2-219618300-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 219618300
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 219618300
    reference: chr 2
allele count: 2
allele frequency: 1.647880825258717e-5
allele num: 121368
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000258398
  ensembl transcript: ENST00000258398
  gene symbol: TTLL4
  hgvsc: ENST00000258398.4:c.3259-7C>T
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000375951
  ensembl transcript: ENST00000392102
  gene symbol: TTLL4
  hgvsc: ENST00000392102.1:c.3259-7C>T
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135912
  ensembl transcript: ENST00000472527
  gene symbol: TTLL4
  hgvsc: ENST00000472527.1:n.89-7C>T
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000400068
  ensembl transcript: ENST00000417855
  gene symbol: TTLL4
  hgvsc: ENST00000417855.1:c.330-7C>T
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000396555
  ensembl transcript: ENST00000442769
  gene symbol: TTLL4
  hgvsc: ENST00000442769.1:c.3067-7C>T
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000393332
  ensembl transcript: ENST00000457313
  gene symbol: TTLL4
  hgvsc: ENST00000457313.1:c.2764-7C>T
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000415845
  ensembl transcript: ENST00000436668
  gene symbol: TTLL4
  hgvsc: ENST00000436668.1:c.566-7C>T
  variant of: http://identifiers.org/hgnc/28976
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1582
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3618
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3199
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4217
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3517
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5561
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5395
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5113
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4378
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2180
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3266
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3583
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5181
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2840
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4947
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2056
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4879
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2509
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 3.25e1
  variant carriers: 0
hgvs: c.3259-7C>T
num of homozygotes: 0
population: Other
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: QD

2-219618303-TTAG-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 219618303
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 219618300
    reference: chr 2
allele count: 5
allele frequency: 4.119430529923544e-5
allele num: 121376
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000258398
  ensembl transcript: ENST00000258398
  gene symbol: TTLL4
  hgvsc: ENST00000258398.4:c.3259-2_3259delAGT
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000400068
  ensembl transcript: ENST00000417855
  gene symbol: TTLL4
  hgvsc: ENST00000417855.1:c.330-2_330delAGT
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: true
  consequence: splice_acceptor_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000375951
  ensembl transcript: ENST00000392102
  gene symbol: TTLL4
  hgvsc: ENST00000392102.1:c.3259-2_3259delAGT
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000396555
  ensembl transcript: ENST00000442769
  gene symbol: TTLL4
  hgvsc: ENST00000442769.1:c.3067-2_3067delAGT
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135912
  ensembl transcript: ENST00000472527
  gene symbol: TTLL4
  hgvsc: ENST00000472527.1:n.89-2_89delAGT
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000393332
  ensembl transcript: ENST00000457313
  gene symbol: TTLL4
  hgvsc: ENST00000457313.1:c.2764-2_2764delAGT
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000415845
  ensembl transcript: ENST00000436668
  gene symbol: TTLL4
  hgvsc: ENST00000436668.1:c.566-2_566delAGT
  variant of: http://identifiers.org/hgnc/28976
canonical: true
consequence: splice acceptor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2180
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4948
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5180
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 4378
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2063
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3585
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5395
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5561
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4217
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3515
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5113
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1582
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3618
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3273
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3199
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2840
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4894
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2014
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2518
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.75e1
  variant carriers: 0
hgvs: c.3259-2_3259delAGT
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: TTAG
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum

2-219618314-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 219618314
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 219618314
    reference: chr 2
allele count: 1
allele frequency: 8.237639422047218e-6
allele num: 121394
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000396555
  ensembl transcript: ENST00000442769
  gene symbol: TTLL4
  hgvsc: ENST00000442769.1:c.3074T>A
  hgvsp: ENSP00000396555.1:p.Leu1025His
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000375951
  ensembl transcript: ENST00000392102
  gene symbol: TTLL4
  hgvsc: ENST00000392102.1:c.3266T>A
  hgvsp: ENSP00000375951.1:p.Leu1089His
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000400068
  ensembl transcript: ENST00000417855
  gene symbol: TTLL4
  hgvsc: ENST00000417855.1:c.337T>A
  hgvsp: ENSP00000400068.1:p.Leu113His
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000393332
  ensembl transcript: ENST00000457313
  gene symbol: TTLL4
  hgvsc: ENST00000457313.1:c.2771T>A
  hgvsp: ENSP00000393332.1:p.Leu924His
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000415845
  ensembl transcript: ENST00000436668
  gene symbol: TTLL4
  hgvsc: ENST00000436668.1:c.573T>A
  hgvsp: ENSP00000415845.1:p.Leu192His
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000258398
  ensembl transcript: ENST00000258398
  gene symbol: TTLL4
  hgvsc: ENST00000258398.4:c.3266T>A
  hgvsp: ENSP00000258398.4:p.Leu1089His
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135912
  ensembl transcript: ENST00000472527
  gene symbol: TTLL4
  hgvsc: ENST00000472527.1:n.96T>A
  variant of: http://identifiers.org/hgnc/28976
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5395
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4218
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2841
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3199
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5562
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4948
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5176
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4379
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3515
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3290
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2058
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2180
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3587
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5113
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3618
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1582
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1098
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1249
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45066
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Leu1089His
num of homozygotes: 0
population: Other
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
reference allele: T
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum

2-219618318-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 219618318
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 219618318
    reference: chr 2
allele count: 8
allele frequency: 6.589460158476517e-5
allele num: 121406
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000375951
  ensembl transcript: ENST00000392102
  gene symbol: TTLL4
  hgvsc: ENST00000392102.1:c.3270G>A
  hgvsp: ENST00000392102.1:c.3270G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000400068
  ensembl transcript: ENST00000417855
  gene symbol: TTLL4
  hgvsc: ENST00000417855.1:c.341G>A
  hgvsp: ENST00000417855.1:c.341G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000396555
  ensembl transcript: ENST00000442769
  gene symbol: TTLL4
  hgvsc: ENST00000442769.1:c.3078G>A
  hgvsp: ENST00000442769.1:c.3078G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000258398
  ensembl transcript: ENST00000258398
  gene symbol: TTLL4
  hgvsc: ENST00000258398.4:c.3270G>A
  hgvsp: ENST00000258398.4:c.3270G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135912
  ensembl transcript: ENST00000472527
  gene symbol: TTLL4
  hgvsc: ENST00000472527.1:n.100G>A
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000415845
  ensembl transcript: ENST00000436668
  gene symbol: TTLL4
  hgvsc: ENST00000436668.1:c.577G>A
  hgvsp: ENST00000436668.1:c.577G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000393332
  ensembl transcript: ENST00000457313
  gene symbol: TTLL4
  hgvsc: ENST00000457313.1:c.2775G>A
  hgvsp: ENST00000457313.1:c.2775G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28976
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2180
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4379
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5175
  bin: 9.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 2061
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4948
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4218
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5113
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3587
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3297
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5562
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5395
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3620
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2841
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3516
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3198
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1582
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4920
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1098
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1910
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Pro1090Pro
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Other
reference allele: G
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP

2-219618318-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 219618318
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 219618318
    reference: chr 2
allele count: 1
allele frequency: 8.236825198095647e-6
allele num: 121406
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000258398
  ensembl transcript: ENST00000258398
  gene symbol: TTLL4
  hgvsc: ENST00000258398.4:c.3270G>C
  hgvsp: ENST00000258398.4:c.3270G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000375951
  ensembl transcript: ENST00000392102
  gene symbol: TTLL4
  hgvsc: ENST00000392102.1:c.3270G>C
  hgvsp: ENST00000392102.1:c.3270G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000415845
  ensembl transcript: ENST00000436668
  gene symbol: TTLL4
  hgvsc: ENST00000436668.1:c.577G>C
  hgvsp: ENST00000436668.1:c.577G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000396555
  ensembl transcript: ENST00000442769
  gene symbol: TTLL4
  hgvsc: ENST00000442769.1:c.3078G>C
  hgvsp: ENST00000442769.1:c.3078G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135912
  ensembl transcript: ENST00000472527
  gene symbol: TTLL4
  hgvsc: ENST00000472527.1:n.100G>C
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000393332
  ensembl transcript: ENST00000457313
  gene symbol: TTLL4
  hgvsc: ENST00000457313.1:c.2775G>C
  hgvsp: ENST00000457313.1:c.2775G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000400068
  ensembl transcript: ENST00000417855
  gene symbol: TTLL4
  hgvsc: ENST00000417855.1:c.341G>C
  hgvsp: ENST00000417855.1:c.341G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/28976
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4218
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3297
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3587
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5113
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4379
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3620
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5562
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2841
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3516
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2061
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1582
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4948
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5395
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3198
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5175
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2180
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45068
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4920
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2008
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1098
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Pro1090Pro
num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Other
reference allele: G
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff

2-219618328-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 219618328
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 219618328
    reference: chr 2
allele count: 1
allele frequency: 8.236825198095647e-6
allele num: 121406
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000258398
  ensembl transcript: ENST00000258398
  gene symbol: TTLL4
  hgvsc: ENST00000258398.4:c.3280C>G
  hgvsp: ENSP00000258398.4:p.Leu1094Val
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000375951
  ensembl transcript: ENST00000392102
  gene symbol: TTLL4
  hgvsc: ENST00000392102.1:c.3280C>G
  hgvsp: ENSP00000375951.1:p.Leu1094Val
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000393332
  ensembl transcript: ENST00000457313
  gene symbol: TTLL4
  hgvsc: ENST00000457313.1:c.2785C>G
  hgvsp: ENSP00000393332.1:p.Leu929Val
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000400068
  ensembl transcript: ENST00000417855
  gene symbol: TTLL4
  hgvsc: ENST00000417855.1:c.351C>G
  hgvsp: ENSP00000400068.1:p.Leu118Val
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135912
  ensembl transcript: ENST00000472527
  gene symbol: TTLL4
  hgvsc: ENST00000472527.1:n.110C>G
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000415845
  ensembl transcript: ENST00000436668
  gene symbol: TTLL4
  hgvsc: ENST00000436668.1:c.587C>G
  hgvsp: ENSP00000415845.1:p.Leu197Val
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000396555
  ensembl transcript: ENST00000442769
  gene symbol: TTLL4
  hgvsc: ENST00000442769.1:c.3088C>G
  hgvsp: ENSP00000396555.1:p.Leu1030Val
  variant of: http://identifiers.org/hgnc/28976
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5168
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3619
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3199
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4949
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4219
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1582
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4379
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3590
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3517
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2061
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2841
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3304
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5396
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5564
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5114
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2180
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1911
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2009
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1253
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Leu1094Val
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Other
reference allele: C
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum

2-219618334-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 219618334
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 219618334
    reference: chr 2
allele count: 1
allele frequency: 8.236689509752241e-6
allele num: 121408
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000400068
  ensembl transcript: ENST00000417855
  gene symbol: TTLL4
  hgvsc: ENST00000417855.1:c.357A>G
  hgvsp: ENSP00000400068.1:p.Ile120Val
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000396555
  ensembl transcript: ENST00000442769
  gene symbol: TTLL4
  hgvsc: ENST00000442769.1:c.3094A>G
  hgvsp: ENSP00000396555.1:p.Ile1032Val
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000375951
  ensembl transcript: ENST00000392102
  gene symbol: TTLL4
  hgvsc: ENST00000392102.1:c.3286A>G
  hgvsp: ENSP00000375951.1:p.Ile1096Val
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000415845
  ensembl transcript: ENST00000436668
  gene symbol: TTLL4
  hgvsc: ENST00000436668.1:c.593A>G
  hgvsp: ENSP00000415845.1:p.Ile199Val
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000258398
  ensembl transcript: ENST00000258398
  gene symbol: TTLL4
  hgvsc: ENST00000258398.4:c.3286A>G
  hgvsp: ENSP00000258398.4:p.Ile1096Val
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135912
  ensembl transcript: ENST00000472527
  gene symbol: TTLL4
  hgvsc: ENST00000472527.1:n.116A>G
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000393332
  ensembl transcript: ENST00000457313
  gene symbol: TTLL4
  hgvsc: ENST00000457313.1:c.2791A>G
  hgvsp: ENSP00000393332.1:p.Ile931Val
  variant of: http://identifiers.org/hgnc/28976
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4219
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3517
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4379
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2061
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4949
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5114
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1582
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3594
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3619
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5564
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3304
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3200
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2180
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5396
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5167
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2842
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4925
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Ile1096Val
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Latino
population: African
population: Other
reference allele: A
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD

2-219618348-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 219618348
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 219618348
    reference: chr 2
allele count: 4
allele frequency: 3.294730079238259e-5
allele num: 121406
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000400068
  ensembl transcript: ENST00000417855
  gene symbol: TTLL4
  hgvsc: ENST00000417855.1:c.371C>T
  hgvsp: ENST00000417855.1:c.371C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000375951
  ensembl transcript: ENST00000392102
  gene symbol: TTLL4
  hgvsc: ENST00000392102.1:c.3300C>T
  hgvsp: ENST00000392102.1:c.3300C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000415845
  ensembl transcript: ENST00000436668
  gene symbol: TTLL4
  hgvsc: ENST00000436668.1:c.607C>T
  hgvsp: ENST00000436668.1:c.607C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135912
  ensembl transcript: ENST00000472527
  gene symbol: TTLL4
  hgvsc: ENST00000472527.1:n.130C>T
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000393332
  ensembl transcript: ENST00000457313
  gene symbol: TTLL4
  hgvsc: ENST00000457313.1:c.2805C>T
  hgvsp: ENST00000457313.1:c.2805C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000258398
  ensembl transcript: ENST00000258398
  gene symbol: TTLL4
  hgvsc: ENST00000258398.4:c.3300C>T
  hgvsp: ENST00000258398.4:c.3300C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000396555
  ensembl transcript: ENST00000442769
  gene symbol: TTLL4
  hgvsc: ENST00000442769.1:c.3108C>T
  hgvsp: ENST00000442769.1:c.3108C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28976
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5395
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4949
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3592
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4379
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3517
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2059
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4219
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3619
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5113
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5167
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1583
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3310
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5564
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2180
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3199
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2842
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2530
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1251
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1099
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Asp1100Asp
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: South Asian
population: Other
population: European (Non-Finnish)
population: East Asian
population: African
reference allele: C
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD

2-219618349-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 219618349
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 219618349
    reference: chr 2
allele count: 60
allele frequency: 4.942095118857388e-4
allele num: 121406
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000400068
  ensembl transcript: ENST00000417855
  gene symbol: TTLL4
  hgvsc: ENST00000417855.1:c.372G>A
  hgvsp: ENSP00000400068.1:p.Val125Met
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135912
  ensembl transcript: ENST00000472527
  gene symbol: TTLL4
  hgvsc: ENST00000472527.1:n.131G>A
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000375951
  ensembl transcript: ENST00000392102
  gene symbol: TTLL4
  hgvsc: ENST00000392102.1:c.3301G>A
  hgvsp: ENSP00000375951.1:p.Val1101Met
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000396555
  ensembl transcript: ENST00000442769
  gene symbol: TTLL4
  hgvsc: ENST00000442769.1:c.3109G>A
  hgvsp: ENSP00000396555.1:p.Val1037Met
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000258398
  ensembl transcript: ENST00000258398
  gene symbol: TTLL4
  hgvsc: ENST00000258398.4:c.3301G>A
  hgvsp: ENSP00000258398.4:p.Val1101Met
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000415845
  ensembl transcript: ENST00000436668
  gene symbol: TTLL4
  hgvsc: ENST00000436668.1:c.608G>A
  hgvsp: ENSP00000415845.1:p.Val204Met
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000393332
  ensembl transcript: ENST00000457313
  gene symbol: TTLL4
  hgvsc: ENST00000457313.1:c.2806G>A
  hgvsp: ENSP00000393332.1:p.Val936Met
  variant of: http://identifiers.org/hgnc/28976
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4218
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5114
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3517
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5394
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3298
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3202
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 5566
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1584
  bin: 9.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2184
  bin: 8.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 3592
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4951
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4379
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2844
  bin: 8.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2050
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3621
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5174
  bin: 9.75e1
  variant carriers: 40
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1099
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4916
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2525
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Val1101Met
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: South Asian
population: Other
population: African
population: Latino
reference allele: G
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: DP

2-219618358-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 219618358
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 219618358
    reference: chr 2
allele count: 1
allele frequency: 8.236689509752241e-6
allele num: 121408
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000400068
  ensembl transcript: ENST00000417855
  gene symbol: TTLL4
  hgvsc: ENST00000417855.1:c.381A>G
  hgvsp: ENSP00000400068.1:p.Asn128Asp
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000393332
  ensembl transcript: ENST00000457313
  gene symbol: TTLL4
  hgvsc: ENST00000457313.1:c.2815A>G
  hgvsp: ENSP00000393332.1:p.Asn939Asp
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000258398
  ensembl transcript: ENST00000258398
  gene symbol: TTLL4
  hgvsc: ENST00000258398.4:c.3310A>G
  hgvsp: ENSP00000258398.4:p.Asn1104Asp
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000415845
  ensembl transcript: ENST00000436668
  gene symbol: TTLL4
  hgvsc: ENST00000436668.1:c.617A>G
  hgvsp: ENSP00000415845.1:p.Asn207Asp
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000396555
  ensembl transcript: ENST00000442769
  gene symbol: TTLL4
  hgvsc: ENST00000442769.1:c.3118A>G
  hgvsp: ENSP00000396555.1:p.Asn1040Asp
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000375951
  ensembl transcript: ENST00000392102
  gene symbol: TTLL4
  hgvsc: ENST00000392102.1:c.3310A>G
  hgvsp: ENSP00000375951.1:p.Asn1104Asp
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135912
  ensembl transcript: ENST00000472527
  gene symbol: TTLL4
  hgvsc: ENST00000472527.1:n.140A>G
  variant of: http://identifiers.org/hgnc/28976
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1583
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3518
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4952
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5138
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3312
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2045
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4380
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2181
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3207
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5118
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5395
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2843
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5569
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4220
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3601
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3622
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1910
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1099
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Asn1104Asp
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
population: Other
population: East Asian
reference allele: A
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum

2-219618360-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 219618360
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 219618360
    reference: chr 2
allele count: 2
allele frequency: 1.647310765175851e-5
allele num: 121410
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000400068
  ensembl transcript: ENST00000417855
  gene symbol: TTLL4
  hgvsc: ENST00000417855.1:c.383T>C
  hgvsp: ENST00000417855.1:c.383T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000258398
  ensembl transcript: ENST00000258398
  gene symbol: TTLL4
  hgvsc: ENST00000258398.4:c.3312T>C
  hgvsp: ENST00000258398.4:c.3312T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135912
  ensembl transcript: ENST00000472527
  gene symbol: TTLL4
  hgvsc: ENST00000472527.1:n.142T>C
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000393332
  ensembl transcript: ENST00000457313
  gene symbol: TTLL4
  hgvsc: ENST00000457313.1:c.2817T>C
  hgvsp: ENST00000457313.1:c.2817T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000375951
  ensembl transcript: ENST00000392102
  gene symbol: TTLL4
  hgvsc: ENST00000392102.1:c.3312T>C
  hgvsp: ENST00000392102.1:c.3312T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000415845
  ensembl transcript: ENST00000436668
  gene symbol: TTLL4
  hgvsc: ENST00000436668.1:c.619T>C
  hgvsp: ENST00000436668.1:c.619T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000396555
  ensembl transcript: ENST00000442769
  gene symbol: TTLL4
  hgvsc: ENST00000442769.1:c.3120T>C
  hgvsp: ENST00000442769.1:c.3120T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/28976
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4380
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5395
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3600
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3206
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3310
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2843
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3518
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4220
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2047
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5569
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5118
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5137
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1583
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4953
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3622
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2181
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1910
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4937
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2533
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Asn1104Asn
num of homozygotes: 0
population: African
population: Other
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: T
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ

2-219618382-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 219618382
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 219618382
    reference: chr 2
allele count: 239
allele frequency: 1.968666084578508e-3
allele num: 121402
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000375951
  ensembl transcript: ENST00000392102
  gene symbol: TTLL4
  hgvsc: ENST00000392102.1:c.3334A>G
  hgvsp: ENSP00000375951.1:p.Ser1112Gly
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000415845
  ensembl transcript: ENST00000436668
  gene symbol: TTLL4
  hgvsc: ENST00000436668.1:c.641A>G
  hgvsp: ENSP00000415845.1:p.Ser215Gly
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000258398
  ensembl transcript: ENST00000258398
  gene symbol: TTLL4
  hgvsc: ENST00000258398.4:c.3334A>G
  hgvsp: ENSP00000258398.4:p.Ser1112Gly
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000396555
  ensembl transcript: ENST00000442769
  gene symbol: TTLL4
  hgvsc: ENST00000442769.1:c.3142A>G
  hgvsp: ENSP00000396555.1:p.Ser1048Gly
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000400068
  ensembl transcript: ENST00000417855
  gene symbol: TTLL4
  hgvsc: ENST00000417855.1:c.405A>G
  hgvsp: ENSP00000400068.1:p.Ser136Gly
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000393332
  ensembl transcript: ENST00000457313
  gene symbol: TTLL4
  hgvsc: ENST00000457313.1:c.2839A>G
  hgvsp: ENSP00000393332.1:p.Ser947Gly
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135912
  ensembl transcript: ENST00000472527
  gene symbol: TTLL4
  hgvsc: ENST00000472527.1:n.164A>G
  variant of: http://identifiers.org/hgnc/28976
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3303
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3597
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3519
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1584
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3621
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5571
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2028
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5118
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3207
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4220
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4953
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2844
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4381
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5395
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2180
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5138
  bin: 9.75e1
  variant carriers: 226
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4920
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1246
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2009
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Ser1112Gly
num of homozygotes: 1
population: African
population: Latino
population: Other
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: A
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: QD

2-219618386-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 219618386
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 219618386
    reference: chr 2
allele count: 1
allele frequency: 8.237096588194593e-6
allele num: 121402
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135912
  ensembl transcript: ENST00000472527
  gene symbol: TTLL4
  hgvsc: ENST00000472527.1:n.168A>T
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000375951
  ensembl transcript: ENST00000392102
  gene symbol: TTLL4
  hgvsc: ENST00000392102.1:c.3338A>T
  hgvsp: ENSP00000375951.1:p.Lys1113Met
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000393332
  ensembl transcript: ENST00000457313
  gene symbol: TTLL4
  hgvsc: ENST00000457313.1:c.2843A>T
  hgvsp: ENSP00000393332.1:p.Lys948Met
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000400068
  ensembl transcript: ENST00000417855
  gene symbol: TTLL4
  hgvsc: ENST00000417855.1:c.409A>T
  hgvsp: ENSP00000400068.1:p.Lys137Met
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000258398
  ensembl transcript: ENST00000258398
  gene symbol: TTLL4
  hgvsc: ENST00000258398.4:c.3338A>T
  hgvsp: ENSP00000258398.4:p.Lys1113Met
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000415845
  ensembl transcript: ENST00000436668
  gene symbol: TTLL4
  hgvsc: ENST00000436668.1:c.645A>T
  hgvsp: ENSP00000415845.1:p.Lys216Met
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000396555
  ensembl transcript: ENST00000442769
  gene symbol: TTLL4
  hgvsc: ENST00000442769.1:c.3146A>T
  hgvsp: ENSP00000396555.1:p.Lys1049Met
  variant of: http://identifiers.org/hgnc/28976
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2019
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5590
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4397
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1582
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3303
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3605
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3220
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4251
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5438
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2179
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3542
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4921
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3630
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4975
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2849
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5146
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4908
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44996
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1247
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1918
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Lys1113Met
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: A
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum

2-219618397-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 219618397
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 219618397
    reference: chr 2
allele count: 1
allele frequency: 8.238046594391538e-6
allele num: 121388
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000415845
  ensembl transcript: ENST00000436668
  gene symbol: TTLL4
  hgvsc: ENST00000436668.1:c.651+5G>A
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000393332
  ensembl transcript: ENST00000457313
  gene symbol: TTLL4
  hgvsc: ENST00000457313.1:c.2849+5G>A
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135912
  ensembl transcript: ENST00000472527
  gene symbol: TTLL4
  hgvsc: ENST00000472527.1:n.174+5G>A
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000396555
  ensembl transcript: ENST00000442769
  gene symbol: TTLL4
  hgvsc: ENST00000442769.1:c.3152+5G>A
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000375951
  ensembl transcript: ENST00000392102
  gene symbol: TTLL4
  hgvsc: ENST00000392102.1:c.3344+5G>A
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000258398
  ensembl transcript: ENST00000258398
  gene symbol: TTLL4
  hgvsc: ENST00000258398.4:c.3344+5G>A
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000400068
  ensembl transcript: ENST00000417855
  gene symbol: TTLL4
  hgvsc: ENST00000417855.1:c.415+5G>A
  variant of: http://identifiers.org/hgnc/28976
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5590
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3581
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2180
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4975
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3220
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4397
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3630
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2012
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3294
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2849
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3539
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5147
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1582
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5438
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4920
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4251
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2014
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1104
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 4.75e1
  variant carriers: 0
hgvs: c.3344+5G>A
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
population: Other
population: South Asian
population: East Asian
reference allele: G
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: DP

2-219618401-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 219618401
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 219618401
    reference: chr 2
allele count: 8
allele frequency: 6.590654451987082e-5
allele num: 121384
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000375951
  ensembl transcript: ENST00000392102
  gene symbol: TTLL4
  hgvsc: ENST00000392102.1:c.3344+9T>G
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000396555
  ensembl transcript: ENST00000442769
  gene symbol: TTLL4
  hgvsc: ENST00000442769.1:c.3152+9T>G
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000393332
  ensembl transcript: ENST00000457313
  gene symbol: TTLL4
  hgvsc: ENST00000457313.1:c.2849+9T>G
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135912
  ensembl transcript: ENST00000472527
  gene symbol: TTLL4
  hgvsc: ENST00000472527.1:n.174+9T>G
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000415845
  ensembl transcript: ENST00000436668
  gene symbol: TTLL4
  hgvsc: ENST00000436668.1:c.651+9T>G
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000258398
  ensembl transcript: ENST00000258398
  gene symbol: TTLL4
  hgvsc: ENST00000258398.4:c.3344+9T>G
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000400068
  ensembl transcript: ENST00000417855
  gene symbol: TTLL4
  hgvsc: ENST00000417855.1:c.415+9T>G
  variant of: http://identifiers.org/hgnc/28976
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2850
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5440
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4249
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3536
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3213
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4919
  bin: 9.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 5589
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1582
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2180
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4974
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1996
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3583
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3306
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3630
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5146
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4397
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4841
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1913
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2496
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum

2-219618403-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 219618403
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 219618403
    reference: chr 2
allele count: 27
allele frequency: 2.224455832193643e-4
allele num: 121378
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135912
  ensembl transcript: ENST00000472527
  gene symbol: TTLL4
  hgvsc: ENST00000472527.1:n.174+11C>T
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000393332
  ensembl transcript: ENST00000457313
  gene symbol: TTLL4
  hgvsc: ENST00000457313.1:c.2849+11C>T
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000396555
  ensembl transcript: ENST00000442769
  gene symbol: TTLL4
  hgvsc: ENST00000442769.1:c.3152+11C>T
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000258398
  ensembl transcript: ENST00000258398
  gene symbol: TTLL4
  hgvsc: ENST00000258398.4:c.3344+11C>T
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000400068
  ensembl transcript: ENST00000417855
  gene symbol: TTLL4
  hgvsc: ENST00000417855.1:c.415+11C>T
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000415845
  ensembl transcript: ENST00000436668
  gene symbol: TTLL4
  hgvsc: ENST00000436668.1:c.651+11C>T
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000375951
  ensembl transcript: ENST00000392102
  gene symbol: TTLL4
  hgvsc: ENST00000392102.1:c.3344+11C>T
  variant of: http://identifiers.org/hgnc/28976
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3209
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2850
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5439
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4974
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4910
  bin: 9.75e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 3537
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3632
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1583
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5147
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4250
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1981
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3586
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3312
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5590
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2183
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4397
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2015
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2492
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1104
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1909
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1231
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Other
population: African
population: Latino
population: South Asian
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: DP

2-219618407-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 219618407
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 219618407
    reference: chr 2
allele count: 2
allele frequency: 1.647799363949445e-5
allele num: 121374
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135912
  ensembl transcript: ENST00000472527
  gene symbol: TTLL4
  hgvsc: ENST00000472527.1:n.174+15G>A
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000415845
  ensembl transcript: ENST00000436668
  gene symbol: TTLL4
  hgvsc: ENST00000436668.1:c.651+15G>A
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000258398
  ensembl transcript: ENST00000258398
  gene symbol: TTLL4
  hgvsc: ENST00000258398.4:c.3344+15G>A
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000375951
  ensembl transcript: ENST00000392102
  gene symbol: TTLL4
  hgvsc: ENST00000392102.1:c.3344+15G>A
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000396555
  ensembl transcript: ENST00000442769
  gene symbol: TTLL4
  hgvsc: ENST00000442769.1:c.3152+15G>A
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000400068
  ensembl transcript: ENST00000417855
  gene symbol: TTLL4
  hgvsc: ENST00000417855.1:c.415+15G>A
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000393332
  ensembl transcript: ENST00000457313
  gene symbol: TTLL4
  hgvsc: ENST00000457313.1:c.2849+15G>A
  variant of: http://identifiers.org/hgnc/28976
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5149
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1959
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1580
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3289
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5439
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3210
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3540
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4253
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4977
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2182
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4401
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5592
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3631
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3586
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2852
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4891
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2486
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1104
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1229
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1912
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4809
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
reference allele: G
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: DP

2-219618408-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 219618408
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 219618408
    reference: chr 2
allele count: 1
allele frequency: 8.239404126293587e-6
allele num: 121368
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000415845
  ensembl transcript: ENST00000436668
  gene symbol: TTLL4
  hgvsc: ENST00000436668.1:c.651+16G>A
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000396555
  ensembl transcript: ENST00000442769
  gene symbol: TTLL4
  hgvsc: ENST00000442769.1:c.3152+16G>A
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000375951
  ensembl transcript: ENST00000392102
  gene symbol: TTLL4
  hgvsc: ENST00000392102.1:c.3344+16G>A
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000400068
  ensembl transcript: ENST00000417855
  gene symbol: TTLL4
  hgvsc: ENST00000417855.1:c.415+16G>A
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000393332
  ensembl transcript: ENST00000457313
  gene symbol: TTLL4
  hgvsc: ENST00000457313.1:c.2849+16G>A
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135912
  ensembl transcript: ENST00000472527
  gene symbol: TTLL4
  hgvsc: ENST00000472527.1:n.174+16G>A
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000258398
  ensembl transcript: ENST00000258398
  gene symbol: TTLL4
  hgvsc: ENST00000258398.4:c.3344+16G>A
  variant of: http://identifiers.org/hgnc/28976
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3211
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5439
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4401
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4254
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3291
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3632
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2852
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2182
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3586
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4977
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5150
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3539
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1580
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5592
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4889
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1956
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1914
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1104
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2486
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
population: European (Finnish)
population: African
population: South Asian
reference allele: G
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum

2-219618409-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 219618409
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 219618409
    reference: chr 2
allele count: 1
allele frequency: 8.240354664864776e-6
allele num: 121354
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000400068
  ensembl transcript: ENST00000417855
  gene symbol: TTLL4
  hgvsc: ENST00000417855.1:c.415+17C>T
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135912
  ensembl transcript: ENST00000472527
  gene symbol: TTLL4
  hgvsc: ENST00000472527.1:n.174+17C>T
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000415845
  ensembl transcript: ENST00000436668
  gene symbol: TTLL4
  hgvsc: ENST00000436668.1:c.651+17C>T
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000258398
  ensembl transcript: ENST00000258398
  gene symbol: TTLL4
  hgvsc: ENST00000258398.4:c.3344+17C>T
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000375951
  ensembl transcript: ENST00000392102
  gene symbol: TTLL4
  hgvsc: ENST00000392102.1:c.3344+17C>T
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000393332
  ensembl transcript: ENST00000457313
  gene symbol: TTLL4
  hgvsc: ENST00000457313.1:c.2849+17C>T
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000396555
  ensembl transcript: ENST00000442769
  gene symbol: TTLL4
  hgvsc: ENST00000442769.1:c.3152+17C>T
  variant of: http://identifiers.org/hgnc/28976
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4401
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3211
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3292
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3632
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4254
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5592
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3588
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1946
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5152
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2853
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1580
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4977
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4888
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5439
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2182
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3543
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1104
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2482
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44986
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1228
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: African
population: European (Finnish)
population: Other
reference allele: C
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: DP

2-219618417-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 219618417
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 219618417
    reference: chr 2
allele count: 1
allele frequency: 8.241848811525402e-6
allele num: 121332
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000396555
  ensembl transcript: ENST00000442769
  gene symbol: TTLL4
  hgvsc: ENST00000442769.1:c.3152+25G>A
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000415845
  ensembl transcript: ENST00000436668
  gene symbol: TTLL4
  hgvsc: ENST00000436668.1:c.651+25G>A
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000393332
  ensembl transcript: ENST00000457313
  gene symbol: TTLL4
  hgvsc: ENST00000457313.1:c.2849+25G>A
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000375951
  ensembl transcript: ENST00000392102
  gene symbol: TTLL4
  hgvsc: ENST00000392102.1:c.3344+25G>A
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135912
  ensembl transcript: ENST00000472527
  gene symbol: TTLL4
  hgvsc: ENST00000472527.1:n.174+25G>A
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000400068
  ensembl transcript: ENST00000417855
  gene symbol: TTLL4
  hgvsc: ENST00000417855.1:c.415+25G>A
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000258398
  ensembl transcript: ENST00000258398
  gene symbol: TTLL4
  hgvsc: ENST00000258398.4:c.3344+25G>A
  variant of: http://identifiers.org/hgnc/28976
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4975
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5591
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3560
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3210
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2181
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1580
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3276
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5440
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4243
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5148
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3630
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3542
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4888
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4402
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2853
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1850
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1104
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4687
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1999
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
population: Other
reference allele: G
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum

2-219618422-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 219618422
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 219618422
    reference: chr 2
allele count: 2
allele frequency: 1.648723063986942e-5
allele num: 121306
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000400068
  ensembl transcript: ENST00000417855
  gene symbol: TTLL4
  hgvsc: ENST00000417855.1:c.415+30G>T
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000396555
  ensembl transcript: ENST00000442769
  gene symbol: TTLL4
  hgvsc: ENST00000442769.1:c.3152+30G>T
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000393332
  ensembl transcript: ENST00000457313
  gene symbol: TTLL4
  hgvsc: ENST00000457313.1:c.2849+30G>T
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000258398
  ensembl transcript: ENST00000258398
  gene symbol: TTLL4
  hgvsc: ENST00000258398.4:c.3344+30G>T
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135912
  ensembl transcript: ENST00000472527
  gene symbol: TTLL4
  hgvsc: ENST00000472527.1:n.174+30G>T
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000375951
  ensembl transcript: ENST00000392102
  gene symbol: TTLL4
  hgvsc: ENST00000392102.1:c.3344+30G>T
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000415845
  ensembl transcript: ENST00000436668
  gene symbol: TTLL4
  hgvsc: ENST00000436668.1:c.651+30G>T
  variant of: http://identifiers.org/hgnc/28976
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4976
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5436
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4399
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3538
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2852
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3209
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3631
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3539
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4244
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1799
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3208
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4888
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2181
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1580
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5586
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5153
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1905
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1210
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 148
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2419
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: Other
population: South Asian
population: European (Finnish)
population: East Asian
reference allele: G
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum

2-219618431-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 219618431
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 219618431
    reference: chr 2
allele count: 1
allele frequency: 8.248647221855616e-6
allele num: 121232
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000258398
  ensembl transcript: ENST00000258398
  gene symbol: TTLL4
  hgvsc: ENST00000258398.4:c.3344+39G>T
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000393332
  ensembl transcript: ENST00000457313
  gene symbol: TTLL4
  hgvsc: ENST00000457313.1:c.2849+39G>T
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000400068
  ensembl transcript: ENST00000417855
  gene symbol: TTLL4
  hgvsc: ENST00000417855.1:c.415+39G>T
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135912
  ensembl transcript: ENST00000472527
  gene symbol: TTLL4
  hgvsc: ENST00000472527.1:n.174+39G>T
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000415845
  ensembl transcript: ENST00000436668
  gene symbol: TTLL4
  hgvsc: ENST00000436668.1:c.651+39G>T
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000396555
  ensembl transcript: ENST00000442769
  gene symbol: TTLL4
  hgvsc: ENST00000442769.1:c.3152+39G>T
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000375951
  ensembl transcript: ENST00000392102
  gene symbol: TTLL4
  hgvsc: ENST00000392102.1:c.3344+39G>T
  variant of: http://identifiers.org/hgnc/28976
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2891
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4976
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3139
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3401
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4883
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5579
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2848
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4216
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5128
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2179
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3492
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3629
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 699
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4398
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5431
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1943
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1580
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 219
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1154
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 339
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 209
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2144
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 272
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 271
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1908
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 162
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
population: African
population: South Asian
population: Other
reference allele: G
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum

2-219618433-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 219618433
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 219618433
    reference: chr 2
allele count: 1
allele frequency: 8.251233559417133e-6
allele num: 121194
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000258398
  ensembl transcript: ENST00000258398
  gene symbol: TTLL4
  hgvsc: ENST00000258398.4:c.3344+41G>A
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000375951
  ensembl transcript: ENST00000392102
  gene symbol: TTLL4
  hgvsc: ENST00000392102.1:c.3344+41G>A
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000396555
  ensembl transcript: ENST00000442769
  gene symbol: TTLL4
  hgvsc: ENST00000442769.1:c.3152+41G>A
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000400068
  ensembl transcript: ENST00000417855
  gene symbol: TTLL4
  hgvsc: ENST00000417855.1:c.415+41G>A
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000415845
  ensembl transcript: ENST00000436668
  gene symbol: TTLL4
  hgvsc: ENST00000436668.1:c.651+41G>A
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135912
  ensembl transcript: ENST00000472527
  gene symbol: TTLL4
  hgvsc: ENST00000472527.1:n.174+41G>A
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000393332
  ensembl transcript: ENST00000457313
  gene symbol: TTLL4
  hgvsc: ENST00000457313.1:c.2849+41G>A
  variant of: http://identifiers.org/hgnc/28976
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2905
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5572
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1581
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3628
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 699
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3409
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1942
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5129
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3131
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4974
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4397
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3489
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4211
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2179
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5431
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2846
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4882
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3735
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 353
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 161
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 271
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 216
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 357
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: Other
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum

2-219618435-TTG-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 219618435
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 219618433
    reference: chr 2
allele count: 2
allele frequency: 1.650927821435647e-5
allele num: 121144
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000393332
  ensembl transcript: ENST00000457313
  gene symbol: TTLL4
  hgvsc: ENST00000457313.1:c.2849+45_2849+46delGT
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000375951
  ensembl transcript: ENST00000392102
  gene symbol: TTLL4
  hgvsc: ENST00000392102.1:c.3344+45_3344+46delGT
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000415845
  ensembl transcript: ENST00000436668
  gene symbol: TTLL4
  hgvsc: ENST00000436668.1:c.651+45_651+46delGT
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000400068
  ensembl transcript: ENST00000417855
  gene symbol: TTLL4
  hgvsc: ENST00000417855.1:c.415+45_415+46delGT
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135912
  ensembl transcript: ENST00000472527
  gene symbol: TTLL4
  hgvsc: ENST00000472527.1:n.174+45_174+46delGT
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000258398
  ensembl transcript: ENST00000258398
  gene symbol: TTLL4
  hgvsc: ENST00000258398.4:c.3344+45_3344+46delGT
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000396555
  ensembl transcript: ENST00000442769
  gene symbol: TTLL4
  hgvsc: ENST00000442769.1:c.3152+45_3152+46delGT
  variant of: http://identifiers.org/hgnc/28976
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 708
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4191
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5430
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4396
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2178
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2024
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5569
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4972
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3137
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3356
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3626
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2846
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2913
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5124
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4881
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1582
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3471
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1890
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 240
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 169
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 275
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 368
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3612
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1145
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1078
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
reference allele: TTG
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: DP

2-219618440-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 219618440
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 219618440
    reference: chr 2
allele count: 1
allele frequency: 8.255456856982466e-6
allele num: 121132
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000258398
  ensembl transcript: ENST00000258398
  gene symbol: TTLL4
  hgvsc: ENST00000258398.4:c.3344+48G>A
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135912
  ensembl transcript: ENST00000472527
  gene symbol: TTLL4
  hgvsc: ENST00000472527.1:n.174+48G>A
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000400068
  ensembl transcript: ENST00000417855
  gene symbol: TTLL4
  hgvsc: ENST00000417855.1:c.415+48G>A
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000396555
  ensembl transcript: ENST00000442769
  gene symbol: TTLL4
  hgvsc: ENST00000442769.1:c.3152+48G>A
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000375951
  ensembl transcript: ENST00000392102
  gene symbol: TTLL4
  hgvsc: ENST00000392102.1:c.3344+48G>A
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000393332
  ensembl transcript: ENST00000457313
  gene symbol: TTLL4
  hgvsc: ENST00000457313.1:c.2849+48G>A
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000415845
  ensembl transcript: ENST00000436668
  gene symbol: TTLL4
  hgvsc: ENST00000436668.1:c.651+48G>A
  variant of: http://identifiers.org/hgnc/28976
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4968
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3239
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 707
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3626
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2192
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3091
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5115
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3475
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4174
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4881
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2956
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5420
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4396
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1580
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2178
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2843
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5555
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 307
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3290
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 216
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 424
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 521
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1846
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 405
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
population: South Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: MQRankSum

2-219618440-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 219618440
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 219618440
    reference: chr 2
allele count: 1
allele frequency: 8.255456856982466e-6
allele num: 121132
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000375951
  ensembl transcript: ENST00000392102
  gene symbol: TTLL4
  hgvsc: ENST00000392102.1:c.3344+48G>C
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000400068
  ensembl transcript: ENST00000417855
  gene symbol: TTLL4
  hgvsc: ENST00000417855.1:c.415+48G>C
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000393332
  ensembl transcript: ENST00000457313
  gene symbol: TTLL4
  hgvsc: ENST00000457313.1:c.2849+48G>C
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000415845
  ensembl transcript: ENST00000436668
  gene symbol: TTLL4
  hgvsc: ENST00000436668.1:c.651+48G>C
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000396555
  ensembl transcript: ENST00000442769
  gene symbol: TTLL4
  hgvsc: ENST00000442769.1:c.3152+48G>C
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135912
  ensembl transcript: ENST00000472527
  gene symbol: TTLL4
  hgvsc: ENST00000472527.1:n.174+48G>C
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000258398
  ensembl transcript: ENST00000258398
  gene symbol: TTLL4
  hgvsc: ENST00000258398.4:c.3344+48G>C
  variant of: http://identifiers.org/hgnc/28976
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2178
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2192
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1580
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2956
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3091
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3475
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3239
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5420
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5115
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4174
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3626
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2843
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4881
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4396
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 707
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4968
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5555
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3290
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1084
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 288
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1907
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 424
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1137
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
population: Latino
reference allele: G
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum

2-219618442-GT-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 219618442
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 219618441
    reference: chr 2
allele count: 2
allele frequency: 1.65128222064433e-5
allele num: 121118
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000396555
  ensembl transcript: ENST00000442769
  gene symbol: TTLL4
  hgvsc: ENST00000442769.1:c.3152+54delT
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000415845
  ensembl transcript: ENST00000436668
  gene symbol: TTLL4
  hgvsc: ENST00000436668.1:c.651+54delT
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000393332
  ensembl transcript: ENST00000457313
  gene symbol: TTLL4
  hgvsc: ENST00000457313.1:c.2849+54delT
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000375951
  ensembl transcript: ENST00000392102
  gene symbol: TTLL4
  hgvsc: ENST00000392102.1:c.3344+54delT
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135912
  ensembl transcript: ENST00000472527
  gene symbol: TTLL4
  hgvsc: ENST00000472527.1:n.174+54delT
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000258398
  ensembl transcript: ENST00000258398
  gene symbol: TTLL4
  hgvsc: ENST00000258398.4:c.3344+54delT
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000400068
  ensembl transcript: ENST00000417855
  gene symbol: TTLL4
  hgvsc: ENST00000417855.1:c.415+54delT
  variant of: http://identifiers.org/hgnc/28976
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2215
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5549
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3069
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3626
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5419
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4160
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5118
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3016
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 705
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3464
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4881
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3206
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2177
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4969
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2843
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4395
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1580
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 592
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 448
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 152
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44925
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1076
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 180
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 316
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1853
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: GT
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: QD

2-219618807-C-CG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 219618807
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 219618808
    reference: chr 2
allele count: 1
allele frequency: 8.289262089888757e-6
allele num: 120638
alternate allele: CG
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135912
  ensembl transcript: ENST00000472527
  gene symbol: TTLL4
  hgvsc: ENST00000472527.1:n.175-50_175-49insG
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000396555
  ensembl transcript: ENST00000442769
  gene symbol: TTLL4
  hgvsc: ENST00000442769.1:c.3153-50_3153-49insG
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000415845
  ensembl transcript: ENST00000436668
  gene symbol: TTLL4
  hgvsc: ENST00000436668.1:c.652-50_652-49insG
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000400068
  ensembl transcript: ENST00000417855
  gene symbol: TTLL4
  hgvsc: ENST00000417855.1:c.416-147_416-146insG
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000375951
  ensembl transcript: ENST00000392102
  gene symbol: TTLL4
  hgvsc: ENST00000392102.1:c.3345-50_3345-49insG
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000393332
  ensembl transcript: ENST00000457313
  gene symbol: TTLL4
  hgvsc: ENST00000457313.1:c.2850-147_2850-146insG
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000258398
  ensembl transcript: ENST00000258398
  gene symbol: TTLL4
  hgvsc: ENST00000258398.4:c.3345-50_3345-49insG
  variant of: http://identifiers.org/hgnc/28976
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5791
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5776
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3845
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1232
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 904
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3923
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6598
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6512
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2355
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4486
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1783
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1241
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3513
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1826
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4651
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2778
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2559
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 284
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 530
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 369
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 676
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 368
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1907
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP

2-219618811-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 219618811
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 219618811
    reference: chr 2
allele count: 5
allele frequency: 4.142021637921037e-5
allele num: 120714
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000258398
  ensembl transcript: ENST00000258398
  gene symbol: TTLL4
  hgvsc: ENST00000258398.4:c.3345-46G>A
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000415845
  ensembl transcript: ENST00000436668
  gene symbol: TTLL4
  hgvsc: ENST00000436668.1:c.652-46G>A
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000393332
  ensembl transcript: ENST00000457313
  gene symbol: TTLL4
  hgvsc: ENST00000457313.1:c.2850-143G>A
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000396555
  ensembl transcript: ENST00000442769
  gene symbol: TTLL4
  hgvsc: ENST00000442769.1:c.3153-46G>A
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000400068
  ensembl transcript: ENST00000417855
  gene symbol: TTLL4
  hgvsc: ENST00000417855.1:c.416-143G>A
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000375951
  ensembl transcript: ENST00000392102
  gene symbol: TTLL4
  hgvsc: ENST00000392102.1:c.3345-46G>A
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135912
  ensembl transcript: ENST00000472527
  gene symbol: TTLL4
  hgvsc: ENST00000472527.1:n.175-46G>A
  variant of: http://identifiers.org/hgnc/28976
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3898
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2777
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1241
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1458
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6597
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 904
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1202
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3922
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6513
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4485
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2710
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4652
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3513
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1783
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5791
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5774
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2559
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 639
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 340
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 569
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 511
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 402
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1150
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 277
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1893
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5892
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
population: South Asian
population: Latino
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum

2-219618813-T-TAAACAGGGTCTCAGTC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 219618813
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 219618829
    reference: chr 2
allele count: 1
allele frequency: 8.283082632032337e-6
allele num: 120728
alternate allele: TAAACAGGGTCTCAGTC
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135912
  ensembl transcript: ENST00000472527
  gene symbol: TTLL4
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000375951
  ensembl transcript: ENST00000392102
  gene symbol: TTLL4
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000258398
  ensembl transcript: ENST00000258398
  gene symbol: TTLL4
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000400068
  ensembl transcript: ENST00000417855
  gene symbol: TTLL4
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000396555
  ensembl transcript: ENST00000442769
  gene symbol: TTLL4
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000393332
  ensembl transcript: ENST00000457313
  gene symbol: TTLL4
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000415845
  ensembl transcript: ENST00000436668
  gene symbol: TTLL4
  variant of: http://identifiers.org/hgnc/28976
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2973
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6513
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1175
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3925
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5774
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2559
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3513
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6598
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 904
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3937
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1179
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5792
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4488
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1783
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2774
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4652
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1241
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 213
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40271
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 497
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 311
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 606
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 254
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2569
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6321
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: T
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: DP
site quality: MQRankSum

2-219618819-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 219618819
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 219618819
    reference: chr 2
allele count: 1
allele frequency: 8.27787159365584e-6
allele num: 120804
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135912
  ensembl transcript: ENST00000472527
  gene symbol: TTLL4
  hgvsc: ENST00000472527.1:n.175-38G>C
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000393332
  ensembl transcript: ENST00000457313
  gene symbol: TTLL4
  hgvsc: ENST00000457313.1:c.2850-135G>C
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000258398
  ensembl transcript: ENST00000258398
  gene symbol: TTLL4
  hgvsc: ENST00000258398.4:c.3345-38G>C
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000375951
  ensembl transcript: ENST00000392102
  gene symbol: TTLL4
  hgvsc: ENST00000392102.1:c.3345-38G>C
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000396555
  ensembl transcript: ENST00000442769
  gene symbol: TTLL4
  hgvsc: ENST00000442769.1:c.3153-38G>C
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000400068
  ensembl transcript: ENST00000417855
  gene symbol: TTLL4
  hgvsc: ENST00000417855.1:c.416-135G>C
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000415845
  ensembl transcript: ENST00000436668
  gene symbol: TTLL4
  hgvsc: ENST00000436668.1:c.652-38G>C
  variant of: http://identifiers.org/hgnc/28976
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3513
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 600
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3617
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5775
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3945
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4489
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2559
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6598
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4120
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 931
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4653
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6512
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5792
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2773
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 904
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1241
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1783
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1162
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 195
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 421
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 409
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2331
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 387
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: Other
population: African
population: East Asian
population: South Asian
reference allele: G
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: ClippingRankSum

2-219618821-GTCTCAGTCATTTCTTTCACCACCTA-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 219618821
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 219618796
    reference: chr 2
allele count: 1
allele frequency: 8.275405494869249e-6
allele num: 120840
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000415845
  ensembl transcript: ENST00000436668
  gene symbol: TTLL4
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000396555
  ensembl transcript: ENST00000442769
  gene symbol: TTLL4
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000400068
  ensembl transcript: ENST00000417855
  gene symbol: TTLL4
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000258398
  ensembl transcript: ENST00000258398
  gene symbol: TTLL4
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135912
  ensembl transcript: ENST00000472527
  gene symbol: TTLL4
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000393332
  ensembl transcript: ENST00000457313
  gene symbol: TTLL4
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000375951
  ensembl transcript: ENST00000392102
  gene symbol: TTLL4
  variant of: http://identifiers.org/hgnc/28976
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 6598
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3810
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4175
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3513
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3951
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5776
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 816
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6512
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 904
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2559
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2772
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4653
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1783
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5792
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1241
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4490
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 209
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 378
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 159
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 340
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2075
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40270
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
population: South Asian
reference allele: GTCTCAGTCATTTCTTTCACCACCTA
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD

2-219618837-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 219618837
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 219618837
    reference: chr 2
allele count: 1
allele frequency: 8.254230293025175e-6
allele num: 121150
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000396555
  ensembl transcript: ENST00000442769
  gene symbol: TTLL4
  hgvsc: ENST00000442769.1:c.3153-20T>G
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135912
  ensembl transcript: ENST00000472527
  gene symbol: TTLL4
  hgvsc: ENST00000472527.1:n.175-20T>G
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000393332
  ensembl transcript: ENST00000457313
  gene symbol: TTLL4
  hgvsc: ENST00000457313.1:c.2850-117T>G
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000400068
  ensembl transcript: ENST00000417855
  gene symbol: TTLL4
  hgvsc: ENST00000417855.1:c.416-117T>G
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000415845
  ensembl transcript: ENST00000436668
  gene symbol: TTLL4
  hgvsc: ENST00000436668.1:c.652-20T>G
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000258398
  ensembl transcript: ENST00000258398
  gene symbol: TTLL4
  hgvsc: ENST00000258398.4:c.3345-20T>G
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000375951
  ensembl transcript: ENST00000392102
  gene symbol: TTLL4
  hgvsc: ENST00000392102.1:c.3345-20T>G
  variant of: http://identifiers.org/hgnc/28976
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4534
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5777
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 904
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3513
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4498
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6512
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5793
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1241
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2559
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4653
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4566
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2772
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1783
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4021
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6596
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1272
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2455
  bin: 6.75e1
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genotype quality: GenotypeQuality
  all individuals: 3
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8512
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 158
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genotype quality: GenotypeQuality
  all individuals: 50
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40271
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: South Asian
population: Latino
population: African
population: Other
reference allele: T
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: BaseQRankSum

2-219618840-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 219618840
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 219618840
    reference: chr 2
allele count: 1
allele frequency: 8.25082508250825e-6
allele num: 121200
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000396555
  ensembl transcript: ENST00000442769
  gene symbol: TTLL4
  hgvsc: ENST00000442769.1:c.3153-17C>T
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000375951
  ensembl transcript: ENST00000392102
  gene symbol: TTLL4
  hgvsc: ENST00000392102.1:c.3345-17C>T
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000415845
  ensembl transcript: ENST00000436668
  gene symbol: TTLL4
  hgvsc: ENST00000436668.1:c.652-17C>T
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000258398
  ensembl transcript: ENST00000258398
  gene symbol: TTLL4
  hgvsc: ENST00000258398.4:c.3345-17C>T
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000393332
  ensembl transcript: ENST00000457313
  gene symbol: TTLL4
  hgvsc: ENST00000457313.1:c.2850-114C>T
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135912
  ensembl transcript: ENST00000472527
  gene symbol: TTLL4
  hgvsc: ENST00000472527.1:n.175-17C>T
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000400068
  ensembl transcript: ENST00000417855
  gene symbol: TTLL4
  hgvsc: ENST00000417855.1:c.416-114C>T
  variant of: http://identifiers.org/hgnc/28976
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4630
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4053
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4514
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3513
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4502
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5792
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6513
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1241
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6597
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1783
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 904
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4653
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5782
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2559
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2771
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1187
  bin: 7.25e1
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genotype quality: GenotypeQuality
  all individuals: 38
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 4.75e1
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genotype quality: GenotypeQuality
  all individuals: 5
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1912
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40268
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2568
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8549
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
population: Other
population: African
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: MQ

2-219618843-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 219618843
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 219618843
    reference: chr 2
allele count: 1
allele frequency: 8.24715060946443e-6
allele num: 121254
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000393332
  ensembl transcript: ENST00000457313
  gene symbol: TTLL4
  hgvsc: ENST00000457313.1:c.2850-111C>T
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000415845
  ensembl transcript: ENST00000436668
  gene symbol: TTLL4
  hgvsc: ENST00000436668.1:c.652-14C>T
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000400068
  ensembl transcript: ENST00000417855
  gene symbol: TTLL4
  hgvsc: ENST00000417855.1:c.416-111C>T
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135912
  ensembl transcript: ENST00000472527
  gene symbol: TTLL4
  hgvsc: ENST00000472527.1:n.175-14C>T
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000396555
  ensembl transcript: ENST00000442769
  gene symbol: TTLL4
  hgvsc: ENST00000442769.1:c.3153-14C>T
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000375951
  ensembl transcript: ENST00000392102
  gene symbol: TTLL4
  hgvsc: ENST00000392102.1:c.3345-14C>T
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000258398
  ensembl transcript: ENST00000258398
  gene symbol: TTLL4
  hgvsc: ENST00000258398.4:c.3345-14C>T
  variant of: http://identifiers.org/hgnc/28976
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5792
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1241
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4500
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5777
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4696
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6513
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1783
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4653
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3513
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4505
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6596
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4067
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2559
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 904
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2772
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8619
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40269
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Other
population: African
population: Latino
population: European (Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: QD

2-219618855-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 219618855
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 219618855
    reference: chr 2
allele count: 34
allele frequency: 2.801489733364095e-4
allele num: 121364
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000258398
  ensembl transcript: ENST00000258398
  gene symbol: TTLL4
  hgvsc: ENST00000258398.4:c.3345-2A>G
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000396555
  ensembl transcript: ENST00000442769
  gene symbol: TTLL4
  hgvsc: ENST00000442769.1:c.3153-2A>G
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: true
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000375951
  ensembl transcript: ENST00000392102
  gene symbol: TTLL4
  hgvsc: ENST00000392102.1:c.3345-2A>G
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000135912
  ensembl transcript: ENST00000472527
  gene symbol: TTLL4
  hgvsc: ENST00000472527.1:n.175-2A>G
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000393332
  ensembl transcript: ENST00000457313
  gene symbol: TTLL4
  hgvsc: ENST00000457313.1:c.2850-99A>G
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000400068
  ensembl transcript: ENST00000417855
  gene symbol: TTLL4
  hgvsc: ENST00000417855.1:c.416-99A>G
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000415845
  ensembl transcript: ENST00000436668
  gene symbol: TTLL4
  hgvsc: ENST00000436668.1:c.652-2A>G
  variant of: http://identifiers.org/hgnc/28976
canonical: true
consequence: splice acceptor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 904
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5792
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5774
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4510
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1783
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6597
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4490
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3514
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1241
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4093
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6514
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2770
  bin: 9.75e1
  variant carriers: 32
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4652
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4796
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2559
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1189
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2514
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1916
  bin: 7.75e1
  variant carriers: 0
hgvs: c.3345-2A>G
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
population: Other
population: European (Finnish)
reference allele: A
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: MQ

2-219618860-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 219618860
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 219618860
    reference: chr 2
allele count: 1
allele frequency: 8.239268352970255e-6
allele num: 121370
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135912
  ensembl transcript: ENST00000472527
  gene symbol: TTLL4
  hgvsc: ENST00000472527.1:n.178A>T
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000415845
  ensembl transcript: ENST00000436668
  gene symbol: TTLL4
  hgvsc: ENST00000436668.1:c.655A>T
  hgvsp: ENSP00000415845.1:p.Lys219Asn
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000375951
  ensembl transcript: ENST00000392102
  gene symbol: TTLL4
  hgvsc: ENST00000392102.1:c.3348A>T
  hgvsp: ENSP00000375951.1:p.Lys1116Asn
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000258398
  ensembl transcript: ENST00000258398
  gene symbol: TTLL4
  hgvsc: ENST00000258398.4:c.3348A>T
  hgvsp: ENSP00000258398.4:p.Lys1116Asn
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000400068
  ensembl transcript: ENST00000417855
  gene symbol: TTLL4
  hgvsc: ENST00000417855.1:c.416-94A>T
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000396555
  ensembl transcript: ENST00000442769
  gene symbol: TTLL4
  hgvsc: ENST00000442769.1:c.3156A>T
  hgvsp: ENSP00000396555.1:p.Lys1052Asn
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000393332
  ensembl transcript: ENST00000457313
  gene symbol: TTLL4
  hgvsc: ENST00000457313.1:c.2850-94A>T
  variant of: http://identifiers.org/hgnc/28976
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4101
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5799
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4508
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6599
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1783
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6516
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4489
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4811
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2561
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 904
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5778
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2740
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3514
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1242
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4656
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8803
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2517
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1917
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1192
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Lys1116Asn
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: African
population: Latino
population: South Asian
reference allele: A
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: MQ

2-219618867-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 219618867
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 219618867
    reference: chr 2
allele count: 2
allele frequency: 1.647582173160887e-5
allele num: 121390
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000393332
  ensembl transcript: ENST00000457313
  gene symbol: TTLL4
  hgvsc: ENST00000457313.1:c.2850-87T>A
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000375951
  ensembl transcript: ENST00000392102
  gene symbol: TTLL4
  hgvsc: ENST00000392102.1:c.3355T>A
  hgvsp: ENSP00000375951.1:p.Ser1119Thr
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000396555
  ensembl transcript: ENST00000442769
  gene symbol: TTLL4
  hgvsc: ENST00000442769.1:c.3163T>A
  hgvsp: ENSP00000396555.1:p.Ser1055Thr
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000258398
  ensembl transcript: ENST00000258398
  gene symbol: TTLL4
  hgvsc: ENST00000258398.4:c.3355T>A
  hgvsp: ENSP00000258398.4:p.Ser1119Thr
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135912
  ensembl transcript: ENST00000472527
  gene symbol: TTLL4
  hgvsc: ENST00000472527.1:n.185T>A
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000400068
  ensembl transcript: ENST00000417855
  gene symbol: TTLL4
  hgvsc: ENST00000417855.1:c.416-87T>A
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000415845
  ensembl transcript: ENST00000436668
  gene symbol: TTLL4
  hgvsc: ENST00000436668.1:c.662T>A
  hgvsp: ENSP00000415845.1:p.Ser222Thr
  variant of: http://identifiers.org/hgnc/28976
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5780
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4489
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3514
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5799
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 904
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4829
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6516
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1783
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4105
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4505
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6599
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2740
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4657
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2561
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1242
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1197
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40261
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Ser1119Thr
num of homozygotes: 0
population: South Asian
population: Other
population: Latino
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: T
site quality: DP
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD

2-219618869-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 219618869
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 219618869
    reference: chr 2
allele count: 1
allele frequency: 8.237639422047218e-6
allele num: 121394
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000396555
  ensembl transcript: ENST00000442769
  gene symbol: TTLL4
  hgvsc: ENST00000442769.1:c.3165C>T
  hgvsp: ENST00000442769.1:c.3165C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135912
  ensembl transcript: ENST00000472527
  gene symbol: TTLL4
  hgvsc: ENST00000472527.1:n.187C>T
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000375951
  ensembl transcript: ENST00000392102
  gene symbol: TTLL4
  hgvsc: ENST00000392102.1:c.3357C>T
  hgvsp: ENST00000392102.1:c.3357C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000258398
  ensembl transcript: ENST00000258398
  gene symbol: TTLL4
  hgvsc: ENST00000258398.4:c.3357C>T
  hgvsp: ENST00000258398.4:c.3357C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000415845
  ensembl transcript: ENST00000436668
  gene symbol: TTLL4
  hgvsc: ENST00000436668.1:c.664C>T
  hgvsp: ENST00000436668.1:c.664C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000393332
  ensembl transcript: ENST00000457313
  gene symbol: TTLL4
  hgvsc: ENST00000457313.1:c.2850-85C>T
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000400068
  ensembl transcript: ENST00000417855
  gene symbol: TTLL4
  hgvsc: ENST00000417855.1:c.416-85C>T
  variant of: http://identifiers.org/hgnc/28976
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4506
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4827
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5779
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4656
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2739
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6599
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1783
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6516
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4496
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3514
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4107
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2561
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5799
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1242
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 904
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8841
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40259
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2513
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ser1119Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: South Asian
population: European (Finnish)
population: Latino
population: East Asian
population: African
reference allele: C
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: DP

http://identifiers.org/exac.variant/2-219618884-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 219618884
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 219618884
    reference: chr 2
allele count: 1
allele frequency: 8.236960890909689e-6
allele num: 121404
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000396555
  ensembl transcript: ENST00000442769
  gene symbol: TTLL4
  hgvsc: ENST00000442769.1:c.3180A>C
  hgvsp: ENST00000442769.1:c.3180A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135912
  ensembl transcript: ENST00000472527
  gene symbol: TTLL4
  hgvsc: ENST00000472527.1:n.202A>C
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000415845
  ensembl transcript: ENST00000436668
  gene symbol: TTLL4
  hgvsc: ENST00000436668.1:c.679A>C
  hgvsp: ENST00000436668.1:c.679A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000393332
  ensembl transcript: ENST00000457313
  gene symbol: TTLL4
  hgvsc: ENST00000457313.1:c.2850-70A>C
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000400068
  ensembl transcript: ENST00000417855
  gene symbol: TTLL4
  hgvsc: ENST00000417855.1:c.416-70A>C
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000258398
  ensembl transcript: ENST00000258398
  gene symbol: TTLL4
  hgvsc: ENST00000258398.4:c.3372A>C
  hgvsp: ENST00000258398.4:c.3372A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000375951
  ensembl transcript: ENST00000392102
  gene symbol: TTLL4
  hgvsc: ENST00000392102.1:c.3372A>C
  hgvsp: ENST00000392102.1:c.3372A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/28976
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4840
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2738
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6599
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1242
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5781
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6516
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4656
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4506
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3514
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4493
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4110
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 904
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5801
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2561
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1783
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1914
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1274
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40258
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Leu1124Leu
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
population: South Asian
population: Other
reference allele: A
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: DP
site quality: FS
site quality: BaseQRankSum

2-219618884-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 219618884
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 219618884
    reference: chr 2
allele count: 1
allele frequency: 8.236960890909689e-6
allele num: 121404
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000400068
  ensembl transcript: ENST00000417855
  gene symbol: TTLL4
  hgvsc: ENST00000417855.1:c.416-70A>G
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000375951
  ensembl transcript: ENST00000392102
  gene symbol: TTLL4
  hgvsc: ENST00000392102.1:c.3372A>G
  hgvsp: ENST00000392102.1:c.3372A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000258398
  ensembl transcript: ENST00000258398
  gene symbol: TTLL4
  hgvsc: ENST00000258398.4:c.3372A>G
  hgvsp: ENST00000258398.4:c.3372A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000393332
  ensembl transcript: ENST00000457313
  gene symbol: TTLL4
  hgvsc: ENST00000457313.1:c.2850-70A>G
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000396555
  ensembl transcript: ENST00000442769
  gene symbol: TTLL4
  hgvsc: ENST00000442769.1:c.3180A>G
  hgvsp: ENST00000442769.1:c.3180A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135912
  ensembl transcript: ENST00000472527
  gene symbol: TTLL4
  hgvsc: ENST00000472527.1:n.202A>G
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000415845
  ensembl transcript: ENST00000436668
  gene symbol: TTLL4
  hgvsc: ENST00000436668.1:c.679A>G
  hgvsp: ENST00000436668.1:c.679A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/28976
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5801
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4493
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3514
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4110
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4506
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2738
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5781
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6516
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1783
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4656
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 904
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1242
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2561
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6599
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4840
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1274
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40258
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1194
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Leu1124Leu
num of homozygotes: 0
population: African
population: Other
population: Latino
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
reference allele: A
site quality: QD
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum

2-219618885-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 219618885
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 219618885
    reference: chr 2
allele count: 1
allele frequency: 8.236960890909689e-6
allele num: 121404
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000396555
  ensembl transcript: ENST00000442769
  gene symbol: TTLL4
  hgvsc: ENST00000442769.1:c.3181C>T
  hgvsp: ENST00000442769.1:c.3181C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000258398
  ensembl transcript: ENST00000258398
  gene symbol: TTLL4
  hgvsc: ENST00000258398.4:c.3373C>T
  hgvsp: ENST00000258398.4:c.3373C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000400068
  ensembl transcript: ENST00000417855
  gene symbol: TTLL4
  hgvsc: ENST00000417855.1:c.416-69C>T
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000375951
  ensembl transcript: ENST00000392102
  gene symbol: TTLL4
  hgvsc: ENST00000392102.1:c.3373C>T
  hgvsp: ENST00000392102.1:c.3373C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000393332
  ensembl transcript: ENST00000457313
  gene symbol: TTLL4
  hgvsc: ENST00000457313.1:c.2850-69C>T
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135912
  ensembl transcript: ENST00000472527
  gene symbol: TTLL4
  hgvsc: ENST00000472527.1:n.203C>T
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000415845
  ensembl transcript: ENST00000436668
  gene symbol: TTLL4
  hgvsc: ENST00000436668.1:c.680C>T
  hgvsp: ENST00000436668.1:c.680C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28976
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4507
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4494
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5782
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4839
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2561
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4108
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1783
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1242
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6516
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5801
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3514
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 905
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4657
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6599
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2736
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2571
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1913
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1194
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2077
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Leu1125Leu
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Other
population: East Asian
reference allele: C
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: DP

2-219618887-ACT-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 219618887
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 219618885
    reference: chr 2
allele count: 1
allele frequency: 8.236825198095647e-6
allele num: 121406
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000400068
  ensembl transcript: ENST00000417855
  gene symbol: TTLL4
  hgvsc: ENST00000417855.1:c.416-62_416-61delCT
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000258398
  ensembl transcript: ENST00000258398
  gene symbol: TTLL4
  hgvsc: ENST00000258398.4:c.3380_3381delCT
  hgvsp: ENSP00000258398.4:p.Ser1127Ter
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135912
  ensembl transcript: ENST00000472527
  gene symbol: TTLL4
  hgvsc: ENST00000472527.1:n.210_211delCT
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000396555
  ensembl transcript: ENST00000442769
  gene symbol: TTLL4
  hgvsc: ENST00000442769.1:c.3188_3189delCT
  hgvsp: ENSP00000396555.1:p.Ser1063Ter
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000415845
  ensembl transcript: ENST00000436668
  gene symbol: TTLL4
  hgvsc: ENST00000436668.1:c.687_688delCT
  hgvsp: ENSP00000415845.1:p.Ser230Ter
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000375951
  ensembl transcript: ENST00000392102
  gene symbol: TTLL4
  hgvsc: ENST00000392102.1:c.3380_3381delCT
  hgvsp: ENSP00000375951.1:p.Ser1127Ter
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000393332
  ensembl transcript: ENST00000457313
  gene symbol: TTLL4
  hgvsc: ENST00000457313.1:c.2850-62_2850-61delCT
  variant of: http://identifiers.org/hgnc/28976
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4111
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4507
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2561
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1783
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3514
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4656
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4495
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5780
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4836
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 905
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2736
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1242
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6517
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6600
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5801
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2518
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2077
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40259
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1195
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Ser1127Ter
num of homozygotes: 0
population: African
population: Other
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: ACT
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: DP

2-219618888-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 219618888
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 219618888
    reference: chr 2
allele count: 195
allele frequency: 1.606207373727389e-3
allele num: 121404
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000375951
  ensembl transcript: ENST00000392102
  gene symbol: TTLL4
  hgvsc: ENST00000392102.1:c.3376C>T
  hgvsp: ENSP00000375951.1:p.Leu1126Phe
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135912
  ensembl transcript: ENST00000472527
  gene symbol: TTLL4
  hgvsc: ENST00000472527.1:n.206C>T
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000415845
  ensembl transcript: ENST00000436668
  gene symbol: TTLL4
  hgvsc: ENST00000436668.1:c.683C>T
  hgvsp: ENSP00000415845.1:p.Leu229Phe
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000393332
  ensembl transcript: ENST00000457313
  gene symbol: TTLL4
  hgvsc: ENST00000457313.1:c.2850-66C>T
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000396555
  ensembl transcript: ENST00000442769
  gene symbol: TTLL4
  hgvsc: ENST00000442769.1:c.3184C>T
  hgvsp: ENSP00000396555.1:p.Leu1062Phe
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000258398
  ensembl transcript: ENST00000258398
  gene symbol: TTLL4
  hgvsc: ENST00000258398.4:c.3376C>T
  hgvsp: ENSP00000258398.4:p.Leu1126Phe
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000400068
  ensembl transcript: ENST00000417855
  gene symbol: TTLL4
  hgvsc: ENST00000417855.1:c.416-66C>T
  variant of: http://identifiers.org/hgnc/28976
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4659
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3514
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 904
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1783
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4107
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6516
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4836
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6597
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 636
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5799
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5781
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4493
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2741
  bin: 9.75e1
  variant carriers: 180
genotype depth: GenotypeDepth
  all individuals: 4507
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2562
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1243
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2513
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1193
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Leu1126Phe
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
population: Other
population: African
reference allele: C
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum

2-219618891-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 219618891
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 219618891
    reference: chr 2
allele count: 2
allele frequency: 1.647337901950448e-5
allele num: 121408
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135912
  ensembl transcript: ENST00000472527
  gene symbol: TTLL4
  hgvsc: ENST00000472527.1:n.209T>C
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000400068
  ensembl transcript: ENST00000417855
  gene symbol: TTLL4
  hgvsc: ENST00000417855.1:c.416-63T>C
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000393332
  ensembl transcript: ENST00000457313
  gene symbol: TTLL4
  hgvsc: ENST00000457313.1:c.2850-63T>C
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000415845
  ensembl transcript: ENST00000436668
  gene symbol: TTLL4
  hgvsc: ENST00000436668.1:c.686T>C
  hgvsp: ENSP00000415845.1:p.Ser230Pro
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000258398
  ensembl transcript: ENST00000258398
  gene symbol: TTLL4
  hgvsc: ENST00000258398.4:c.3379T>C
  hgvsp: ENSP00000258398.4:p.Ser1127Pro
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000375951
  ensembl transcript: ENST00000392102
  gene symbol: TTLL4
  hgvsc: ENST00000392102.1:c.3379T>C
  hgvsp: ENSP00000375951.1:p.Ser1127Pro
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000396555
  ensembl transcript: ENST00000442769
  gene symbol: TTLL4
  hgvsc: ENST00000442769.1:c.3187T>C
  hgvsp: ENSP00000396555.1:p.Ser1063Pro
  variant of: http://identifiers.org/hgnc/28976
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5816
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6616
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6537
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4496
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5790
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1251
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4519
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4677
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2570
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2571
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4851
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1789
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4123
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3527
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 908
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2577
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40215
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2524
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Ser1127Pro
num of homozygotes: 0
population: African
population: Other
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: T
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum

2-219618893-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 219618893
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 219618893
    reference: chr 2
allele count: 1
allele frequency: 8.236689509752241e-6
allele num: 121408
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000396555
  ensembl transcript: ENST00000442769
  gene symbol: TTLL4
  hgvsc: ENST00000442769.1:c.3189T>A
  hgvsp: ENST00000442769.1:c.3189T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000415845
  ensembl transcript: ENST00000436668
  gene symbol: TTLL4
  hgvsc: ENST00000436668.1:c.688T>A
  hgvsp: ENST00000436668.1:c.688T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135912
  ensembl transcript: ENST00000472527
  gene symbol: TTLL4
  hgvsc: ENST00000472527.1:n.211T>A
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000400068
  ensembl transcript: ENST00000417855
  gene symbol: TTLL4
  hgvsc: ENST00000417855.1:c.416-61T>A
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000375951
  ensembl transcript: ENST00000392102
  gene symbol: TTLL4
  hgvsc: ENST00000392102.1:c.3381T>A
  hgvsp: ENST00000392102.1:c.3381T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000393332
  ensembl transcript: ENST00000457313
  gene symbol: TTLL4
  hgvsc: ENST00000457313.1:c.2850-61T>A
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000258398
  ensembl transcript: ENST00000258398
  gene symbol: TTLL4
  hgvsc: ENST00000258398.4:c.3381T>A
  hgvsp: ENST00000258398.4:c.3381T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28976
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4677
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5816
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2571
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4854
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4495
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4520
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3527
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4123
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6618
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 908
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5790
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1789
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6536
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2568
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1251
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8874
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1275
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2524
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Ser1127Ser
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: T
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum

2-219618899-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 219618899
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 219618899
    reference: chr 2
allele count: 13
allele frequency: 1.070751997364303e-4
allele num: 121410
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000258398
  ensembl transcript: ENST00000258398
  gene symbol: TTLL4
  hgvsc: ENST00000258398.4:c.3387C>T
  hgvsp: ENST00000258398.4:c.3387C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000375951
  ensembl transcript: ENST00000392102
  gene symbol: TTLL4
  hgvsc: ENST00000392102.1:c.3387C>T
  hgvsp: ENST00000392102.1:c.3387C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000396555
  ensembl transcript: ENST00000442769
  gene symbol: TTLL4
  hgvsc: ENST00000442769.1:c.3195C>T
  hgvsp: ENST00000442769.1:c.3195C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000415845
  ensembl transcript: ENST00000436668
  gene symbol: TTLL4
  hgvsc: ENST00000436668.1:c.694C>T
  hgvsp: ENST00000436668.1:c.694C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135912
  ensembl transcript: ENST00000472527
  gene symbol: TTLL4
  hgvsc: ENST00000472527.1:n.217C>T
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000393332
  ensembl transcript: ENST00000457313
  gene symbol: TTLL4
  hgvsc: ENST00000457313.1:c.2850-55C>T
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000400068
  ensembl transcript: ENST00000417855
  gene symbol: TTLL4
  hgvsc: ENST00000417855.1:c.416-55C>T
  variant of: http://identifiers.org/hgnc/28976
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4850
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6536
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2571
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2567
  bin: 9.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4677
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5817
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1789
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5790
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6618
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4492
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1251
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3527
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4521
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 909
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4129
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2091
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1274
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Asp1129Asp
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: South Asian
population: Other
population: African
population: European (Finnish)
population: East Asian
reference allele: C
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP

2-219618900-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 219618900
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 219618900
    reference: chr 2
allele count: 2
allele frequency: 1.647337901950448e-5
allele num: 121408
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000258398
  ensembl transcript: ENST00000258398
  gene symbol: TTLL4
  hgvsc: ENST00000258398.4:c.3388G>A
  hgvsp: ENSP00000258398.4:p.Gly1130Arg
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000375951
  ensembl transcript: ENST00000392102
  gene symbol: TTLL4
  hgvsc: ENST00000392102.1:c.3388G>A
  hgvsp: ENSP00000375951.1:p.Gly1130Arg
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000415845
  ensembl transcript: ENST00000436668
  gene symbol: TTLL4
  hgvsc: ENST00000436668.1:c.695G>A
  hgvsp: ENSP00000415845.1:p.Gly233Arg
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000396555
  ensembl transcript: ENST00000442769
  gene symbol: TTLL4
  hgvsc: ENST00000442769.1:c.3196G>A
  hgvsp: ENSP00000396555.1:p.Gly1066Arg
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000400068
  ensembl transcript: ENST00000417855
  gene symbol: TTLL4
  hgvsc: ENST00000417855.1:c.416-54G>A
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135912
  ensembl transcript: ENST00000472527
  gene symbol: TTLL4
  hgvsc: ENST00000472527.1:n.218G>A
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000393332
  ensembl transcript: ENST00000457313
  gene symbol: TTLL4
  hgvsc: ENST00000457313.1:c.2850-54G>A
  variant of: http://identifiers.org/hgnc/28976
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5821
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5791
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4676
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2556
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1790
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4491
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3528
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4129
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6620
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6537
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4522
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4854
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 908
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1251
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2571
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2522
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1196
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1274
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2579
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1915
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Gly1130Arg
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum

2-219618900-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 219618900
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 219618900
    reference: chr 2
allele count: 1
allele frequency: 8.236689509752241e-6
allele num: 121408
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000258398
  ensembl transcript: ENST00000258398
  gene symbol: TTLL4
  hgvsc: ENST00000258398.4:c.3388G>T
  hgvsp: ENSP00000258398.4:p.Gly1130Trp
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135912
  ensembl transcript: ENST00000472527
  gene symbol: TTLL4
  hgvsc: ENST00000472527.1:n.218G>T
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000415845
  ensembl transcript: ENST00000436668
  gene symbol: TTLL4
  hgvsc: ENST00000436668.1:c.695G>T
  hgvsp: ENSP00000415845.1:p.Gly233Trp
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000396555
  ensembl transcript: ENST00000442769
  gene symbol: TTLL4
  hgvsc: ENST00000442769.1:c.3196G>T
  hgvsp: ENSP00000396555.1:p.Gly1066Trp
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000400068
  ensembl transcript: ENST00000417855
  gene symbol: TTLL4
  hgvsc: ENST00000417855.1:c.416-54G>T
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000375951
  ensembl transcript: ENST00000392102
  gene symbol: TTLL4
  hgvsc: ENST00000392102.1:c.3388G>T
  hgvsp: ENSP00000375951.1:p.Gly1130Trp
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000393332
  ensembl transcript: ENST00000457313
  gene symbol: TTLL4
  hgvsc: ENST00000457313.1:c.2850-54G>T
  variant of: http://identifiers.org/hgnc/28976
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5791
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3528
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4676
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1790
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4129
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4491
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2556
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5821
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2571
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6620
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6537
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1251
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4522
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4854
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 908
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2091
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2579
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1196
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Gly1130Trp
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: DP
site quality: ClippingRankSum

2-219618902-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 219618902
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 219618902
    reference: chr 2
allele count: 12
allele frequency: 9.884027411702688e-5
allele num: 121408
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135912
  ensembl transcript: ENST00000472527
  gene symbol: TTLL4
  hgvsc: ENST00000472527.1:n.220G>A
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000258398
  ensembl transcript: ENST00000258398
  gene symbol: TTLL4
  hgvsc: ENST00000258398.4:c.3390G>A
  hgvsp: ENST00000258398.4:c.3390G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000415845
  ensembl transcript: ENST00000436668
  gene symbol: TTLL4
  hgvsc: ENST00000436668.1:c.697G>A
  hgvsp: ENST00000436668.1:c.697G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000400068
  ensembl transcript: ENST00000417855
  gene symbol: TTLL4
  hgvsc: ENST00000417855.1:c.416-52G>A
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000375951
  ensembl transcript: ENST00000392102
  gene symbol: TTLL4
  hgvsc: ENST00000392102.1:c.3390G>A
  hgvsp: ENST00000392102.1:c.3390G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000393332
  ensembl transcript: ENST00000457313
  gene symbol: TTLL4
  hgvsc: ENST00000457313.1:c.2850-52G>A
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000396555
  ensembl transcript: ENST00000442769
  gene symbol: TTLL4
  hgvsc: ENST00000442769.1:c.3198G>A
  hgvsp: ENST00000442769.1:c.3198G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28976
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4523
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4494
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4129
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5822
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6536
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6622
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5791
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1790
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4676
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4852
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 908
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2552
  bin: 9.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 1251
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2571
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3528
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2578
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1199
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2094
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Gly1130Gly
num of homozygotes: 0
population: Other
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum

2-219618907-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 219618907
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 219618907
    reference: chr 2
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000400068
  ensembl transcript: ENST00000417855
  gene symbol: TTLL4
  hgvsc: ENST00000417855.1:c.416-47C>T
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000393332
  ensembl transcript: ENST00000457313
  gene symbol: TTLL4
  hgvsc: ENST00000457313.1:c.2850-47C>T
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000415845
  ensembl transcript: ENST00000436668
  gene symbol: TTLL4
  hgvsc: ENST00000436668.1:c.702C>T
  hgvsp: ENSP00000415845.1:p.Thr235Met
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000258398
  ensembl transcript: ENST00000258398
  gene symbol: TTLL4
  hgvsc: ENST00000258398.4:c.3395C>T
  hgvsp: ENSP00000258398.4:p.Thr1132Met
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000375951
  ensembl transcript: ENST00000392102
  gene symbol: TTLL4
  hgvsc: ENST00000392102.1:c.3395C>T
  hgvsp: ENSP00000375951.1:p.Thr1132Met
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000396555
  ensembl transcript: ENST00000442769
  gene symbol: TTLL4
  hgvsc: ENST00000442769.1:c.3203C>T
  hgvsp: ENSP00000396555.1:p.Thr1068Met
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135912
  ensembl transcript: ENST00000472527
  gene symbol: TTLL4
  hgvsc: ENST00000472527.1:n.225C>T
  variant of: http://identifiers.org/hgnc/28976
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3528
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2542
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4500
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4677
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4854
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5824
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1790
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5790
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4527
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6538
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6621
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2572
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 909
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4128
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1251
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2093
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8887
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1199
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Thr1132Met
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
population: Latino
population: East Asian
population: Other
reference allele: C
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum

2-219618908-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 219618908
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 219618908
    reference: chr 2
allele count: 5
allele frequency: 4.11820907323823e-5
allele num: 121412
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000415845
  ensembl transcript: ENST00000436668
  gene symbol: TTLL4
  hgvsc: ENST00000436668.1:c.703G>A
  hgvsp: ENST00000436668.1:c.703G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000258398
  ensembl transcript: ENST00000258398
  gene symbol: TTLL4
  hgvsc: ENST00000258398.4:c.3396G>A
  hgvsp: ENST00000258398.4:c.3396G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000375951
  ensembl transcript: ENST00000392102
  gene symbol: TTLL4
  hgvsc: ENST00000392102.1:c.3396G>A
  hgvsp: ENST00000392102.1:c.3396G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135912
  ensembl transcript: ENST00000472527
  gene symbol: TTLL4
  hgvsc: ENST00000472527.1:n.226G>A
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000393332
  ensembl transcript: ENST00000457313
  gene symbol: TTLL4
  hgvsc: ENST00000457313.1:c.2850-46G>A
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000396555
  ensembl transcript: ENST00000442769
  gene symbol: TTLL4
  hgvsc: ENST00000442769.1:c.3204G>A
  hgvsp: ENST00000442769.1:c.3204G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000400068
  ensembl transcript: ENST00000417855
  gene symbol: TTLL4
  hgvsc: ENST00000417855.1:c.416-46G>A
  variant of: http://identifiers.org/hgnc/28976
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6538
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4128
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6621
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 908
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4856
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1251
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5823
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4527
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4677
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4499
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2572
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2542
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1790
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3528
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5791
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8886
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40205
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1197
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Thr1132Thr
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Other
population: East Asian
population: African
population: European (Finnish)
population: Latino
reference allele: G
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: QD

2-219618918-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 219618918
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 219618918
    reference: chr 2
allele count: 1
allele frequency: 8.236689509752241e-6
allele num: 121408
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000393332
  ensembl transcript: ENST00000457313
  gene symbol: TTLL4
  hgvsc: ENST00000457313.1:c.2850-36A>G
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000400068
  ensembl transcript: ENST00000417855
  gene symbol: TTLL4
  hgvsc: ENST00000417855.1:c.416-36A>G
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000396555
  ensembl transcript: ENST00000442769
  gene symbol: TTLL4
  hgvsc: ENST00000442769.1:c.3214A>G
  hgvsp: ENSP00000396555.1:p.Lys1072Glu
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000375951
  ensembl transcript: ENST00000392102
  gene symbol: TTLL4
  hgvsc: ENST00000392102.1:c.3406A>G
  hgvsp: ENSP00000375951.1:p.Lys1136Glu
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000415845
  ensembl transcript: ENST00000436668
  gene symbol: TTLL4
  hgvsc: ENST00000436668.1:c.713A>G
  hgvsp: ENSP00000415845.1:p.Lys239Glu
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000258398
  ensembl transcript: ENST00000258398
  gene symbol: TTLL4
  hgvsc: ENST00000258398.4:c.3406A>G
  hgvsp: ENSP00000258398.4:p.Lys1136Glu
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135912
  ensembl transcript: ENST00000472527
  gene symbol: TTLL4
  hgvsc: ENST00000472527.1:n.236A>G
  variant of: http://identifiers.org/hgnc/28976
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4125
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 908
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6539
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4677
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5794
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4859
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5823
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1790
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1251
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2572
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4525
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4504
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3529
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2537
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6621
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2581
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2093
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1275
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8893
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40202
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2528
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Lys1136Glu
num of homozygotes: 0
population: South Asian
population: Other
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum

http://identifiers.org/exac.variant/2-219618921-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 219618921
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 219618921
    reference: chr 2
allele count: 9
allele frequency: 7.412898443291327e-5
allele num: 121410
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000396555
  ensembl transcript: ENST00000442769
  gene symbol: TTLL4
  hgvsc: ENST00000442769.1:c.3217A>C
  hgvsp: ENSP00000396555.1:p.Lys1073Gln
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000258398
  ensembl transcript: ENST00000258398
  gene symbol: TTLL4
  hgvsc: ENST00000258398.4:c.3409A>C
  hgvsp: ENSP00000258398.4:p.Lys1137Gln
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000393332
  ensembl transcript: ENST00000457313
  gene symbol: TTLL4
  hgvsc: ENST00000457313.1:c.2850-33A>C
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000375951
  ensembl transcript: ENST00000392102
  gene symbol: TTLL4
  hgvsc: ENST00000392102.1:c.3409A>C
  hgvsp: ENSP00000375951.1:p.Lys1137Gln
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000400068
  ensembl transcript: ENST00000417855
  gene symbol: TTLL4
  hgvsc: ENST00000417855.1:c.416-33A>C
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135912
  ensembl transcript: ENST00000472527
  gene symbol: TTLL4
  hgvsc: ENST00000472527.1:n.239A>C
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000415845
  ensembl transcript: ENST00000436668
  gene symbol: TTLL4
  hgvsc: ENST00000436668.1:c.716A>C
  hgvsp: ENSP00000415845.1:p.Lys240Gln
  variant of: http://identifiers.org/hgnc/28976
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6538
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1790
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5794
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4504
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4125
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4860
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4677
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1251
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6622
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4525
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2572
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3529
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2536
  bin: 9.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 908
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5824
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2581
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1196
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1914
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Lys1137Gln
num of homozygotes: 1
population: East Asian
population: Latino
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: DP

2-219618923-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 219618923
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 219618923
    reference: chr 2
allele count: 5
allele frequency: 4.118276912939626e-5
allele num: 121410
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000393332
  ensembl transcript: ENST00000457313
  gene symbol: TTLL4
  hgvsc: ENST00000457313.1:c.2850-31G>T
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000375951
  ensembl transcript: ENST00000392102
  gene symbol: TTLL4
  hgvsc: ENST00000392102.1:c.3411G>T
  hgvsp: ENSP00000375951.1:p.Lys1137Asn
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000258398
  ensembl transcript: ENST00000258398
  gene symbol: TTLL4
  hgvsc: ENST00000258398.4:c.3411G>T
  hgvsp: ENSP00000258398.4:p.Lys1137Asn
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000400068
  ensembl transcript: ENST00000417855
  gene symbol: TTLL4
  hgvsc: ENST00000417855.1:c.416-31G>T
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000415845
  ensembl transcript: ENST00000436668
  gene symbol: TTLL4
  hgvsc: ENST00000436668.1:c.718G>T
  hgvsp: ENSP00000415845.1:p.Lys240Asn
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135912
  ensembl transcript: ENST00000472527
  gene symbol: TTLL4
  hgvsc: ENST00000472527.1:n.241G>T
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000396555
  ensembl transcript: ENST00000442769
  gene symbol: TTLL4
  hgvsc: ENST00000442769.1:c.3219G>T
  hgvsp: ENSP00000396555.1:p.Lys1073Asn
  variant of: http://identifiers.org/hgnc/28976
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4678
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3531
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4524
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6538
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5794
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1791
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5824
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4498
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4859
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4129
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1252
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2572
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2531
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 6622
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 909
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40202
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 1914
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2093
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1196
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Lys1137Asn
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: East Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum

2-219618925-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 219618925
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 219618925
    reference: chr 2
allele count: 373
allele frequency: 3.07218396863572e-3
allele num: 121412
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000415845
  ensembl transcript: ENST00000436668
  gene symbol: TTLL4
  hgvsc: ENST00000436668.1:c.720C>T
  hgvsp: ENSP00000415845.1:p.Thr241Ile
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000258398
  ensembl transcript: ENST00000258398
  gene symbol: TTLL4
  hgvsc: ENST00000258398.4:c.3413C>T
  hgvsp: ENSP00000258398.4:p.Thr1138Ile
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135912
  ensembl transcript: ENST00000472527
  gene symbol: TTLL4
  hgvsc: ENST00000472527.1:n.243C>T
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000393332
  ensembl transcript: ENST00000457313
  gene symbol: TTLL4
  hgvsc: ENST00000457313.1:c.2850-29C>T
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000396555
  ensembl transcript: ENST00000442769
  gene symbol: TTLL4
  hgvsc: ENST00000442769.1:c.3221C>T
  hgvsp: ENSP00000396555.1:p.Thr1074Ile
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000400068
  ensembl transcript: ENST00000417855
  gene symbol: TTLL4
  hgvsc: ENST00000417855.1:c.416-29C>T
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000375951
  ensembl transcript: ENST00000392102
  gene symbol: TTLL4
  hgvsc: ENST00000392102.1:c.3413C>T
  hgvsp: ENSP00000375951.1:p.Thr1138Ile
  variant of: http://identifiers.org/hgnc/28976
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1251
  bin: 8.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 4477
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 908
  bin: 8.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2560
  bin: 9.75e1
  variant carriers: 320
genotype depth: GenotypeDepth
  all individuals: 6624
  bin: 4.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4850
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4121
  bin: 3.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 2575
  bin: 7.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 3531
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4529
  bin: 3.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 6538
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 5826
  bin: 5.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 4676
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1792
  bin: 7.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 5794
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 9.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2088
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2518
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1273
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1908
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Thr1138Ile
num of homozygotes: 3
population: Other
population: East Asian
population: Latino
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum

2-219618929-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 219618929
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 219618929
    reference: chr 2
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000396555
  ensembl transcript: ENST00000442769
  gene symbol: TTLL4
  hgvsc: ENST00000442769.1:c.3225A>T
  hgvsp: ENSP00000396555.1:p.Gln1075His
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000400068
  ensembl transcript: ENST00000417855
  gene symbol: TTLL4
  hgvsc: ENST00000417855.1:c.416-25A>T
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000393332
  ensembl transcript: ENST00000457313
  gene symbol: TTLL4
  hgvsc: ENST00000457313.1:c.2850-25A>T
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000375951
  ensembl transcript: ENST00000392102
  gene symbol: TTLL4
  hgvsc: ENST00000392102.1:c.3417A>T
  hgvsp: ENSP00000375951.1:p.Gln1139His
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000415845
  ensembl transcript: ENST00000436668
  gene symbol: TTLL4
  hgvsc: ENST00000436668.1:c.724A>T
  hgvsp: ENSP00000415845.1:p.Gln242His
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135912
  ensembl transcript: ENST00000472527
  gene symbol: TTLL4
  hgvsc: ENST00000472527.1:n.247A>T
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000258398
  ensembl transcript: ENST00000258398
  gene symbol: TTLL4
  hgvsc: ENST00000258398.4:c.3417A>T
  hgvsp: ENSP00000258398.4:p.Gln1139His
  variant of: http://identifiers.org/hgnc/28976
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3547
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6570
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 640
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5828
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4906
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5850
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4144
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6659
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2251
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2597
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 913
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4552
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1799
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4487
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1257
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4693
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1918
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40109
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Gln1139His
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Other
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
reference allele: A
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD

2-219618940-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 219618940
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 219618940
    reference: chr 2
allele count: 1
allele frequency: 8.236689509752241e-6
allele num: 121408
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000393332
  ensembl transcript: ENST00000457313
  gene symbol: TTLL4
  hgvsc: ENST00000457313.1:c.2850-14C>G
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000375951
  ensembl transcript: ENST00000392102
  gene symbol: TTLL4
  hgvsc: ENST00000392102.1:c.3428C>G
  hgvsp: ENSP00000375951.1:p.Ser1143Cys
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000396555
  ensembl transcript: ENST00000442769
  gene symbol: TTLL4
  hgvsc: ENST00000442769.1:c.3236C>G
  hgvsp: ENSP00000396555.1:p.Ser1079Cys
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135912
  ensembl transcript: ENST00000472527
  gene symbol: TTLL4
  hgvsc: ENST00000472527.1:n.258C>G
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000258398
  ensembl transcript: ENST00000258398
  gene symbol: TTLL4
  hgvsc: ENST00000258398.4:c.3428C>G
  hgvsp: ENSP00000258398.4:p.Ser1143Cys
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000415845
  ensembl transcript: ENST00000436668
  gene symbol: TTLL4
  hgvsc: ENST00000436668.1:c.735C>G
  hgvsp: ENSP00000415845.1:p.Ser246Cys
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000400068
  ensembl transcript: ENST00000417855
  gene symbol: TTLL4
  hgvsc: ENST00000417855.1:c.416-14C>G
  variant of: http://identifiers.org/hgnc/28976
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4692
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5830
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2249
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4914
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6570
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4484
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1798
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 640
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2597
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4552
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6658
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3549
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4142
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5850
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 913
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1257
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2603
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2098
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1924
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Ser1143Cys
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
population: Latino
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum

2-219618943-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 219618943
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 219618943
    reference: chr 2
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000393332
  ensembl transcript: ENST00000457313
  gene symbol: TTLL4
  hgvsc: ENST00000457313.1:c.2850-11C>T
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: incomplete_terminal_codon_variant
  consequence: coding_sequence_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000415845
  ensembl transcript: ENST00000436668
  gene symbol: TTLL4
  hgvsc: ENST00000436668.1:c.738C>T
  hgvsp: ENST00000436668.1:c.738C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000258398
  ensembl transcript: ENST00000258398
  gene symbol: TTLL4
  hgvsc: ENST00000258398.4:c.3431C>T
  hgvsp: ENSP00000258398.4:p.Pro1144Leu
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000375951
  ensembl transcript: ENST00000392102
  gene symbol: TTLL4
  hgvsc: ENST00000392102.1:c.3431C>T
  hgvsp: ENSP00000375951.1:p.Pro1144Leu
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000396555
  ensembl transcript: ENST00000442769
  gene symbol: TTLL4
  hgvsc: ENST00000442769.1:c.3239C>T
  hgvsp: ENSP00000396555.1:p.Pro1080Leu
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135912
  ensembl transcript: ENST00000472527
  gene symbol: TTLL4
  hgvsc: ENST00000472527.1:n.261C>T
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000400068
  ensembl transcript: ENST00000417855
  gene symbol: TTLL4
  hgvsc: ENST00000417855.1:c.416-11C>T
  variant of: http://identifiers.org/hgnc/28976
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6570
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6658
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4485
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4144
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3549
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4692
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2249
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1798
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5850
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4915
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 640
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4552
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5830
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 913
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1257
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2597
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1282
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40107
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8939
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Pro1144Leu
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: East Asian
population: African
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: DP

2-219618946-AT-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 219618946
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 219618945
    reference: chr 2
allele count: 1
allele frequency: 8.236825198095647e-6
allele num: 121406
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000400068
  ensembl transcript: ENST00000417855
  gene symbol: TTLL4
  hgvsc: ENST00000417855.1:c.416-7delT
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135912
  ensembl transcript: ENST00000472527
  gene symbol: TTLL4
  hgvsc: ENST00000472527.1:n.265delT
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000258398
  ensembl transcript: ENST00000258398
  gene symbol: TTLL4
  hgvsc: ENST00000258398.4:c.3435delT
  hgvsp: ENSP00000258398.4:p.Gln1147ArgfsTer25
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000375951
  ensembl transcript: ENST00000392102
  gene symbol: TTLL4
  hgvsc: ENST00000392102.1:c.3435delT
  hgvsp: ENSP00000375951.1:p.Gln1147ArgfsTer25
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000396555
  ensembl transcript: ENST00000442769
  gene symbol: TTLL4
  hgvsc: ENST00000442769.1:c.3243delT
  hgvsp: ENSP00000396555.1:p.Gln1083ArgfsTer25
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000393332
  ensembl transcript: ENST00000457313
  gene symbol: TTLL4
  hgvsc: ENST00000457313.1:c.2850-7delT
  variant of: http://identifiers.org/hgnc/28976
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3549
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2597
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4692
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4145
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4485
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6657
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4915
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1257
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6571
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5829
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 640
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4552
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 913
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5850
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1798
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2248
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1925
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1282
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2533
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40106
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Gln1147ArgfsTer25
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: African
population: Latino
population: Other
population: European (Finnish)
reference allele: AT
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: MQRankSum

2-219618951-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 219618951
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 219618951
    reference: chr 2
allele count: 1
allele frequency: 8.236689509752241e-6
allele num: 121408
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000258398
  ensembl transcript: ENST00000258398
  gene symbol: TTLL4
  hgvsc: ENST00000258398.4:c.3439C>T
  hgvsp: ENSP00000258398.4:p.Gln1147Ter
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135912
  ensembl transcript: ENST00000472527
  gene symbol: TTLL4
  hgvsc: ENST00000472527.1:n.269C>T
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000375951
  ensembl transcript: ENST00000392102
  gene symbol: TTLL4
  hgvsc: ENST00000392102.1:c.3439C>T
  hgvsp: ENSP00000375951.1:p.Gln1147Ter
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000400068
  ensembl transcript: ENST00000417855
  gene symbol: TTLL4
  hgvsc: ENST00000417855.1:c.416-3C>T
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000393332
  ensembl transcript: ENST00000457313
  gene symbol: TTLL4
  hgvsc: ENST00000457313.1:c.2850-3C>T
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000396555
  ensembl transcript: ENST00000442769
  gene symbol: TTLL4
  hgvsc: ENST00000442769.1:c.3247C>T
  hgvsp: ENSP00000396555.1:p.Gln1083Ter
  variant of: http://identifiers.org/hgnc/28976
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3549
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4486
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6570
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2247
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1257
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5828
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6658
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5850
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4551
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 914
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1798
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4146
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4914
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 640
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2597
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4692
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1282
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1199
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Gln1147Ter
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: DP

2-219618957-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 219618957
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 219618957
    reference: chr 2
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000375951
  ensembl transcript: ENST00000392102
  gene symbol: TTLL4
  hgvsc: ENST00000392102.1:c.3445C>T
  hgvsp: ENSP00000375951.1:p.Pro1149Ser
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000396555
  ensembl transcript: ENST00000442769
  gene symbol: TTLL4
  hgvsc: ENST00000442769.1:c.3253C>T
  hgvsp: ENSP00000396555.1:p.Pro1085Ser
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135912
  ensembl transcript: ENST00000472527
  gene symbol: TTLL4
  hgvsc: ENST00000472527.1:n.275C>T
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000393332
  ensembl transcript: ENST00000457313
  gene symbol: TTLL4
  hgvsc: ENST00000457313.1:c.2853C>T
  hgvsp: ENST00000457313.1:c.2853C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000400068
  ensembl transcript: ENST00000417855
  gene symbol: TTLL4
  hgvsc: ENST00000417855.1:c.419C>T
  hgvsp: ENST00000417855.1:c.419C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000258398
  ensembl transcript: ENST00000258398
  gene symbol: TTLL4
  hgvsc: ENST00000258398.4:c.3445C>T
  hgvsp: ENSP00000258398.4:p.Pro1149Ser
  variant of: http://identifiers.org/hgnc/28976
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 914
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5850
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1798
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4917
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6659
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4550
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4692
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5829
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1257
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4144
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6570
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 640
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4485
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2246
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3548
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2597
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1923
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2601
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40106
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8944
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Pro1149Ser
num of homozygotes: 0
population: Other
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum

2-219618961-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 219618961
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 219618961
    reference: chr 2
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000258398
  ensembl transcript: ENST00000258398
  gene symbol: TTLL4
  hgvsc: ENST00000258398.4:c.3449G>T
  hgvsp: ENSP00000258398.4:p.Ser1150Ile
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000375951
  ensembl transcript: ENST00000392102
  gene symbol: TTLL4
  hgvsc: ENST00000392102.1:c.3449G>T
  hgvsp: ENSP00000375951.1:p.Ser1150Ile
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000396555
  ensembl transcript: ENST00000442769
  gene symbol: TTLL4
  hgvsc: ENST00000442769.1:c.3257G>T
  hgvsp: ENSP00000396555.1:p.Ser1086Ile
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000400068
  ensembl transcript: ENST00000417855
  gene symbol: TTLL4
  hgvsc: ENST00000417855.1:c.423G>T
  hgvsp: ENSP00000400068.1:p.Val142Phe
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000393332
  ensembl transcript: ENST00000457313
  gene symbol: TTLL4
  hgvsc: ENST00000457313.1:c.2857G>T
  hgvsp: ENSP00000393332.1:p.Val953Phe
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135912
  ensembl transcript: ENST00000472527
  gene symbol: TTLL4
  hgvsc: ENST00000472527.1:n.279G>T
  variant of: http://identifiers.org/hgnc/28976
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1798
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2245
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 914
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4692
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6570
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6659
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4146
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4485
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4549
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5850
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5831
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 640
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2597
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1257
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3547
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4916
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1283
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2534
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1198
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2601
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Ser1150Ile
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Other
population: African
population: Latino
population: European (Finnish)
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: QD

2-219618965-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 219618965
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 219618965
    reference: chr 2
allele count: 28
allele frequency: 2.306273062730627e-4
allele num: 121408
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000396555
  ensembl transcript: ENST00000442769
  gene symbol: TTLL4
  hgvsc: ENST00000442769.1:c.3261C>T
  hgvsp: ENST00000442769.1:c.3261C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135912
  ensembl transcript: ENST00000472527
  gene symbol: TTLL4
  hgvsc: ENST00000472527.1:n.283C>T
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000393332
  ensembl transcript: ENST00000457313
  gene symbol: TTLL4
  hgvsc: ENST00000457313.1:c.2861C>T
  hgvsp: ENSP00000393332.1:p.Pro954Leu
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000375951
  ensembl transcript: ENST00000392102
  gene symbol: TTLL4
  hgvsc: ENST00000392102.1:c.3453C>T
  hgvsp: ENST00000392102.1:c.3453C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000400068
  ensembl transcript: ENST00000417855
  gene symbol: TTLL4
  hgvsc: ENST00000417855.1:c.427C>T
  hgvsp: ENSP00000400068.1:p.Pro143Leu
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000258398
  ensembl transcript: ENST00000258398
  gene symbol: TTLL4
  hgvsc: ENST00000258398.4:c.3453C>T
  hgvsp: ENST00000258398.4:c.3453C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28976
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5850
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4550
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4143
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4918
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2246
  bin: 9.75e1
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 4483
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1257
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6570
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1798
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 640
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4692
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3547
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5832
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6659
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2598
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 914
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40108
  bin: 9.75e1
  variant carriers: 28
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2601
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1199
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Pro143Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: South Asian
population: Other
population: East Asian
population: Latino
population: European (Finnish)
reference allele: C
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum

2-219618967-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 219618967
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 219618967
    reference: chr 2
allele count: 1
allele frequency: 8.236689509752241e-6
allele num: 121408
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000396555
  ensembl transcript: ENST00000442769
  gene symbol: TTLL4
  hgvsc: ENST00000442769.1:c.3263C>T
  hgvsp: ENSP00000396555.1:p.Ser1088Leu
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000375951
  ensembl transcript: ENST00000392102
  gene symbol: TTLL4
  hgvsc: ENST00000392102.1:c.3455C>T
  hgvsp: ENSP00000375951.1:p.Ser1152Leu
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135912
  ensembl transcript: ENST00000472527
  gene symbol: TTLL4
  hgvsc: ENST00000472527.1:n.285C>T
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000400068
  ensembl transcript: ENST00000417855
  gene symbol: TTLL4
  hgvsc: ENST00000417855.1:c.429C>T
  hgvsp: ENSP00000400068.1:p.Gln144Ter
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000258398
  ensembl transcript: ENST00000258398
  gene symbol: TTLL4
  hgvsc: ENST00000258398.4:c.3455C>T
  hgvsp: ENSP00000258398.4:p.Ser1152Leu
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000393332
  ensembl transcript: ENST00000457313
  gene symbol: TTLL4
  hgvsc: ENST00000457313.1:c.2863C>T
  hgvsp: ENSP00000393332.1:p.Gln955Ter
  variant of: http://identifiers.org/hgnc/28976
canonical: false
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1257
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2598
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3548
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6577
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2220
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4148
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 640
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6662
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 914
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4486
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4552
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4916
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5851
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5838
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4694
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1798
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1923
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1286
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2536
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2098
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Gln144Ter
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Latino
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: ReadPosRankSum

2-219618974-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 219618974
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 219618974
    reference: chr 2
allele count: 5
allele frequency: 4.118276912939626e-5
allele num: 121410
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000375951
  ensembl transcript: ENST00000392102
  gene symbol: TTLL4
  hgvsc: ENST00000392102.1:c.3462C>T
  hgvsp: ENST00000392102.1:c.3462C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000400068
  ensembl transcript: ENST00000417855
  gene symbol: TTLL4
  hgvsc: ENST00000417855.1:c.436C>T
  hgvsp: ENSP00000400068.1:p.Thr146Ile
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000258398
  ensembl transcript: ENST00000258398
  gene symbol: TTLL4
  hgvsc: ENST00000258398.4:c.3462C>T
  hgvsp: ENST00000258398.4:c.3462C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000396555
  ensembl transcript: ENST00000442769
  gene symbol: TTLL4
  hgvsc: ENST00000442769.1:c.3270C>T
  hgvsp: ENST00000442769.1:c.3270C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000393332
  ensembl transcript: ENST00000457313
  gene symbol: TTLL4
  hgvsc: ENST00000457313.1:c.2870C>T
  hgvsp: ENSP00000393332.1:p.Thr957Ile
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135912
  ensembl transcript: ENST00000472527
  gene symbol: TTLL4
  hgvsc: ENST00000472527.1:n.292C>T
  variant of: http://identifiers.org/hgnc/28976
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5852
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5838
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6661
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3548
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2598
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2219
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 4148
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1257
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1798
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6576
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 914
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4694
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4551
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 640
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4487
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4918
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2531
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1919
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2606
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Thr146Ile
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: Other
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: QD
site quality: BaseQRankSum

2-219618975-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 219618975
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 219618975
    reference: chr 2
allele count: 4
allele frequency: 3.294621530351701e-5
allele num: 121410
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000393332
  ensembl transcript: ENST00000457313
  gene symbol: TTLL4
  hgvsc: ENST00000457313.1:c.2871A>G
  hgvsp: ENST00000457313.1:c.2871A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000258398
  ensembl transcript: ENST00000258398
  gene symbol: TTLL4
  hgvsc: ENST00000258398.4:c.3463A>G
  hgvsp: ENSP00000258398.4:p.Ser1155Gly
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000375951
  ensembl transcript: ENST00000392102
  gene symbol: TTLL4
  hgvsc: ENST00000392102.1:c.3463A>G
  hgvsp: ENSP00000375951.1:p.Ser1155Gly
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000396555
  ensembl transcript: ENST00000442769
  gene symbol: TTLL4
  hgvsc: ENST00000442769.1:c.3271A>G
  hgvsp: ENSP00000396555.1:p.Ser1091Gly
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000400068
  ensembl transcript: ENST00000417855
  gene symbol: TTLL4
  hgvsc: ENST00000417855.1:c.437A>G
  hgvsp: ENST00000417855.1:c.437A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135912
  ensembl transcript: ENST00000472527
  gene symbol: TTLL4
  hgvsc: ENST00000472527.1:n.293A>G
  variant of: http://identifiers.org/hgnc/28976
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4488
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4695
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6662
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2598
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 640
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4918
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3548
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 914
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5853
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2214
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 6576
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1798
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4554
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4147
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5837
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1257
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2099
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1198
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2531
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Ser1155Gly
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
population: Other
reference allele: A
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff

2-219618978-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 219618978
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 219618978
    reference: chr 2
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000396555
  ensembl transcript: ENST00000442769
  gene symbol: TTLL4
  hgvsc: ENST00000442769.1:c.3274G>A
  hgvsp: ENSP00000396555.1:p.Glu1092Lys
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000258398
  ensembl transcript: ENST00000258398
  gene symbol: TTLL4
  hgvsc: ENST00000258398.4:c.3466G>A
  hgvsp: ENSP00000258398.4:p.Glu1156Lys
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000393332
  ensembl transcript: ENST00000457313
  gene symbol: TTLL4
  hgvsc: ENST00000457313.1:c.2874G>A
  hgvsp: ENST00000457313.1:c.2874G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000400068
  ensembl transcript: ENST00000417855
  gene symbol: TTLL4
  hgvsc: ENST00000417855.1:c.440G>A
  hgvsp: ENST00000417855.1:c.440G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135912
  ensembl transcript: ENST00000472527
  gene symbol: TTLL4
  hgvsc: ENST00000472527.1:n.296G>A
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000375951
  ensembl transcript: ENST00000392102
  gene symbol: TTLL4
  hgvsc: ENST00000392102.1:c.3466G>A
  hgvsp: ENSP00000375951.1:p.Glu1156Lys
  variant of: http://identifiers.org/hgnc/28976
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1798
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3548
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6576
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4695
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4916
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4148
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4555
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5837
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 640
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2210
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6664
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1257
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2599
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 914
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4489
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5852
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2532
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1918
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40093
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1198
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2099
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Glu1156Lys
num of homozygotes: 0
population: African
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
reference allele: G
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD

2-219619005-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 219619005
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 219619005
    reference: chr 2
allele count: 4
allele frequency: 3.294730079238259e-5
allele num: 121406
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000396555
  ensembl transcript: ENST00000442769
  gene symbol: TTLL4
  hgvsc: ENST00000442769.1:c.3301T>G
  hgvsp: ENSP00000396555.1:p.Ser1101Ala
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000393332
  ensembl transcript: ENST00000457313
  gene symbol: TTLL4
  hgvsc: ENST00000457313.1:c.2901T>G
  hgvsp: ENSP00000393332.1:p.Phe967Leu
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000258398
  ensembl transcript: ENST00000258398
  gene symbol: TTLL4
  hgvsc: ENST00000258398.4:c.3493T>G
  hgvsp: ENSP00000258398.4:p.Ser1165Ala
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000375951
  ensembl transcript: ENST00000392102
  gene symbol: TTLL4
  hgvsc: ENST00000392102.1:c.3493T>G
  hgvsp: ENSP00000375951.1:p.Ser1165Ala
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000400068
  ensembl transcript: ENST00000417855
  gene symbol: TTLL4
  hgvsc: ENST00000417855.1:c.467T>G
  hgvsp: ENSP00000400068.1:p.Phe156Leu
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135912
  ensembl transcript: ENST00000472527
  gene symbol: TTLL4
  hgvsc: ENST00000472527.1:n.323T>G
  variant of: http://identifiers.org/hgnc/28976
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5852
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 914
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4695
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4553
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2599
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3548
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4490
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2209
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 4140
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6577
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4915
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6663
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5837
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1257
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1798
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 640
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1195
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2096
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1919
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Ser1165Ala
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
population: African
population: Latino
population: European (Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: VQSLOD

2-219619013-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 219619013
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 219619013
    reference: chr 2
allele count: 1
allele frequency: 8.236825198095647e-6
allele num: 121406
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000393332
  ensembl transcript: ENST00000457313
  gene symbol: TTLL4
  hgvsc: ENST00000457313.1:c.2909G>T
  hgvsp: ENSP00000393332.1:p.Arg970Ile
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000258398
  ensembl transcript: ENST00000258398
  gene symbol: TTLL4
  hgvsc: ENST00000258398.4:c.3501G>T
  hgvsp: ENSP00000258398.4:p.Gln1167His
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000396555
  ensembl transcript: ENST00000442769
  gene symbol: TTLL4
  hgvsc: ENST00000442769.1:c.3309G>T
  hgvsp: ENSP00000396555.1:p.Gln1103His
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000400068
  ensembl transcript: ENST00000417855
  gene symbol: TTLL4
  hgvsc: ENST00000417855.1:c.475G>T
  hgvsp: ENSP00000400068.1:p.Arg159Ile
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135912
  ensembl transcript: ENST00000472527
  gene symbol: TTLL4
  hgvsc: ENST00000472527.1:n.331G>T
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000375951
  ensembl transcript: ENST00000392102
  gene symbol: TTLL4
  hgvsc: ENST00000392102.1:c.3501G>T
  hgvsp: ENSP00000375951.1:p.Gln1167His
  variant of: http://identifiers.org/hgnc/28976
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5837
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4491
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2205
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4911
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6664
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4139
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1798
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6577
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3549
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5851
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2599
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4553
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 914
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4698
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1257
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 640
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1286
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8947
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2606
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Gln1167His
num of homozygotes: 0
population: Other
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
reference allele: G
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: DP

2-219619015-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 219619015
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 219619015
    reference: chr 2
allele count: 10
allele frequency: 8.236825198095645e-5
allele num: 121406
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000396555
  ensembl transcript: ENST00000442769
  gene symbol: TTLL4
  hgvsc: ENST00000442769.1:c.3311C>T
  hgvsp: ENSP00000396555.1:p.Thr1104Met
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000393332
  ensembl transcript: ENST00000457313
  gene symbol: TTLL4
  hgvsc: ENST00000457313.1:c.2911C>T
  hgvsp: ENSP00000393332.1:p.Arg971Cys
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135912
  ensembl transcript: ENST00000472527
  gene symbol: TTLL4
  hgvsc: ENST00000472527.1:n.333C>T
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000400068
  ensembl transcript: ENST00000417855
  gene symbol: TTLL4
  hgvsc: ENST00000417855.1:c.477C>T
  hgvsp: ENSP00000400068.1:p.Arg160Cys
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000258398
  ensembl transcript: ENST00000258398
  gene symbol: TTLL4
  hgvsc: ENST00000258398.4:c.3503C>T
  hgvsp: ENSP00000258398.4:p.Thr1168Met
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000375951
  ensembl transcript: ENST00000392102
  gene symbol: TTLL4
  hgvsc: ENST00000392102.1:c.3503C>T
  hgvsp: ENSP00000375951.1:p.Thr1168Met
  variant of: http://identifiers.org/hgnc/28976
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1798
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4494
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4136
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4697
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5835
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6664
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2204
  bin: 9.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 4558
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2599
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 640
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 914
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3549
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1257
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4910
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6578
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5851
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1919
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1286
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1194
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8951
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Thr1168Met
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: South Asian
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum

2-219619016-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 219619016
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 219619016
    reference: chr 2
allele count: 121
allele frequency: 9.966558489695732e-4
allele num: 121406
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000400068
  ensembl transcript: ENST00000417855
  gene symbol: TTLL4
  hgvsc: ENST00000417855.1:c.478G>A
  hgvsp: ENSP00000400068.1:p.Arg160His
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000393332
  ensembl transcript: ENST00000457313
  gene symbol: TTLL4
  hgvsc: ENST00000457313.1:c.2912G>A
  hgvsp: ENSP00000393332.1:p.Arg971His
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000375951
  ensembl transcript: ENST00000392102
  gene symbol: TTLL4
  hgvsc: ENST00000392102.1:c.3504G>A
  hgvsp: ENST00000392102.1:c.3504G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135912
  ensembl transcript: ENST00000472527
  gene symbol: TTLL4
  hgvsc: ENST00000472527.1:n.334G>A
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000258398
  ensembl transcript: ENST00000258398
  gene symbol: TTLL4
  hgvsc: ENST00000258398.4:c.3504G>A
  hgvsp: ENST00000258398.4:c.3504G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28976
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135912
  ensembl protein: ENSP00000396555
  ensembl transcript: ENST00000442769
  gene symbol: TTLL4
  hgvsc: ENST00000442769.1:c.3312G>A
  hgvsp: ENST00000442769.1:c.3312G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28976
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4556
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5836
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4906
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4697
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6578
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3545
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2208
  bin: 9.75e1
  variant carriers: 98
genotype depth: GenotypeDepth
  all individuals: 6661
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2605
  bin: 7.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 4493
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1799
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1258
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4132
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5854
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 914
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40101
  bin: 9.75e1
  variant carriers: 120
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2093
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Arg160His
num of homozygotes: 1
reference allele: G

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 45067
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1098
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2013
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1888
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1907
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1244
bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66706
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.211827435773146e-4
allele num: 16504
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.502e0

DP
type: SiteQuality
SIO_000300: 3.720891e6

VQSLOD
type: SiteQuality
SIO_000300: -9.513e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.91e0

MQRankSum
type: SiteQuality
SIO_000300: -5.0e-2

FS
type: SiteQuality
SIO_000300: 9.973000000000001e0

MQ
type: SiteQuality
SIO_000300: 5.948e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.69e-1

QD
type: SiteQuality
SIO_000300: 1.345e1

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1098
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1887
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1246
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1907
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 45067
bin: 9.75e1
variant carriers: 5

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66710
num of homozygotes: 0

Latino
type: Population
allele count: 5
allele frequency: 4.318535152876144e-4
allele num: 11578
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 3.721441e6

MQ
type: SiteQuality
SIO_000300: 5.851e1

VQSLOD
type: SiteQuality
SIO_000300: 2.65e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.57e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.74e-2

FS
type: SiteQuality
SIO_000300: 1.144e0

QD
type: SiteQuality
SIO_000300: 1.601e1

MQRankSum
type: SiteQuality
SIO_000300: -6.58e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.74e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.06e-1

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2520
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4913
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1888
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2008
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1910
bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498621268433042e-5
allele num: 66728
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.931e1

FS
type: SiteQuality
SIO_000300: 4.215e0

DP
type: SiteQuality
SIO_000300: 3.720924e6

QD
type: SiteQuality
SIO_000300: 1.257e1

VQSLOD
type: SiteQuality
SIO_000300: -5.9e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -5.861e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.13e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.114e0

MQRankSum
type: SiteQuality
SIO_000300: 4.13e-1

GenotypeQuality
all individuals: 1888
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2522
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1251
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2008
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 45068
bin: 9.75e1
variant carriers: 8

GenotypeQuality
all individuals: 3
bin: 5.75e1
variant carriers: 0

Latino
type: Population
allele count: 6
allele frequency: 5.182242183451373e-4
allele num: 11578
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66736
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.211387038158692e-4
allele num: 16510
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.91e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.42e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.96e-1

MQ
type: SiteQuality
SIO_000300: 5.948e1

QD
type: SiteQuality
SIO_000300: 1.239e1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.69e-1

FS
type: SiteQuality
SIO_000300: 5.22e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.01e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 3.721953e6

GenotypeQuality
all individuals: 3
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1251
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2522
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1910
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1888
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 4.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498441620714457e-5
allele num: 66736
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.01e0

QD
type: SiteQuality
SIO_000300: 1.239e1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.69e-1

FS
type: SiteQuality
SIO_000300: 5.22e-1

MQ
type: SiteQuality
SIO_000300: 5.948e1

MQRankSum
type: SiteQuality
SIO_000300: 2.91e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.96e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.42e0

DP
type: SiteQuality
SIO_000300: 3.721953e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 4
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2522
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 45065
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1098
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4927
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1889
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498441620714457e-5
allele num: 66736
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.358e1

DP
type: SiteQuality
SIO_000300: 3.720467e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 4.85e-1

MQ
type: SiteQuality
SIO_000300: 5.984e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.6e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.082e0

FS
type: SiteQuality
SIO_000300: 3.263e0

MQRankSum
type: SiteQuality
SIO_000300: 1.04e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.26e-1

GenotypeQuality
all individuals: 7
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1098
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2010
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1890
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1910
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1249
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 45064
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2524
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.4983967155144e-5
allele num: 66738
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 3.720446e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -5.25e-1

FS
type: SiteQuality
SIO_000300: 1.111e0

MQ
type: SiteQuality
SIO_000300: 5.951e1

QD
type: SiteQuality
SIO_000300: 1.17e1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.15e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.98e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.494e0

VQSLOD
type: SiteQuality
SIO_000300: -3.173e-1

GenotypeQuality
all individuals: 1888
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4929
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2008
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 45065
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 1909
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 3.75e1
variant carriers: 0

Latino
type: Population
allele count: 4
allele frequency: 3.454828122300915e-4
allele num: 11578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66736
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.3e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.952e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.45e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.235e0

DP
type: SiteQuality
SIO_000300: 3.720405e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.15e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 2.08e0

QD
type: SiteQuality
SIO_000300: 1.28e1

GenotypeQuality
all individuals: 1
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1888
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1907
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1249
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 45085
bin: 9.75e1
variant carriers: 60

GenotypeQuality
all individuals: 2006
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 59
allele frequency: 8.840805562215296e-4
allele num: 66736
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.637070305752289e-5
allele num: 11578
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -9.3e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.81e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.04e-1

MQ
type: SiteQuality
SIO_000300: 5.963e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

FS
type: SiteQuality
SIO_000300: 1.152e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.69e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.35e0

QD
type: SiteQuality
SIO_000300: 1.302e1

DP
type: SiteQuality
SIO_000300: 3.724078e6

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1889
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2010
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1247
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4933
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2532
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 45053
bin: 9.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.4983967155144e-5
allele num: 66738
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.68e-1

QD
type: SiteQuality
SIO_000300: 1.415e1

DP
type: SiteQuality
SIO_000300: 3.717085e6

BaseQRankSum
type: SiteQuality
SIO_000300: 4.86e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 5.0e-3

MQ
type: SiteQuality
SIO_000300: 5.961e1

VQSLOD
type: SiteQuality
SIO_000300: 1.64e0

FS
type: SiteQuality
SIO_000300: 1.981e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.9e0

GenotypeQuality
all individuals: 3
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1889
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1247
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2010
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 45053
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1098
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.996793431028799e-5
allele num: 66738
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.681e0

MQRankSum
type: SiteQuality
SIO_000300: 3.2e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.473e1

FS
type: SiteQuality
SIO_000300: 1.02e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.72e-1

DP
type: SiteQuality
SIO_000300: 3.717023e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.27e0

VQSLOD
type: SiteQuality
SIO_000300: -1.08e0

MQ
type: SiteQuality
SIO_000300: 5.979e1

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2521
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 2.25e1
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GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 45057
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variant carriers: 238

GenotypeQuality
all individuals: 1889
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variant carriers: 0

GenotypeQuality
all individuals: 1910
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 3.25e1
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GenotypeQuality
all individuals: 1097
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variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 2.75e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 9.609840476648087e-5
allele num: 10406
num of homozygotes: 0

Latino
type: Population
allele count: 236
allele frequency: 2.038700760193504e-2
allele num: 11576
num of homozygotes: 1

Other
type: Population
allele count: 2
allele frequency: 2.202643171806168e-3
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66734
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 5.07e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.1e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.77e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.72e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.61e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.17e-1

MQ
type: SiteQuality
SIO_000300: 5.969e1

DP
type: SiteQuality
SIO_000300: 3.722412e6

QD
type: SiteQuality
SIO_000300: 1.551e1

GenotypeQuality
all individuals: 2524
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2015
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variant carriers: 0

GenotypeQuality
all individuals: 1105
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 5
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variant carriers: 0

GenotypeQuality
all individuals: 7
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variant carriers: 0

GenotypeQuality
all individuals: 1909
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498486528606108e-5
allele num: 66734
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.19e-1

DP
type: SiteQuality
SIO_000300: 3.695024e6

QD
type: SiteQuality
SIO_000300: 1.618e1

MQ
type: SiteQuality
SIO_000300: 5.954e1

FS
type: SiteQuality
SIO_000300: 5.97e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.69e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.66e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 2.04e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.0e0

GenotypeQuality
all individuals: 1915
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1910
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2510
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4845
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variant carriers: 0

GenotypeQuality
all individuals: 20
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variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23
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variant carriers: 0

GenotypeQuality
all individuals: 47
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variant carriers: 0

GenotypeQuality
all individuals: 18
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variant carriers: 0

GenotypeQuality
all individuals: 1240
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44996
bin: 9.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498756032493031e-5
allele num: 66722
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.5991e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.34e0

MQRankSum
type: SiteQuality
SIO_000300: 1.24e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.989e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.231e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.242e0

VQSLOD
type: SiteQuality
SIO_000300: -2.357e0

QD
type: SiteQuality
SIO_000300: 1.594e1

DP
type: SiteQuality
SIO_000300: 3.694299e6

GenotypeQuality
all individuals: 14
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1910
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2014
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variant carriers: 0

GenotypeQuality
all individuals: 1234
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44996
bin: 9.75e1
variant carriers: 8

GenotypeQuality
all individuals: 12
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1104
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 8
allele frequency: 1.199004825994425e-4
allele num: 66722
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.79e-1

MQ
type: SiteQuality
SIO_000300: 5.957e1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.69e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.22e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.582e1

DP
type: SiteQuality
SIO_000300: 3.69387e6

ClippingRankSum
type: SiteQuality
SIO_000300: -7.54e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.74e-1

GenotypeQuality
all individuals: 14
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
all individuals: 27
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variant carriers: 0

GenotypeQuality
all individuals: 1912
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variant carriers: 0

GenotypeQuality
all individuals: 2
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variant carriers: 0

GenotypeQuality
all individuals: 20
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variant carriers: 0

GenotypeQuality
all individuals: 26
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variant carriers: 0

GenotypeQuality
all individuals: 44995
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variant carriers: 27

GenotypeQuality
all individuals: 10
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variant carriers: 0

GenotypeQuality
all individuals: 4856
bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66716
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Latino
type: Population
allele count: 27
allele frequency: 2.332814930015552e-3
allele num: 11574
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -5.1e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.12e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.837e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.24e-1

MQ
type: SiteQuality
SIO_000300: 5.975e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 4.23e0

QD
type: SiteQuality
SIO_000300: 1.421e1

DP
type: SiteQuality
SIO_000300: 3.693101e6

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
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variant carriers: 0

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
all individuals: 44985
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variant carriers: 2

GenotypeQuality
all individuals: 27
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variant carriers: 0

GenotypeQuality
all individuals: 1915
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variant carriers: 0

GenotypeQuality
all individuals: 7
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variant carriers: 0

GenotypeQuality
all individuals: 20
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variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2011
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.997961386257345e-5
allele num: 66712
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.345e0

MQRankSum
type: SiteQuality
SIO_000300: -4.7e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -6.79e-1

MQ
type: SiteQuality
SIO_000300: 5.967e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.79e-1

QD
type: SiteQuality
SIO_000300: 1.495e1

VQSLOD
type: SiteQuality
SIO_000300: 3.72e0

DP
type: SiteQuality
SIO_000300: 3.690769e6

GenotypeQuality
all individuals: 2010
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1910
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1228
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44984
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 22
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4824
bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.49902563333833e-5
allele num: 66710
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.389e1

MQRankSum
type: SiteQuality
SIO_000300: -9.46e-1

DP
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

VQSLOD
type: SiteQuality
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FS
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.982e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.599999999999999e-2

BaseQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 2.3e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4828
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1910
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 3.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66704
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.05766900896535e-5
allele num: 16508
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.9e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -1.987e0

VQSLOD
type: SiteQuality
SIO_000300: -9.810000000000001e-2

BaseQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
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QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 2.14e0

DP
type: SiteQuality
SIO_000300: 3.690764e6

GenotypeQuality
all individuals: 121
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 94
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44977
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1226
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1905
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2463
bin: 6.75e1
variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499295331194339e-5
allele num: 66698
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.743e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.75e0

DP
type: SiteQuality
SIO_000300: 3.688543e6

MQ
type: SiteQuality
SIO_000300: 5.656e1

InbreedingCoeff
type: SiteQuality
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VQSLOD
type: SiteQuality
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MQRankSum
type: SiteQuality
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QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 3.93e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1101
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 15
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variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44976
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 4538
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 134
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1993
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.999490086685263e-5
allele num: 66678
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.83e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.188e0

FS
type: SiteQuality
SIO_000300: 1.2275e1

DP
type: SiteQuality
SIO_000300: 3.686709e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.6e-3

VQSLOD
type: SiteQuality
SIO_000300: -1.378e0

QD
type: SiteQuality
SIO_000300: 1.459e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.5e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.83e-1

GenotypeQuality
all individuals: 28
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 341
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1088
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1856
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44946
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3627
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 212
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1896
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.51285930408472e-4
allele num: 6610
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66640
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10392
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16496
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 3.676164e6

MQ
type: SiteQuality
SIO_000300: 5.926e1

MQRankSum
type: SiteQuality
SIO_000300: 2.0e-2

QD
type: SiteQuality
SIO_000300: 1.374e1

VQSLOD
type: SiteQuality
SIO_000300: 1.26e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.9e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.0e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.6e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -9.095000000000001e0

GenotypeQuality
all individuals: 1899
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1156
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1891
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2133
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1080
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 210
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44942
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1851
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 258
bin: 5.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16484
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10396
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.159017153453871e-4
allele num: 8628
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66618
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.913e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.63e0

FS
type: SiteQuality
SIO_000300: 1.381e0

DP
type: SiteQuality
SIO_000300: 3.675327e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.6e-3

MQRankSum
type: SiteQuality
SIO_000300: -1.5e0

QD
type: SiteQuality
SIO_000300: 1.444e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.11e-1

VQSLOD
type: SiteQuality
SIO_000300: -7.683e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.29e-1

GenotypeQuality
all individuals: 135
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 215
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 397
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2115
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1848
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1896
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 280
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44940
bin: 9.75e1
variant carriers: 2

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.003453972067878e-5
allele num: 66590
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10396
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16462
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.97e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.1e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 5.27e0

MQ
type: SiteQuality
SIO_000300: 6.101e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.36e0

MQRankSum
type: SiteQuality
SIO_000300: -3.69e-1

QD
type: SiteQuality
SIO_000300: 1.635e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.52e-1

DP
type: SiteQuality
SIO_000300: 3.673346e6

GenotypeQuality
all individuals: 2060
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 112
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 178
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1907
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 44926
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1892
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1084
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1137
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 288
bin: 4.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66600
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.632055480639569e-5
allele num: 10382
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16456
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.1e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.72e0

VQSLOD
type: SiteQuality
SIO_000300: 1.76e0

MQ
type: SiteQuality
SIO_000300: 5.971e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.74e-1

DP
type: SiteQuality
SIO_000300: 3.669618e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.3e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.429e1

MQRankSum
type: SiteQuality
SIO_000300: -5.1e-2

GenotypeQuality
all individuals: 405
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1846
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 307
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 216
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1892
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2060
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 44926
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 178
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 521
bin: 4.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10382
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.501501501501501e-5
allele num: 66600
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16456
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.429e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.74e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.1e0

MQ
type: SiteQuality
SIO_000300: 5.971e1

DP
type: SiteQuality
SIO_000300: 3.669618e6

MQRankSum
type: SiteQuality
SIO_000300: -5.1e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.76e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.3e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 2.72e0

GenotypeQuality
all individuals: 304
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 205
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 627
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1122
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1887
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1890
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2992
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2016
bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.319109461966605e-4
allele num: 8624
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11552
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10384
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66586
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16462
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -2.62e-1

FS
type: SiteQuality
SIO_000300: 6.18e0

BaseQRankSum
type: SiteQuality
SIO_000300: 8.42e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.6e-1

DP
type: SiteQuality
SIO_000300: 3.668352e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 1.55e0

MQ
type: SiteQuality
SIO_000300: 6.051e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.53e-1

QD
type: SiteQuality
SIO_000300: 1.31e1

GenotypeQuality
all individuals: 5311
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 194
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1272
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2272
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 618
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1148
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 659
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2082
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2572
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40272
bin: 9.75e1
variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10336
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.15606936416185e-4
allele num: 8650
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66498
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16070
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

MQ
type: SiteQuality
SIO_000300: 6.005e1

FS
type: SiteQuality
SIO_000300: 6.074e0

MQRankSum
type: SiteQuality
SIO_000300: -1.304e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.652e0

QD
type: SiteQuality
SIO_000300: 1.915e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.32e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.32e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.437e0

DP
type: SiteQuality
SIO_000300: 3.173639e6

GenotypeQuality
all individuals: 29
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2281
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2072
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2569
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1272
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 99
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 363
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40271
bin: 9.75e1
variant carriers: 5

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10336
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66506
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 5
allele frequency: 3.098661378284581e-4
allele num: 16136
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

FS
type: SiteQuality
SIO_000300: 2.109e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.46e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.27e0

QD
type: SiteQuality
SIO_000300: 1.203e1

VQSLOD
type: SiteQuality
SIO_000300: 1.21e0

MQ
type: SiteQuality
SIO_000300: 5.96e1

MQRankSum
type: SiteQuality
SIO_000300: -1.27e-1

DP
type: SiteQuality
SIO_000300: 3.175705e6

ClippingRankSum
type: SiteQuality
SIO_000300: -8.67e-1

GenotypeQuality
all individuals: 29
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2288
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1146
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1895
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 468
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1271
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 408
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2072
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10340
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66514
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.643042350907519e-5
allele num: 11570
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16134
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.653e0

VQSLOD
type: SiteQuality
SIO_000300: -4.754e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.178e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.67e0

QD
type: SiteQuality
SIO_000300: 3.2e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

FS
type: SiteQuality
SIO_000300: 9.612e0

MQ
type: SiteQuality
SIO_000300: 5.478e1

DP
type: SiteQuality
SIO_000300: 3.177006e6

MQRankSum
type: SiteQuality
SIO_000300: -4.901e0

GenotypeQuality
all individuals: 170
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40271
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1896
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 5.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.502945773716484e-5
allele num: 66536
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10338
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16192
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.988e1

VQSLOD
type: SiteQuality
SIO_000300: -5.527e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 2.09e0

DP
type: SiteQuality
SIO_000300: 3.183449e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.97e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.768e0

FS
type: SiteQuality
SIO_000300: 2.099e0

QD
type: SiteQuality
SIO_000300: 1.209e1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.94e-1

GenotypeQuality
all individuals: 1269
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2567
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 148
bin: 4.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.502900598154438e-5
allele num: 66538
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10346
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16216
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.96e0

FS
type: SiteQuality
SIO_000300: 9.444000000000001e0

DP
type: SiteQuality
SIO_000300: 3.185516e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.9e-2

MQ
type: SiteQuality
SIO_000300: 5.632e1

VQSLOD
type: SiteQuality
SIO_000300: -1.623e0

MQRankSum
type: SiteQuality
SIO_000300: -5.721e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.17e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

QD
type: SiteQuality
SIO_000300: 3.3e-1

GenotypeQuality
all individuals: 30
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 76
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1917
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 5.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.501456412720339e-5
allele num: 66602
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16424
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10372
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.529e1

VQSLOD
type: SiteQuality
SIO_000300: 6.65e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.7e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.32e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.1e-1

FS
type: SiteQuality
SIO_000300: 4.193e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.59e0

MQ
type: SiteQuality
SIO_000300: 5.967e1

DP
type: SiteQuality
SIO_000300: 3.198729e6

BaseQRankSum
type: SiteQuality
SIO_000300: 4.6e0

GenotypeQuality
all individuals: 37
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1272
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 117
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variant carriers: 0

GenotypeQuality
all individuals: 6
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variant carriers: 0

GenotypeQuality
all individuals: 2456
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2076
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16442
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.63948332369385e-5
allele num: 10374
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66630
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 6.48e-1

DP
type: SiteQuality
SIO_000300: 3.200413e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.017e0

VQSLOD
type: SiteQuality
SIO_000300: 4.38e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.46e0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.53e-1

QD
type: SiteQuality
SIO_000300: 1.049e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.88e-2

FS
type: SiteQuality
SIO_000300: 4.936e0

MQ
type: SiteQuality
SIO_000300: 5.972e1

GenotypeQuality
all individuals: 86
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2079
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2469
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1191
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1915
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variant carriers: 0

GenotypeQuality
all individuals: 2566
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1272
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66642
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.071645415907711e-5
allele num: 16470
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10388
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.28e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.52e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.77e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.06e-2

FS
type: SiteQuality
SIO_000300: 1.475e0

MQ
type: SiteQuality
SIO_000300: 5.989e1

MQRankSum
type: SiteQuality
SIO_000300: 3.78e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.738e0

DP
type: SiteQuality
SIO_000300: 3.201681e6

QD
type: SiteQuality
SIO_000300: 1.156e1

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40269
bin: 9.75e1
variant carriers: 34

GenotypeQuality
all individuals: 15
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2075
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
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variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1273
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8784
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 4.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 30
allele frequency: 4.497885993583016e-4
allele num: 66698
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

Latino
type: Population
allele count: 4
allele frequency: 3.454828122300915e-4
allele num: 11578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 3.205226e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.626e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.5e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.370000000000001e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.29e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.6e0

QD
type: SiteQuality
SIO_000300: 1.167e1

MQRankSum
type: SiteQuality
SIO_000300: 3.79e-1

MQ
type: SiteQuality
SIO_000300: 5.958e1

GenotypeQuality
all individuals: 11
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1274
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 10
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 29
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 7
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
all individuals: 2570
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66706
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.64e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -4.34e-1

QD
type: SiteQuality
SIO_000300: 1.255e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.14e-1

FS
type: SiteQuality
SIO_000300: 1.658e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.21e-1

DP
type: SiteQuality
SIO_000300: 3.199304e6

MQRankSum
type: SiteQuality
SIO_000300: -7.23e-1

MQ
type: SiteQuality
SIO_000300: 5.93e1

GenotypeQuality
all individuals: 2570
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2075
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
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variant carriers: 0

GenotypeQuality
all individuals: 2520
bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.997691777331455e-5
allele num: 66718
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 3.199584e6

FS
type: SiteQuality
SIO_000300: 1.975e0

MQ
type: SiteQuality
SIO_000300: 5.969e1

VQSLOD
type: SiteQuality
SIO_000300: 8.41e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.11e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.82e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -1.033e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.08e-1

QD
type: SiteQuality
SIO_000300: 1.369e1

GenotypeQuality
all individuals: 2570
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
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variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 7
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variant carriers: 0

GenotypeQuality
all individuals: 1916
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 4
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variant carriers: 0

GenotypeQuality
all individuals: 2076
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66722
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.637070305752289e-5
allele num: 11578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.031e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.497e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.105e0

VQSLOD
type: SiteQuality
SIO_000300: 3.45e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.2e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.942e1

FS
type: SiteQuality
SIO_000300: 5.854e0

MQRankSum
type: SiteQuality
SIO_000300: -3.4e-2

DP
type: SiteQuality
SIO_000300: 3.199548e6

GenotypeQuality
all individuals: 2572
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2518
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1194
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2
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variant carriers: 0

GenotypeQuality
all individuals: 2077
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variant carriers: 0

GenotypeQuality
all individuals: 7
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variant carriers: 0

GenotypeQuality
all individuals: 8860
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66734
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

MQRankSum
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SIO_000300: -4.87e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.28e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.31e0

VQSLOD
type: SiteQuality
SIO_000300: 4.04e-1

QD
type: SiteQuality
SIO_000300: 1.598e1

MQ
type: SiteQuality
SIO_000300: 5.955e1

DP
type: SiteQuality
SIO_000300: 3.199842e6

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.25e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1914
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GenotypeQuality
all individuals: 2077
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498486528606108e-5
allele num: 66734
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.598e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.955e1

VQSLOD
type: SiteQuality
SIO_000300: 4.04e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.28e0

DP
type: SiteQuality
SIO_000300: 3.199842e6

MQRankSum
type: SiteQuality
SIO_000300: -4.87e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.25e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 1.31e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

Latino
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allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056935190793458e-5
allele num: 16510
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66734
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

InbreedingCoeff
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SIO_000300: -1.0e-4

FS
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SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.61e-1

BaseQRankSum
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SIO_000300: -4.796e0

VQSLOD
type: SiteQuality
SIO_000300: 2.81e-1

QD
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ReadPosRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: -1.063e0

MQ
type: SiteQuality
SIO_000300: 5.941e1

DP
type: SiteQuality
SIO_000300: 3.199581e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 9.609840476648087e-5
allele num: 10406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66734
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.039e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -8.19e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.92e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.17e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.53e0

FS
type: SiteQuality
SIO_000300: 1.79e0

QD
type: SiteQuality
SIO_000300: 1.747e1

MQRankSum
type: SiteQuality
SIO_000300: 1.02e0

DP
type: SiteQuality
SIO_000300: 3.199589e6

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 195

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 187
allele frequency: 2.802085830736034e-3
allele num: 66736
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 4
allele frequency: 6.047777441790142e-4
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 4
allele frequency: 3.844675124951942e-4
allele num: 10404
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.352e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.8e-3

VQSLOD
type: SiteQuality
SIO_000300: 6.14e0

MQ
type: SiteQuality
SIO_000300: 5.968e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.77e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.41e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.036e0

DP
type: SiteQuality
SIO_000300: 3.205318e6

MQRankSum
type: SiteQuality
SIO_000300: 2.9e-1

GenotypeQuality
all individuals: 5
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.996883241428914e-5
allele num: 66736
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.809e0

VQSLOD
type: SiteQuality
SIO_000300: 3.49e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.37e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 1.59e0

MQ
type: SiteQuality
SIO_000300: 5.981e1

DP
type: SiteQuality
SIO_000300: 3.174931e6

BaseQRankSum
type: SiteQuality
SIO_000300: 5.9e0

QD
type: SiteQuality
SIO_000300: 1.394e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.97e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 40214
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variant carriers: 1

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.637070305752289e-5
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66738
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
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ReadPosRankSum
type: SiteQuality
SIO_000300: 1.07e0

VQSLOD
type: SiteQuality
SIO_000300: 5.98e-1

FS
type: SiteQuality
SIO_000300: 1.244e0

DP
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.976e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.052e0

MQRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: 1.67e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 13

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 1.04887770086008e-4
allele num: 66738
num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 8.637070305752289e-5
allele num: 11578
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.101321585903084e-3
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 2.882952142994427e-4
allele num: 10406
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.511944360447536e-4
allele num: 6614
num of homozygotes: 0

East Asian
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allele count: 0
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num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.13e0

QD
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SIO_000300: 1.369e1

MQRankSum
type: SiteQuality
SIO_000300: 3.3e-1

MQ
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -6.05e-1

InbreedingCoeff
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 5.27e-1

BaseQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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DP
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
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allele frequency: 0.0e0
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South Asian
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East Asian
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 2
allele frequency: 2.996883241428914e-5
allele num: 66736
num of homozygotes: 0

Other
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VQSLOD
type: SiteQuality
SIO_000300: 9.03e-1

QD
type: SiteQuality
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MQRankSum
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FS
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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DP
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.96e1

ReadPosRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 7.3e-2

BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498441620714457e-5
allele num: 66736
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
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Latino
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Other
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BaseQRankSum
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VQSLOD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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FS
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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MQRankSum
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MQ
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QD
type: SiteQuality
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DP
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 12

Other
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allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 10
allele frequency: 1.4983967155144e-4
allele num: 66738
num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 8.638562543192812e-5
allele num: 11576
num of homozygotes: 0

South Asian
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allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

ReadPosRankSum
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SIO_000300: 6.66e-1

MQ
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SIO_000300: 5.977e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.31e-1

FS
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VQSLOD
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DP
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InbreedingCoeff
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QD
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BaseQRankSum
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SIO_000300: -7.006e0

MQRankSum
type: SiteQuality
SIO_000300: -7.41e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 66738
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
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allele count: 1
allele frequency: 9.609840476648087e-5
allele num: 10406
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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Other
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allele count: 0
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num of homozygotes: 0

MQRankSum
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ClippingRankSum
type: SiteQuality
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VQSLOD
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QD
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BaseQRankSum
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FS
type: SiteQuality
SIO_000300: 5.69e-1

DP
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MQ
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 6.99e-2

ReadPosRankSum
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SIO_000300: 1.03e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele count: 2
allele frequency: 2.996703626011388e-5
allele num: 66740
num of homozygotes: 0

South Asian
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Other
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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African
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allele count: 3
allele frequency: 2.882952142994427e-4
allele num: 10406
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

MQ
type: SiteQuality
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BaseQRankSum
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InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

VQSLOD
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MQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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DP
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FS
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SIO_000300: 0.0e0

QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
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allele frequency: 9.609840476648087e-5
allele num: 10406
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Latino
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 0
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FS
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 3.170237e6

ReadPosRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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VQSLOD
type: SiteQuality
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ClippingRankSum
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QD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: 7.47e-1

MQ
type: SiteQuality
SIO_000300: 5.969e1

MQRankSum
type: SiteQuality
SIO_000300: -7.65e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
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allele count: 0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 9
allele frequency: 1.34855704396296e-4
allele num: 66738
num of homozygotes: 1

South Asian
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allele frequency: 0.0e0
allele num: 16512
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VQSLOD
type: SiteQuality
SIO_000300: -1.077e0

MQRankSum
type: SiteQuality
SIO_000300: 8.86e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.23e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.15e-1

ReadPosRankSum
type: SiteQuality
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FS
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.966e1

QD
type: SiteQuality
SIO_000300: 1.745e1

DP
type: SiteQuality
SIO_000300: 3.170214e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

South Asian
type: Population
allele count: 5
allele frequency: 3.028100775193798e-4
allele num: 16512
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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Other
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

InbreedingCoeff
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SIO_000300: -3.0e-4

MQ
type: SiteQuality
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QD
type: SiteQuality
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BaseQRankSum
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FS
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MQRankSum
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VQSLOD
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ReadPosRankSum
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DP
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele num: 908
num of homozygotes: 0

East Asian
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Latino
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allele frequency: 1.554672655035412e-3
allele num: 11578
num of homozygotes: 0

African
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allele num: 10406
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South Asian
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European (Finnish)
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 1.648186994306263e-4
allele num: 66740
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BaseQRankSum
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MQRankSum
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FS
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QD
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MQ
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ClippingRankSum
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DP
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VQSLOD
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InbreedingCoeff
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 66738
num of homozygotes: 0

African
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Other
type: Population
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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South Asian
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East Asian
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FS
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ReadPosRankSum
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QD
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InbreedingCoeff
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ClippingRankSum
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MQ
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MQRankSum
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BaseQRankSum
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DP
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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European (Non-Finnish)
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African
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East Asian
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Other
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Latino
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South Asian
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InbreedingCoeff
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MQ
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ClippingRankSum
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DP
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QD
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BaseQRankSum
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MQRankSum
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VQSLOD
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FS
type: SiteQuality
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

European (Finnish)
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East Asian
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African
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Latino
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Other
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European (Non-Finnish)
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ClippingRankSum
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BaseQRankSum
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FS
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MQ
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InbreedingCoeff
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MQRankSum
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VQSLOD
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QD
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ReadPosRankSum
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DP
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
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allele frequency: 1.4983967155144e-5
allele num: 66738
num of homozygotes: 0

South Asian
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East Asian
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

InbreedingCoeff
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BaseQRankSum
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QD
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ReadPosRankSum
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ClippingRankSum
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MQ
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FS
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DP
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VQSLOD
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MQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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num of homozygotes: 0

South Asian
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European (Non-Finnish)
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Latino
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African
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allele num: 10406
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East Asian
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Other
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InbreedingCoeff
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ReadPosRankSum
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BaseQRankSum
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MQRankSum
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QD
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ClippingRankSum
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VQSLOD
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FS
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MQ
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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European (Non-Finnish)
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allele num: 66738
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African
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European (Finnish)
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Latino
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South Asian
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VQSLOD
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DP
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ReadPosRankSum
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InbreedingCoeff
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MQRankSum
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FS
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MQ
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BaseQRankSum
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QD
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ClippingRankSum
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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European (Non-Finnish)
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Other
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African
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allele num: 10406
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Latino
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European (Finnish)
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allele frequency: 0.0e0
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South Asian
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ReadPosRankSum
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DP
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VQSLOD
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InbreedingCoeff
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MQ
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MQRankSum
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BaseQRankSum
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ClippingRankSum
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FS
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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African
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South Asian
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Other
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East Asian
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Latino
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European (Finnish)
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DP
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InbreedingCoeff
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MQ
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FS
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ClippingRankSum
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BaseQRankSum
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VQSLOD
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MQRankSum
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QD
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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African
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European (Finnish)
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European (Non-Finnish)
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South Asian
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Latino
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Other
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InbreedingCoeff
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DP
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FS
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MQRankSum
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ClippingRankSum
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VQSLOD
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BaseQRankSum
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QD
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MQ
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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Latino
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African
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East Asian
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European (Finnish)
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Other
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South Asian
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InbreedingCoeff
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MQRankSum
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ClippingRankSum
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FS
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VQSLOD
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ReadPosRankSum
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DP
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MQ
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QD
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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East Asian
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European (Non-Finnish)
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European (Finnish)
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African
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Latino
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Other
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VQSLOD
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QD
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BaseQRankSum
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MQ
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DP
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MQRankSum
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ClippingRankSum
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FS
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ReadPosRankSum
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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Other
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European (Non-Finnish)
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European (Finnish)
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Latino
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South Asian
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East Asian
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FS
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InbreedingCoeff
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MQRankSum
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MQ
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ClippingRankSum
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BaseQRankSum
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QD
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DP
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ReadPosRankSum
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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South Asian
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European (Non-Finnish)
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Other
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African
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allele frequency: 3.454828122300915e-4
allele num: 11578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.3e-2

DP
type: SiteQuality
SIO_000300: 3.126732e6

MQ
type: SiteQuality
SIO_000300: 5.985e1

MQRankSum
type: SiteQuality
SIO_000300: 3.9e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.62e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.0e0

QD
type: SiteQuality
SIO_000300: 1.597e1

FS
type: SiteQuality
SIO_000300: 3.18e0

VQSLOD
type: SiteQuality
SIO_000300: 6.929999999999999e-1

GenotypeQuality
all individuals: 2
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2531
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1919
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2096
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40091
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1194
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 3.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498486528606108e-5
allele num: 66734
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQ
type: SiteQuality
SIO_000300: 5.967e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.860000000000001e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.629e0

VQSLOD
type: SiteQuality
SIO_000300: 7.91e-1

MQRankSum
type: SiteQuality
SIO_000300: 9.25e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.25e0

QD
type: SiteQuality
SIO_000300: 1.242e1

DP
type: SiteQuality
SIO_000300: 3.126204e6

GenotypeQuality
all individuals: 9
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2095
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2606
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40091
bin: 9.75e1
variant carriers: 10

GenotypeQuality
all individuals: 5
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2525
bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 8
allele frequency: 1.198789222884886e-4
allele num: 66734
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.394e1

VQSLOD
type: SiteQuality
SIO_000300: 3.82e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.52e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.2e-1

DP
type: SiteQuality
SIO_000300: 3.12618e6

MQRankSum
type: SiteQuality
SIO_000300: 6.62e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

MQ
type: SiteQuality
SIO_000300: 5.974e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.94e0