n.171+1G>A
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: African
population: East Asian
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ

2-242440944-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 242440944
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 242440944
    reference: chr 2
allele count: 2
allele frequency: 1.659723490066555e-5
allele num: 120502
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000385541
  ensembl transcript: ENST00000405585
  gene symbol: STK25
  hgvsc: ENST00000405585.1:c.31-733C>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000444886
  ensembl transcript: ENST00000543554
  gene symbol: STK25
  hgvsc: ENST00000543554.1:c.-73C>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000325748
  ensembl transcript: ENST00000316586
  gene symbol: STK25
  hgvsc: ENST00000316586.4:c.210C>A
  hgvsp: ENST00000316586.4:c.210C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000412617
  ensembl transcript: ENST00000436402
  gene symbol: STK25
  hgvsc: ENST00000436402.1:c.210C>A
  hgvsp: ENST00000436402.1:c.210C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000446008
  ensembl transcript: ENST00000535007
  gene symbol: STK25
  hgvsc: ENST00000535007.1:c.-73C>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000414191
  ensembl transcript: ENST00000426941
  gene symbol: STK25
  hgvsc: ENST00000426941.1:c.210C>A
  hgvsp: ENST00000426941.1:c.210C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000495372
  gene symbol: STK25
  hgvsc: ENST00000495372.1:n.389C>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000384162
  ensembl transcript: ENST00000403346
  gene symbol: STK25
  hgvsc: ENST00000403346.3:c.210C>A
  hgvsp: ENST00000403346.3:c.210C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000404552
  ensembl transcript: ENST00000420551
  gene symbol: STK25
  hgvsc: ENST00000420551.1:c.255C>A
  hgvsp: ENST00000420551.1:c.255C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000404960
  ensembl transcript: ENST00000429279
  gene symbol: STK25
  hgvsc: ENST00000429279.1:c.-73C>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000403607
  ensembl transcript: ENST00000442307
  gene symbol: STK25
  hgvsc: ENST00000442307.1:c.-73C>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000496159
  gene symbol: STK25
  hgvsc: ENST00000496159.1:n.170C>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000401114
  ensembl transcript: ENST00000435225
  gene symbol: STK25
  hgvsc: ENST00000435225.1:c.-73C>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000406208
  ensembl transcript: ENST00000439101
  gene symbol: STK25
  hgvsc: ENST00000439101.1:c.-124C>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000436917
  gene symbol: STK25
  hgvsc: ENST00000436917.1:n.388C>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000403866
  ensembl transcript: ENST00000440109
  gene symbol: STK25
  hgvsc: ENST00000440109.1:c.-73C>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000452891
  gene symbol: STK25
  hgvsc: ENST00000452891.1:n.439C>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000417020
  ensembl transcript: ENST00000424537
  gene symbol: STK25
  hgvsc: ENST00000424537.1:c.31-1248C>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115694
  ensembl protein: ENSP00000384444
  ensembl transcript: ENST00000405883
  gene symbol: STK25
  hgvsc: ENST00000405883.3:c.31-733C>A
  variant of: http://identifiers.org/hgnc/11404
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115694
  ensembl transcript: ENST00000483603
  gene symbol: STK25
  hgvsc: ENST00000483603.1:n.504C>A
  variant of: http://identifiers.org/hgnc/11404
canonical: false
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: n.170C>A
num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: G
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: BaseQRankSum

2-242440956-C-T
type: Variant
allele count: 3
allele frequency: 2.486696175461282e-5
allele num: 120642
alternate allele: T
canonical: true
consequence: synonymous
filter: PASS
hgvs: p.Glu66Glu
num of homozygotes: 0
reference allele: C

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: non_coding_transcript_exon_variant
ensembl gene: ENSG00000115694
ensembl transcript: ENST00000496159
gene symbol: STK25
hgvsc: ENST00000496159.1:n.207C>T
variant of: http://identifiers.org/hgnc/11404

GenotypeDepth
all individuals: 6
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 1957
bin: 2.25e1
variant carriers: 1

GenotypeDepth
all individuals: 1534
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 46
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3662
bin: 5.25e1
variant carriers: 2

GenotypeDepth
all individuals: 3982
bin: 9.75e1
variant carriers: 11

GenotypeDepth
all individuals: 1677
bin: 7.75e1
variant carriers: 1

GenotypeDepth
all individuals: 2824
bin: 5.75e1
variant carriers: 3

GenotypeDepth
all individuals: 8051
bin: 2.75e1
variant carriers: 1

GenotypeDepth
all individuals: 7751
bin: 3.75e1
variant carriers: 2

GenotypeDepth
all individuals: 2260
bin: 6.25e1
variant carriers: 2

GenotypeDepth
all individuals: 78
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 105
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 9364
bin: 3.25e1
variant carriers: 1

GenotypeDepth
all individuals: 6456
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 4835
bin: 4.75e1
variant carriers: 2

GenotypeDepth
all individuals: 1076
bin: 9.25e1
variant carriers: 1

GenotypeDepth
all individuals: 1980
bin: 6.75e1
variant carriers: 2

GenotypeDepth
all individuals: 1267
bin: 8.75e1
variant carriers: 3

GenotypeDepth
all individuals: 1795
bin: 7.25e1
variant carriers: 3

GenotypeQuality
all individuals: 3751
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 125
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2336
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4921
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9595
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3874
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1864
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30885
bin: 9.75e1
variant carriers: 35

GenotypeQuality
all individuals: 17
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3182
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 7.507958435942099e-5
allele num: 66596
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10392
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 2
allele frequency: 2.207505518763797e-3
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 29
allele frequency: 1.756298449612403e-3
allele num: 16512
num of homozygotes: 1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.227e0

QD
type: SiteQuality
SIO_000300: 1.236e1

VQSLOD
type: SiteQuality
SIO_000300: 4.99e0

MQ
type: SiteQuality
SIO_000300: 5.961e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.97e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.33e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.47e-1

DP
type: SiteQuality
SIO_000300: 3.018385e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.23e-2

Annotation
canonical: false
consequence: missense_variant
ensembl gene: ENSG00000115694
ensembl protein: ENSP00000385687
ensembl transcript: ENST00000401869
gene symbol: STK25
hgvsc: ENST00000401869.1:c.295G>T
hgvsp: ENSP00000385687.1:p.Gly99Cys
variant of: http://identifiers.org/hgnc/11404

GenotypeDepth
all individuals: 6462
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1534
bin: 8.25e1
variant carriers: 1

GenotypeDepth
all individuals: 1677
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3664
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 6
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 1978
bin: 6.75e1
variant carriers: 1

GenotypeDepth
all individuals: 79
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 1957
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 112
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1263
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 9363
bin: 3.25e1
variant carriers: 3

GenotypeDepth
all individuals: 8060
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2822
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 7749
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1791
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 47
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1075
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 4834
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3975
bin: 9.75e1
variant carriers: 4

GenotypeDepth
all individuals: 2258
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 131
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4929
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3880
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2341
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3751
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30865
bin: 9.75e1
variant carriers: 9

GenotypeQuality
all individuals: 1864
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9600
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3185
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10394
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 9
allele frequency: 1.351473105685197e-4
allele num: 66594
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.943e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.4e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.316e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.68e-1

QD
type: SiteQuality
SIO_000300: 1.027e1

DP
type: SiteQuality
SIO_000300: 3.016837e6

MQRankSum
type: SiteQuality
SIO_000300: 5.07e-1

FS
type: SiteQuality
SIO_000300: 5.32e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.61e0

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000115694
ensembl transcript: ENST00000461760
gene symbol: STK25
hgvsc: ENST00000461760.1:n.77-495C>T
variant of: http://identifiers.org/hgnc/11404

GenotypeDepth
all individuals: 2822
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 4835
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1936
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 8067
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 83
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 1676
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 7745
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 6462
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1533
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3972
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 126
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1793
bin: 7.25e1
variant carriers: 1

GenotypeDepth
all individuals: 2258
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 9361
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1263
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 53
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1075
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3664
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1977
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3879
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3751
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30858
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 9588
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4921
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2346
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3185
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1865
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 147
bin: 2.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10394
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056935190793458e-5
allele num: 16510
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66590
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -3.989e0

DP
type: SiteQuality
SIO_000300: 3.016304e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.971e1

FS
type: SiteQuality
SIO_000300: 2.5021e1

MQRankSum
type: SiteQuality
SIO_000300: 6.8e-1

QD
type: SiteQuality
SIO_000300: 1.109e1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.72e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.67e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.067e0

Annotation
canonical: false
consequence: 5_prime_UTR_variant
ensembl gene: ENSG00000115694
ensembl protein: ENSP00000403866
ensembl transcript: ENST00000440109
gene symbol: STK25
hgvsc: ENST00000440109.1:c.-4C>T
variant of: http://identifiers.org/hgnc/11404

GenotypeDepth
all individuals: 85
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 1075
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1676
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 6461
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 58
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1926
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3973
bin: 9.75e1
variant carriers: 1

GenotypeDepth
all individuals: 9363
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1791
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1263
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 7744
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 8063
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 5
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 3664
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1533
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2822
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2257
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 4836
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1977
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 134
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3881
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2344
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4916
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1865
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3184
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3752
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9580
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30858
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 152
bin: 2.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10392
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.501726986033939e-5
allele num: 66590
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 3.016168e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.741e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 1.03e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.45e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 2.92e-1

QD
type: SiteQuality
SIO_000300: 1.665e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.4e0

Annotation
canonical: false
consequence: 5_prime_UTR_variant
ensembl gene: ENSG00000115694
ensembl protein: ENSP00000406208
ensembl transcript: ENST00000439101
gene symbol: STK25
hgvsc: ENST00000439101.1:c.-10A>G
variant of: http://identifiers.org/hgnc/11404

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: non_coding_transcript_exon_variant
ensembl gene: ENSG00000115694
ensembl transcript: ENST00000479442
gene symbol: STK25
hgvsc: ENST00000479442.1:n.87A>G
variant of: http://identifiers.org/hgnc/11404

GenotypeDepth
all individuals: 4835
bin: 4.75e1
variant carriers: 4

GenotypeDepth
all individuals: 1775
bin: 7.25e1
variant carriers: 16

GenotypeDepth
all individuals: 7
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 153
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 8047
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 9357
bin: 3.25e1
variant carriers: 1

GenotypeDepth
all individuals: 1903
bin: 2.25e1
variant carriers: 1

GenotypeDepth
all individuals: 2811
bin: 5.75e1
variant carriers: 6

GenotypeDepth
all individuals: 4058
bin: 9.75e1
variant carriers: 215

GenotypeDepth
all individuals: 7740
bin: 3.75e1
variant carriers: 3

GenotypeDepth
all individuals: 90
bin: 7.5e0
variant carriers: 1

GenotypeDepth
all individuals: 68
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 6458
bin: 4.25e1
variant carriers: 3

GenotypeDepth
all individuals: 1543
bin: 8.25e1
variant carriers: 23

GenotypeDepth
all individuals: 3655
bin: 5.25e1
variant carriers: 2

GenotypeDepth
all individuals: 1258
bin: 8.75e1
variant carriers: 20

GenotypeDepth
all individuals: 2246
bin: 6.25e1
variant carriers: 9

GenotypeDepth
all individuals: 1964
bin: 6.75e1
variant carriers: 12

GenotypeDepth
all individuals: 1069
bin: 9.25e1
variant carriers: 19

GenotypeDepth
all individuals: 1669
bin: 7.75e1
variant carriers: 14

GenotypeQuality
all individuals: 5
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4908
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3878
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2338
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 166
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30875
bin: 9.75e1
variant carriers: 349

GenotypeQuality
all individuals: 3181
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9541
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1862
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3750
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 3.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 10
allele frequency: 1.511944360447536e-3
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 34
allele frequency: 2.939142461964039e-3
allele num: 11568
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

South Asian
type: Population
allele count: 12
allele frequency: 7.272727272727272e-4
allele num: 16500
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 280
allele frequency: 4.205340782794148e-3
allele num: 66582
num of homozygotes: 0

African
type: Population
allele count: 12
allele frequency: 1.15473441108545e-3
allele num: 10392
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.31e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.75e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.07e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.67e0

MQ
type: SiteQuality
SIO_000300: 5.971e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

QD
type: SiteQuality
SIO_000300: 1.479e1

VQSLOD
type: SiteQuality
SIO_000300: 5.85e0

DP
type: SiteQuality
SIO_000300: 3.023245e6

FS
type: SiteQuality
SIO_000300: 0.0e0

Annotation
canonical: false
consequence: 5_prime_UTR_variant
ensembl gene: ENSG00000115694
ensembl protein: ENSP00000399212
ensembl transcript: ENST00000450497
gene symbol: STK25
hgvsc: ENST00000450497.1:c.-28G>C
variant of: http://identifiers.org/hgnc/11404

Annotation
canonical: false
consequence: splice_region_variant
consequence: intron_variant
ensembl gene: ENSG00000115694
ensembl protein: ENSP00000385687
ensembl transcript: ENST00000401869
gene symbol: STK25
hgvsc: ENST00000401869.1:c.262-7G>C
variant of: http://identifiers.org/hgnc/11404

GenotypeDepth
all individuals: 170
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1245
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1056
bin: 9.25e1
variant carriers: 1

GenotypeDepth
all individuals: 1958
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3870
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 7940
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2819
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1661
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1836
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 4872
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 12
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 307
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 128
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 1776
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3686
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2244
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 9333
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 7784
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 6483
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1526
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3760
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9267
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1868
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 104
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2351
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 76
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 274
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 90
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4883
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3195
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3890
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30719
bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10386
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.156336725254394e-4
allele num: 8648
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16472
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66522
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.8e-2

FS
type: SiteQuality
SIO_000300: 1.039e0

VQSLOD
type: SiteQuality
SIO_000300: 2.47e0

DP
type: SiteQuality
SIO_000300: 2.9996e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQ
type: SiteQuality
SIO_000300: 5.975e1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.42e-1

QD
type: SiteQuality
SIO_000300: 1.315e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.647e0

MQRankSum
type: SiteQuality
SIO_000300: 1.07e-1

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000115694
ensembl transcript: ENST00000461760
gene symbol: STK25
hgvsc: ENST00000461760.1:n.77-523G>C
variant of: http://identifiers.org/hgnc/11404

Annotation
canonical: false
consequence: 5_prime_UTR_variant
ensembl gene: ENSG00000115694
ensembl protein: ENSP00000406208
ensembl transcript: ENST00000439101
gene symbol: STK25
hgvsc: ENST00000439101.1:c.-29G>C
variant of: http://identifiers.org/hgnc/11404

Annotation
canonical: true
consequence: splice_region_variant
consequence: intron_variant
ensembl gene: ENSG00000115694
ensembl protein: ENSP00000325748
ensembl transcript: ENST00000316586
gene symbol: STK25
hgvsc: ENST00000316586.4:c.262-8G>C
variant of: http://identifiers.org/hgnc/11404

GenotypeDepth
all individuals: 3685
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 6485
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 9315
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1526
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3870
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2820
bin: 5.75e1
variant carriers: 1

GenotypeDepth
all individuals: 1776
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 185
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 13
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 131
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 1661
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 7784
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 325
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1958
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1245
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1055
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 7923
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1831
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 4873
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2245
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3886
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 96
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1867
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4877
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3193
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2343
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 285
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 84
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 115
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30716
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 72
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9208
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3758
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10386
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66516
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.074596039363382e-5
allele num: 16462
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.999071e6

VQSLOD
type: SiteQuality
SIO_000300: -1.85e0

MQRankSum
type: SiteQuality
SIO_000300: 1.97e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

QD
type: SiteQuality
SIO_000300: 5.12e0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.6e-2

FS
type: SiteQuality
SIO_000300: 3.2769e1

MQ
type: SiteQuality
SIO_000300: 5.88e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.85e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.0e-2

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000115694
ensembl transcript: ENST00000461760
gene symbol: STK25
hgvsc: ENST00000461760.1:n.77-524C>T
variant of: http://identifiers.org/hgnc/11404

GenotypeDepth
all individuals: 7926
bin: 2.75e1
variant carriers: 1

GenotypeDepth
all individuals: 326
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1960
bin: 6.75e1
variant carriers: 2

GenotypeDepth
all individuals: 3871
bin: 9.75e1
variant carriers: 2

GenotypeDepth
all individuals: 2818
bin: 5.75e1
variant carriers: 1

GenotypeDepth
all individuals: 6481
bin: 4.25e1
variant carriers: 1

GenotypeDepth
all individuals: 4872
bin: 4.75e1
variant carriers: 1

GenotypeDepth
all individuals: 13
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 9314
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 186
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3685
bin: 5.25e1
variant carriers: 1

GenotypeDepth
all individuals: 7781
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1774
bin: 7.25e1
variant carriers: 2

GenotypeDepth
all individuals: 1835
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1247
bin: 8.75e1
variant carriers: 3

GenotypeDepth
all individuals: 132
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 2245
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1659
bin: 7.75e1
variant carriers: 2

GenotypeDepth
all individuals: 1527
bin: 8.25e1
variant carriers: 1

GenotypeDepth
all individuals: 1054
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3195
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 113
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9236
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 286
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3757
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3888
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1867
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30716
bin: 9.75e1
variant carriers: 17

GenotypeQuality
all individuals: 95
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2341
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 76
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4871
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 4.75e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 9.628345850182938e-5
allele num: 10386
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.647526807333103e-5
allele num: 11564
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 11
allele frequency: 1.653836901611739e-4
allele num: 66512
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 2.430133657351154e-4
allele num: 16460
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.381e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.28e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

FS
type: SiteQuality
SIO_000300: 6.63e-1

MQ
type: SiteQuality
SIO_000300: 5.962e1

MQRankSum
type: SiteQuality
SIO_000300: 2.48e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.51e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.169e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.86e-1

DP
type: SiteQuality
SIO_000300: 2.998887e6

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: non_coding_transcript_exon_variant
ensembl gene: ENSG00000115694
ensembl transcript: ENST00000452891
gene symbol: STK25
hgvsc: ENST00000452891.1:n.532C>T
variant of: http://identifiers.org/hgnc/11404

GenotypeDepth
all individuals: 1678
bin: 7.75e1
variant carriers: 1451

GenotypeDepth
all individuals: 2764
bin: 5.75e1
variant carriers: 1041

GenotypeDepth
all individuals: 340
bin: 1.25e1
variant carriers: 61

GenotypeDepth
all individuals: 1991
bin: 6.75e1
variant carriers: 1372

GenotypeDepth
all individuals: 1209
bin: 8.75e1
variant carriers: 1112

GenotypeDepth
all individuals: 9119
bin: 3.25e1
variant carriers: 362

GenotypeDepth
all individuals: 6399
bin: 4.25e1
variant carriers: 602

GenotypeDepth
all individuals: 15
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 7693
bin: 2.75e1
variant carriers: 205

GenotypeDepth
all individuals: 1633
bin: 2.25e1
variant carriers: 128

GenotypeDepth
all individuals: 199
bin: 1.75e1
variant carriers: 77

GenotypeDepth
all individuals: 1469
bin: 8.25e1
variant carriers: 1322

GenotypeDepth
all individuals: 7652
bin: 3.75e1
variant carriers: 453

GenotypeDepth
all individuals: 131
bin: 7.5e0
variant carriers: 17

GenotypeDepth
all individuals: 2238
bin: 6.25e1
variant carriers: 1225

GenotypeDepth
all individuals: 1797
bin: 7.25e1
variant carriers: 1416

GenotypeDepth
all individuals: 1056
bin: 9.25e1
variant carriers: 976

GenotypeDepth
all individuals: 3665
bin: 5.25e1
variant carriers: 883

GenotypeDepth
all individuals: 4736
bin: 4.75e1
variant carriers: 657

GenotypeDepth
all individuals: 4922
bin: 9.75e1
variant carriers: 4642

GenotypeQuality
all individuals: 3493
bin: 8.25e1
variant carriers: 16

GenotypeQuality
all individuals: 4622
bin: 6.75e1
variant carriers: 12

GenotypeQuality
all individuals: 13
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8861
bin: 6.25e1
variant carriers: 7

GenotypeQuality
all individuals: 2940
bin: 9.25e1
variant carriers: 24

GenotypeQuality
all individuals: 43
bin: 5.25e1
variant carriers: 9

GenotypeQuality
all individuals: 31
bin: 5.75e1
variant carriers: 6

GenotypeQuality
all individuals: 82
bin: 2.75e1
variant carriers: 2

GenotypeQuality
all individuals: 13
bin: 2.5e0
variant carriers: 2

GenotypeQuality
all individuals: 56
bin: 3.75e1
variant carriers: 3

GenotypeQuality
all individuals: 6
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 4.75e1
variant carriers: 4

GenotypeQuality
all individuals: 89
bin: 3.25e1
variant carriers: 5

GenotypeQuality
all individuals: 277
bin: 2.25e1
variant carriers: 2

GenotypeQuality
all individuals: 32575
bin: 9.75e1
variant carriers: 17867

GenotypeQuality
all individuals: 1719
bin: 8.75e1
variant carriers: 16

GenotypeQuality
all individuals: 10
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3630
bin: 7.75e1
variant carriers: 12

GenotypeQuality
all individuals: 32
bin: 4.25e1
variant carriers: 6

GenotypeQuality
all individuals: 2173
bin: 7.25e1
variant carriers: 8

European (Finnish)
type: Population
allele count: 1204
allele frequency: 1.822585528307599e-1
allele num: 6606
num of homozygotes: 133

East Asian
type: Population
allele count: 2
allele frequency: 2.312673450508788e-4
allele num: 8648
num of homozygotes: 0

Latino
type: Population
allele count: 1284
allele frequency: 1.110918844090673e-1
allele num: 11558
num of homozygotes: 91

African
type: Population
allele count: 2229
allele frequency: 2.145332050048123e-1
allele num: 10390
num of homozygotes: 233

South Asian
type: Population
allele count: 951
allele frequency: 5.779749604959281e-2
allele num: 16454
num of homozygotes: 41

Other
type: Population
allele count: 168
allele frequency: 1.854304635761589e-1
allele num: 906
num of homozygotes: 22

European (Non-Finnish)
type: Population
allele count: 14182
allele frequency: 2.132182698379289e-1
allele num: 66514
num of homozygotes: 1518

DP
type: SiteQuality
SIO_000300: 3.127312e6

MQRankSum
type: SiteQuality
SIO_000300: 9.8e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.71e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.43e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.33e-2

MQ
type: SiteQuality
SIO_000300: 5.967e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.478e0

VQSLOD
type: SiteQuality
SIO_000300: 5.03e0

FS
type: SiteQuality
SIO_000300: 6.25e-1

QD
type: SiteQuality
SIO_000300: 1.596e1

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000115694
ensembl protein: ENSP00000395104
ensembl transcript: ENST00000413760
gene symbol: STK25
hgvsc: ENST00000413760.1:c.-21-14G>A
variant of: http://identifiers.org/hgnc/11404

GenotypeDepth
all individuals: 28
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 546
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 10179
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 203
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 5717
bin: 4.75e1
variant carriers: 1

GenotypeDepth
all individuals: 1208
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 215
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 12583
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1941
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3824
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 330
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 234
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1323
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 822
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 10316
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 496
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2327
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 150
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 8086
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 178
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 140
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4105
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 510
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 88
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3061
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12218
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 169
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4858
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21200
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 5117
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6565
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2420
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.505570611261668e-5
allele num: 66420
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10384
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16404
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.985e0

DP
type: SiteQuality
SIO_000300: 2.462219e6

MQ
type: SiteQuality
SIO_000300: 5.905e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.89e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.187e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 8.93e-1

QD
type: SiteQuality
SIO_000300: 8.01e0

FS
type: SiteQuality
SIO_000300: 9.433e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.04e0

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000115694
ensembl protein: ENSP00000417020
ensembl transcript: ENST00000424537
gene symbol: STK25
hgvsc: ENST00000424537.1:c.31-536T>C
variant of: http://identifiers.org/hgnc/11404

GenotypeDepth
all individuals: 248
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 178
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 340
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1322
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5716
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 234
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 10146
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3824
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2327
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 821
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 34
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 1208
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 10116
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 12463
bin: 3.25e1
variant carriers: 1

GenotypeDepth
all individuals: 1857
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 330
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 150
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 496
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 8074
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 822
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3039
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2414
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 227
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 661
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11963
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4100
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 162
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6509
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 283
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21196
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 5087
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4847
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10380
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66380
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.116956202593589e-5
allele num: 16348
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.5e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 6.65e-1

MQRankSum
type: SiteQuality
SIO_000300: 9.69e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.62e0

FS
type: SiteQuality
SIO_000300: 1.2799e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 2.454955e6

QD
type: SiteQuality
SIO_000300: 1.298e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.51e-1

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000115694
ensembl transcript: ENST00000492127
gene symbol: STK25
hgvsc: ENST00000492127.1:n.222-36G>A
variant of: http://identifiers.org/hgnc/11404

GenotypeDepth
all individuals: 5687
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 9064
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 8008
bin: 4.25e1
variant carriers: 1

GenotypeDepth
all individuals: 150
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1753
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3819
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1946
bin: 2.25e1
variant carriers: 1

GenotypeDepth
all individuals: 1208
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 11450
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1322
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1610
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 327
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 61
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 233
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 9919
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 330
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 496
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 821
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2323
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 178
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 734
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 269
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 94
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21160
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 5766
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 159
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4919
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 540
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 922
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10601
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1014
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4064
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2842
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2390
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 258
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4773
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.019414837404511e-5
allele num: 66238
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10364
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16184
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.175e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.5e-2

DP
type: SiteQuality
SIO_000300: 2.41718e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.382e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 3.1e0

MQRankSum
type: SiteQuality
SIO_000300: 3.17e-1

MQ
type: SiteQuality
SIO_000300: 5.953e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.5e-1

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000115694
ensembl protein: ENSP00000384444
ensembl transcript: ENST00000405883
gene symbol: STK25
hgvsc: ENST00000405883.3:c.31-44T>C
variant of: http://identifiers.org/hgnc/11404

GenotypeDepth
all individuals: 9775
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 63
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 2323
bin: 5.75e1
variant carriers: 1

GenotypeDepth
all individuals: 3099
bin: 1.75e1
variant carriers: 1

GenotypeDepth
all individuals: 820
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2822
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1644
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 7963
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 401
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 7726
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 496
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 10660
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 233
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5676
bin: 4.75e1
variant carriers: 2

GenotypeDepth
all individuals: 330
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1208
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 150
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3815
bin: 5.25e1
variant carriers: 1

GenotypeDepth
all individuals: 1322
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 178
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 76
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1220
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1024
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21147
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 2788
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4756
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 418
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4870
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 988
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 153
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 96
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1347
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4058
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8520
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 706
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 661
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5403
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2381
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.731002250302925e-4
allele num: 11554
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.188118811881188e-5
allele num: 16160
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10360
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.022883226020979e-5
allele num: 66162
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.24e0

QD
type: SiteQuality
SIO_000300: 1.42e1

MQRankSum
type: SiteQuality
SIO_000300: -3.8e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.3e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.14e-1

DP
type: SiteQuality
SIO_000300: 2.390776e6

BaseQRankSum
type: SiteQuality
SIO_000300: 9.64e-1

MQ
type: SiteQuality
SIO_000300: 5.97e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.15e-1

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000115694
ensembl protein: ENSP00000404960
ensembl transcript: ENST00000429279
gene symbol: STK25
hgvsc: ENST00000429279.1:c.-21-48G>C
variant of: http://identifiers.org/hgnc/11404

GenotypeDepth
all individuals: 470
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 62
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 4223
bin: 2.25e1
variant carriers: 1

GenotypeDepth
all individuals: 1618
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 9629
bin: 3.75e1
variant carriers: 1

GenotypeDepth
all individuals: 3075
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 7197
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3812
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1322
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 495
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5670
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1208
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 150
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2323
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 7925
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 9964
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 820
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 178
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 330
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 233
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5108
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 910
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 156
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1746
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4820
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 953
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 668
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 97
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1267
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1168
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2376
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1528
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 133
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6847
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4728
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2716
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 254
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21139
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 4048
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6584
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.027917398413371e-5
allele num: 66052
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10348
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16010
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.27e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.377249e6

MQRankSum
type: SiteQuality
SIO_000300: -4.48e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.97e-1

VQSLOD
type: SiteQuality
SIO_000300: -4.708e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.164e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.6e-3

QD
type: SiteQuality
SIO_000300: 7.81e0

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000115694
ensembl protein: ENSP00000385687
ensembl transcript: ENST00000401869
gene symbol: STK25
hgvsc: ENST00000401869.1:c.262-49T>G
variant of: http://identifiers.org/hgnc/11404

GenotypeDepth
all individuals: 7914
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 178
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 4515
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 62
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 1627
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 477
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 9751
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5668
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 150
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 7170
bin: 2.75e1
variant carriers: 1

GenotypeDepth
all individuals: 820
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2323
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 330
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 233
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3811
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3061
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1322
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 9589
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1208
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 495
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1527
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1907
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 919
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4048
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 170
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1284
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 321
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1546
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2374
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 938
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 111
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4818
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5084
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6264
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 674
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21137
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2725
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4727
bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16054
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.518833535844471e-4
allele num: 6584
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10350
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66056
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11538
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.209e1

VQSLOD
type: SiteQuality
SIO_000300: 6.24e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.917e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.99e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.06e0

MQRankSum
type: SiteQuality
SIO_000300: 8.29e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.244e0

DP
type: SiteQuality
SIO_000300: 2.374071e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.9e-3

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000115694
ensembl protein: ENSP00000401114
ensembl transcript: ENST00000435225
gene symbol: STK25
hgvsc: ENST00000435225.1:c.-21-50A>C
variant of: http://identifiers.org/hgnc/11404

GenotypeDepth
all individuals: 1322
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 329
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3054
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 9466
bin: 3.75e1
variant carriers: 3

GenotypeDepth
all individuals: 495
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 7894
bin: 4.25e1
variant carriers: 1

GenotypeDepth
all individuals: 1611
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 233
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 4953
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 505
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 7296
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3808
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2321
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 63
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 150
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 9340
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1208
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 178
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 820
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 5658
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 93
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 281
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2374
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 983
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1429
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2475
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21138
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 4608
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1295
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1574
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4566
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 677
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2035
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 114
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4722
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2670
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4778
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 811
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4047
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.255473539346929e-5
allele num: 15986
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6574
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.063178318074334e-5
allele num: 65972
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10352
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11532
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.79e-1

QD
type: SiteQuality
SIO_000300: 1.295e1

FS
type: SiteQuality
SIO_000300: 8.087999999999999e0

MQRankSum
type: SiteQuality
SIO_000300: -3.7e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 3.94e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.19e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.68e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.6e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 2.367753e6

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000115694
ensembl protein: ENSP00000384444
ensembl transcript: ENST00000405883
gene symbol: STK25
hgvsc: ENST00000405883.3:c.31-52G>A
variant of: http://identifiers.org/hgnc/11404

GenotypeDepth
all individuals: 233
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 9279
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3809
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 495
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1627
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 820
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 7893
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 178
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1321
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 4970
bin: 2.25e1
variant carriers: 1

GenotypeDepth
all individuals: 9427
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1208
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 64
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 3048
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 5653
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2320
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 150
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 7378
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 502
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 329
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2070
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21133
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 68
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1006
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 808
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1560
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2422
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 283
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2649
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 665
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2371
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1113
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 129
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 114
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1288
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4938
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4562
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4712
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4772
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4041
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11526
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10344
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6570
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.517312536036173e-5
allele num: 65906
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.75e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.27e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.82e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.3e-3

QD
type: SiteQuality
SIO_000300: 1.752e1

DP
type: SiteQuality
SIO_000300: 2.366696e6

MQ
type: SiteQuality
SIO_000300: 5.895e1

MQRankSum
type: SiteQuality
SIO_000300: 3.52e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.201e0

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000115694
ensembl protein: ENSP00000384162
ensembl transcript: ENST00000403346
gene symbol: STK25
hgvsc: ENST00000403346.3:c.261+125G>C
variant of: http://identifiers.org/hgnc/11404

GenotypeDepth
all individuals: 4387
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 228
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 8
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1589
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 8
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1426
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 34399
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 12187
bin: 7.5e0
variant carriers: 1

GenotypeDepth
all individuals: 40
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 581
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 78
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 125
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 187
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3452
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5253
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1416
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 468
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5292
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 99
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1768
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25983
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7170
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 523
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1429
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 319
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 101
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1171
bin: 3.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 390
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 628
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5098
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6746
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1838
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 196
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1512
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -1.498e0

BaseQRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -5.5e-1

DP
type: SiteQuality
SIO_000300: 3.05724e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.2e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.25e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.5e-1

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000115694
ensembl protein: ENSP00000444886
ensembl transcript: ENST00000543554
gene symbol: STK25
hgvsc: ENST00000543554.1:c.-22+123G>A
variant of: http://identifiers.org/hgnc/11404

GenotypeDepth
all individuals: 34387
bin: 2.5e0
variant carriers: 1

GenotypeDepth
all individuals: 0
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 12397
bin: 7.5e0
variant carriers: 3

GenotypeDepth
all individuals: 1
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 5
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 596
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1477
bin: 1.75e1
variant carriers: 1

GenotypeDepth
all individuals: 8
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 40
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 4341
bin: 1.25e1
variant carriers: 2

GenotypeDepth
all individuals: 8
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 233
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1619
bin: 2.25e1
variant carriers: 1

GenotypeDepth
all individuals: 0
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 79
bin: 3.75e1
variant carriers: 1

GenotypeDepth
all individuals: 0
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1566
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1119
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 106
bin: 9.75e1
variant carriers: 6

GenotypeQuality
all individuals: 3158
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5051
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 442
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26766
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 330
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 61
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4752
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 473
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1746
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7680
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 101
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1419
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 163
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 126
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 392
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1826
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1514
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.476232654266312e-4
allele num: 6774
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 4.73186119873817e-3
allele num: 634
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 192
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.975503753457131e-4
allele num: 5062
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.28e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -4.21e-1

QD
type: SiteQuality
SIO_000300: 1.253e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.58e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.13e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -5.29e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.21e-1

FS
type: SiteQuality
SIO_000300: 2.739e0

DP
type: SiteQuality
SIO_000300: 3.10477e5

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000115694
ensembl protein: ENSP00000384444
ensembl transcript: ENST00000405883
gene symbol: STK25
hgvsc: ENST00000405883.3:c.31-568A>C
variant of: http://identifiers.org/hgnc/11404

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000115694
ensembl protein: ENSP00000385687
ensembl transcript: ENST00000401869
gene symbol: STK25
hgvsc: ENST00000401869.1:c.261+114A>C
variant of: http://identifiers.org/hgnc/11404

GenotypeDepth
all individuals: 0
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 922
bin: 1.75e1
variant carriers: 1

GenotypeDepth
all individuals: 0
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 904
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 14467
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 33060
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 40
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 273
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 8
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 81
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3856
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 8
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2814
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 5
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 816
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 280
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 127
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11120
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 88
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 431
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28366
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1370
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3879
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 140
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2093
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2629
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 118
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 282
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2946
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1508
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 101
bin: 9.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7304
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.54320987654321e-3
allele num: 648
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1552
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 414
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5518
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1968
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 214
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.815e0

MQRankSum
type: SiteQuality
SIO_000300: -1.61e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.84e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.11e0

QD
type: SiteQuality
SIO_000300: 1.627e1

VQSLOD
type: SiteQuality
SIO_000300: -1.997e0

DP
type: SiteQuality
SIO_000300: 3.44382e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.71e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.03e0

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000115694
ensembl transcript: ENST00000483603
gene symbol: STK25
hgvsc: ENST00000483603.1:n.555+111T>C
variant of: http://identifiers.org/hgnc/11404

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000115694
ensembl protein: ENSP00000404960
ensembl transcript: ENST00000429279
gene symbol: STK25
hgvsc: ENST00000429279.1:c.-22+111T>C
variant of: http://identifiers.org/hgnc/11404

GenotypeDepth
all individuals: 0
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 39
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 813
bin: 1.75e1
variant carriers: 1

GenotypeDepth
all individuals: 2
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3243
bin: 2.25e1
variant carriers: 2

GenotypeDepth
all individuals: 9
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 32306
bin: 2.5e0
variant carriers: 1

GenotypeDepth
all individuals: 1
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 82
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3658
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1012
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 282
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 15380
bin: 7.5e0
variant carriers: 1

GenotypeDepth
all individuals: 0
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 8
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 744
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2242
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1396
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28280
bin: 7.5e0
variant carriers: 1

GenotypeQuality
all individuals: 3446
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3576
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 241
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 128
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 247
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 117
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12245
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1915
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1311
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 74
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 476
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 103
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 149
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2014
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1572
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 424
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.758087201125176e-4
allele num: 5688
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7526
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 226
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 3.067484662576687e-3
allele num: 652
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.031e1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.46e-1

FS
type: SiteQuality
SIO_000300: 1.282e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.679e0

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.49e-2

DP
type: SiteQuality
SIO_000300: 3.57624e5

VQSLOD
type: SiteQuality
SIO_000300: 1.23e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000115694
ensembl transcript: ENST00000496159
gene symbol: STK25
hgvsc: ENST00000496159.1:n.171+153C>T
variant of: http://identifiers.org/hgnc/11404

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000115694
ensembl protein: ENSP00000406208
ensembl transcript: ENST00000439101
gene symbol: STK25
hgvsc: ENST00000439101.1:c.-73+103C>T
variant of: http://identifiers.org/hgnc/11404

GenotypeDepth
all individuals: 84
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 663
bin: 1.75e1
variant carriers: 2

GenotypeDepth
all individuals: 4350
bin: 2.25e1
variant carriers: 2

GenotypeDepth
all individuals: 3139
bin: 1.25e1
variant carriers: 2

GenotypeDepth
all individuals: 5
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 8
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1369
bin: 2.75e1
variant carriers: 1

GenotypeDepth
all individuals: 323
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 29532
bin: 2.5e0
variant carriers: 2

GenotypeDepth
all individuals: 0
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 18403
bin: 7.5e0
variant carriers: 6

GenotypeDepth
all individuals: 2
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 38
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 6.25e1
variant carriers: 1

GenotypeDepth
all individuals: 0
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 9
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1131
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1849
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1183
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15235
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 4738
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 110
bin: 9.75e1
variant carriers: 10

GenotypeQuality
all individuals: 575
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2794
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 79
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1858
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26867
bin: 7.5e0
variant carriers: 1

GenotypeQuality
all individuals: 134
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 554
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 161
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 207
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 148
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 181
bin: 4.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.449779519843214e-4
allele num: 8164
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2142
num of homozygotes: 0

South Asian
type: Population
allele count: 6
allele frequency: 9.699321047526673e-4
allele num: 6186
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 456
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1636
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 698
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 226
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 1.735e0

VQSLOD
type: SiteQuality
SIO_000300: -8.843e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.52e0

DP
type: SiteQuality
SIO_000300: 3.99619e5

QD
type: SiteQuality
SIO_000300: 1.169e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.23e-2

MQRankSum
type: SiteQuality
SIO_000300: -4.91e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.44e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.52e-1

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000115694
ensembl transcript: ENST00000496159
gene symbol: STK25
hgvsc: ENST00000496159.1:n.171+145G>A
variant of: http://identifiers.org/hgnc/11404

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000115694
ensembl protein: ENSP00000444886
ensembl transcript: ENST00000543554
gene symbol: STK25
hgvsc: ENST00000543554.1:c.-22+95G>A
variant of: http://identifiers.org/hgnc/11404

GenotypeDepth
all individuals: 1
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 39
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 25087
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 2922
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 521
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 5
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 10
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 8
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 5371
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 22724
bin: 7.5e0
variant carriers: 2

GenotypeDepth
all individuals: 90
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1779
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 388
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2311
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2161
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 121
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 665
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5924
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1350
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 173
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 187
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 102
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 191
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 175
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 452
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 968
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1108
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23488
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 19223
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 174
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 88
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 528
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6906
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 764
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2356
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1728
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9216
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 250
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.55e-2

VQSLOD
type: SiteQuality
SIO_000300: 2.78e-1

DP
type: SiteQuality
SIO_000300: 4.50745e5

BaseQRankSum
type: SiteQuality
SIO_000300: 3.22e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.151e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -3.61e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.22e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.61e-1

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000115694
ensembl protein: ENSP00000401114
ensembl transcript: ENST00000435225
gene symbol: STK25
hgvsc: ENST00000435225.1:c.-22+94C>T
variant of: http://identifiers.org/hgnc/11404

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000115694
ensembl protein: ENSP00000384162
ensembl transcript: ENST00000403346
gene symbol: STK25
hgvsc: ENST00000403346.3:c.261+94C>T
variant of: http://identifiers.org/hgnc/11404

GenotypeDepth
all individuals: 5649
bin: 2.25e1
variant carriers: 1

GenotypeDepth
all individuals: 0
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 10
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 24050
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 5
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1845
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 90
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 23668
bin: 7.5e0
variant carriers: 2

GenotypeDepth
all individuals: 1
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2883
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 38
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 401
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 492
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 8
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1110
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1999
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 123
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1909
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 198
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6421
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1109
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 158
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20694
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 183
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 142
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 942
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 706
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22702
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 103
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 48
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 94
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 410
bin: 3.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1760
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2400
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 564
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 248
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.408847562693716e-4
allele num: 7098
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 788
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9534
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 3.92e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.49e-2

MQRankSum
type: SiteQuality
SIO_000300: 3.91e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.35e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.5e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.23e-1

DP
type: SiteQuality
SIO_000300: 4.62484e5

QD
type: SiteQuality
SIO_000300: 8.31e0

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000115694
ensembl transcript: ENST00000452891
gene symbol: STK25
hgvsc: ENST00000452891.1:n.490+93delG
variant of: http://identifiers.org/hgnc/11404

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000115694
ensembl protein: ENSP00000446008
ensembl transcript: ENST00000535007
gene symbol: STK25
hgvsc: ENST00000535007.1:c.-22+93delG
variant of: http://identifiers.org/hgnc/11404

GenotypeDepth
all individuals: 1
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 23668
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 24050
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 5
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 401
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1845
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 10
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 90
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2883
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 5649
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 38
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 492
bin: 1.75e1
variant carriers: 1

GenotypeDepth
all individuals: 8
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20694
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1109
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 142
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 183
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22702
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1999
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 103
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1909
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 942
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 158
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6421
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 123
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1110
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 410
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 94
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 706
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 198
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1760
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9534
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 564
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 248
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 788
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2400
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.408847562693716e-4
allele num: 7098
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.92e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.5e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.23e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.35e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 8.31e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.49e-2

MQRankSum
type: SiteQuality
SIO_000300: 3.91e-1

DP
type: SiteQuality
SIO_000300: 4.62484e5

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000115694
ensembl protein: ENSP00000395104
ensembl transcript: ENST00000413760
gene symbol: STK25
hgvsc: ENST00000413760.1:c.-22+91A>G
variant of: http://identifiers.org/hgnc/11404

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000115694
ensembl protein: ENSP00000417020
ensembl transcript: ENST00000424537
gene symbol: STK25
hgvsc: ENST00000424537.1:c.31-1106A>G
variant of: http://identifiers.org/hgnc/11404

GenotypeDepth
all individuals: 5952
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 25369
bin: 7.5e0
variant carriers: 1

GenotypeDepth
all individuals: 9
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2866
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 22224
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 414
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 8
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 92
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1983
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 479
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 40
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 192
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1148
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 930
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 152
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 97
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 832
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 147
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1873
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 206
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2409
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21049
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 752
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 392
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 178
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 97
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6727
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 101
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22073
bin: 2.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7380
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9980
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1822
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 258
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 836
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2484
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 596
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.99e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 1.98e-1

DP
type: SiteQuality
SIO_000300: 4.81241e5

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.22e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.5e0

VQSLOD
type: SiteQuality
SIO_000300: 1.82e0

QD
type: SiteQuality
SIO_000300: 1.779e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.22e-1

Annotation
canonical: true
consequence: intron_variant
ensembl gene: ENSG00000115694
ensembl protein: ENSP00000325748
ensembl transcript: ENST00000316586
gene symbol: STK25
hgvsc: ENST00000316586.4:c.261+79C>A
variant of: http://identifiers.org/hgnc/11404

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000115694
ensembl protein: ENSP00000399212
ensembl transcript: ENST00000450497
gene symbol: STK25
hgvsc: ENST00000450497.1:c.-303+79C>A
variant of: http://identifiers.org/hgnc/11404

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000115694
ensembl protein: ENSP00000412617
ensembl transcript: ENST00000436402
gene symbol: STK25
hgvsc: ENST00000436402.1:c.261+79C>A
variant of: http://identifiers.org/hgnc/11404

GenotypeDepth
all individuals: 0
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 15329
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 6897
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 9
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3309
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 41
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 99
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 546
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 8
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 30877
bin: 7.5e0
variant carriers: 4

GenotypeDepth
all individuals: 2491
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 5
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 494
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 618
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 99
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28263
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 48
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1304
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 455
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2002
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 71
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 906
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8149
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 171
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14751
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 219
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1102
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 172
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 221
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1294
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 105
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 110
bin: 5.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12162
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2868
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 294
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1054
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8142
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 784
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1978
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.187e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.89e-2

DP
type: SiteQuality
SIO_000300: 5.48596e5

MQRankSum
type: SiteQuality
SIO_000300: 4.06e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.219e0

VQSLOD
type: SiteQuality
SIO_000300: 7.15e-1

FS
type: SiteQuality
SIO_000300: 3.063e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.61e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.06e-1

Annotation
canonical: true
consequence: intron_variant
ensembl gene: ENSG00000115694
ensembl protein: ENSP00000325748
ensembl transcript: ENST00000316586
gene symbol: STK25
hgvsc: ENST00000316586.4:c.261+75C>T
variant of: http://identifiers.org/hgnc/11404

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000115694
ensembl transcript: ENST00000436917
gene symbol: STK25
hgvsc: ENST00000436917.1:n.439+75C>T
variant of: http://identifiers.org/hgnc/11404

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000115694
ensembl protein: ENSP00000412617
ensembl transcript: ENST00000436402
gene symbol: STK25
hgvsc: ENST00000436402.1:c.261+75C>T
variant of: http://identifiers.org/hgnc/11404

GenotypeDepth
all individuals: 566
bin: 1.75e1
variant carriers: 2

GenotypeDepth
all individuals: 5
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3629
bin: 1.25e1
variant carriers: 2

GenotypeDepth
all individuals: 40
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 8
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2634
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 7263
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 100
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 13103
bin: 2.5e0
variant carriers: 1

GenotypeDepth
all individuals: 2
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 32394
bin: 7.5e0
variant carriers: 1

GenotypeDepth
all individuals: 1
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 10
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 518
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 112
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 230
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 106
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 185
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 520
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1404
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 502
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 12684
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 224
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1134
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2137
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29757
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 159
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8563
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 106
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1251
bin: 3.25e1
variant carriers: 1

GenotypeQuality
all individuals: 162
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 942
bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1152
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 3.018867924528302e-4
allele num: 13250
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3006
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8352
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2078
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 308
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 5.71291e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.59e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.3e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.28e-1

QD
type: SiteQuality
SIO_000300: 1.541e1

VQSLOD
type: SiteQuality
SIO_000300: -3.148e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.931e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.2e-1

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000115694
ensembl protein: ENSP00000412617
ensembl transcript: ENST00000436402
gene symbol: STK25
hgvsc: ENST00000436402.1:c.261+71G>A
variant of: http://identifiers.org/hgnc/11404

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000115694
ensembl protein: ENSP00000401114
ensembl transcript: ENST00000435225
gene symbol: STK25
hgvsc: ENST00000435225.1:c.-22+71G>A
variant of: http://identifiers.org/hgnc/11404

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000115694
ensembl protein: ENSP00000406208
ensembl transcript: ENST00000439101
gene symbol: STK25
hgvsc: ENST00000439101.1:c.-73+71G>A
variant of: http://identifiers.org/hgnc/11404

GenotypeDepth
all individuals: 1
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 550
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 101
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 10978
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 624
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 5
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 43
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 4018
bin: 1.25e1
variant carriers: 1

GenotypeDepth
all individuals: 0
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 10
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 33660
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 7622
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2755
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 8
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10669
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 235
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 973
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1533
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 429
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 109
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30971
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 205
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2318
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1406
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8892
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 237
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1038
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 197
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 213
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 581
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 105
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 174
bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14430
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8526
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2202
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 7.886435331230284e-4
allele num: 1268
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1000
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3154
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 330
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.021e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.024e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.26e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.86e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.04e-1

DP
type: SiteQuality
SIO_000300: 5.9363e5

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.22e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.53e-1

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000115694
ensembl transcript: ENST00000452891
gene symbol: STK25
hgvsc: ENST00000452891.1:n.490+57G>A
variant of: http://identifiers.org/hgnc/11404

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000115694
ensembl transcript: ENST00000496159
gene symbol: STK25
hgvsc: ENST00000496159.1:n.171+107G>A
variant of: http://identifiers.org/hgnc/11404

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000115694
ensembl protein: ENSP00000395104
ensembl transcript: ENST00000413760
gene symbol: STK25
hgvsc: ENST00000413760.1:c.-22+57G>A
variant of: http://identifiers.org/hgnc/11404

GenotypeDepth
all individuals: 5199
bin: 1.25e1
variant carriers: 1

GenotypeDepth
all individuals: 617
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 10000
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 102
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 43
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1070
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 5
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 8
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 35186
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 5225
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 10
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3128
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1872
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 254
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1129
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 372
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1929
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 631
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 333
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 106
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 297
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 271
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5135
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 914
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 175
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1134
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34111
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11476
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 115
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 248
bin: 5.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 5.033219247030401e-5
allele num: 19868
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1670
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 380
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3880
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2690
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9232
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1896
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -3.218e0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.447e0

DP
type: SiteQuality
SIO_000300: 6.77203e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 4.18e0

MQRankSum
type: SiteQuality
SIO_000300: 3.65e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.31e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 1.57e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.568e0

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000115694
ensembl protein: ENSP00000406208
ensembl transcript: ENST00000439101
gene symbol: STK25
hgvsc: ENST00000439101.1:c.-73+55A>G
variant of: http://identifiers.org/hgnc/11404

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000115694
ensembl transcript: ENST00000436917
gene symbol: STK25
hgvsc: ENST00000436917.1:n.439+55A>G
variant of: http://identifiers.org/hgnc/11404

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000115694
ensembl protein: ENSP00000417020
ensembl transcript: ENST00000424537
gene symbol: STK25
hgvsc: ENST00000424537.1:c.31-1142A>G
variant of: http://identifiers.org/hgnc/11404

GenotypeDepth
all individuals: 607
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 35142
bin: 7.5e0
variant carriers: 3

GenotypeDepth
all individuals: 8
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 11
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 5
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3178
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 102
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 43
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 4638
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 5269
bin: 1.25e1
variant carriers: 5

GenotypeDepth
all individuals: 0
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3
bin: 7.75e1
variant carriers: 1

GenotypeDepth
all individuals: 10492
bin: 2.25e1
variant carriers: 1

GenotypeDepth
all individuals: 2
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1116
bin: 1.75e1
variant carriers: 2

GenotypeQuality
all individuals: 554
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 362
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 118
bin: 9.75e1
variant carriers: 11

GenotypeQuality
all individuals: 1195
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34120
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 315
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 297
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11875
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4570
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 286
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1926
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 959
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 189
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 232
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 118
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 259
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1159
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1988
bin: 3.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1780
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 20792
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9344
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4000
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 388
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2782
num of homozygotes: 0

East Asian
type: Population
allele count: 9
allele frequency: 4.477611940298508e-3
allele num: 2010
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.49e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.93e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.97e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.33e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.2e-2

QD
type: SiteQuality
SIO_000300: 1.236e1

DP
type: SiteQuality
SIO_000300: 6.88865e5

BaseQRankSum
type: SiteQuality
SIO_000300: 1.87e0

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000115694
ensembl protein: ENSP00000406208
ensembl transcript: ENST00000439101
gene symbol: STK25
hgvsc: ENST00000439101.1:c.-73+54C>T
variant of: http://identifiers.org/hgnc/11404

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000115694
ensembl transcript: ENST00000483603
gene symbol: STK25
hgvsc: ENST00000483603.1:n.555+54C>T
variant of: http://identifiers.org/hgnc/11404

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000115694
ensembl transcript: ENST00000496159
gene symbol: STK25
hgvsc: ENST00000496159.1:n.171+104C>T
variant of: http://identifiers.org/hgnc/11404

GenotypeDepth
all individuals: 11
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 102
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 10685
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5356
bin: 1.25e1
variant carriers: 1

GenotypeDepth
all individuals: 0
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 42
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 35018
bin: 7.5e0
variant carriers: 1

GenotypeDepth
all individuals: 4371
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 1176
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3224
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 8
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 620
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 264
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1221
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4351
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 552
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 379
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 193
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 973
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1994
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 109
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 121
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1916
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1170
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 312
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 319
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 12057
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34000
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 314
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 284
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 21144
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2036
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 384
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 2.467917077986179e-4
allele num: 4052
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1828
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9382
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2800
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 5.5e-1

VQSLOD
type: SiteQuality
SIO_000300: -8.444e-1

QD
type: SiteQuality
SIO_000300: 6.23e0

FS
type: SiteQuality
SIO_000300: 3.757e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.754e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.5e-1

DP
type: SiteQuality
SIO_000300: 6.95078e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.17e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.13e0

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000115694
ensembl transcript: ENST00000461760
gene symbol: STK25
hgvsc: ENST00000461760.1:n.77-1147C>A
variant of: http://identifiers.org/hgnc/11404

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000115694
ensembl transcript: ENST00000496159
gene symbol: STK25
hgvsc: ENST00000496159.1:n.171+100C>A
variant of: http://identifiers.org/hgnc/11404

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000115694
ensembl transcript: ENST00000436917
gene symbol: STK25
hgvsc: ENST00000436917.1:n.439+50C>A
variant of: http://identifiers.org/hgnc/11404

GenotypeDepth
all individuals: 1343
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 9
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 34460
bin: 7.5e0
variant carriers: 1

GenotypeDepth
all individuals: 3508
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 5
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 102
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 42
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 11586
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 10
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3335
bin: 2.75e1
variant carriers: 1

GenotypeDepth
all individuals: 0
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 632
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5604
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 357
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 232
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 121
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 278
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2094
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 497
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 407
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1966
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1076
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1223
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 108
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 285
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 12886
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33697
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3515
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1086
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 295
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 424
bin: 4.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2954
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 420
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4296
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2094
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 4.359958144401814e-5
allele num: 22936
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9590
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2238
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 7.17709e5

MQRankSum
type: SiteQuality
SIO_000300: 2.44e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.31e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.02e-2

QD
type: SiteQuality
SIO_000300: 1.645e1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.31e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.87e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.31e-1

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000115694
ensembl protein: ENSP00000401114
ensembl transcript: ENST00000435225
gene symbol: STK25
hgvsc: ENST00000435225.1:c.-22+45G>T
variant of: http://identifiers.org/hgnc/11404

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000115694
ensembl transcript: ENST00000461760
gene symbol: STK25
hgvsc: ENST00000461760.1:n.77-1152G>T
variant of: http://identifiers.org/hgnc/11404

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000115694
ensembl transcript: ENST00000496159
gene symbol: STK25
hgvsc: ENST00000496159.1:n.171+95G>T
variant of: http://identifiers.org/hgnc/11404

GenotypeDepth
all individuals: 103
bin: 3.75e1
variant carriers: 1

GenotypeDepth
all individuals: 12
bin: 5.25e1
variant carriers: 1

GenotypeDepth
all individuals: 1
bin: 9.75e1
variant carriers: 1

GenotypeDepth
all individuals: 5967
bin: 1.25e1
variant carriers: 21

GenotypeDepth
all individuals: 2
bin: 7.25e1
variant carriers: 1

GenotypeDepth
all individuals: 47
bin: 4.25e1
variant carriers: 1

GenotypeDepth
all individuals: 3552
bin: 2.75e1
variant carriers: 1

GenotypeDepth
all individuals: 0
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1661
bin: 1.75e1
variant carriers: 13

GenotypeDepth
all individuals: 0
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 33140
bin: 7.5e0
variant carriers: 7

GenotypeDepth
all individuals: 2507
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 3
bin: 8.75e1
variant carriers: 1

GenotypeDepth
all individuals: 2
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 685
bin: 3.25e1
variant carriers: 1

GenotypeDepth
all individuals: 2
bin: 6.25e1
variant carriers: 2

GenotypeDepth
all individuals: 12950
bin: 2.25e1
variant carriers: 7

GenotypeDepth
all individuals: 11
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 4
bin: 6.75e1
variant carriers: 2

GenotypeDepth
all individuals: 6
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 53
bin: 8.75e1
variant carriers: 3

GenotypeQuality
all individuals: 133
bin: 8.25e1
variant carriers: 4

GenotypeQuality
all individuals: 539
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 288
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1057
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2029
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 310
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 480
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1184
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2151
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 280
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 475
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1287
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 415
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32576
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2617
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 156
bin: 9.75e1
variant carriers: 51

GenotypeQuality
all individuals: 487
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14090
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2450
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 450
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9832
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 25422
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3168
num of homozygotes: 0

African
type: Population
allele count: 54
allele frequency: 1.172383847155884e-2
allele num: 4606
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2518
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.3e0

QD
type: SiteQuality
SIO_000300: 1.509e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.2e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.74e-1

DP
type: SiteQuality
SIO_000300: 7.53706e5

MQRankSum
type: SiteQuality
SIO_000300: 4.58e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.754e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.12e-1

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000115694
ensembl transcript: ENST00000496159
gene symbol: STK25
hgvsc: ENST00000496159.1:n.171+94G>A
variant of: http://identifiers.org/hgnc/11404

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000115694
ensembl protein: ENSP00000399212
ensembl transcript: ENST00000450497
gene symbol: STK25
hgvsc: ENST00000450497.1:c.-303+44G>A
variant of: http://identifiers.org/hgnc/11404

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000115694
ensembl protein: ENSP00000404960
ensembl transcript: ENST00000429279
gene symbol: STK25
hgvsc: ENST00000429279.1:c.-22+44G>A
variant of: http://identifiers.org/hgnc/11404

GenotypeDepth
all individuals: 32348
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 13783
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1737
bin: 1.75e1
variant carriers: 2

GenotypeDepth
all individuals: 6037
bin: 1.25e1
variant carriers: 1

GenotypeDepth
all individuals: 703
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2199
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 7
bin: 5.75e1
variant carriers: 1

GenotypeDepth
all individuals: 2
bin: 7.25e1
variant carriers: 1

GenotypeDepth
all individuals: 2
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3669
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 11
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 10
bin: 5.25e1
variant carriers: 1

GenotypeDepth
all individuals: 0
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 105
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 43
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 6.25e1
variant carriers: 1

GenotypeDepth
all individuals: 0
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2285
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 32109
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 423
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 134
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2208
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 432
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 826
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 113
bin: 9.75e1
variant carriers: 6

GenotypeQuality
all individuals: 2032
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 364
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 519
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1370
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 153
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15254
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1257
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 468
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 325
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 286
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2704
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 458
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3304
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 2.0e-4
allele num: 10000
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 3.663003663003663e-4
allele num: 2730
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 7.438262421898245e-5
allele num: 26888
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 4.178854993731718e-4
allele num: 4786
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.65e0

BaseQRankSum
type: SiteQuality
SIO_000300: 9.81e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.200000000000001e-3

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.41e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.97e-1

QD
type: SiteQuality
SIO_000300: 1.31e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 7.70449e5

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000115694
ensembl protein: ENSP00000444886
ensembl transcript: ENST00000543554
gene symbol: STK25
hgvsc: ENST00000543554.1:c.-22+43C>T
variant of: http://identifiers.org/hgnc/11404

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000115694
ensembl protein: ENSP00000395104
ensembl transcript: ENST00000413760
gene symbol: STK25
hgvsc: ENST00000413760.1:c.-22+43C>T
variant of: http://identifiers.org/hgnc/11404

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000115694
ensembl protein: ENSP00000384444
ensembl transcript: ENST00000405883
gene symbol: STK25
hgvsc: ENST00000405883.3:c.31-639C>T
variant of: http://identifiers.org/hgnc/11404

GenotypeDepth
all individuals: 1794
bin: 1.75e1
variant carriers: 2

GenotypeDepth
all individuals: 46
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 722
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3817
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 31310
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5984
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 15008
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1841
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 7
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 9
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 11
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 105
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1310
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 543
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1947
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 337
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 386
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1465
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16561
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 154
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 358
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 134
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 110
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 2026
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2188
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 296
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 358
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31276
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 642
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 468
bin: 4.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10202
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 476
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3438
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4994
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 6.961849067112225e-5
allele num: 28728
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2994
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2890
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 7.93182e5

FS
type: SiteQuality
SIO_000300: 3.527e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.22e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.721e-1

QD
type: SiteQuality
SIO_000300: 1.401e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.27e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.37e-1

MQ
type: SiteQuality
SIO_000300: 5.892e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-3

MQRankSum
type: SiteQuality
SIO_000300: -1.48e-1

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000115694
ensembl protein: ENSP00000444886
ensembl transcript: ENST00000543554
gene symbol: STK25
hgvsc: ENST00000543554.1:c.-22+28T>G
variant of: http://identifiers.org/hgnc/11404

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000115694
ensembl transcript: ENST00000496159
gene symbol: STK25
hgvsc: ENST00000496159.1:n.171+78T>G
variant of: http://identifiers.org/hgnc/11404

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000115694
ensembl protein: ENSP00000412617
ensembl transcript: ENST00000436402
gene symbol: STK25
hgvsc: ENST00000436402.1:c.261+28T>G
variant of: http://identifiers.org/hgnc/11404

GenotypeDepth
all individuals: 0
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 612
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 5168
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 881
bin: 3.25e1
variant carriers: 1

GenotypeDepth
all individuals: 5439
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 22083
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 2119
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 24190
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 10
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 45
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 6
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 9
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 119
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1470
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22636
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25550
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1976
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 725
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1812
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 596
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 796
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 759
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 124
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 195
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 172
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 416
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 110
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2095
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 325
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 431
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 382
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4642
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 578
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.536098310291859e-4
allele num: 6510
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4410
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 41624
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5506
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11916
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.5e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -2.036e0

VQSLOD
type: SiteQuality
SIO_000300: -2.539e0

QD
type: SiteQuality
SIO_000300: 8.9e0

DP
type: SiteQuality
SIO_000300: 9.62278e5

MQRankSum
type: SiteQuality
SIO_000300: -1.532e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.863e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.91e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.98e0

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000115694
ensembl transcript: ENST00000436917
gene symbol: STK25
hgvsc: ENST00000436917.1:n.439+24A>G
variant of: http://identifiers.org/hgnc/11404

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000115694
ensembl protein: ENSP00000384444
ensembl transcript: ENST00000405883
gene symbol: STK25
hgvsc: ENST00000405883.3:c.31-658A>G
variant of: http://identifiers.org/hgnc/11404

Annotation
canonical: true
consequence: intron_variant
ensembl gene: ENSG00000115694
ensembl protein: ENSP00000325748
ensembl transcript: ENST00000316586
gene symbol: STK25
hgvsc: ENST00000316586.4:c.261+24A>G
variant of: http://identifiers.org/hgnc/11404

GenotypeDepth
all individuals: 517
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 6
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2346
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 10
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 5306
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 124
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 25652
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 8.25e1
variant carriers: 1

GenotypeDepth
all individuals: 45
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 20050
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 9.25e1
variant carriers: 1

GenotypeDepth
all individuals: 5665
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 9
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 950
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1794
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 414
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1395
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2099
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 493
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1526
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25493
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 432
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 593
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 686
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 135
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 110
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 168
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2097
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20532
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1477
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 173
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 957
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 44094
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6864
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5004
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4570
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 610
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6064
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.627074520013016e-4
allele num: 12292
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.8e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.77e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.7e-3

FS
type: SiteQuality
SIO_000300: 6.151e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -2.32e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.244e0

DP
type: SiteQuality
SIO_000300: 9.9787e5

QD
type: SiteQuality
SIO_000300: 1.94e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.681e0

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000115694
ensembl protein: ENSP00000384162
ensembl transcript: ENST00000403346
gene symbol: STK25
hgvsc: ENST00000403346.3:c.261+22G>T
variant of: http://identifiers.org/hgnc/11404

Annotation
canonical: true
consequence: intron_variant
ensembl gene: ENSG00000115694
ensembl protein: ENSP00000325748
ensembl transcript: ENST00000316586
gene symbol: STK25
hgvsc: ENST00000316586.4:c.261+22G>T
variant of: http://identifiers.org/hgnc/11404

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000115694
ensembl protein: ENSP00000412617
ensembl transcript: ENST00000436402
gene symbol: STK25
hgvsc: ENST00000436402.1:c.261+22G>T
variant of: http://identifiers.org/hgnc/11404

GenotypeDepth
all individuals: 2233
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 123
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 8.25e1
variant carriers: 1

GenotypeDepth
all individuals: 10
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 18460
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 9.25e1
variant carriers: 1

GenotypeDepth
all individuals: 46
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 441
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 6169
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 27076
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5096
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 6
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1013
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 9
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2315
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1721
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 136
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 539
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 19079
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1037
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 523
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 829
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28655
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2031
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 110
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 164
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 286
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1436
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 425
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 661
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 433
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 191
bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.594387755102041e-4
allele num: 12544
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7080
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 45952
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 626
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6536
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5288
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4718
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.6e-3

DP
type: SiteQuality
SIO_000300: 1.028595e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.91e0

FS
type: SiteQuality
SIO_000300: 7.883e0

MQRankSum
type: SiteQuality
SIO_000300: -1.18e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.62e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.94e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.425e0

VQSLOD
type: SiteQuality
SIO_000300: -1.055e0

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000115694
ensembl transcript: ENST00000452891
gene symbol: STK25
hgvsc: ENST00000452891.1:n.490+20G>A
variant of: http://identifiers.org/hgnc/11404

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000115694
ensembl protein: ENSP00000412617
ensembl transcript: ENST00000436402
gene symbol: STK25
hgvsc: ENST00000436402.1:c.261+20G>A
variant of: http://identifiers.org/hgnc/11404

Annotation
canonical: true
consequence: intron_variant
ensembl gene: ENSG00000115694
ensembl protein: ENSP00000325748
ensembl transcript: ENST00000316586
gene symbol: STK25
hgvsc: ENST00000316586.4:c.261+20G>A
variant of: http://identifiers.org/hgnc/11404

GenotypeDepth
all individuals: 2171
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 28684
bin: 2.25e1
variant carriers: 1

GenotypeDepth
all individuals: 4755
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 9
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 396
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 6
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 130
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 16663
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 48
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1111
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 6701
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 10
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 17309
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 165
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 135
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 554
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 651
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 201
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2457
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1614
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 482
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 811
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1912
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1398
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 846
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 265
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 595
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 446
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30616
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 111
bin: 9.75e1
variant carriers: 2

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5598
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.082378909666403e-5
allele num: 48022
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7342
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 664
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7076
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.803964413922273e-5
allele num: 12814
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4894
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.28e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 7.39e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.16e0

QD
type: SiteQuality
SIO_000300: 1.707e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 8.51e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.19e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.3e-3

DP
type: SiteQuality
SIO_000300: 1.062933e6

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000115694
ensembl protein: ENSP00000404960
ensembl transcript: ENST00000429279
gene symbol: STK25
hgvsc: ENST00000429279.1:c.-22+19C>T
variant of: http://identifiers.org/hgnc/11404

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000115694
ensembl protein: ENSP00000401114
ensembl transcript: ENST00000435225
gene symbol: STK25
hgvsc: ENST00000435225.1:c.-22+19C>T
variant of: http://identifiers.org/hgnc/11404

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000115694
ensembl protein: ENSP00000446008
ensembl transcript: ENST00000535007
gene symbol: STK25
hgvsc: ENST00000535007.1:c.-22+19C>T
variant of: http://identifiers.org/hgnc/11404

GenotypeDepth
all individuals: 1
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 6
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 30361
bin: 2.25e1
variant carriers: 1

GenotypeDepth
all individuals: 354
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2045
bin: 1.75e1
variant carriers: 1

GenotypeDepth
all individuals: 15084
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 10
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 4369
bin: 1.25e1
variant carriers: 1

GenotypeDepth
all individuals: 7080
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 130
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 47
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1191
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 9
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 137
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 115
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 407
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 590
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 590
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1480
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 111
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 480
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 274
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 196
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15730
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1283
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 211
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33175
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 593
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1800
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2635
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 756
bin: 4.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5084
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.325556733828208e-4
allele num: 7544
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.004329351399022e-5
allele num: 49892
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.31578947368421e-4
allele num: 7600
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 690
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13116
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5930
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.75e0

DP
type: SiteQuality
SIO_000300: 1.093779e6

MQRankSum
type: SiteQuality
SIO_000300: 3.52e-1

FS
type: SiteQuality
SIO_000300: 3.625e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.54e-1

QD
type: SiteQuality
SIO_000300: 1.227e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.8e-3

VQSLOD
type: SiteQuality
SIO_000300: 9.98e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.43e-1

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000115694
ensembl transcript: ENST00000461760
gene symbol: STK25
hgvsc: ENST00000461760.1:n.77-1181A>G
variant of: http://identifiers.org/hgnc/11404

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000115694
ensembl transcript: ENST00000496159
gene symbol: STK25
hgvsc: ENST00000496159.1:n.171+66A>G
variant of: http://identifiers.org/hgnc/11404

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000115694
ensembl protein: ENSP00000403866
ensembl transcript: ENST00000440109
gene symbol: STK25
hgvsc: ENST00000440109.1:c.-22+16A>G
variant of: http://identifiers.org/hgnc/11404

GenotypeDepth
all individuals: 3428
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 7613
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 34589
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 282
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 10
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1533
bin: 1.75e1
variant carriers: 1

GenotypeDepth
all individuals: 1
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 11790
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 48
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1251
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 9
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 6
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 130
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12336
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 112
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 28
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 296
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 968
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 105
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1365
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 518
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38159
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 439
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 76
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 388
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 231
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 649
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1171
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 529
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2974
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 218
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8168
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5452
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8518
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13764
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6664
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 736
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.861573401839235e-5
allele num: 53718
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.41e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.58e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.11e-1

DP
type: SiteQuality
SIO_000300: 1.157405e6

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 1.15e0

VQSLOD
type: SiteQuality
SIO_000300: 4.81e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-3

QD
type: SiteQuality
SIO_000300: 1.322e1

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000115694
ensembl protein: ENSP00000412617
ensembl transcript: ENST00000436402
gene symbol: STK25
hgvsc: ENST00000436402.1:c.261+15G>A
variant of: http://identifiers.org/hgnc/11404

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000115694
ensembl protein: ENSP00000395104
ensembl transcript: ENST00000413760
gene symbol: STK25
hgvsc: ENST00000413760.1:c.-22+15G>A
variant of: http://identifiers.org/hgnc/11404

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000115694
ensembl protein: ENSP00000384162
ensembl transcript: ENST00000403346
gene symbol: STK25
hgvsc: ENST00000403346.3:c.261+15G>A
variant of: http://identifiers.org/hgnc/11404

GenotypeDepth
all individuals: 1434
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1308
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 35439
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 9
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 7781
bin: 2.75e1
variant carriers: 2

GenotypeDepth
all individuals: 2
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 257
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 3241
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 49
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 132
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 11
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 6
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 11022
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 101
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1128
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 114
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 11549
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 662
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38841
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 289
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 912
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1322
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 447
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 514
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 382
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 522
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 226
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2993
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 438
bin: 4.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.665554781716213e-5
allele num: 54562
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 742
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8718
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6834
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8264
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5518
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13908
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.26e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.77e-1

FS
type: SiteQuality
SIO_000300: 7.972e0

VQSLOD
type: SiteQuality
SIO_000300: 2.11e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.5e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-3

DP
type: SiteQuality
SIO_000300: 1.172696e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.047e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.86e-1

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000115694
ensembl transcript: ENST00000461760
gene symbol: STK25
hgvsc: ENST00000461760.1:n.77-1190G>A
variant of: http://identifiers.org/hgnc/11404

Annotation
canonical: false
consequence: splice_region_variant
consequence: intron_variant
ensembl gene: ENSG00000115694
ensembl protein: ENSP00000446008
ensembl transcript: ENST00000535007
gene symbol: STK25
hgvsc: ENST00000535007.1:c.-22+7G>A
variant of: http://identifiers.org/hgnc/11404

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: non_coding_transcript_exon_variant
ensembl gene: ENSG00000115694
ensembl transcript: ENST00000495372
gene symbol: STK25
hgvsc: ENST00000495372.1:n.447G>A
variant of: http://identifiers.org/hgnc/11404

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: splice_region_variant
consequence: intron_variant
ensembl gene: ENSG00000115694
ensembl transcript: ENST00000483603
gene symbol: STK25
hgvsc: ENST00000483603.1:n.555+7G>A
variant of: http://identifiers.org/hgnc/11404

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: splice_region_variant
consequence: intron_variant
ensembl gene: ENSG00000115694
ensembl transcript: ENST00000436917
gene symbol: STK25
hgvsc: ENST00000436917.1:n.439+7G>A
variant of: http://identifiers.org/hgnc/11404

GenotypeDepth
all individuals: 9143
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 172
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 10
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 52
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 6
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 6239
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 9
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1559
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 40521
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1960
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 146
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 9.75e1
variant carriers: 1

GenotypeDepth
all individuals: 874
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 604
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 45065
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 299
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 757
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 183
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6607
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 431
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 774
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 350
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3426
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 234
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 599
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 266
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 112
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 702
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 85
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9012
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.341921631776704e-4
allele num: 14904
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 798
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 59806
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7806
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6018
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10050
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.97e1

QD
type: SiteQuality
SIO_000300: 2.276e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.871e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.13e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.1e-3

DP
type: SiteQuality
SIO_000300: 1.267796e6

VQSLOD
type: SiteQuality
SIO_000300: -2.443e0

MQRankSum
type: SiteQuality
SIO_000300: 9.13e-1

FS
type: SiteQuality
SIO_000300: 2.661e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.18e0

Annotation
canonical: false
consequence: 5_prime_UTR_variant
ensembl gene: ENSG00000115694
ensembl protein: ENSP00000395104
ensembl transcript: ENST00000413760
gene symbol: STK25
hgvsc: ENST00000413760.1:c.-27C>T
variant of: http://identifiers.org/hgnc/11404

Annotation
canonical: false
consequence: 5_prime_UTR_variant
ensembl gene: ENSG00000115694
ensembl protein: ENSP00000399212
ensembl transcript: ENST00000450497
gene symbol: STK25
hgvsc: ENST00000450497.1:c.-308C>T
variant of: http://identifiers.org/hgnc/11404

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000115694
ensembl transcript: ENST00000496159
gene symbol: STK25
hgvsc: ENST00000496159.1:n.171+45C>T
variant of: http://identifiers.org/hgnc/11404

GenotypeDepth
all individuals: 1
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 865
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 10835
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1815
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 43781
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 9
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 6
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2649
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 108
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 49
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 413
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 153
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 11
bin: 4.75e1
variant carriers: 1

GenotypeDepth
all individuals: 2
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 674
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 878
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 81
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 117
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 260
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 236
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 302
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 49968
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 168
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 183
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 261
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2823
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 76
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 114
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3948
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 355
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 195
bin: 4.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 862
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10942
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6408
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8384
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9772
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15788
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.570845114671693e-5
allele num: 63660
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.12e0

QD
type: SiteQuality
SIO_000300: 1.159e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -1.21e-1

DP
type: SiteQuality
SIO_000300: 1.345317e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.18e-1

FS
type: SiteQuality
SIO_000300: 7.9e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.94e0

VQSLOD
type: SiteQuality
SIO_000300: 7.75e-1

MQ
type: SiteQuality
SIO_000300: 5.933e1

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000115694
ensembl protein: ENSP00000384444
ensembl transcript: ENST00000405883
gene symbol: STK25
hgvsc: ENST00000405883.3:c.31-692C>T
variant of: http://identifiers.org/hgnc/11404

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000115694
ensembl transcript: ENST00000461760
gene symbol: STK25
hgvsc: ENST00000461760.1:n.77-1207C>T
variant of: http://identifiers.org/hgnc/11404

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: non_coding_transcript_exon_variant
ensembl gene: ENSG00000115694
ensembl transcript: ENST00000492127
gene symbol: STK25
hgvsc: ENST00000492127.1:n.211C>T
variant of: http://identifiers.org/hgnc/11404

GenotypeDepth
all individuals: 155
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 44169
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 9
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 11395
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 6
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 604
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 11
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 87
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 1922
bin: 3.25e1
variant carriers: 1

GenotypeDepth
all individuals: 1928
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 359
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 50
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 245
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2051
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 910
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 131
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 180
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 194
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 97
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 75
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 115
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 158
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 223
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 246
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4122
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 699
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 269
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 50860
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6474
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15980
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.553132668592551e-5
allele num: 64386
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8486
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11172
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9940
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 874
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.679e0

DP
type: SiteQuality
SIO_000300: 1.363152e6

VQSLOD
type: SiteQuality
SIO_000300: 4.07e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.45e0

FS
type: SiteQuality
SIO_000300: 3.854e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.53e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.221e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.139999999999999e-1

Annotation
canonical: false
consequence: 5_prime_UTR_variant
ensembl gene: ENSG00000115694
ensembl protein: ENSP00000401114
ensembl transcript: ENST00000435225
gene symbol: STK25
hgvsc: ENST00000435225.1:c.-37T>C
variant of: http://identifiers.org/hgnc/11404

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: non_coding_transcript_exon_variant
ensembl gene: ENSG00000115694
ensembl transcript: ENST00000452891
gene symbol: STK25
hgvsc: ENST00000452891.1:n.475T>C
variant of: http://identifiers.org/hgnc/11404

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000115694
ensembl protein: ENSP00000417020
ensembl transcript: ENST00000424537
gene symbol: STK25
hgvsc: ENST00000424537.1:c.31-1212T>C
variant of: http://identifiers.org/hgnc/11404

GenotypeDepth
all individuals: 1389
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 446
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 55
bin: 4.25e1
variant carriers: 2

GenotypeDepth
all individuals: 1976
bin: 3.25e1
variant carriers: 6

GenotypeDepth
all individuals: 72
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 6.25e1
variant carriers: 1

GenotypeDepth
all individuals: 44479
bin: 2.25e1
variant carriers: 6

GenotypeDepth
all individuals: 8
bin: 5.75e1
variant carriers: 2

GenotypeDepth
all individuals: 1
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 11817
bin: 2.75e1
variant carriers: 1

GenotypeDepth
all individuals: 155
bin: 3.75e1
variant carriers: 4

GenotypeDepth
all individuals: 273
bin: 1.75e1
variant carriers: 2

GenotypeDepth
all individuals: 0
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 10
bin: 5.25e1
variant carriers: 1

GenotypeDepth
all individuals: 3
bin: 9.75e1
variant carriers: 2

GenotypeDepth
all individuals: 13
bin: 4.75e1
variant carriers: 3

GenotypeDepth
all individuals: 2
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 51665
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1473
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 716
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 175
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 164
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 108
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 120
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 146
bin: 9.75e1
variant carriers: 30

GenotypeQuality
all individuals: 144
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 947
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 83
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 75
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4258
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 270
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 77
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 77
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 163
bin: 5.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6522
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11286
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16134
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8544
num of homozygotes: 0

African
type: Population
allele count: 30
allele frequency: 2.97914597815293e-3
allele num: 10070
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65008
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.163e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.83e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.0e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.315e0

VQSLOD
type: SiteQuality
SIO_000300: 1.78e0

MQ
type: SiteQuality
SIO_000300: 5.939e1

MQRankSum
type: SiteQuality
SIO_000300: 3.2e-2

DP
type: SiteQuality
SIO_000300: 1.376692e6

QD
type: SiteQuality
SIO_000300: 1.142e1

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000115694
ensembl transcript: ENST00000461760
gene symbol: STK25
hgvsc: ENST00000461760.1:n.77-1219G>A
variant of: http://identifiers.org/hgnc/11404

Annotation
canonical: false
consequence: 5_prime_UTR_variant
ensembl gene: ENSG00000115694
ensembl protein: ENSP00000406208
ensembl transcript: ENST00000439101
gene symbol: STK25
hgvsc: ENST00000439101.1:c.-95G>A
variant of: http://identifiers.org/hgnc/11404

Annotation
canonical: false
consequence: 5_prime_UTR_variant
ensembl gene: ENSG00000115694
ensembl protein: ENSP00000446008
ensembl transcript: ENST00000535007
gene symbol: STK25
hgvsc: ENST00000535007.1:c.-44G>A
variant of: http://identifiers.org/hgnc/11404

GenotypeDepth
all individuals: 217
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 309
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 12253
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 9
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 7
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 60
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 59
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 44582
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 925
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 171
bin: 3.75e1
variant carriers: 1

GenotypeDepth
all individuals: 1
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2094
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 10
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 137
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 978
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 280
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 711
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 131
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 959
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4335
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 52188
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 118
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 131
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 118
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 73
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 121
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 163
bin: 5.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65458
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10204
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.143260842855388e-5
allele num: 16278
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6562
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8600
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11386
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.36e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

MQRankSum
type: SiteQuality
SIO_000300: 1.79e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.784e0

VQSLOD
type: SiteQuality
SIO_000300: -3.037e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.94e-1

DP
type: SiteQuality
SIO_000300: 1.389002e6

QD
type: SiteQuality
SIO_000300: 1.062e1

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000115694
ensembl transcript: ENST00000461760
gene symbol: STK25
hgvsc: ENST00000461760.1:n.77-1220C>T
variant of: http://identifiers.org/hgnc/11404

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: non_coding_transcript_exon_variant
ensembl gene: ENSG00000115694
ensembl transcript: ENST00000495372
gene symbol: STK25
hgvsc: ENST00000495372.1:n.417C>T
variant of: http://identifiers.org/hgnc/11404

Annotation
canonical: false
consequence: 5_prime_UTR_variant
ensembl gene: ENSG00000115694
ensembl protein: ENSP00000399212
ensembl transcript: ENST00000450497
gene symbol: STK25
hgvsc: ENST00000450497.1:c.-326C>T
variant of: http://identifiers.org/hgnc/11404

GenotypeDepth
all individuals: 7
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 173
bin: 3.75e1
variant carriers: 1

GenotypeDepth
all individuals: 225
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 17
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 871
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 58
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 44549
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 11
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 291
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 59
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 12333
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2102
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 123
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 121
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 118
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4356
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 109
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 134
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 713
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 918
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 283
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 215
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 75
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 198
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 52110
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 964
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11398
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.163061177017911e-4
allele num: 8598
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6572
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10216
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16294
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -2.9e-1

QD
type: SiteQuality
SIO_000300: 7.8e0

DP
type: SiteQuality
SIO_000300: 1.390812e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.595e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.52e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.37e-1

FS
type: SiteQuality
SIO_000300: 5.649999999999999e-1

VQSLOD
type: SiteQuality
SIO_000300: -8.812e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.1e-2

Annotation
canonical: false
consequence: 5_prime_UTR_variant
ensembl gene: ENSG00000115694
ensembl protein: ENSP00000406208
ensembl transcript: ENST00000439101
gene symbol: STK25
hgvsc: ENST00000439101.1:c.-96C>A
variant of: http://identifiers.org/hgnc/11404

Annotation
canonical: false
consequence: 5_prime_UTR_variant
ensembl gene: ENSG00000115694
ensembl protein: ENSP00000403866
ensembl transcript: ENST00000440109
gene symbol: STK25
hgvsc: ENST00000440109.1:c.-45C>A
variant of: http://identifiers.org/hgnc/11404

Annotation
canonical: false
consequence: 5_prime_UTR_variant
ensembl gene: ENSG00000115694
ensembl protein: ENSP00000444886
ensembl transcript: ENST00000543554
gene symbol: STK25
hgvsc: ENST00000543554.1:c.-45C>A
variant of: http://identifiers.org/hgnc/11404

GenotypeDepth
all individuals: 2102
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 7
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 12333
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 225
bin: 1.75e1
variant carriers: 1

GenotypeDepth
all individuals: 871
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 44549
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 291
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 173
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 59
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 17
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 58
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 11
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 109
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 121
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 713
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 134
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 283
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4356
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 918
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 123
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 75
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 198
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 7.5e0
variant carriers: 1

GenotypeQuality
all individuals: 52110
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 215
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 964
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 118
bin: 9.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16294
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8598
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11398
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10216
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6572
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.37e-1

DP
type: SiteQuality
SIO_000300: 1.390812e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.52e-2

VQSLOD
type: SiteQuality
SIO_000300: -8.812e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.1e-2

FS
type: SiteQuality
SIO_000300: 5.649999999999999e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.9e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.595e0

QD
type: SiteQuality
SIO_000300: 7.8e0

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000115694
ensembl protein: ENSP00000417020
ensembl transcript: ENST00000424537
gene symbol: STK25
hgvsc: ENST00000424537.1:c.31-1226A>G
variant of: http://identifiers.org/hgnc/11404

Annotation
canonical: false
consequence: 5_prime_UTR_variant
ensembl gene: ENSG00000115694
ensembl protein: ENSP00000446008
ensembl transcript: ENST00000535007
gene symbol: STK25
hgvsc: ENST00000535007.1:c.-51A>G
variant of: http://identifiers.org/hgnc/11404

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000115694
ensembl protein: ENSP00000384444
ensembl transcript: ENST00000405883
gene symbol: STK25
hgvsc: ENST00000405883.3:c.31-711A>G
variant of: http://identifiers.org/hgnc/11404

GenotypeDepth
all individuals: 2
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2253
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 12666
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 10
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 7
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 260
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 281
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 23
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 718
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 234
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 53
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 44113
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 9.75e1
variant carriers: 1

GenotypeDepth
all individuals: 75
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4386
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 111
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 77
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 291
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 147
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 958
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 118
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 52055
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 752
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 118
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 70
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 287
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 196
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 722
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 229
bin: 5.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11430
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.761811792268645e-5
allele num: 10244
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65686
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16370
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6580
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.35e0

MQRankSum
type: SiteQuality
SIO_000300: 1.01e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -3.313e-1

MQ
type: SiteQuality
SIO_000300: 5.505e1

QD
type: SiteQuality
SIO_000300: 1.215e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.336e0

FS
type: SiteQuality
SIO_000300: 3.329e0

DP
type: SiteQuality
SIO_000300: 1.398152e6

BaseQRankSum
type: SiteQuality
SIO_000300: 3.02e0

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: non_coding_transcript_exon_variant
ensembl gene: ENSG00000115694
ensembl transcript: ENST00000452891
gene symbol: STK25
hgvsc: ENST00000452891.1:n.459A>T
variant of: http://identifiers.org/hgnc/11404

Annotation
canonical: false
consequence: 5_prime_UTR_variant
ensembl gene: ENSG00000115694
ensembl protein: ENSP00000401114
ensembl transcript: ENST00000435225
gene symbol: STK25
hgvsc: ENST00000435225.1:c.-53A>T
variant of: http://identifiers.org/hgnc/11404

Annotation
canonical: false
consequence: 5_prime_UTR_variant
ensembl gene: ENSG00000115694
ensembl protein: ENSP00000403607
ensembl transcript: ENST00000442307
gene symbol: STK25
hgvsc: ENST00000442307.1:c.-53A>T
variant of: http://identifiers.org/hgnc/11404

GenotypeDepth
all individuals: 1
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 212
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 266
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 52
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 68
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 247
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 8
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 9.75e1
variant carriers: 1

GenotypeDepth
all individuals: 16
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 664
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 10
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 12774
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2260
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 44117
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4391
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 77
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 52329
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 710
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 97
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 962
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 103
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 189
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 112
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 224
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 137
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 719
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 285
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 118
bin: 9.75e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10250
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65762
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.102770657878677e-5
allele num: 16386
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11432
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.051e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -4.644e-1

FS
type: SiteQuality
SIO_000300: 9.196999999999999e0

MQ
type: SiteQuality
SIO_000300: 5.962e1

DP
type: SiteQuality
SIO_000300: 1.399195e6

MQRankSum
type: SiteQuality
SIO_000300: 1.3e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 8.68e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.74e-1

QD
type: SiteQuality
SIO_000300: 1.286e1

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000115694
ensembl transcript: ENST00000496159
gene symbol: STK25
hgvsc: ENST00000496159.1:n.171+13G>A
variant of: http://identifiers.org/hgnc/11404

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: non_coding_transcript_exon_variant
ensembl gene: ENSG00000115694
ensembl transcript: ENST00000436917
gene symbol: STK25
hgvsc: ENST00000436917.1:n.402G>A
variant of: http://identifiers.org/hgnc/11404

Annotation
canonical: false
consequence: 5_prime_UTR_variant
ensembl gene: ENSG00000115694
ensembl protein: ENSP00000444886
ensembl transcript: ENST00000543554
gene symbol: STK25
hgvsc: ENST00000543554.1:c.-59G>A
variant of: http://identifiers.org/hgnc/11404

GenotypeDepth
all individuals: 244
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 237
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 553
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 12997
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 182
bin: 3.75e1
variant carriers: 1

GenotypeDepth
all individuals: 9
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 55
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 49
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 9.75e1
variant carriers: 1

GenotypeDepth
all individuals: 2
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 44104
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2247
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 8
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 11
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 723
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 971
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 156
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 289
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 109
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 125
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 130
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 601
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 97
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 77
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 111
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 52526
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4436
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 119
bin: 9.75e1
variant carriers: 2

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10262
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.0351777096549e-5
allele num: 65894
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11466
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16418
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.93e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.21e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.528e0

VQSLOD
type: SiteQuality
SIO_000300: -1.469e-1

QD
type: SiteQuality
SIO_000300: 1.274e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

FS
type: SiteQuality
SIO_000300: 1.2879e1

MQRankSum
type: SiteQuality
SIO_000300: 2.17e-1

DP
type: SiteQuality
SIO_000300: 1.401282e6

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: non_coding_transcript_exon_variant
ensembl gene: ENSG00000115694
ensembl transcript: ENST00000492127
gene symbol: STK25
hgvsc: ENST00000492127.1:n.180G>A
variant of: http://identifiers.org/hgnc/11404

Annotation
canonical: true
consequence: missense_variant
ensembl gene: ENSG00000115694
ensembl protein: ENSP00000325748
ensembl transcript: ENST00000316586
gene symbol: STK25
hgvsc: ENST00000316586.4:c.220G>A
hgvsp: ENSP00000325748.4:p.Asp74Asn
variant of: http://identifiers.org/hgnc/11404

Annotation
canonical: false
consequence: missense_variant
ensembl gene: ENSG00000115694
ensembl protein: ENSP00000384162
ensembl transcript: ENST00000403346
gene symbol: STK25
hgvsc: ENST00000403346.3:c.220G>A
hgvsp: ENSP00000384162.3:p.Asp74Asn
variant of: http://identifiers.org/hgnc/11404

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000115694
ensembl transcript: ENST00000496159
gene symbol: STK25
hgvsc: ENST00000496159.1:n.171+9G>A
variant of: http://identifiers.org/hgnc/11404

GenotypeDepth
all individuals: 1
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 233
bin: 1.75e1
variant carriers: 1

GenotypeDepth
all individuals: 7
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 44070
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 59
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 48
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 228
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 499
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 12
bin: 5.25e1
variant carriers: 1

GenotypeDepth
all individuals: 13110
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 6.75e1
variant carriers: 1

GenotypeDepth
all individuals: 1
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2244
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 11
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 175
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 126
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 547
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 117
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 97
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 129
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 716
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4471
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 107
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 52652
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 120
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 70
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 967
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 286
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.159285879897983e-4
allele num: 8626
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16430
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10274
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.032140691328078e-5
allele num: 65960
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11480
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.402787e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.546e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.86e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

QD
type: SiteQuality
SIO_000300: 1.301e1

VQSLOD
type: SiteQuality
SIO_000300: 1.19e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.17e0

MQRankSum
type: SiteQuality
SIO_000300: 5.83e-1

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: non_coding_transcript_exon_variant
ensembl gene: ENSG00000115694
ensembl transcript: ENST00000495372
gene symbol: STK25
hgvsc: ENST00000495372.1:n.398C>T
variant of: http://identifiers.org/hgnc/11404

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: non_coding_transcript_exon_variant
ensembl gene: ENSG00000115694
ensembl transcript: ENST00000452891
gene symbol: STK25
hgvsc: ENST00000452891.1:n.448C>T
variant of: http://identifiers.org/hgnc/11404

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: non_coding_transcript_exon_variant
ensembl gene: ENSG00000115694
ensembl transcript: ENST00000483603
gene symbol: STK25
hgvsc: ENST00000483603.1:n.513C>T
variant of: http://identifiers.org/hgnc/11404

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000115694
ensembl transcript: ENST00000461760
gene symbol: STK25
hgvsc: ENST00000461760.1:n.77-1239C>T
variant of: http://identifiers.org/hgnc/11404

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: non_coding_transcript_exon_variant
ensembl gene: ENSG00000115694
ensembl transcript: ENST00000492127
gene symbol: STK25
hgvsc: ENST00000492127.1:n.179C>T
variant of: http://identifiers.org/hgnc/11404

GenotypeDepth
all individuals: 2
bin: 7.25e1
variant carriers: 1

GenotypeDepth
all individuals: 61
bin: 4.25e1
variant carriers: 1

GenotypeDepth
all individuals: 0
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 214
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 7
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 222
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 44030
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 13
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 9
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 484
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 9.75e1
variant carriers: 1

GenotypeDepth
all individuals: 170
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 49
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 13173
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2264
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 117
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 717
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 52701
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 531
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 967
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 110
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 97
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4472
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 286
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 120
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 106
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 92
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10276
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16436
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8630
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.546970202188609e-5
allele num: 65978
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11480
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.953e1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.44e-1

FS
type: SiteQuality
SIO_000300: 1.161e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.92e-1

QD
type: SiteQuality
SIO_000300: 1.121e1

MQRankSum
type: SiteQuality
SIO_000300: 1.2e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.65e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.43e0

DP
type: SiteQuality
SIO_000300: 1.4038e6

Annotation
canonical: false
consequence: 5_prime_UTR_variant
ensembl gene: ENSG00000115694
ensembl protein: ENSP00000406208
ensembl transcript: ENST00000439101
gene symbol: STK25
hgvsc: ENST00000439101.1:c.-120_-117delCAGT
variant of: http://identifiers.org/hgnc/11404

Annotation
canonical: false
consequence: 5_prime_UTR_variant
ensembl gene: ENSG00000115694
ensembl protein: ENSP00000403866
ensembl transcript: ENST00000440109
gene symbol: STK25
hgvsc: ENST00000440109.1:c.-69_-66delCAGT
variant of: http://identifiers.org/hgnc/11404

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000115694
ensembl protein: ENSP00000417020
ensembl transcript: ENST00000424537
gene symbol: STK25
hgvsc: ENST00000424537.1:c.31-1244_31-1241delCAGT
variant of: http://identifiers.org/hgnc/11404

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: non_coding_transcript_exon_variant
ensembl gene: ENSG00000115694
ensembl transcript: ENST00000492127
gene symbol: STK25
hgvsc: ENST00000492127.1:n.174_177delCAGT
variant of: http://identifiers.org/hgnc/11404

Annotation
canonical: false
consequence: 5_prime_UTR_variant
ensembl gene: ENSG00000115694
ensembl protein: ENSP00000395104
ensembl transcript: ENST00000413760
gene symbol: STK25
hgvsc: ENST00000413760.1:c.-69_-66delCAGT
variant of: http://identifiers.org/hgnc/11404

GenotypeDepth
all individuals: 1
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2246
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 9
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 13216
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 218
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 7
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 201
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 44058
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 10
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 467
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 49
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 55
bin: 4.25e1
variant carriers: 1

GenotypeDepth
all individuals: 2
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 163
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 513
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 86
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 52844
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 93
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 724
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 968
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 286
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4492
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 119
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 74
bin: 5.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65996
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10276
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11490
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.158748551564311e-4
allele num: 8630
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16440
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.403718e6

ClippingRankSum
type: SiteQuality
SIO_000300: -8.63e-1

QD
type: SiteQuality
SIO_000300: 1.391e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.85e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.23e0

MQ
type: SiteQuality
SIO_000300: 5.417e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -6.919999999999999e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.227e0

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000115694
ensembl protein: ENSP00000417020
ensembl transcript: ENST00000424537
gene symbol: STK25
hgvsc: ENST00000424537.1:c.31-1246G>A
variant of: http://identifiers.org/hgnc/11404

Annotation
canonical: false
consequence: 5_prime_UTR_variant
ensembl gene: ENSG00000115694
ensembl protein: ENSP00000446008
ensembl transcript: ENST00000535007
gene symbol: STK25
hgvsc: ENST00000535007.1:c.-71G>A
variant of: http://identifiers.org/hgnc/11404

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000115694
ensembl transcript: ENST00000461760
gene symbol: STK25
hgvsc: ENST00000461760.1:n.77-1246G>A
variant of: http://identifiers.org/hgnc/11404

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000115694
ensembl protein: ENSP00000384444
ensembl transcript: ENST00000405883
gene symbol: STK25
hgvsc: ENST00000405883.3:c.31-731G>A
variant of: http://identifiers.org/hgnc/11404

GenotypeDepth
all individuals: 7
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 44
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 185
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 44076
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 9
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 11
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 163
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 55
bin: 4.25e1
variant carriers: 1

GenotypeDepth
all individuals: 150
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 13318
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 414
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2267
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4514
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 965
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 119
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 70
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 723
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 447
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 52975
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 92
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 287
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11502
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.513592056668887e-5
allele num: 66068
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16464
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10302
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.9e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.852e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.1e-3

QD
type: SiteQuality
SIO_000300: 8.56e0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -2.613e0

DP
type: SiteQuality
SIO_000300: 1.405957e6

BaseQRankSum
type: SiteQuality
SIO_000300: -3.639e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.31e-1

MQ
type: SiteQuality
SIO_000300: 5.855e1

Annotation
canonical: false
consequence: synonymous_variant
ensembl gene: ENSG00000115694
ensembl protein: ENSP00000385687
ensembl transcript: ENST00000401869
gene symbol: STK25
hgvsc: ENST00000401869.1:c.210C>A
hgvsp: ENST00000401869.1:c.210C>A(p.%3D)
variant of: http://identifiers.org/hgnc/11404

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000115694
ensembl transcript: ENST00000461760
gene symbol: STK25
hgvsc: ENST00000461760.1:n.77-1248C>A
variant of: http://identifiers.org/hgnc/11404

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: non_coding_transcript_exon_variant
ensembl gene: ENSG00000115694
ensembl transcript: ENST00000492127
gene symbol: STK25
hgvsc: ENST00000492127.1:n.170C>A
variant of: http://identifiers.org/hgnc/11404

Annotation
canonical: false
consequence: 5_prime_UTR_variant
ensembl gene: ENSG00000115694
ensembl protein: ENSP00000395104
ensembl transcript: ENST00000413760
gene symbol: STK25
hgvsc: ENST00000413760.1:c.-73C>A
variant of: http://identifiers.org/hgnc/11404

GenotypeDepth
all individuals: 0
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 398
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 165
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 44033
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 9
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 7
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2284
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 173
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 13362
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 57
bin: 4.25e1
variant carriers: 1

GenotypeDepth
all individuals: 44
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 10
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 156
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 9.75e1
variant carriers: 1

GenotypeDepth
all individuals: 2
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 95
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4513
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 52972
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 438
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 964
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 722
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 284
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 120
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 78
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10306
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16468
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.026359592046727e-5
allele num: 66086
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11500
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 4.29e-1

FS
type: SiteQuality
SIO_000300: 2.05e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.2e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -9.429999999999999e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.28e0

QD
type: SiteQuality
SIO_000300: 1.442e1

DP
type: SiteQuality
SIO_000300: 1.40682e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.436e0