4-78697386-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78697386
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 78697386
    reference: chr 4
allele count: 1
allele frequency: 8.312690152787244e-6
allele num: 120298
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000423750
  ensembl transcript: ENST00000515506
  gene symbol: CNOT6L
  hgvsc: ENST00000515506.1:c.212+39G>A
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000425571
  ensembl transcript: ENST00000512485
  gene symbol: CNOT6L
  hgvsc: ENST00000512485.1:c.148+39G>A
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000426269
  ensembl transcript: ENST00000515441
  gene symbol: CNOT6L
  hgvsc: ENST00000515441.1:c.127+39G>A
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000424896
  ensembl transcript: ENST00000504123
  gene symbol: CNOT6L
  hgvsc: ENST00000504123.1:c.127+39G>A
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl transcript: ENST00000506166
  gene symbol: CNOT6L
  hgvsc: ENST00000506166.1:n.256+39G>A
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000264903
  ensembl transcript: ENST00000264903
  gene symbol: CNOT6L
  hgvsc: ENST00000264903.4:c.127+39G>A
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000425836
  ensembl transcript: ENST00000504804
  gene symbol: CNOT6L
  hgvsc: ENST00000504804.1:c.127+39G>A
  variant of: http://identifiers.org/hgnc/18042
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1585
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9585
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2213
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 738
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9415
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5402
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2441
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 770
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6823
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3039
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4158
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1034
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10750
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 716
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 265
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37414
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 158
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 170
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2757
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 411
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 867
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: South Asian
population: Other
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD

4-78697388-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78697388
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 78697388
    reference: chr 4
allele count: 1
allele frequency: 8.308408109006315e-6
allele num: 120360
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000426269
  ensembl transcript: ENST00000515441
  gene symbol: CNOT6L
  hgvsc: ENST00000515441.1:c.127+37T>A
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000424896
  ensembl transcript: ENST00000504123
  gene symbol: CNOT6L
  hgvsc: ENST00000504123.1:c.127+37T>A
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl transcript: ENST00000506166
  gene symbol: CNOT6L
  hgvsc: ENST00000506166.1:n.256+37T>A
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000425836
  ensembl transcript: ENST00000504804
  gene symbol: CNOT6L
  hgvsc: ENST00000504804.1:c.127+37T>A
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000423750
  ensembl transcript: ENST00000515506
  gene symbol: CNOT6L
  hgvsc: ENST00000515506.1:c.212+37T>A
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000425571
  ensembl transcript: ENST00000512485
  gene symbol: CNOT6L
  hgvsc: ENST00000512485.1:c.148+37T>A
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000264903
  ensembl transcript: ENST00000264903
  gene symbol: CNOT6L
  hgvsc: ENST00000264903.4:c.127+37T>A
  variant of: http://identifiers.org/hgnc/18042
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9433
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 587
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10749
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2212
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 716
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5443
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 691
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2441
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3211
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1585
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9588
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4158
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6823
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1034
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 347
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 303
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 165
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 242
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2769
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13325
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 245
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: South Asian
population: African
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: DP

4-78697426-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78697426
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 78697426
    reference: chr 4
allele count: 16
allele frequency: 1.325952199423211e-4
allele num: 120668
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000426269
  ensembl transcript: ENST00000515441
  gene symbol: CNOT6L
  hgvsc: ENST00000515441.1:c.126G>A
  hgvsp: ENST00000515441.1:c.126G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000138767
  ensembl transcript: ENST00000506166
  gene symbol: CNOT6L
  hgvsc: ENST00000506166.1:n.255G>A
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000425571
  ensembl transcript: ENST00000512485
  gene symbol: CNOT6L
  hgvsc: ENST00000512485.1:c.147G>A
  hgvsp: ENST00000512485.1:c.147G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000423750
  ensembl transcript: ENST00000515506
  gene symbol: CNOT6L
  hgvsc: ENST00000515506.1:c.211G>A
  hgvsp: ENST00000515506.1:c.211G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000424896
  ensembl transcript: ENST00000504123
  gene symbol: CNOT6L
  hgvsc: ENST00000504123.1:c.126G>A
  hgvsp: ENST00000504123.1:c.126G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000264903
  ensembl transcript: ENST00000264903
  gene symbol: CNOT6L
  hgvsc: ENST00000264903.4:c.126G>A
  hgvsp: ENST00000264903.4:c.126G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000425836
  ensembl transcript: ENST00000504804
  gene symbol: CNOT6L
  hgvsc: ENST00000504804.1:c.126G>A
  hgvsp: ENST00000504804.1:c.126G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18042
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5848
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1034
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2440
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6825
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2219
  bin: 9.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9809
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3707
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9613
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10809
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 714
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1585
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4161
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13524
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 874
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 868
  bin: 9.75e1
  variant carriers: 15
genotype quality: GenotypeQuality
  all individuals: 2790
  bin: 7.25e1
  variant carriers: 0
hgvs: c.126G>A
num of homozygotes: 1
population: Latino
population: Other
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: DP

4-78697433-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78697433
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 78697433
    reference: chr 4
allele count: 1
allele frequency: 8.284866862189524e-6
allele num: 120702
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000423750
  ensembl transcript: ENST00000515506
  gene symbol: CNOT6L
  hgvsc: ENST00000515506.1:c.204A>C
  hgvsp: ENSP00000423750.1:p.Glu69Ala
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138767
  ensembl transcript: ENST00000506166
  gene symbol: CNOT6L
  hgvsc: ENST00000506166.1:n.248A>C
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000425836
  ensembl transcript: ENST00000504804
  gene symbol: CNOT6L
  hgvsc: ENST00000504804.1:c.119A>C
  hgvsp: ENSP00000425836.1:p.Glu40Ala
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000425571
  ensembl transcript: ENST00000512485
  gene symbol: CNOT6L
  hgvsc: ENST00000512485.1:c.140A>C
  hgvsp: ENSP00000425571.1:p.Glu47Ala
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000264903
  ensembl transcript: ENST00000264903
  gene symbol: CNOT6L
  hgvsc: ENST00000264903.4:c.119A>C
  hgvsp: ENSP00000264903.4:p.Glu40Ala
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000424896
  ensembl transcript: ENST00000504123
  gene symbol: CNOT6L
  hgvsc: ENST00000504123.1:c.119A>C
  hgvsp: ENSP00000424896.1:p.Glu40Ala
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000426269
  ensembl transcript: ENST00000515441
  gene symbol: CNOT6L
  hgvsc: ENST00000515441.1:c.119A>C
  hgvsp: ENSP00000426269.1:p.Glu40Ala
  variant of: http://identifiers.org/hgnc/18042
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9618
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5864
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1034
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 714
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1585
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10814
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3719
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2440
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6825
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4162
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9815
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2208
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39100
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 874
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2657
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Glu40Ala
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: South Asian
population: East Asian
population: African
population: Other
reference allele: T
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: DP

4-78697438-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78697438
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 78697438
    reference: chr 4
allele count: 14
allele frequency: 1.159746843831804e-4
allele num: 120716
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000426269
  ensembl transcript: ENST00000515441
  gene symbol: CNOT6L
  hgvsc: ENST00000515441.1:c.114A>G
  hgvsp: ENST00000515441.1:c.114A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000423750
  ensembl transcript: ENST00000515506
  gene symbol: CNOT6L
  hgvsc: ENST00000515506.1:c.199A>G
  hgvsp: ENST00000515506.1:c.199A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000425571
  ensembl transcript: ENST00000512485
  gene symbol: CNOT6L
  hgvsc: ENST00000512485.1:c.135A>G
  hgvsp: ENST00000512485.1:c.135A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000425836
  ensembl transcript: ENST00000504804
  gene symbol: CNOT6L
  hgvsc: ENST00000504804.1:c.114A>G
  hgvsp: ENST00000504804.1:c.114A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138767
  ensembl transcript: ENST00000506166
  gene symbol: CNOT6L
  hgvsc: ENST00000506166.1:n.243A>G
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000264903
  ensembl transcript: ENST00000264903
  gene symbol: CNOT6L
  hgvsc: ENST00000264903.4:c.114A>G
  hgvsp: ENST00000264903.4:c.114A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000424896
  ensembl transcript: ENST00000504123
  gene symbol: CNOT6L
  hgvsc: ENST00000504123.1:c.114A>G
  hgvsp: ENST00000504123.1:c.114A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/18042
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1585
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6826
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 498
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9822
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2439
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2217
  bin: 9.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9618
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3718
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1034
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 713
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10819
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4163
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5863
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39116
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2795
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13540
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Glu38Glu
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Other
reference allele: T
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum

4-78697450-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78697450
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 78697450
    reference: chr 4
allele count: 2
allele frequency: 1.656643970644269e-5
allele num: 120726
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000425836
  ensembl transcript: ENST00000504804
  gene symbol: CNOT6L
  hgvsc: ENST00000504804.1:c.102T>C
  hgvsp: ENST00000504804.1:c.102T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138767
  ensembl transcript: ENST00000506166
  gene symbol: CNOT6L
  hgvsc: ENST00000506166.1:n.231T>C
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000424896
  ensembl transcript: ENST00000504123
  gene symbol: CNOT6L
  hgvsc: ENST00000504123.1:c.102T>C
  hgvsp: ENST00000504123.1:c.102T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000426269
  ensembl transcript: ENST00000515441
  gene symbol: CNOT6L
  hgvsc: ENST00000515441.1:c.102T>C
  hgvsp: ENST00000515441.1:c.102T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000264903
  ensembl transcript: ENST00000264903
  gene symbol: CNOT6L
  hgvsc: ENST00000264903.4:c.102T>C
  hgvsp: ENST00000264903.4:c.102T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000425571
  ensembl transcript: ENST00000512485
  gene symbol: CNOT6L
  hgvsc: ENST00000512485.1:c.123T>C
  hgvsp: ENST00000512485.1:c.123T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000423750
  ensembl transcript: ENST00000515506
  gene symbol: CNOT6L
  hgvsc: ENST00000515506.1:c.187T>C
  hgvsp: ENST00000515506.1:c.187T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/18042
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1034
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2205
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6830
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1585
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 498
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9836
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5879
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2439
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3693
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10828
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9625
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4163
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 713
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39139
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ser34Ser
num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: Other
population: East Asian
population: South Asian
reference allele: A
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD

4-78697453-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78697453
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 78697453
    reference: chr 4
allele count: 4
allele frequency: 3.313287941288538e-5
allele num: 120726
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000264903
  ensembl transcript: ENST00000264903
  gene symbol: CNOT6L
  hgvsc: ENST00000264903.4:c.99A>G
  hgvsp: ENST00000264903.4:c.99A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000425571
  ensembl transcript: ENST00000512485
  gene symbol: CNOT6L
  hgvsc: ENST00000512485.1:c.120A>G
  hgvsp: ENST00000512485.1:c.120A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000425836
  ensembl transcript: ENST00000504804
  gene symbol: CNOT6L
  hgvsc: ENST00000504804.1:c.99A>G
  hgvsp: ENST00000504804.1:c.99A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138767
  ensembl transcript: ENST00000506166
  gene symbol: CNOT6L
  hgvsc: ENST00000506166.1:n.228A>G
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000423750
  ensembl transcript: ENST00000515506
  gene symbol: CNOT6L
  hgvsc: ENST00000515506.1:c.184A>G
  hgvsp: ENST00000515506.1:c.184A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000424896
  ensembl transcript: ENST00000504123
  gene symbol: CNOT6L
  hgvsc: ENST00000504123.1:c.99A>G
  hgvsp: ENST00000504123.1:c.99A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000426269
  ensembl transcript: ENST00000515441
  gene symbol: CNOT6L
  hgvsc: ENST00000515441.1:c.99A>G
  hgvsp: ENST00000515441.1:c.99A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/18042
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9840
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 713
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5882
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10828
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9628
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1034
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3683
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2439
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1585
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6829
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2204
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4163
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 239
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Lys33Lys
num of homozygotes: 0
population: European (Finnish)
population: African
population: East Asian
population: Latino
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum

4-78697462-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78697462
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 78697462
    reference: chr 4
allele count: 1
allele frequency: 8.282945415389712e-6
allele num: 120730
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000425836
  ensembl transcript: ENST00000504804
  gene symbol: CNOT6L
  hgvsc: ENST00000504804.1:c.90T>A
  hgvsp: ENSP00000425836.1:p.Asn30Lys
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000425571
  ensembl transcript: ENST00000512485
  gene symbol: CNOT6L
  hgvsc: ENST00000512485.1:c.111T>A
  hgvsp: ENSP00000425571.1:p.Asn37Lys
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000424896
  ensembl transcript: ENST00000504123
  gene symbol: CNOT6L
  hgvsc: ENST00000504123.1:c.90T>A
  hgvsp: ENSP00000424896.1:p.Asn30Lys
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000423750
  ensembl transcript: ENST00000515506
  gene symbol: CNOT6L
  hgvsc: ENST00000515506.1:c.175T>A
  hgvsp: ENSP00000423750.1:p.Asn59Lys
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000426269
  ensembl transcript: ENST00000515441
  gene symbol: CNOT6L
  hgvsc: ENST00000515441.1:c.90T>A
  hgvsp: ENSP00000426269.1:p.Asn30Lys
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000264903
  ensembl transcript: ENST00000264903
  gene symbol: CNOT6L
  hgvsc: ENST00000264903.4:c.90T>A
  hgvsp: ENSP00000264903.4:p.Asn30Lys
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138767
  ensembl transcript: ENST00000506166
  gene symbol: CNOT6L
  hgvsc: ENST00000506166.1:n.219T>A
  variant of: http://identifiers.org/hgnc/18042
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6829
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10831
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5888
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3679
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9628
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9841
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1034
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4164
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1585
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2439
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 714
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2200
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39148
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2658
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 831
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Asn30Lys
num of homozygotes: 0
population: Other
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
population: South Asian
reference allele: A
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: DP

4-78697463-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78697463
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 78697463
    reference: chr 4
allele count: 1
allele frequency: 8.283082632032337e-6
allele num: 120728
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000425836
  ensembl transcript: ENST00000504804
  gene symbol: CNOT6L
  hgvsc: ENST00000504804.1:c.89A>T
  hgvsp: ENSP00000425836.1:p.Asn30Ile
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000423750
  ensembl transcript: ENST00000515506
  gene symbol: CNOT6L
  hgvsc: ENST00000515506.1:c.174A>T
  hgvsp: ENSP00000423750.1:p.Asn59Ile
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000426269
  ensembl transcript: ENST00000515441
  gene symbol: CNOT6L
  hgvsc: ENST00000515441.1:c.89A>T
  hgvsp: ENSP00000426269.1:p.Asn30Ile
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000264903
  ensembl transcript: ENST00000264903
  gene symbol: CNOT6L
  hgvsc: ENST00000264903.4:c.89A>T
  hgvsp: ENSP00000264903.4:p.Asn30Ile
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000424896
  ensembl transcript: ENST00000504123
  gene symbol: CNOT6L
  hgvsc: ENST00000504123.1:c.89A>T
  hgvsp: ENSP00000424896.1:p.Asn30Ile
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000425571
  ensembl transcript: ENST00000512485
  gene symbol: CNOT6L
  hgvsc: ENST00000512485.1:c.110A>T
  hgvsp: ENSP00000425571.1:p.Asn37Ile
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138767
  ensembl transcript: ENST00000506166
  gene symbol: CNOT6L
  hgvsc: ENST00000506166.1:n.218A>T
  variant of: http://identifiers.org/hgnc/18042
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 714
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9629
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1585
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4164
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9843
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3677
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10831
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1034
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2439
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2199
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5887
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6829
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13547
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 830
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 243
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Asn30Ile
num of homozygotes: 0
population: European (Finnish)
population: Other
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: African
population: Latino
reference allele: T
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD

4-78697463-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78697463
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 78697463
    reference: chr 4
allele count: 1
allele frequency: 8.283082632032337e-6
allele num: 120728
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000425571
  ensembl transcript: ENST00000512485
  gene symbol: CNOT6L
  hgvsc: ENST00000512485.1:c.110A>C
  hgvsp: ENSP00000425571.1:p.Asn37Thr
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000424896
  ensembl transcript: ENST00000504123
  gene symbol: CNOT6L
  hgvsc: ENST00000504123.1:c.89A>C
  hgvsp: ENSP00000424896.1:p.Asn30Thr
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000425836
  ensembl transcript: ENST00000504804
  gene symbol: CNOT6L
  hgvsc: ENST00000504804.1:c.89A>C
  hgvsp: ENSP00000425836.1:p.Asn30Thr
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000264903
  ensembl transcript: ENST00000264903
  gene symbol: CNOT6L
  hgvsc: ENST00000264903.4:c.89A>C
  hgvsp: ENSP00000264903.4:p.Asn30Thr
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000426269
  ensembl transcript: ENST00000515441
  gene symbol: CNOT6L
  hgvsc: ENST00000515441.1:c.89A>C
  hgvsp: ENSP00000426269.1:p.Asn30Thr
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138767
  ensembl transcript: ENST00000506166
  gene symbol: CNOT6L
  hgvsc: ENST00000506166.1:n.218A>C
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000423750
  ensembl transcript: ENST00000515506
  gene symbol: CNOT6L
  hgvsc: ENST00000515506.1:c.174A>C
  hgvsp: ENSP00000423750.1:p.Asn59Thr
  variant of: http://identifiers.org/hgnc/18042
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9629
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9843
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4164
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3677
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10831
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1034
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 714
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5887
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1585
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6829
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2439
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2199
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2658
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 876
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Asn30Thr
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: Other
reference allele: T
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum

4-78697464-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78697464
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 78697464
    reference: chr 4
allele count: 1
allele frequency: 8.283219853221344e-6
allele num: 120726
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000424896
  ensembl transcript: ENST00000504123
  gene symbol: CNOT6L
  hgvsc: ENST00000504123.1:c.88A>G
  hgvsp: ENSP00000424896.1:p.Asn30Asp
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000423750
  ensembl transcript: ENST00000515506
  gene symbol: CNOT6L
  hgvsc: ENST00000515506.1:c.173A>G
  hgvsp: ENSP00000423750.1:p.Asn59Asp
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000425571
  ensembl transcript: ENST00000512485
  gene symbol: CNOT6L
  hgvsc: ENST00000512485.1:c.109A>G
  hgvsp: ENSP00000425571.1:p.Asn37Asp
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138767
  ensembl transcript: ENST00000506166
  gene symbol: CNOT6L
  hgvsc: ENST00000506166.1:n.217A>G
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000264903
  ensembl transcript: ENST00000264903
  gene symbol: CNOT6L
  hgvsc: ENST00000264903.4:c.88A>G
  hgvsp: ENSP00000264903.4:p.Asn30Asp
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000426269
  ensembl transcript: ENST00000515441
  gene symbol: CNOT6L
  hgvsc: ENST00000515441.1:c.88A>G
  hgvsp: ENSP00000426269.1:p.Asn30Asp
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000425836
  ensembl transcript: ENST00000504804
  gene symbol: CNOT6L
  hgvsc: ENST00000504804.1:c.88A>G
  hgvsp: ENSP00000425836.1:p.Asn30Asp
  variant of: http://identifiers.org/hgnc/18042
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1585
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2440
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4164
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9843
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3677
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1034
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9629
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10830
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5887
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2197
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 496
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6831
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 714
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2795
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 239
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Asn30Asp
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
population: Other
population: European (Finnish)
population: East Asian
reference allele: T
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum

http://identifiers.org/exac.variant/4-78697470-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78697470
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 78697470
    reference: chr 4
allele count: 1
allele frequency: 8.282945415389712e-6
allele num: 120730
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000264903
  ensembl transcript: ENST00000264903
  gene symbol: CNOT6L
  hgvsc: ENST00000264903.4:c.82G>T
  hgvsp: ENSP00000264903.4:p.Val28Leu
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000423750
  ensembl transcript: ENST00000515506
  gene symbol: CNOT6L
  hgvsc: ENST00000515506.1:c.167G>T
  hgvsp: ENSP00000423750.1:p.Val57Leu
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138767
  ensembl transcript: ENST00000506166
  gene symbol: CNOT6L
  hgvsc: ENST00000506166.1:n.211G>T
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000425836
  ensembl transcript: ENST00000504804
  gene symbol: CNOT6L
  hgvsc: ENST00000504804.1:c.82G>T
  hgvsp: ENSP00000425836.1:p.Val28Leu
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000425571
  ensembl transcript: ENST00000512485
  gene symbol: CNOT6L
  hgvsc: ENST00000512485.1:c.103G>T
  hgvsp: ENSP00000425571.1:p.Val35Leu
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000426269
  ensembl transcript: ENST00000515441
  gene symbol: CNOT6L
  hgvsc: ENST00000515441.1:c.82G>T
  hgvsp: ENSP00000426269.1:p.Val28Leu
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000424896
  ensembl transcript: ENST00000504123
  gene symbol: CNOT6L
  hgvsc: ENST00000504123.1:c.82G>T
  hgvsp: ENSP00000424896.1:p.Val28Leu
  variant of: http://identifiers.org/hgnc/18042
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10829
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2443
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1585
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9840
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6832
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9638
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3678
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 713
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2197
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1035
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5882
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4163
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 496
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 875
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39141
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 819
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Val28Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
population: European (Finnish)
population: Other
population: East Asian
reference allele: C
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum

4-78697470-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78697470
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 78697470
    reference: chr 4
allele count: 2
allele frequency: 1.656589083077942e-5
allele num: 120730
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000424896
  ensembl transcript: ENST00000504123
  gene symbol: CNOT6L
  hgvsc: ENST00000504123.1:c.82G>A
  hgvsp: ENSP00000424896.1:p.Val28Ile
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000425571
  ensembl transcript: ENST00000512485
  gene symbol: CNOT6L
  hgvsc: ENST00000512485.1:c.103G>A
  hgvsp: ENSP00000425571.1:p.Val35Ile
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138767
  ensembl transcript: ENST00000506166
  gene symbol: CNOT6L
  hgvsc: ENST00000506166.1:n.211G>A
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000425836
  ensembl transcript: ENST00000504804
  gene symbol: CNOT6L
  hgvsc: ENST00000504804.1:c.82G>A
  hgvsp: ENSP00000425836.1:p.Val28Ile
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000426269
  ensembl transcript: ENST00000515441
  gene symbol: CNOT6L
  hgvsc: ENST00000515441.1:c.82G>A
  hgvsp: ENSP00000426269.1:p.Val28Ile
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000264903
  ensembl transcript: ENST00000264903
  gene symbol: CNOT6L
  hgvsc: ENST00000264903.4:c.82G>A
  hgvsp: ENSP00000264903.4:p.Val28Ile
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000423750
  ensembl transcript: ENST00000515506
  gene symbol: CNOT6L
  hgvsc: ENST00000515506.1:c.167G>A
  hgvsp: ENSP00000423750.1:p.Val57Ile
  variant of: http://identifiers.org/hgnc/18042
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 713
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5882
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10829
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1035
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9840
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4163
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6832
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9638
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3678
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2443
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1585
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 496
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2197
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 13544
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Val28Ile
num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
reference allele: C
site quality: MQ
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum

4-78697471-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78697471
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 78697471
    reference: chr 4
allele count: 6
allele frequency: 4.969520275642725e-5
allele num: 120736
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000264903
  ensembl transcript: ENST00000264903
  gene symbol: CNOT6L
  hgvsc: ENST00000264903.4:c.81G>A
  hgvsp: ENST00000264903.4:c.81G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000425836
  ensembl transcript: ENST00000504804
  gene symbol: CNOT6L
  hgvsc: ENST00000504804.1:c.81G>A
  hgvsp: ENST00000504804.1:c.81G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000424896
  ensembl transcript: ENST00000504123
  gene symbol: CNOT6L
  hgvsc: ENST00000504123.1:c.81G>A
  hgvsp: ENST00000504123.1:c.81G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000425571
  ensembl transcript: ENST00000512485
  gene symbol: CNOT6L
  hgvsc: ENST00000512485.1:c.102G>A
  hgvsp: ENST00000512485.1:c.102G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000426269
  ensembl transcript: ENST00000515441
  gene symbol: CNOT6L
  hgvsc: ENST00000515441.1:c.81G>A
  hgvsp: ENST00000515441.1:c.81G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138767
  ensembl transcript: ENST00000506166
  gene symbol: CNOT6L
  hgvsc: ENST00000506166.1:n.210G>A
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000423750
  ensembl transcript: ENST00000515506
  gene symbol: CNOT6L
  hgvsc: ENST00000515506.1:c.166G>A
  hgvsp: ENST00000515506.1:c.166G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18042
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 713
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1033
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3678
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5897
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9842
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1586
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10825
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2196
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 495
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4161
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2441
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9633
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6831
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13552
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 240
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 237
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 816
  bin: 9.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Glu27Glu
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff

4-78697494-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78697494
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 78697494
    reference: chr 4
allele count: 1
allele frequency: 8.2847295864263e-6
allele num: 120704
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000426269
  ensembl transcript: ENST00000515441
  gene symbol: CNOT6L
  hgvsc: ENST00000515441.1:c.58T>C
  hgvsp: ENSP00000426269.1:p.Tyr20His
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000425836
  ensembl transcript: ENST00000504804
  gene symbol: CNOT6L
  hgvsc: ENST00000504804.1:c.58T>C
  hgvsp: ENSP00000425836.1:p.Tyr20His
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000425571
  ensembl transcript: ENST00000512485
  gene symbol: CNOT6L
  hgvsc: ENST00000512485.1:c.79T>C
  hgvsp: ENSP00000425571.1:p.Tyr27His
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000424896
  ensembl transcript: ENST00000504123
  gene symbol: CNOT6L
  hgvsc: ENST00000504123.1:c.58T>C
  hgvsp: ENSP00000424896.1:p.Tyr20His
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000264903
  ensembl transcript: ENST00000264903
  gene symbol: CNOT6L
  hgvsc: ENST00000264903.4:c.58T>C
  hgvsp: ENSP00000264903.4:p.Tyr20His
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000423750
  ensembl transcript: ENST00000515506
  gene symbol: CNOT6L
  hgvsc: ENST00000515506.1:c.143T>C
  hgvsp: ENSP00000423750.1:p.Tyr49His
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138767
  ensembl transcript: ENST00000506166
  gene symbol: CNOT6L
  hgvsc: ENST00000506166.1:n.187T>C
  variant of: http://identifiers.org/hgnc/18042
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2440
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2193
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1586
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3635
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6828
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 713
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9633
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1032
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10824
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5888
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 495
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9841
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4161
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13549
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 873
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2657
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Tyr20His
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Other
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
reference allele: A
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum

4-78697508-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78697508
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 78697508
    reference: chr 4
allele count: 3
allele frequency: 2.486119167978785e-5
allele num: 120670
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000423750
  ensembl transcript: ENST00000515506
  gene symbol: CNOT6L
  hgvsc: ENST00000515506.1:c.129A>T
  hgvsp: ENSP00000423750.1:p.Asp44Val
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000426269
  ensembl transcript: ENST00000515441
  gene symbol: CNOT6L
  hgvsc: ENST00000515441.1:c.44A>T
  hgvsp: ENSP00000426269.1:p.Asp15Val
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000264903
  ensembl transcript: ENST00000264903
  gene symbol: CNOT6L
  hgvsc: ENST00000264903.4:c.44A>T
  hgvsp: ENSP00000264903.4:p.Asp15Val
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138767
  ensembl transcript: ENST00000506166
  gene symbol: CNOT6L
  hgvsc: ENST00000506166.1:n.173A>T
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000425836
  ensembl transcript: ENST00000504804
  gene symbol: CNOT6L
  hgvsc: ENST00000504804.1:c.44A>T
  hgvsp: ENSP00000425836.1:p.Asp15Val
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000425571
  ensembl transcript: ENST00000512485
  gene symbol: CNOT6L
  hgvsc: ENST00000512485.1:c.65A>T
  hgvsp: ENSP00000425571.1:p.Asp22Val
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000424896
  ensembl transcript: ENST00000504123
  gene symbol: CNOT6L
  hgvsc: ENST00000504123.1:c.44A>T
  hgvsp: ENSP00000424896.1:p.Asp15Val
  variant of: http://identifiers.org/hgnc/18042
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2193
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5843
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6809
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9604
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9745
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10756
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 495
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3622
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1032
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2441
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1584
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 712
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4156
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 232
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 315
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Asp15Val
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD

4-78697508-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78697508
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 78697508
    reference: chr 4
allele count: 1
allele frequency: 8.287063893262618e-6
allele num: 120670
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000425836
  ensembl transcript: ENST00000504804
  gene symbol: CNOT6L
  hgvsc: ENST00000504804.1:c.44A>G
  hgvsp: ENSP00000425836.1:p.Asp15Gly
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138767
  ensembl transcript: ENST00000506166
  gene symbol: CNOT6L
  hgvsc: ENST00000506166.1:n.173A>G
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000423750
  ensembl transcript: ENST00000515506
  gene symbol: CNOT6L
  hgvsc: ENST00000515506.1:c.129A>G
  hgvsp: ENSP00000423750.1:p.Asp44Gly
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000264903
  ensembl transcript: ENST00000264903
  gene symbol: CNOT6L
  hgvsc: ENST00000264903.4:c.44A>G
  hgvsp: ENSP00000264903.4:p.Asp15Gly
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000426269
  ensembl transcript: ENST00000515441
  gene symbol: CNOT6L
  hgvsc: ENST00000515441.1:c.44A>G
  hgvsp: ENSP00000426269.1:p.Asp15Gly
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000425571
  ensembl transcript: ENST00000512485
  gene symbol: CNOT6L
  hgvsc: ENST00000512485.1:c.65A>G
  hgvsp: ENSP00000425571.1:p.Asp22Gly
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000424896
  ensembl transcript: ENST00000504123
  gene symbol: CNOT6L
  hgvsc: ENST00000504123.1:c.44A>G
  hgvsp: ENSP00000424896.1:p.Asp15Gly
  variant of: http://identifiers.org/hgnc/18042
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1032
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2441
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9745
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9604
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 712
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4156
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2193
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5843
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3622
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10756
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1584
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 495
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6809
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13447
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39027
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 226
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 315
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Asp15Gly
num of homozygotes: 0
population: Other
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Latino
population: African
reference allele: T
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum

4-78697510-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78697510
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 78697510
    reference: chr 4
allele count: 2
allele frequency: 1.657495193263939e-5
allele num: 120664
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000424896
  ensembl transcript: ENST00000504123
  gene symbol: CNOT6L
  hgvsc: ENST00000504123.1:c.42A>G
  hgvsp: ENST00000504123.1:c.42A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000423750
  ensembl transcript: ENST00000515506
  gene symbol: CNOT6L
  hgvsc: ENST00000515506.1:c.127A>G
  hgvsp: ENST00000515506.1:c.127A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000264903
  ensembl transcript: ENST00000264903
  gene symbol: CNOT6L
  hgvsc: ENST00000264903.4:c.42A>G
  hgvsp: ENST00000264903.4:c.42A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000426269
  ensembl transcript: ENST00000515441
  gene symbol: CNOT6L
  hgvsc: ENST00000515441.1:c.42A>G
  hgvsp: ENST00000515441.1:c.42A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000425836
  ensembl transcript: ENST00000504804
  gene symbol: CNOT6L
  hgvsc: ENST00000504804.1:c.42A>G
  hgvsp: ENST00000504804.1:c.42A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000425571
  ensembl transcript: ENST00000512485
  gene symbol: CNOT6L
  hgvsc: ENST00000512485.1:c.63A>G
  hgvsp: ENST00000512485.1:c.63A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138767
  ensembl transcript: ENST00000506166
  gene symbol: CNOT6L
  hgvsc: ENST00000506166.1:n.171A>G
  variant of: http://identifiers.org/hgnc/18042
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3617
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4156
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6809
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5818
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2193
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10750
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9603
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1584
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 712
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1032
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2440
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9713
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 791
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 374
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13430
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2603
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Pro14Pro
num of homozygotes: 0
population: Latino
population: Other
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: East Asian
reference allele: T
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum

4-78697513-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78697513
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 78697513
    reference: chr 4
allele count: 1
allele frequency: 8.28775070445881e-6
allele num: 120660
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000264903
  ensembl transcript: ENST00000264903
  gene symbol: CNOT6L
  hgvsc: ENST00000264903.4:c.39T>C
  hgvsp: ENST00000264903.4:c.39T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000424896
  ensembl transcript: ENST00000504123
  gene symbol: CNOT6L
  hgvsc: ENST00000504123.1:c.39T>C
  hgvsp: ENST00000504123.1:c.39T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000426269
  ensembl transcript: ENST00000515441
  gene symbol: CNOT6L
  hgvsc: ENST00000515441.1:c.39T>C
  hgvsp: ENST00000515441.1:c.39T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000423750
  ensembl transcript: ENST00000515506
  gene symbol: CNOT6L
  hgvsc: ENST00000515506.1:c.124T>C
  hgvsp: ENST00000515506.1:c.124T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000425571
  ensembl transcript: ENST00000512485
  gene symbol: CNOT6L
  hgvsc: ENST00000512485.1:c.60T>C
  hgvsp: ENST00000512485.1:c.60T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000425836
  ensembl transcript: ENST00000504804
  gene symbol: CNOT6L
  hgvsc: ENST00000504804.1:c.39T>C
  hgvsp: ENST00000504804.1:c.39T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138767
  ensembl transcript: ENST00000506166
  gene symbol: CNOT6L
  hgvsc: ENST00000506166.1:n.168T>C
  variant of: http://identifiers.org/hgnc/18042
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 10735
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3630
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5804
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 710
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1029
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6805
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4156
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2193
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1584
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2437
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9662
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9597
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 451
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2745
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2594
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Pro13Pro
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Other
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum

4-78697516-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78697516
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 78697516
    reference: chr 4
allele count: 2
allele frequency: 1.657824933687002e-5
allele num: 120640
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000425836
  ensembl transcript: ENST00000504804
  gene symbol: CNOT6L
  hgvsc: ENST00000504804.1:c.36T>A
  hgvsp: ENSP00000425836.1:p.Asp12Glu
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138767
  ensembl transcript: ENST00000506166
  gene symbol: CNOT6L
  hgvsc: ENST00000506166.1:n.165T>A
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000424896
  ensembl transcript: ENST00000504123
  gene symbol: CNOT6L
  hgvsc: ENST00000504123.1:c.36T>A
  hgvsp: ENSP00000424896.1:p.Asp12Glu
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000425571
  ensembl transcript: ENST00000512485
  gene symbol: CNOT6L
  hgvsc: ENST00000512485.1:c.57T>A
  hgvsp: ENSP00000425571.1:p.Asp19Glu
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000423750
  ensembl transcript: ENST00000515506
  gene symbol: CNOT6L
  hgvsc: ENST00000515506.1:c.121T>A
  hgvsp: ENSP00000423750.1:p.Asp41Glu
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000264903
  ensembl transcript: ENST00000264903
  gene symbol: CNOT6L
  hgvsc: ENST00000264903.4:c.36T>A
  hgvsp: ENSP00000264903.4:p.Asp12Glu
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000426269
  ensembl transcript: ENST00000515441
  gene symbol: CNOT6L
  hgvsc: ENST00000515441.1:c.36T>A
  hgvsp: ENSP00000426269.1:p.Asp12Glu
  variant of: http://identifiers.org/hgnc/18042
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3615
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4154
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1584
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9601
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6797
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5727
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 710
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1028
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2193
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9588
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2436
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10718
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13379
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 767
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 219
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38766
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Asp12Glu
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: A
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum

http://identifiers.org/exac.variant/4-78697519-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78697519
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 78697519
    reference: chr 4
allele count: 1
allele frequency: 8.289124668435012e-6
allele num: 120640
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000264903
  ensembl transcript: ENST00000264903
  gene symbol: CNOT6L
  hgvsc: ENST00000264903.4:c.33T>G
  hgvsp: ENSP00000264903.4:p.Tyr11Ter
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000425571
  ensembl transcript: ENST00000512485
  gene symbol: CNOT6L
  hgvsc: ENST00000512485.1:c.54T>G
  hgvsp: ENSP00000425571.1:p.Tyr18Ter
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000425836
  ensembl transcript: ENST00000504804
  gene symbol: CNOT6L
  hgvsc: ENST00000504804.1:c.33T>G
  hgvsp: ENSP00000425836.1:p.Tyr11Ter
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000423750
  ensembl transcript: ENST00000515506
  gene symbol: CNOT6L
  hgvsc: ENST00000515506.1:c.118T>G
  hgvsp: ENSP00000423750.1:p.Tyr40Ter
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000426269
  ensembl transcript: ENST00000515441
  gene symbol: CNOT6L
  hgvsc: ENST00000515441.1:c.33T>G
  hgvsp: ENSP00000426269.1:p.Tyr11Ter
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000424896
  ensembl transcript: ENST00000504123
  gene symbol: CNOT6L
  hgvsc: ENST00000504123.1:c.33T>G
  hgvsp: ENSP00000424896.1:p.Tyr11Ter
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138767
  ensembl transcript: ENST00000506166
  gene symbol: CNOT6L
  hgvsc: ENST00000506166.1:n.162T>G
  variant of: http://identifiers.org/hgnc/18042
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5539
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 587
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2434
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2193
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10703
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9572
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1582
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9499
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1028
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4153
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6794
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 710
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3640
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 947
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Tyr11Ter
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: South Asian
population: Latino
population: East Asian
population: Other
reference allele: A
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP

4-78697536-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78697536
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 78697536
    reference: chr 4
allele count: 1
allele frequency: 8.36470096194061e-6
allele num: 119550
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138767
  ensembl transcript: ENST00000506166
  gene symbol: CNOT6L
  hgvsc: ENST00000506166.1:n.145A>G
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000425836
  ensembl transcript: ENST00000504804
  gene symbol: CNOT6L
  hgvsc: ENST00000504804.1:c.16A>G
  hgvsp: ENSP00000425836.1:p.Met6Val
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000423750
  ensembl transcript: ENST00000515506
  gene symbol: CNOT6L
  hgvsc: ENST00000515506.1:c.101A>G
  hgvsp: ENSP00000423750.1:p.Met35Val
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000264903
  ensembl transcript: ENST00000264903
  gene symbol: CNOT6L
  hgvsc: ENST00000264903.4:c.16A>G
  hgvsp: ENSP00000264903.4:p.Met6Val
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000424896
  ensembl transcript: ENST00000504123
  gene symbol: CNOT6L
  hgvsc: ENST00000504123.1:c.16A>G
  hgvsp: ENSP00000424896.1:p.Met6Val
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000426269
  ensembl transcript: ENST00000515441
  gene symbol: CNOT6L
  hgvsc: ENST00000515441.1:c.16A>G
  hgvsp: ENSP00000426269.1:p.Met6Val
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000425571
  ensembl transcript: ENST00000512485
  gene symbol: CNOT6L
  hgvsc: ENST00000512485.1:c.37A>G
  hgvsp: ENSP00000425571.1:p.Met13Val
  variant of: http://identifiers.org/hgnc/18042
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6385
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2193
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3911
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1024
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 612
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6900
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 703
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9204
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2528
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6986
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2392
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8396
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5789
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1578
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 377
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 165
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1556
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18491
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 678
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Met6Val
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: African
population: South Asian
population: European (Finnish)
reference allele: T
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: DP

4-78697543-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78697543
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 78697543
    reference: chr 4
allele count: 1
allele frequency: 9.328184175668365e-6
allele num: 107202
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000425571
  ensembl transcript: ENST00000512485
  gene symbol: CNOT6L
  hgvsc: ENST00000512485.1:c.30A>G
  hgvsp: ENST00000512485.1:c.30A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000426269
  ensembl transcript: ENST00000515441
  gene symbol: CNOT6L
  hgvsc: ENST00000515441.1:c.9A>G
  hgvsp: ENST00000515441.1:c.9A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000425836
  ensembl transcript: ENST00000504804
  gene symbol: CNOT6L
  hgvsc: ENST00000504804.1:c.9A>G
  hgvsp: ENST00000504804.1:c.9A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000264903
  ensembl transcript: ENST00000264903
  gene symbol: CNOT6L
  hgvsc: ENST00000264903.4:c.9A>G
  hgvsp: ENST00000264903.4:c.9A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000424896
  ensembl transcript: ENST00000504123
  gene symbol: CNOT6L
  hgvsc: ENST00000504123.1:c.9A>G
  hgvsp: ENST00000504123.1:c.9A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000423750
  ensembl transcript: ENST00000515506
  gene symbol: CNOT6L
  hgvsc: ENST00000515506.1:c.94A>G
  hgvsp: ENST00000515506.1:c.94A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138767
  ensembl transcript: ENST00000506166
  gene symbol: CNOT6L
  hgvsc: ENST00000506166.1:n.138A>G
  variant of: http://identifiers.org/hgnc/18042
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 11007
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2137
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10327
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1726
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6918
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 833
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1123
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 686
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8892
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 522
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3696
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3219
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1798
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5569
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4678
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6101
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1825
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2422
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 447
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 649
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5993
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 375
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Leu3Leu
num of homozygotes: 0
population: Other
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
reference allele: T
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum

4-78697549-G-GC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78697549
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 78697550
    reference: chr 4
allele count: 1
allele frequency: 2.280085731223494e-5
allele num: 43858
alternate allele: GC
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl transcript: ENST00000506166
  gene symbol: CNOT6L
  hgvsc: ENST00000506166.1:n.135-4_135-3insG
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000264903
  ensembl transcript: ENST00000264903
  gene symbol: CNOT6L
  hgvsc: ENST00000264903.4:c.6-4_6-3insG
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000425836
  ensembl transcript: ENST00000504804
  gene symbol: CNOT6L
  hgvsc: ENST00000504804.1:c.6-4_6-3insG
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000424896
  ensembl transcript: ENST00000504123
  gene symbol: CNOT6L
  hgvsc: ENST00000504123.1:c.6-4_6-3insG
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000423750
  ensembl transcript: ENST00000515506
  gene symbol: CNOT6L
  hgvsc: ENST00000515506.1:c.91-4_91-3insG
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000425571
  ensembl transcript: ENST00000512485
  gene symbol: CNOT6L
  hgvsc: ENST00000512485.1:c.27-4_27-3insG
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000426269
  ensembl transcript: ENST00000515441
  gene symbol: CNOT6L
  hgvsc: ENST00000515441.1:c.6-4_6-3insG
  variant of: http://identifiers.org/hgnc/18042
canonical: true
consequence: splice region
filter: VQSRTrancheINDEL95.00to96.00
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5060
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2019
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10671
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7250
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2781
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8590
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9765
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1908
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1618
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4604
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1075
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 653
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6572
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4421
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23040
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12103
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2265
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 199
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 406
  bin: 6.75e1
  variant carriers: 0
hgvs: c.6-4_6-3insG
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: South Asian
population: African
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum

4-78697551-T-TA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78697551
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 78697552
    reference: chr 4
allele count: 2
allele frequency: 7.065140596297866e-5
allele num: 28308
alternate allele: TA
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000425571
  ensembl transcript: ENST00000512485
  gene symbol: CNOT6L
  hgvsc: ENST00000512485.1:c.27-6_27-5insT
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl transcript: ENST00000506166
  gene symbol: CNOT6L
  hgvsc: ENST00000506166.1:n.135-6_135-5insT
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000423750
  ensembl transcript: ENST00000515506
  gene symbol: CNOT6L
  hgvsc: ENST00000515506.1:c.91-6_91-5insT
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000424896
  ensembl transcript: ENST00000504123
  gene symbol: CNOT6L
  hgvsc: ENST00000504123.1:c.6-6_6-5insT
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000264903
  ensembl transcript: ENST00000264903
  gene symbol: CNOT6L
  hgvsc: ENST00000264903.4:c.6-6_6-5insT
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000425836
  ensembl transcript: ENST00000504804
  gene symbol: CNOT6L
  hgvsc: ENST00000504804.1:c.6-6_6-5insT
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000426269
  ensembl transcript: ENST00000515441
  gene symbol: CNOT6L
  hgvsc: ENST00000515441.1:c.6-6_6-5insT
  variant of: http://identifiers.org/hgnc/18042
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1053
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8339
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4971
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10412
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1973
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2765
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4594
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1918
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 510
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7034
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9694
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1629
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1330
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1414
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 511
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6075
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 778
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 9025
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20257
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1839
  bin: 3.25e1
  variant carriers: 0
hgvs: c.6-6_6-5insT
num of homozygotes: 0
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
population: Latino
population: East Asian
reference allele: T
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum

4-78697552-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78697552
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 78697552
    reference: chr 4
allele count: 3
allele frequency: 3.810104396860474e-5
allele num: 78738
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000425571
  ensembl transcript: ENST00000512485
  gene symbol: CNOT6L
  hgvsc: ENST00000512485.1:c.27-6A>T
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000426269
  ensembl transcript: ENST00000515441
  gene symbol: CNOT6L
  hgvsc: ENST00000515441.1:c.6-6A>T
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000424896
  ensembl transcript: ENST00000504123
  gene symbol: CNOT6L
  hgvsc: ENST00000504123.1:c.6-6A>T
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000264903
  ensembl transcript: ENST00000264903
  gene symbol: CNOT6L
  hgvsc: ENST00000264903.4:c.6-6A>T
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000425836
  ensembl transcript: ENST00000504804
  gene symbol: CNOT6L
  hgvsc: ENST00000504804.1:c.6-6A>T
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl transcript: ENST00000506166
  gene symbol: CNOT6L
  hgvsc: ENST00000506166.1:n.135-6A>T
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000423750
  ensembl transcript: ENST00000515506
  gene symbol: CNOT6L
  hgvsc: ENST00000515506.1:c.91-6A>T
  variant of: http://identifiers.org/hgnc/18042
canonical: true
consequence: splice region
filter: InbreedingCoeff_Filter
genotype depth: GenotypeDepth
  all individuals: 2469
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4980
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13199
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8254
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13110
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9036
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1159
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1306
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3122
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 694
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4875
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2960
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4030
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4311
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1820
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9031
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1559
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2529
  bin: 4.75e1
  variant carriers: 0
hgvs: c.6-6A>T
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: Other
population: East Asian
population: African
population: South Asian
population: European (Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP

4-78697552-T-TA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78697552
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 78697553
    reference: chr 4
allele count: 56233
allele frequency: 7.141786684955168e-1
allele num: 78738
alternate allele: TA
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000425836
  ensembl transcript: ENST00000504804
  gene symbol: CNOT6L
  hgvsc: ENST00000504804.1:c.6-7dupT
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl transcript: ENST00000506166
  gene symbol: CNOT6L
  hgvsc: ENST00000506166.1:n.135-7dupT
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000264903
  ensembl transcript: ENST00000264903
  gene symbol: CNOT6L
  hgvsc: ENST00000264903.4:c.6-7dupT
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000424896
  ensembl transcript: ENST00000504123
  gene symbol: CNOT6L
  hgvsc: ENST00000504123.1:c.6-7dupT
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000426269
  ensembl transcript: ENST00000515441
  gene symbol: CNOT6L
  hgvsc: ENST00000515441.1:c.6-7dupT
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000425571
  ensembl transcript: ENST00000512485
  gene symbol: CNOT6L
  hgvsc: ENST00000512485.1:c.27-7dupT
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000423750
  ensembl transcript: ENST00000515506
  gene symbol: CNOT6L
  hgvsc: ENST00000515506.1:c.91-7dupT
  variant of: http://identifiers.org/hgnc/18042
canonical: true
consequence: splice region
filter: InbreedingCoeff_Filter
genotype depth: GenotypeDepth
  all individuals: 3122
  bin: 7.5e0
  variant carriers: 2942
genotype depth: GenotypeDepth
  all individuals: 1306
  bin: 4.25e1
  variant carriers: 1294
genotype depth: GenotypeDepth
  all individuals: 8254
  bin: 1.25e1
  variant carriers: 8126
genotype depth: GenotypeDepth
  all individuals: 13110
  bin: 2.25e1
  variant carriers: 13052
genotype depth: GenotypeDepth
  all individuals: 1159
  bin: 9.75e1
  variant carriers: 1154
genotype depth: GenotypeDepth
  all individuals: 694
  bin: 4.75e1
  variant carriers: 686
genotype depth: GenotypeDepth
  all individuals: 2469
  bin: 3.75e1
  variant carriers: 2443
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 6.25e1
  variant carriers: 345
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 2.5e0
  variant carriers: 312
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 8.75e1
  variant carriers: 160
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 5.25e1
  variant carriers: 445
genotype depth: GenotypeDepth
  all individuals: 4980
  bin: 3.25e1
  variant carriers: 4940
genotype depth: GenotypeDepth
  all individuals: 13199
  bin: 1.75e1
  variant carriers: 13127
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 6.75e1
  variant carriers: 309
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 7.75e1
  variant carriers: 245
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 7.25e1
  variant carriers: 263
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 8.25e1
  variant carriers: 198
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 5.75e1
  variant carriers: 353
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 9.25e1
  variant carriers: 166
genotype depth: GenotypeDepth
  all individuals: 9036
  bin: 2.75e1
  variant carriers: 8974
genotype quality: GenotypeQuality
  all individuals: 2529
  bin: 4.75e1
  variant carriers: 2523
genotype quality: GenotypeQuality
  all individuals: 9031
  bin: 9.75e1
  variant carriers: 9013
genotype quality: GenotypeQuality
  all individuals: 794
  bin: 8.25e1
  variant carriers: 791
genotype quality: GenotypeQuality
  all individuals: 4030
  bin: 2.75e1
  variant carriers: 4015
genotype quality: GenotypeQuality
  all individuals: 3340
  bin: 3.75e1
  variant carriers: 3329
genotype quality: GenotypeQuality
  all individuals: 4993
  bin: 7.5e0
  variant carriers: 4945
genotype quality: GenotypeQuality
  all individuals: 629
  bin: 9.25e1
  variant carriers: 627
genotype quality: GenotypeQuality
  all individuals: 2960
  bin: 4.25e1
  variant carriers: 2949
hgvs: c.6-7dupT
num of homozygotes: 17032
population: African
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Latino
population: Other
reference allele: T
site quality: DP
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum

4-78697552-T-TAA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78697552
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 78697554
    reference: chr 4
allele count: 1265
allele frequency: 1.606594020676166e-2
allele num: 78738
alternate allele: TAA
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000423750
  ensembl transcript: ENST00000515506
  gene symbol: CNOT6L
  hgvsc: ENST00000515506.1:c.91-8_91-7dupTT
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl transcript: ENST00000506166
  gene symbol: CNOT6L
  hgvsc: ENST00000506166.1:n.135-8_135-7dupTT
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000426269
  ensembl transcript: ENST00000515441
  gene symbol: CNOT6L
  hgvsc: ENST00000515441.1:c.6-8_6-7dupTT
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000424896
  ensembl transcript: ENST00000504123
  gene symbol: CNOT6L
  hgvsc: ENST00000504123.1:c.6-8_6-7dupTT
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000425571
  ensembl transcript: ENST00000512485
  gene symbol: CNOT6L
  hgvsc: ENST00000512485.1:c.27-8_27-7dupTT
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000425836
  ensembl transcript: ENST00000504804
  gene symbol: CNOT6L
  hgvsc: ENST00000504804.1:c.6-8_6-7dupTT
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000264903
  ensembl transcript: ENST00000264903
  gene symbol: CNOT6L
  hgvsc: ENST00000264903.4:c.6-8_6-7dupTT
  variant of: http://identifiers.org/hgnc/18042
canonical: true
consequence: splice region
filter: InbreedingCoeff_Filter
genotype depth: GenotypeDepth
  all individuals: 4980
  bin: 3.25e1
  variant carriers: 240
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 2.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13110
  bin: 2.25e1
  variant carriers: 662
genotype depth: GenotypeDepth
  all individuals: 8254
  bin: 1.25e1
  variant carriers: 195
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 6.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 8.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 694
  bin: 4.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 3122
  bin: 7.5e0
  variant carriers: 36
genotype depth: GenotypeDepth
  all individuals: 13199
  bin: 1.75e1
  variant carriers: 449
genotype depth: GenotypeDepth
  all individuals: 1306
  bin: 4.25e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 7.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 9036
  bin: 2.75e1
  variant carriers: 457
genotype depth: GenotypeDepth
  all individuals: 2469
  bin: 3.75e1
  variant carriers: 88
genotype depth: GenotypeDepth
  all individuals: 1159
  bin: 9.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 5.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 3676
  bin: 3.25e1
  variant carriers: 126
genotype quality: GenotypeQuality
  all individuals: 2529
  bin: 4.75e1
  variant carriers: 104
genotype quality: GenotypeQuality
  all individuals: 4993
  bin: 7.5e0
  variant carriers: 219
genotype quality: GenotypeQuality
  all individuals: 3340
  bin: 3.75e1
  variant carriers: 120
genotype quality: GenotypeQuality
  all individuals: 2129
  bin: 5.25e1
  variant carriers: 48
genotype quality: GenotypeQuality
  all individuals: 4311
  bin: 2.25e1
  variant carriers: 220
genotype quality: GenotypeQuality
  all individuals: 1292
  bin: 6.75e1
  variant carriers: 35
genotype quality: GenotypeQuality
  all individuals: 4030
  bin: 2.75e1
  variant carriers: 155
hgvs: c.6-8_6-7dupTT
num of homozygotes: 1
population: Other
population: East Asian
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum

4-78697552-TA-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78697552
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 78697551
    reference: chr 4
allele count: 146
allele frequency: 1.854250806472097e-3
allele num: 78738
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000425571
  ensembl transcript: ENST00000512485
  gene symbol: CNOT6L
  hgvsc: ENST00000512485.1:c.27-7delT
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000423750
  ensembl transcript: ENST00000515506
  gene symbol: CNOT6L
  hgvsc: ENST00000515506.1:c.91-7delT
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl transcript: ENST00000506166
  gene symbol: CNOT6L
  hgvsc: ENST00000506166.1:n.135-7delT
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000424896
  ensembl transcript: ENST00000504123
  gene symbol: CNOT6L
  hgvsc: ENST00000504123.1:c.6-7delT
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000426269
  ensembl transcript: ENST00000515441
  gene symbol: CNOT6L
  hgvsc: ENST00000515441.1:c.6-7delT
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000425836
  ensembl transcript: ENST00000504804
  gene symbol: CNOT6L
  hgvsc: ENST00000504804.1:c.6-7delT
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000264903
  ensembl transcript: ENST00000264903
  gene symbol: CNOT6L
  hgvsc: ENST00000264903.4:c.6-7delT
  variant of: http://identifiers.org/hgnc/18042
canonical: true
consequence: splice region
filter: InbreedingCoeff_Filter
genotype depth: GenotypeDepth
  all individuals: 1159
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3122
  bin: 7.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 9036
  bin: 2.75e1
  variant carriers: 49
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8254
  bin: 1.25e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 13110
  bin: 2.25e1
  variant carriers: 54
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13199
  bin: 1.75e1
  variant carriers: 36
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4980
  bin: 3.25e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 1306
  bin: 4.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 694
  bin: 4.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2469
  bin: 3.75e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 980
  bin: 7.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1093
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4875
  bin: 2.5e0
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 1820
  bin: 5.75e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 4030
  bin: 2.75e1
  variant carriers: 14
genotype quality: GenotypeQuality
  all individuals: 2529
  bin: 4.75e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 794
  bin: 8.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 3340
  bin: 3.75e1
  variant carriers: 20
hgvs: c.6-7delT
num of homozygotes: 0
population: South Asian
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
population: European (Finnish)
reference allele: TA
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum

http://identifiers.org/exac.variant/4-78697558-A-AC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78697558
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 78697559
    reference: chr 4
allele count: 2
allele frequency: 1.919312118536717e-5
allele num: 104204
alternate allele: AC
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000264903
  ensembl transcript: ENST00000264903
  gene symbol: CNOT6L
  hgvsc: ENST00000264903.4:c.6-13_6-12insG
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000425836
  ensembl transcript: ENST00000504804
  gene symbol: CNOT6L
  hgvsc: ENST00000504804.1:c.6-13_6-12insG
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl transcript: ENST00000506166
  gene symbol: CNOT6L
  hgvsc: ENST00000506166.1:n.135-13_135-12insG
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000426269
  ensembl transcript: ENST00000515441
  gene symbol: CNOT6L
  hgvsc: ENST00000515441.1:c.6-13_6-12insG
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000424896
  ensembl transcript: ENST00000504123
  gene symbol: CNOT6L
  hgvsc: ENST00000504123.1:c.6-13_6-12insG
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000425571
  ensembl transcript: ENST00000512485
  gene symbol: CNOT6L
  hgvsc: ENST00000512485.1:c.27-13_27-12insG
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000423750
  ensembl transcript: ENST00000515506
  gene symbol: CNOT6L
  hgvsc: ENST00000515506.1:c.91-13_91-12insG
  variant of: http://identifiers.org/hgnc/18042
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16964
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 742
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7675
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3639
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 987
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6122
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13454
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1337
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6889
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2489
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4314
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 422
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1217
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2781
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 17327
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23585
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 300
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 515
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 237
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: Other
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: DP

4-78697559-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78697559
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 78697559
    reference: chr 4
allele count: 1
allele frequency: 9.702520714881727e-6
allele num: 103066
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000426269
  ensembl transcript: ENST00000515441
  gene symbol: CNOT6L
  hgvsc: ENST00000515441.1:c.6-13T>A
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000423750
  ensembl transcript: ENST00000515506
  gene symbol: CNOT6L
  hgvsc: ENST00000515506.1:c.91-13T>A
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000425571
  ensembl transcript: ENST00000512485
  gene symbol: CNOT6L
  hgvsc: ENST00000512485.1:c.27-13T>A
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000425836
  ensembl transcript: ENST00000504804
  gene symbol: CNOT6L
  hgvsc: ENST00000504804.1:c.6-13T>A
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000424896
  ensembl transcript: ENST00000504123
  gene symbol: CNOT6L
  hgvsc: ENST00000504123.1:c.6-13T>A
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000264903
  ensembl transcript: ENST00000264903
  gene symbol: CNOT6L
  hgvsc: ENST00000264903.4:c.6-13T>A
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl transcript: ENST00000506166
  gene symbol: CNOT6L
  hgvsc: ENST00000506166.1:n.135-13T>A
  variant of: http://identifiers.org/hgnc/18042
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7320
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15495
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15085
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5856
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 738
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6939
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1130
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3916
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1319
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21126
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3939
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 890
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 239
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 386
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18843
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1350
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 499
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 477
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 341
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: East Asian
population: African
reference allele: A
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: ReadPosRankSum

4-78697565-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78697565
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 78697565
    reference: chr 4
allele count: 126
allele frequency: 1.327070124070524e-3
allele num: 94946
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl transcript: ENST00000506166
  gene symbol: CNOT6L
  hgvsc: ENST00000506166.1:n.135-19C>T
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000424896
  ensembl transcript: ENST00000504123
  gene symbol: CNOT6L
  hgvsc: ENST00000504123.1:c.6-19C>T
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000423750
  ensembl transcript: ENST00000515506
  gene symbol: CNOT6L
  hgvsc: ENST00000515506.1:c.91-19C>T
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000425571
  ensembl transcript: ENST00000512485
  gene symbol: CNOT6L
  hgvsc: ENST00000512485.1:c.27-19C>T
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000425836
  ensembl transcript: ENST00000504804
  gene symbol: CNOT6L
  hgvsc: ENST00000504804.1:c.6-19C>T
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000426269
  ensembl transcript: ENST00000515441
  gene symbol: CNOT6L
  hgvsc: ENST00000515441.1:c.6-19C>T
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000264903
  ensembl transcript: ENST00000264903
  gene symbol: CNOT6L
  hgvsc: ENST00000264903.4:c.6-19C>T
  variant of: http://identifiers.org/hgnc/18042
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4167
  bin: 1.75e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 4354
  bin: 3.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1687
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12258
  bin: 2.75e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 20043
  bin: 1.25e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8512
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 4.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5163
  bin: 2.25e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1018
  bin: 3.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 589
  bin: 4.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 447
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22686
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 465
  bin: 7.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1262
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2763
  bin: 9.75e1
  variant carriers: 118
genotype quality: GenotypeQuality
  all individuals: 299
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  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1433
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 230
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 489
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2982
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 3
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: MQRankSum

4-78697571-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78697571
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 78697571
    reference: chr 4
allele count: 2
allele frequency: 2.161414429602732e-5
allele num: 92532
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000426269
  ensembl transcript: ENST00000515441
  gene symbol: CNOT6L
  hgvsc: ENST00000515441.1:c.6-25T>A
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000425571
  ensembl transcript: ENST00000512485
  gene symbol: CNOT6L
  hgvsc: ENST00000512485.1:c.27-25T>A
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000264903
  ensembl transcript: ENST00000264903
  gene symbol: CNOT6L
  hgvsc: ENST00000264903.4:c.6-25T>A
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000425836
  ensembl transcript: ENST00000504804
  gene symbol: CNOT6L
  hgvsc: ENST00000504804.1:c.6-25T>A
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000423750
  ensembl transcript: ENST00000515506
  gene symbol: CNOT6L
  hgvsc: ENST00000515506.1:c.91-25T>A
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000424896
  ensembl transcript: ENST00000504123
  gene symbol: CNOT6L
  hgvsc: ENST00000504123.1:c.6-25T>A
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl transcript: ENST00000506166
  gene symbol: CNOT6L
  hgvsc: ENST00000506166.1:n.135-25T>A
  variant of: http://identifiers.org/hgnc/18042
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 632
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2472
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10167
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5017
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3193
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3610
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24674
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7522
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 265
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 310
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 224
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 716
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1575
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 389
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 746
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1997
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3576
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: East Asian
population: African
population: European (Finnish)
population: South Asian
population: Other
reference allele: A
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum

4-78697572-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78697572
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 78697572
    reference: chr 4
allele count: 1
allele frequency: 1.083470572939239e-5
allele num: 92296
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000423750
  ensembl transcript: ENST00000515506
  gene symbol: CNOT6L
  hgvsc: ENST00000515506.1:c.91-26A>T
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000426269
  ensembl transcript: ENST00000515441
  gene symbol: CNOT6L
  hgvsc: ENST00000515441.1:c.6-26A>T
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000425571
  ensembl transcript: ENST00000512485
  gene symbol: CNOT6L
  hgvsc: ENST00000512485.1:c.27-26A>T
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000425836
  ensembl transcript: ENST00000504804
  gene symbol: CNOT6L
  hgvsc: ENST00000504804.1:c.6-26A>T
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000424896
  ensembl transcript: ENST00000504123
  gene symbol: CNOT6L
  hgvsc: ENST00000504123.1:c.6-26A>T
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl transcript: ENST00000506166
  gene symbol: CNOT6L
  hgvsc: ENST00000506166.1:n.135-26A>T
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000264903
  ensembl transcript: ENST00000264903
  gene symbol: CNOT6L
  hgvsc: ENST00000264903.4:c.6-26A>T
  variant of: http://identifiers.org/hgnc/18042
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 484
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10214
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3202
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4962
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7511
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2438
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3644
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24699
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 627
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26152
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10379
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 145
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4606
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2651
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3620
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 688
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 272
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 442
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 386
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
population: Other
population: European (Finnish)
reference allele: T
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: DP

4-78697576-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78697576
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 78697576
    reference: chr 4
allele count: 2
allele frequency: 2.246433786364147e-5
allele num: 89030
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000425571
  ensembl transcript: ENST00000512485
  gene symbol: CNOT6L
  hgvsc: ENST00000512485.1:c.27-30A>T
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000425836
  ensembl transcript: ENST00000504804
  gene symbol: CNOT6L
  hgvsc: ENST00000504804.1:c.6-30A>T
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000424896
  ensembl transcript: ENST00000504123
  gene symbol: CNOT6L
  hgvsc: ENST00000504123.1:c.6-30A>T
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl transcript: ENST00000506166
  gene symbol: CNOT6L
  hgvsc: ENST00000506166.1:n.135-30A>T
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000423750
  ensembl transcript: ENST00000515506
  gene symbol: CNOT6L
  hgvsc: ENST00000515506.1:c.91-30A>T
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000426269
  ensembl transcript: ENST00000515441
  gene symbol: CNOT6L
  hgvsc: ENST00000515441.1:c.6-30A>T
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000264903
  ensembl transcript: ENST00000264903
  gene symbol: CNOT6L
  hgvsc: ENST00000264903.4:c.6-30A>T
  variant of: http://identifiers.org/hgnc/18042
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11016
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25023
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4018
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3011
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1765
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5570
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6265
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7786
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 224
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 360
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 421
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 234
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2652
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 309
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 266
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4969
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 637
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: Other
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
reference allele: T
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: ReadPosRankSum

4-78740078-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78740078
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 78740078
    reference: chr 4
allele count: 0
allele frequency: 0.0e0
allele num: 8146
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000425571
  ensembl transcript: ENST00000512485
  gene symbol: CNOT6L
  hgvsc: ENST00000512485.1:c.26+666C>G
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000426269
  ensembl transcript: ENST00000515441
  gene symbol: CNOT6L
  hgvsc: ENST00000515441.1:c.5+380C>G
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000264903
  ensembl transcript: ENST00000264903
  gene symbol: CNOT6L
  hgvsc: ENST00000264903.4:c.5+380C>G
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000423750
  ensembl transcript: ENST00000515506
  gene symbol: CNOT6L
  hgvsc: ENST00000515506.1:c.90+50C>G
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000425836
  ensembl transcript: ENST00000504804
  gene symbol: CNOT6L
  hgvsc: ENST00000504804.1:c.5+380C>G
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000424896
  ensembl transcript: ENST00000504123
  gene symbol: CNOT6L
  hgvsc: ENST00000504123.1:c.5+309C>G
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl transcript: ENST00000506166
  gene symbol: CNOT6L
  hgvsc: ENST00000506166.1:n.134+309C>G
  variant of: http://identifiers.org/hgnc/18042
canonical: true
consequence: intron
filter: AC_Adj0
genotype depth: GenotypeDepth
  all individuals: 810
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6242
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1644
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1073
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1265
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 240
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 514
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 221
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 229
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 130
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2440
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 401
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3758
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: Other
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum

4-78740078-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78740078
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 78740078
    reference: chr 4
allele count: 1
allele frequency: 1.227596366314756e-4
allele num: 8146
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl transcript: ENST00000506166
  gene symbol: CNOT6L
  hgvsc: ENST00000506166.1:n.134+309C>A
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000425836
  ensembl transcript: ENST00000504804
  gene symbol: CNOT6L
  hgvsc: ENST00000504804.1:c.5+380C>A
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000425571
  ensembl transcript: ENST00000512485
  gene symbol: CNOT6L
  hgvsc: ENST00000512485.1:c.26+666C>A
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000423750
  ensembl transcript: ENST00000515506
  gene symbol: CNOT6L
  hgvsc: ENST00000515506.1:c.90+50C>A
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000424896
  ensembl transcript: ENST00000504123
  gene symbol: CNOT6L
  hgvsc: ENST00000504123.1:c.5+309C>A
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000426269
  ensembl transcript: ENST00000515441
  gene symbol: CNOT6L
  hgvsc: ENST00000515441.1:c.5+380C>A
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000264903
  ensembl transcript: ENST00000264903
  gene symbol: CNOT6L
  hgvsc: ENST00000264903.4:c.5+380C>A
  variant of: http://identifiers.org/hgnc/18042
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1265
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6242
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 810
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1073
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1644
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 155
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 240
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2440
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 401
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 130
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 514
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 466
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3758
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: South Asian
population: Other
population: East Asian
population: European (Finnish)
reference allele: G
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP

4-78740080-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78740080
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 78740080
    reference: chr 4
allele count: 25
allele frequency: 3.0833744449926e-3
allele num: 8108
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000264903
  ensembl transcript: ENST00000264903
  gene symbol: CNOT6L
  hgvsc: ENST00000264903.4:c.5+378G>C
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000423750
  ensembl transcript: ENST00000515506
  gene symbol: CNOT6L
  hgvsc: ENST00000515506.1:c.90+48G>C
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000425836
  ensembl transcript: ENST00000504804
  gene symbol: CNOT6L
  hgvsc: ENST00000504804.1:c.5+378G>C
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000424896
  ensembl transcript: ENST00000504123
  gene symbol: CNOT6L
  hgvsc: ENST00000504123.1:c.5+307G>C
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl transcript: ENST00000506166
  gene symbol: CNOT6L
  hgvsc: ENST00000506166.1:n.134+307G>C
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000426269
  ensembl transcript: ENST00000515441
  gene symbol: CNOT6L
  hgvsc: ENST00000515441.1:c.5+378G>C
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000425571
  ensembl transcript: ENST00000512485
  gene symbol: CNOT6L
  hgvsc: ENST00000512485.1:c.26+664G>C
  variant of: http://identifiers.org/hgnc/18042
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1067
  bin: 7.5e0
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 905
  bin: 2.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1639
  bin: 1.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 1182
  bin: 1.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6154
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 496
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 465
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 387
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1037
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 722
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 230
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3830
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
population: Latino
reference allele: C
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: QD

4-78740086-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78740086
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 78740086
    reference: chr 4
allele count: 1
allele frequency: 1.218026796589525e-4
allele num: 8210
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000264903
  ensembl transcript: ENST00000264903
  gene symbol: CNOT6L
  hgvsc: ENST00000264903.4:c.5+372G>A
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000423750
  ensembl transcript: ENST00000515506
  gene symbol: CNOT6L
  hgvsc: ENST00000515506.1:c.90+42G>A
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000425836
  ensembl transcript: ENST00000504804
  gene symbol: CNOT6L
  hgvsc: ENST00000504804.1:c.5+372G>A
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000426269
  ensembl transcript: ENST00000515441
  gene symbol: CNOT6L
  hgvsc: ENST00000515441.1:c.5+372G>A
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000424896
  ensembl transcript: ENST00000504123
  gene symbol: CNOT6L
  hgvsc: ENST00000504123.1:c.5+301G>A
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl transcript: ENST00000506166
  gene symbol: CNOT6L
  hgvsc: ENST00000506166.1:n.134+301G>A
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000425571
  ensembl transcript: ENST00000512485
  gene symbol: CNOT6L
  hgvsc: ENST00000512485.1:c.26+658G>A
  variant of: http://identifiers.org/hgnc/18042
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 886
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1639
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1053
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5960
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1186
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1021
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1855
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1119
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 326
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 653
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 187
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4056
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
population: South Asian
population: Other
reference allele: C
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum

4-78740105-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78740105
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 78740105
    reference: chr 4
allele count: 71
allele frequency: 8.470532092579336e-3
allele num: 8382
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000264903
  ensembl transcript: ENST00000264903
  gene symbol: CNOT6L
  hgvsc: ENST00000264903.4:c.5+353C>T
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000423750
  ensembl transcript: ENST00000515506
  gene symbol: CNOT6L
  hgvsc: ENST00000515506.1:c.90+23C>T
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000425836
  ensembl transcript: ENST00000504804
  gene symbol: CNOT6L
  hgvsc: ENST00000504804.1:c.5+353C>T
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000425571
  ensembl transcript: ENST00000512485
  gene symbol: CNOT6L
  hgvsc: ENST00000512485.1:c.26+639C>T
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl transcript: ENST00000506166
  gene symbol: CNOT6L
  hgvsc: ENST00000506166.1:n.134+282C>T
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000424896
  ensembl transcript: ENST00000504123
  gene symbol: CNOT6L
  hgvsc: ENST00000504123.1:c.5+282C>T
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000426269
  ensembl transcript: ENST00000515441
  gene symbol: CNOT6L
  hgvsc: ENST00000515441.1:c.5+353C>T
  variant of: http://identifiers.org/hgnc/18042
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1424
  bin: 1.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1007
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5258
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 534
  bin: 1.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 2.75e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 1660
  bin: 2.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 3.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 375
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1154
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 5.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 8.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4444
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
population: Latino
reference allele: G
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD

http://identifiers.org/exac.variant/4-78740125-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78740125
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 78740125
    reference: chr 4
allele count: 0
allele frequency: 0.0e0
allele num: 8542
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000264903
  ensembl transcript: ENST00000264903
  gene symbol: CNOT6L
  hgvsc: ENST00000264903.4:c.5+333G>T
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000425571
  ensembl transcript: ENST00000512485
  gene symbol: CNOT6L
  hgvsc: ENST00000512485.1:c.26+619G>T
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000425836
  ensembl transcript: ENST00000504804
  gene symbol: CNOT6L
  hgvsc: ENST00000504804.1:c.5+333G>T
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl transcript: ENST00000506166
  gene symbol: CNOT6L
  hgvsc: ENST00000506166.1:n.134+262G>T
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000426269
  ensembl transcript: ENST00000515441
  gene symbol: CNOT6L
  hgvsc: ENST00000515441.1:c.5+333G>T
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000424896
  ensembl transcript: ENST00000504123
  gene symbol: CNOT6L
  hgvsc: ENST00000504123.1:c.5+262G>T
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000423750
  ensembl transcript: ENST00000515506
  gene symbol: CNOT6L
  hgvsc: ENST00000515506.1:c.90+3G>T
  variant of: http://identifiers.org/hgnc/18042
canonical: false
consequence: splice region
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1029
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 806
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 521
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1480
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4626
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1316
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 452
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 271
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 193
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4374
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 647
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
hgvs: c.90+3G>T
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: DP

4-78740129-TGCGA-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78740129
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 78740125
    reference: chr 4
allele count: 1
allele frequency: 1.170411985018727e-4
allele num: 8544
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000425571
  ensembl transcript: ENST00000512485
  gene symbol: CNOT6L
  hgvsc: ENST00000512485.1:c.26+611_26+614delTCGC
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000425836
  ensembl transcript: ENST00000504804
  gene symbol: CNOT6L
  hgvsc: ENST00000504804.1:c.5+325_5+328delTCGC
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000424896
  ensembl transcript: ENST00000504123
  gene symbol: CNOT6L
  hgvsc: ENST00000504123.1:c.5+254_5+257delTCGC
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000264903
  ensembl transcript: ENST00000264903
  gene symbol: CNOT6L
  hgvsc: ENST00000264903.4:c.5+325_5+328delTCGC
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000426269
  ensembl transcript: ENST00000515441
  gene symbol: CNOT6L
  hgvsc: ENST00000515441.1:c.5+325_5+328delTCGC
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000423750
  ensembl transcript: ENST00000515506
  gene symbol: CNOT6L
  hgvsc: ENST00000515506.1:c.85_88delTCGC
  hgvsp: ENSP00000423750.1:p.Arg30AspfsTer2
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl transcript: ENST00000506166
  gene symbol: CNOT6L
  hgvsc: ENST00000506166.1:n.134+254_134+257delTCGC
  variant of: http://identifiers.org/hgnc/18042
canonical: false
consequence: frameshift
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4277
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 847
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1024
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1410
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1319
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1082
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4042
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 257
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 307
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 219
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 458
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 890
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Arg30AspfsTer2
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: TGCGA
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum

4-78740132-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78740132
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 78740132
    reference: chr 4
allele count: 7406
allele frequency: 7.815533980582524e-1
allele num: 9476
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000423750
  ensembl transcript: ENST00000515506
  gene symbol: CNOT6L
  hgvsc: ENST00000515506.1:c.86C>G
  hgvsp: ENSP00000423750.1:p.Arg30Gly
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl transcript: ENST00000506166
  gene symbol: CNOT6L
  hgvsc: ENST00000506166.1:n.134+255C>G
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000264903
  ensembl transcript: ENST00000264903
  gene symbol: CNOT6L
  hgvsc: ENST00000264903.4:c.5+326C>G
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000426269
  ensembl transcript: ENST00000515441
  gene symbol: CNOT6L
  hgvsc: ENST00000515441.1:c.5+326C>G
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000425571
  ensembl transcript: ENST00000512485
  gene symbol: CNOT6L
  hgvsc: ENST00000512485.1:c.26+612C>G
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000425836
  ensembl transcript: ENST00000504804
  gene symbol: CNOT6L
  hgvsc: ENST00000504804.1:c.5+326C>G
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000424896
  ensembl transcript: ENST00000504123
  gene symbol: CNOT6L
  hgvsc: ENST00000504123.1:c.5+255C>G
  variant of: http://identifiers.org/hgnc/18042
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 3.75e1
  variant carriers: 103
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 4.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 635
  bin: 2.75e1
  variant carriers: 594
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1201
  bin: 1.25e1
  variant carriers: 1079
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1402
  bin: 1.75e1
  variant carriers: 1356
genotype depth: GenotypeDepth
  all individuals: 770
  bin: 7.5e0
  variant carriers: 645
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 3.25e1
  variant carriers: 275
genotype depth: GenotypeDepth
  all individuals: 1095
  bin: 2.25e1
  variant carriers: 1044
genotype depth: GenotypeDepth
  all individuals: 1602
  bin: 2.5e0
  variant carriers: 953
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 4.25e1
  variant carriers: 37
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 262
  bin: 1.25e1
  variant carriers: 257
genotype quality: GenotypeQuality
  all individuals: 216
  bin: 4.25e1
  variant carriers: 212
genotype quality: GenotypeQuality
  all individuals: 224
  bin: 5.75e1
  variant carriers: 219
genotype quality: GenotypeQuality
  all individuals: 373
  bin: 6.25e1
  variant carriers: 303
genotype quality: GenotypeQuality
  all individuals: 370
  bin: 3.75e1
  variant carriers: 356
genotype quality: GenotypeQuality
  all individuals: 1608
  bin: 9.75e1
  variant carriers: 1608
genotype quality: GenotypeQuality
  all individuals: 1063
  bin: 7.5e0
  variant carriers: 678
genotype quality: GenotypeQuality
  all individuals: 143
  bin: 8.25e1
  variant carriers: 142
genotype quality: GenotypeQuality
  all individuals: 263
  bin: 1.75e1
  variant carriers: 259
genotype quality: GenotypeQuality
  all individuals: 382
  bin: 2.5e0
  variant carriers: 9
hgvs: p.Arg30Gly
num of homozygotes: 2905
population: European (Non-Finnish)
population: Other
population: African
population: Latino
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: G
site quality: MQ
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum

4-78740137-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78740137
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 78740137
    reference: chr 4
allele count: 2
allele frequency: 2.452182442373713e-4
allele num: 8156
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000264903
  ensembl transcript: ENST00000264903
  gene symbol: CNOT6L
  hgvsc: ENST00000264903.4:c.5+321A>T
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl transcript: ENST00000506166
  gene symbol: CNOT6L
  hgvsc: ENST00000506166.1:n.134+250A>T
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000426269
  ensembl transcript: ENST00000515441
  gene symbol: CNOT6L
  hgvsc: ENST00000515441.1:c.5+321A>T
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000425571
  ensembl transcript: ENST00000512485
  gene symbol: CNOT6L
  hgvsc: ENST00000512485.1:c.26+607A>T
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000423750
  ensembl transcript: ENST00000515506
  gene symbol: CNOT6L
  hgvsc: ENST00000515506.1:c.81A>T
  hgvsp: ENSP00000423750.1:p.Glu28Val
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000425836
  ensembl transcript: ENST00000504804
  gene symbol: CNOT6L
  hgvsc: ENST00000504804.1:c.5+321A>T
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000424896
  ensembl transcript: ENST00000504123
  gene symbol: CNOT6L
  hgvsc: ENST00000504123.1:c.5+250A>T
  variant of: http://identifiers.org/hgnc/18042
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4397
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 759
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1189
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2174
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 230
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 312
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 545
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Glu28Val
num of homozygotes: 0
population: Other
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: South Asian
population: Latino
reference allele: T
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum

4-78740160-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78740160
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 78740160
    reference: chr 4
allele count: 437
allele frequency: 5.862624094445935e-2
allele num: 7454
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl transcript: ENST00000506166
  gene symbol: CNOT6L
  hgvsc: ENST00000506166.1:n.134+227C>T
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000264903
  ensembl transcript: ENST00000264903
  gene symbol: CNOT6L
  hgvsc: ENST00000264903.4:c.5+298C>T
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000423750
  ensembl transcript: ENST00000515506
  gene symbol: CNOT6L
  hgvsc: ENST00000515506.1:c.58C>T
  hgvsp: ENST00000515506.1:c.58C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000426269
  ensembl transcript: ENST00000515441
  gene symbol: CNOT6L
  hgvsc: ENST00000515441.1:c.5+298C>T
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000425836
  ensembl transcript: ENST00000504804
  gene symbol: CNOT6L
  hgvsc: ENST00000504804.1:c.5+298C>T
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000424896
  ensembl transcript: ENST00000504123
  gene symbol: CNOT6L
  hgvsc: ENST00000504123.1:c.5+227C>T
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000425571
  ensembl transcript: ENST00000512485
  gene symbol: CNOT6L
  hgvsc: ENST00000512485.1:c.26+584C>T
  variant of: http://identifiers.org/hgnc/18042
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2082
  bin: 1.25e1
  variant carriers: 150
genotype depth: GenotypeDepth
  all individuals: 732
  bin: 1.75e1
  variant carriers: 141
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1583
  bin: 7.5e0
  variant carriers: 102
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 3.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 609
  bin: 2.25e1
  variant carriers: 82
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 2.75e1
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5996
  bin: 2.5e0
  variant carriers: 79
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 645
  bin: 6.25e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 4.25e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 160
  bin: 1.75e1
  variant carriers: 15
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 9.25e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 519
  bin: 2.75e1
  variant carriers: 15
genotype quality: GenotypeQuality
  all individuals: 5096
  bin: 7.5e0
  variant carriers: 48
genotype quality: GenotypeQuality
  all individuals: 2453
  bin: 2.25e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 186
  bin: 1.25e1
  variant carriers: 14
genotype quality: GenotypeQuality
  all individuals: 959
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 4.75e1
  variant carriers: 14
hgvs: p.Ser20Ser
num of homozygotes: 25
population: African
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Latino
reference allele: G
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/4-78740169-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78740169
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 78740169
    reference: chr 4
allele count: 135
allele frequency: 1.892877173303421e-2
allele num: 7132
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000423750
  ensembl transcript: ENST00000515506
  gene symbol: CNOT6L
  hgvsc: ENST00000515506.1:c.49G>T
  hgvsp: ENST00000515506.1:c.49G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000426269
  ensembl transcript: ENST00000515441
  gene symbol: CNOT6L
  hgvsc: ENST00000515441.1:c.5+289G>T
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl transcript: ENST00000506166
  gene symbol: CNOT6L
  hgvsc: ENST00000506166.1:n.134+218G>T
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000264903
  ensembl transcript: ENST00000264903
  gene symbol: CNOT6L
  hgvsc: ENST00000264903.4:c.5+289G>T
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000425836
  ensembl transcript: ENST00000504804
  gene symbol: CNOT6L
  hgvsc: ENST00000504804.1:c.5+289G>T
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000425571
  ensembl transcript: ENST00000512485
  gene symbol: CNOT6L
  hgvsc: ENST00000512485.1:c.26+575G>T
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000424896
  ensembl transcript: ENST00000504123
  gene symbol: CNOT6L
  hgvsc: ENST00000504123.1:c.5+218G>T
  variant of: http://identifiers.org/hgnc/18042
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 742
  bin: 1.75e1
  variant carriers: 49
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 2.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 6845
  bin: 2.5e0
  variant carriers: 53
genotype depth: GenotypeDepth
  all individuals: 2128
  bin: 1.25e1
  variant carriers: 62
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 2.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1695
  bin: 7.5e0
  variant carriers: 41
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6050
  bin: 7.5e0
  variant carriers: 31
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 4.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 200
  bin: 1.25e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 5.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 4.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 964
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 513
  bin: 2.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 8.25e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 2765
  bin: 2.25e1
  variant carriers: 12
hgvs: p.Ala17Ala
num of homozygotes: 2
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: African
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum

4-78740180-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78740180
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 78740180
    reference: chr 4
allele count: 1
allele frequency: 1.635055591890124e-4
allele num: 6116
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000425571
  ensembl transcript: ENST00000512485
  gene symbol: CNOT6L
  hgvsc: ENST00000512485.1:c.26+564C>T
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000423750
  ensembl transcript: ENST00000515506
  gene symbol: CNOT6L
  hgvsc: ENST00000515506.1:c.38C>T
  hgvsp: ENSP00000423750.1:p.Pro14Ser
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000425836
  ensembl transcript: ENST00000504804
  gene symbol: CNOT6L
  hgvsc: ENST00000504804.1:c.5+278C>T
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl transcript: ENST00000506166
  gene symbol: CNOT6L
  hgvsc: ENST00000506166.1:n.134+207C>T
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000264903
  ensembl transcript: ENST00000264903
  gene symbol: CNOT6L
  hgvsc: ENST00000264903.4:c.5+278C>T
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000426269
  ensembl transcript: ENST00000515441
  gene symbol: CNOT6L
  hgvsc: ENST00000515441.1:c.5+278C>T
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000424896
  ensembl transcript: ENST00000504123
  gene symbol: CNOT6L
  hgvsc: ENST00000504123.1:c.5+207C>T
  variant of: http://identifiers.org/hgnc/18042
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1857
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 986
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2140
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7863
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 175
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2673
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 290
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 265
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 235
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 509
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Pro14Ser
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: G
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum

http://identifiers.org/exac.variant/4-78740188-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78740188
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 78740188
    reference: chr 4
allele count: 7
allele frequency: 1.389440254069075e-3
allele num: 5038
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000424896
  ensembl transcript: ENST00000504123
  gene symbol: CNOT6L
  hgvsc: ENST00000504123.1:c.5+199G>T
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000425836
  ensembl transcript: ENST00000504804
  gene symbol: CNOT6L
  hgvsc: ENST00000504804.1:c.5+270G>T
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000423750
  ensembl transcript: ENST00000515506
  gene symbol: CNOT6L
  hgvsc: ENST00000515506.1:c.30G>T
  hgvsp: ENSP00000423750.1:p.Gly11Val
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000264903
  ensembl transcript: ENST00000264903
  gene symbol: CNOT6L
  hgvsc: ENST00000264903.4:c.5+270G>T
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000426269
  ensembl transcript: ENST00000515441
  gene symbol: CNOT6L
  hgvsc: ENST00000515441.1:c.5+270G>T
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl transcript: ENST00000506166
  gene symbol: CNOT6L
  hgvsc: ENST00000506166.1:n.134+199G>T
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000425571
  ensembl transcript: ENST00000512485
  gene symbol: CNOT6L
  hgvsc: ENST00000512485.1:c.26+556G>T
  variant of: http://identifiers.org/hgnc/18042
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2277
  bin: 7.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 7718
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2090
  bin: 1.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1061
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2404
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 437
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 506
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 588
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 188
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Gly11Val
num of homozygotes: 0
population: European (Finnish)
population: African
population: East Asian
population: Other
population: South Asian
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD

4-78740191-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78740191
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 78740191
    reference: chr 4
allele count: 1
allele frequency: 1.795332136445242e-4
allele num: 5570
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000425571
  ensembl transcript: ENST00000512485
  gene symbol: CNOT6L
  hgvsc: ENST00000512485.1:c.26+553G>A
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000423750
  ensembl transcript: ENST00000515506
  gene symbol: CNOT6L
  hgvsc: ENST00000515506.1:c.27G>A
  hgvsp: ENSP00000423750.1:p.Arg10Gln
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000424896
  ensembl transcript: ENST00000504123
  gene symbol: CNOT6L
  hgvsc: ENST00000504123.1:c.5+196G>A
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000426269
  ensembl transcript: ENST00000515441
  gene symbol: CNOT6L
  hgvsc: ENST00000515441.1:c.5+267G>A
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000264903
  ensembl transcript: ENST00000264903
  gene symbol: CNOT6L
  hgvsc: ENST00000264903.4:c.5+267G>A
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl transcript: ENST00000506166
  gene symbol: CNOT6L
  hgvsc: ENST00000506166.1:n.134+196G>A
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000425836
  ensembl transcript: ENST00000504804
  gene symbol: CNOT6L
  hgvsc: ENST00000504804.1:c.5+267G>A
  variant of: http://identifiers.org/hgnc/18042
canonical: false
consequence: missense
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 1078
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8280
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2433
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2126
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1933
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 543
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1825
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 615
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Arg10Gln
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: DP

4-78740194-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78740194
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 78740194
    reference: chr 4
allele count: 1
allele frequency: 5.045408678102926e-4
allele num: 1982
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000264903
  ensembl transcript: ENST00000264903
  gene symbol: CNOT6L
  hgvsc: ENST00000264903.4:c.5+264C>T
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000426269
  ensembl transcript: ENST00000515441
  gene symbol: CNOT6L
  hgvsc: ENST00000515441.1:c.5+264C>T
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl transcript: ENST00000506166
  gene symbol: CNOT6L
  hgvsc: ENST00000506166.1:n.134+193C>T
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000424896
  ensembl transcript: ENST00000504123
  gene symbol: CNOT6L
  hgvsc: ENST00000504123.1:c.5+193C>T
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000423750
  ensembl transcript: ENST00000515506
  gene symbol: CNOT6L
  hgvsc: ENST00000515506.1:c.24C>T
  hgvsp: ENSP00000423750.1:p.Ala9Val
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000425836
  ensembl transcript: ENST00000504804
  gene symbol: CNOT6L
  hgvsc: ENST00000504804.1:c.5+264C>T
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000425571
  ensembl transcript: ENST00000512485
  gene symbol: CNOT6L
  hgvsc: ENST00000512485.1:c.26+550C>T
  variant of: http://identifiers.org/hgnc/18042
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6060
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2567
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1027
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2154
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 143
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 316
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 941
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4544
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ala9Val
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/4-78740200-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78740200
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 78740200
    reference: chr 4
allele count: 0
allele frequency: 0.0e0
allele num: 1034
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000424896
  ensembl transcript: ENST00000504123
  gene symbol: CNOT6L
  hgvsc: ENST00000504123.1:c.5+187G>T
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000264903
  ensembl transcript: ENST00000264903
  gene symbol: CNOT6L
  hgvsc: ENST00000264903.4:c.5+258G>T
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000425571
  ensembl transcript: ENST00000512485
  gene symbol: CNOT6L
  hgvsc: ENST00000512485.1:c.26+544G>T
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl transcript: ENST00000506166
  gene symbol: CNOT6L
  hgvsc: ENST00000506166.1:n.134+187G>T
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000425836
  ensembl transcript: ENST00000504804
  gene symbol: CNOT6L
  hgvsc: ENST00000504804.1:c.5+258G>T
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000426269
  ensembl transcript: ENST00000515441
  gene symbol: CNOT6L
  hgvsc: ENST00000515441.1:c.5+258G>T
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000423750
  ensembl transcript: ENST00000515506
  gene symbol: CNOT6L
  hgvsc: ENST00000515506.1:c.18G>T
  hgvsp: ENSP00000423750.1:p.Gly7Val
  variant of: http://identifiers.org/hgnc/18042
canonical: false
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4208
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2631
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1085
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2331
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2244
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 245
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7415
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 202
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Gly7Val
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: QD

4-78740202-C-CGA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78740202
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 78740204
    reference: chr 4
allele count: 2
allele frequency: 2.358490566037736e-3
allele num: 848
alternate allele: CGA
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000423750
  ensembl transcript: ENST00000515506
  gene symbol: CNOT6L
  hgvsc: ENST00000515506.1:c.14_15dupTC
  hgvsp: ENSP00000423750.1:p.Gly7ArgfsTer27
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl transcript: ENST00000506166
  gene symbol: CNOT6L
  hgvsc: ENST00000506166.1:n.134+183_134+184dupTC
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000426269
  ensembl transcript: ENST00000515441
  gene symbol: CNOT6L
  hgvsc: ENST00000515441.1:c.5+254_5+255dupTC
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000425571
  ensembl transcript: ENST00000512485
  gene symbol: CNOT6L
  hgvsc: ENST00000512485.1:c.26+540_26+541dupTC
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000264903
  ensembl transcript: ENST00000264903
  gene symbol: CNOT6L
  hgvsc: ENST00000264903.4:c.5+254_5+255dupTC
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000425836
  ensembl transcript: ENST00000504804
  gene symbol: CNOT6L
  hgvsc: ENST00000504804.1:c.5+254_5+255dupTC
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000424896
  ensembl transcript: ENST00000504123
  gene symbol: CNOT6L
  hgvsc: ENST00000504123.1:c.5+183_5+184dupTC
  variant of: http://identifiers.org/hgnc/18042
canonical: false
consequence: frameshift
filter: InbreedingCoeff_Filter
genotype depth: GenotypeDepth
  all individuals: 2363
  bin: 7.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2058
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2932
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 988
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5823
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1944
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 231
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 230
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.25e1
  variant carriers: 1
hgvs: p.Gly7ArgfsTer27
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
population: Other
reference allele: C
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ

4-78740203-G-GACAC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78740203
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 78740207
    reference: chr 4
allele count: 16
allele frequency: 1.789709172259508e-2
allele num: 894
alternate allele: GACAC
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000425571
  ensembl transcript: ENST00000512485
  gene symbol: CNOT6L
  hgvsc: ENST00000512485.1:c.26+537_26+540dupGTGT
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000426269
  ensembl transcript: ENST00000515441
  gene symbol: CNOT6L
  hgvsc: ENST00000515441.1:c.5+251_5+254dupGTGT
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl transcript: ENST00000506166
  gene symbol: CNOT6L
  hgvsc: ENST00000506166.1:n.134+180_134+183dupGTGT
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000425836
  ensembl transcript: ENST00000504804
  gene symbol: CNOT6L
  hgvsc: ENST00000504804.1:c.5+251_5+254dupGTGT
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000264903
  ensembl transcript: ENST00000264903
  gene symbol: CNOT6L
  hgvsc: ENST00000264903.4:c.5+251_5+254dupGTGT
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000423750
  ensembl transcript: ENST00000515506
  gene symbol: CNOT6L
  hgvsc: ENST00000515506.1:c.11_14dupGTGT
  hgvsp: ENSP00000423750.1:p.Ser6CysfsTer37
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000424896
  ensembl transcript: ENST00000504123
  gene symbol: CNOT6L
  hgvsc: ENST00000504123.1:c.5+180_5+183dupGTGT
  variant of: http://identifiers.org/hgnc/18042
canonical: false
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3105
  bin: 7.5e0
  variant carriers: 59
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1778
  bin: 1.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 595
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2976
  bin: 2.5e0
  variant carriers: 46
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5434
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 3.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 2.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 8.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 279
  bin: 2.25e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 493
  bin: 1.25e1
  variant carriers: 27
genotype quality: GenotypeQuality
  all individuals: 384
  bin: 1.75e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 4.25e1
  variant carriers: 1
hgvs: p.Ser6CysfsTer37
num of homozygotes: 0
population: European (Finnish)
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
population: Latino
reference allele: G
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum

4-78740203-G-GACACACACAC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78740203
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 78740213
    reference: chr 4
allele count: 48
allele frequency: 5.369127516778523e-2
allele num: 894
alternate allele: GACACACACAC
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000423750
  ensembl transcript: ENST00000515506
  gene symbol: CNOT6L
  hgvsc: ENST00000515506.1:c.5_14dupGTGTGTGTGT
  hgvsp: ENSP00000423750.1:p.Ser6CysfsTer39
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000264903
  ensembl transcript: ENST00000264903
  gene symbol: CNOT6L
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl transcript: ENST00000506166
  gene symbol: CNOT6L
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000425836
  ensembl transcript: ENST00000504804
  gene symbol: CNOT6L
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000424896
  ensembl transcript: ENST00000504123
  gene symbol: CNOT6L
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000426269
  ensembl transcript: ENST00000515441
  gene symbol: CNOT6L
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000425571
  ensembl transcript: ENST00000512485
  gene symbol: CNOT6L
  variant of: http://identifiers.org/hgnc/18042
canonical: false
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1778
  bin: 1.25e1
  variant carriers: 41
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 595
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2976
  bin: 2.5e0
  variant carriers: 61
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3105
  bin: 7.5e0
  variant carriers: 130
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 2.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 279
  bin: 2.25e1
  variant carriers: 16
genotype quality: GenotypeQuality
  all individuals: 384
  bin: 1.75e1
  variant carriers: 32
genotype quality: GenotypeQuality
  all individuals: 1447
  bin: 7.5e0
  variant carriers: 48
genotype quality: GenotypeQuality
  all individuals: 493
  bin: 1.25e1
  variant carriers: 53
genotype quality: GenotypeQuality
  all individuals: 5434
  bin: 2.5e0
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 3.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 4.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 7.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.75e1
  variant carriers: 1
hgvs: p.Ser6CysfsTer39
num of homozygotes: 11
population: Latino
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP

4-78740203-G-GACACACACACAC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78740203
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 78740215
    reference: chr 4
allele count: 379
allele frequency: 4.239373601789709e-1
allele num: 894
alternate allele: GACACACACACAC
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000424896
  ensembl transcript: ENST00000504123
  gene symbol: CNOT6L
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000426269
  ensembl transcript: ENST00000515441
  gene symbol: CNOT6L
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000264903
  ensembl transcript: ENST00000264903
  gene symbol: CNOT6L
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000423750
  ensembl transcript: ENST00000515506
  gene symbol: CNOT6L
  hgvsc: ENST00000515506.1:c.3_14dupGTGTGTGTGTGT
  hgvsp: ENSP00000423750.1:p.Cys2_Val5dup
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl transcript: ENST00000506166
  gene symbol: CNOT6L
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000425571
  ensembl transcript: ENST00000512485
  gene symbol: CNOT6L
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000425836
  ensembl transcript: ENST00000504804
  gene symbol: CNOT6L
  variant of: http://identifiers.org/hgnc/18042
canonical: false
consequence: inframe insertion
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 595
  bin: 1.75e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 3105
  bin: 7.5e0
  variant carriers: 564
genotype depth: GenotypeDepth
  all individuals: 1778
  bin: 1.25e1
  variant carriers: 218
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2976
  bin: 2.5e0
  variant carriers: 170
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5434
  bin: 2.5e0
  variant carriers: 45
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 3.75e1
  variant carriers: 18
genotype quality: GenotypeQuality
  all individuals: 493
  bin: 1.25e1
  variant carriers: 188
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 3.25e1
  variant carriers: 34
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 6.75e1
  variant carriers: 16
genotype quality: GenotypeQuality
  all individuals: 1447
  bin: 7.5e0
  variant carriers: 127
genotype quality: GenotypeQuality
  all individuals: 219
  bin: 9.75e1
  variant carriers: 137
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 7.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.75e1
  variant carriers: 7
hgvs: p.Cys2_Val5dup
num of homozygotes: 148
population: African
population: European (Finnish)
population: Other
population: South Asian
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum

4-78740203-G-GACACACACACACAC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78740203
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 78740217
    reference: chr 4
allele count: 92
allele frequency: 1.029082774049217e-1
allele num: 894
alternate allele: GACACACACACACAC
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000426269
  ensembl transcript: ENST00000515441
  gene symbol: CNOT6L
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000424896
  ensembl transcript: ENST00000504123
  gene symbol: CNOT6L
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000425836
  ensembl transcript: ENST00000504804
  gene symbol: CNOT6L
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000425571
  ensembl transcript: ENST00000512485
  gene symbol: CNOT6L
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl transcript: ENST00000506166
  gene symbol: CNOT6L
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000423750
  ensembl transcript: ENST00000515506
  gene symbol: CNOT6L
  hgvsp: ENSP00000423750.1:p.Ser6CysfsTer32
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000264903
  ensembl transcript: ENST00000264903
  gene symbol: CNOT6L
  variant of: http://identifiers.org/hgnc/18042
canonical: false
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1778
  bin: 1.25e1
  variant carriers: 60
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 595
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2976
  bin: 2.5e0
  variant carriers: 52
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3105
  bin: 7.5e0
  variant carriers: 157
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 279
  bin: 2.25e1
  variant carriers: 27
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 8.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 3.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 1447
  bin: 7.5e0
  variant carriers: 43
genotype quality: GenotypeQuality
  all individuals: 5434
  bin: 2.5e0
  variant carriers: 15
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 6.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 4.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 384
  bin: 1.75e1
  variant carriers: 38
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 3.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 493
  bin: 1.25e1
  variant carriers: 57
hgvs: p.Ser6CysfsTer32
num of homozygotes: 33
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: QD
site quality: ReadPosRankSum

4-78740203-G-GACACACACACACACACAC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78740203
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 78740221
    reference: chr 4
allele count: 9
allele frequency: 1.006711409395973e-2
allele num: 894
alternate allele: GACACACACACACACACAC
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000426269
  ensembl transcript: ENST00000515441
  gene symbol: CNOT6L
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000423750
  ensembl transcript: ENST00000515506
  gene symbol: CNOT6L
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000424896
  ensembl transcript: ENST00000504123
  gene symbol: CNOT6L
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000425571
  ensembl transcript: ENST00000512485
  gene symbol: CNOT6L
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl transcript: ENST00000506166
  gene symbol: CNOT6L
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000264903
  ensembl transcript: ENST00000264903
  gene symbol: CNOT6L
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000425836
  ensembl transcript: ENST00000504804
  gene symbol: CNOT6L
  variant of: http://identifiers.org/hgnc/18042
canonical: false
consequence: inframe insertion
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3105
  bin: 7.5e0
  variant carriers: 40
genotype depth: GenotypeDepth
  all individuals: 595
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1778
  bin: 1.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2976
  bin: 2.5e0
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5434
  bin: 2.5e0
  variant carriers: 15
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 384
  bin: 1.75e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 493
  bin: 1.25e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 8.25e1
  variant carriers: 1
hgvs: p.Val5_Ser6insCysValCysValCysVal
num of homozygotes: 2
population: Latino
population: South Asian
population: Other
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum

4-78740203-G-GACACACACACACACACACAC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78740203
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 78740223
    reference: chr 4
allele count: 22
allele frequency: 2.460850111856823e-2
allele num: 894
alternate allele: GACACACACACACACACACAC
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000424896
  ensembl transcript: ENST00000504123
  gene symbol: CNOT6L
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000423750
  ensembl transcript: ENST00000515506
  gene symbol: CNOT6L
  hgvsp: ENSP00000423750.1:p.Ser6CysfsTer34
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl transcript: ENST00000506166
  gene symbol: CNOT6L
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000425836
  ensembl transcript: ENST00000504804
  gene symbol: CNOT6L
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000426269
  ensembl transcript: ENST00000515441
  gene symbol: CNOT6L
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000425571
  ensembl transcript: ENST00000512485
  gene symbol: CNOT6L
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000264903
  ensembl transcript: ENST00000264903
  gene symbol: CNOT6L
  variant of: http://identifiers.org/hgnc/18042
canonical: false
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2976
  bin: 2.5e0
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3105
  bin: 7.5e0
  variant carriers: 39
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 595
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1778
  bin: 1.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1447
  bin: 7.5e0
  variant carriers: 18
genotype quality: GenotypeQuality
  all individuals: 5434
  bin: 2.5e0
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 493
  bin: 1.25e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 279
  bin: 2.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Ser6CysfsTer34
num of homozygotes: 7
population: East Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: African
population: European (Finnish)
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum

4-78740204-A-ACACACACACACG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78740204
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 78740216
    reference: chr 4
allele count: 0
allele frequency: 0.0e0
allele num: 438
alternate allele: ACACACACACACG
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000264903
  ensembl transcript: ENST00000264903
  gene symbol: CNOT6L
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000426269
  ensembl transcript: ENST00000515441
  gene symbol: CNOT6L
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000423750
  ensembl transcript: ENST00000515506
  gene symbol: CNOT6L
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000425571
  ensembl transcript: ENST00000512485
  gene symbol: CNOT6L
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000425836
  ensembl transcript: ENST00000504804
  gene symbol: CNOT6L
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl transcript: ENST00000506166
  gene symbol: CNOT6L
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000424896
  ensembl transcript: ENST00000504123
  gene symbol: CNOT6L
  variant of: http://identifiers.org/hgnc/18042
canonical: false
consequence: inframe insertion
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 2779
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1930
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5534
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 920
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5184
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5100
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 558
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 443
  bin: 1.75e1
  variant carriers: 1
hgvs: p.Val5_Ser6insArgValCysVal
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
population: Other
reference allele: A
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: InbreedingCoeff

4-78740205-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78740205
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 78740205
    reference: chr 4
allele count: 2
allele frequency: 1.098901098901099e-3
allele num: 1820
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000424896
  ensembl transcript: ENST00000504123
  gene symbol: CNOT6L
  hgvsc: ENST00000504123.1:c.5+182G>C
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000423750
  ensembl transcript: ENST00000515506
  gene symbol: CNOT6L
  hgvsc: ENST00000515506.1:c.13G>C
  hgvsp: ENST00000515506.1:c.13G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl transcript: ENST00000506166
  gene symbol: CNOT6L
  hgvsc: ENST00000506166.1:n.134+182G>C
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000264903
  ensembl transcript: ENST00000264903
  gene symbol: CNOT6L
  hgvsc: ENST00000264903.4:c.5+253G>C
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000426269
  ensembl transcript: ENST00000515441
  gene symbol: CNOT6L
  hgvsc: ENST00000515441.1:c.5+253G>C
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000425571
  ensembl transcript: ENST00000512485
  gene symbol: CNOT6L
  hgvsc: ENST00000512485.1:c.26+539G>C
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000425836
  ensembl transcript: ENST00000504804
  gene symbol: CNOT6L
  hgvsc: ENST00000504804.1:c.5+253G>C
  variant of: http://identifiers.org/hgnc/18042
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3673
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7965
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2088
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 923
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2606
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1232
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
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  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 8854
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Val5Val
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
population: Latino
population: South Asian
population: European (Finnish)
reference allele: C
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum

4-78740206-A-ACACACACACG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78740206
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 78740216
    reference: chr 4
allele count: 0
allele frequency: 0.0e0
allele num: 2060
alternate allele: ACACACACACG
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000426269
  ensembl transcript: ENST00000515441
  gene symbol: CNOT6L
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000424896
  ensembl transcript: ENST00000504123
  gene symbol: CNOT6L
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000425836
  ensembl transcript: ENST00000504804
  gene symbol: CNOT6L
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000264903
  ensembl transcript: ENST00000264903
  gene symbol: CNOT6L
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl transcript: ENST00000506166
  gene symbol: CNOT6L
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000423750
  ensembl transcript: ENST00000515506
  gene symbol: CNOT6L
  hgvsc: ENST00000515506.1:c.11_12insCGTGTGTGTG
  hgvsp: ENSP00000423750.1:p.Val5AlafsTer40
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000425571
  ensembl transcript: ENST00000512485
  gene symbol: CNOT6L
  variant of: http://identifiers.org/hgnc/18042
canonical: false
consequence: frameshift
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 927
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8415
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3738
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2129
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1122
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2517
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 814
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Val5AlafsTer40
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Other
population: African
population: Latino
population: East Asian
reference allele: A
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD

http://identifiers.org/exac.variant/4-78740221-C-CACACACACACAA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78740221
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 78740233
    reference: chr 4
allele count: 0
allele frequency: 0.0e0
allele num: 6342
alternate allele: CACACACACACAA
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000426269
  ensembl transcript: ENST00000515441
  gene symbol: CNOT6L
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000424896
  ensembl transcript: ENST00000504123
  gene symbol: CNOT6L
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000425571
  ensembl transcript: ENST00000512485
  gene symbol: CNOT6L
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000264903
  ensembl transcript: ENST00000264903
  gene symbol: CNOT6L
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl transcript: ENST00000506166
  gene symbol: CNOT6L
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000425836
  ensembl transcript: ENST00000504804
  gene symbol: CNOT6L
  variant of: http://identifiers.org/hgnc/18042
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3985
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2654
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16604
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 962
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 204
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 810
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3366
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1182
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17872
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: African
population: South Asian
population: European (Finnish)
population: East Asian
population: Latino
reference allele: C
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP

4-78740224-A-ACACACACACACACACACACG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78740224
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 78740244
    reference: chr 4
allele count: 1
allele frequency: 1.431024613623354e-4
allele num: 6988
alternate allele: ACACACACACACACACACACG
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000425571
  ensembl transcript: ENST00000512485
  gene symbol: CNOT6L
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000425836
  ensembl transcript: ENST00000504804
  gene symbol: CNOT6L
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000426269
  ensembl transcript: ENST00000515441
  gene symbol: CNOT6L
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000424896
  ensembl transcript: ENST00000504123
  gene symbol: CNOT6L
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl transcript: ENST00000506166
  gene symbol: CNOT6L
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000264903
  ensembl transcript: ENST00000264903
  gene symbol: CNOT6L
  variant of: http://identifiers.org/hgnc/18042
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2821
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18414
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4002
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 982
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 470
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19259
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3890
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1361
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 343
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 711
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: Other
population: European (Finnish)
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: A
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD

http://identifiers.org/exac.variant/4-78740226-A-ACACACACACACACACACACACC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78740226
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 78740248
    reference: chr 4
allele count: 0
allele frequency: 0.0e0
allele num: 7206
alternate allele: ACACACACACACACACACACACC
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000264903
  ensembl transcript: ENST00000264903
  gene symbol: CNOT6L
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000426269
  ensembl transcript: ENST00000515441
  gene symbol: CNOT6L
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000424896
  ensembl transcript: ENST00000504123
  gene symbol: CNOT6L
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl transcript: ENST00000506166
  gene symbol: CNOT6L
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000425571
  ensembl transcript: ENST00000512485
  gene symbol: CNOT6L
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000425836
  ensembl transcript: ENST00000504804
  gene symbol: CNOT6L
  variant of: http://identifiers.org/hgnc/18042
canonical: true
consequence: intron
filter: VQSRTrancheINDEL95.00to96.00
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2925
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4025
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19517
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 998
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20102
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.25e1
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genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4135
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 468
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1505
  bin: 2.5e0
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genotype quality: GenotypeQuality
  all individuals: 348
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 266
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
population: Other
reference allele: A
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: DP

http://identifiers.org/exac.variant/4-78740226-A-ACACC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78740226
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 78740230
    reference: chr 4
allele count: 3
allele frequency: 4.163197335553705e-4
allele num: 7206
alternate allele: ACACC
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000424896
  ensembl transcript: ENST00000504123
  gene symbol: CNOT6L
  hgvsc: ENST00000504123.1:c.5+157_5+160dupGGTG
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000425571
  ensembl transcript: ENST00000512485
  gene symbol: CNOT6L
  hgvsc: ENST00000512485.1:c.26+514_26+517dupGGTG
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl transcript: ENST00000506166
  gene symbol: CNOT6L
  hgvsc: ENST00000506166.1:n.134+157_134+160dupGGTG
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000264903
  ensembl transcript: ENST00000264903
  gene symbol: CNOT6L
  hgvsc: ENST00000264903.4:c.5+228_5+231dupGGTG
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000425836
  ensembl transcript: ENST00000504804
  gene symbol: CNOT6L
  hgvsc: ENST00000504804.1:c.5+228_5+231dupGGTG
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000426269
  ensembl transcript: ENST00000515441
  gene symbol: CNOT6L
  hgvsc: ENST00000515441.1:c.5+228_5+231dupGGTG
  variant of: http://identifiers.org/hgnc/18042
canonical: true
consequence: intron
filter: VQSRTrancheINDEL95.00to96.00
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 998
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19517
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2925
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4025
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 679
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1505
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 468
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20102
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4135
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Other
population: African
population: Latino
population: European (Finnish)
population: East Asian
reference allele: A
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: VQSLOD

http://identifiers.org/exac.variant/4-78740228-A-ACACACACACACC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78740228
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 78740240
    reference: chr 4
allele count: 3
allele frequency: 4.109589041095891e-4
allele num: 7300
alternate allele: ACACACACACACC
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000264903
  ensembl transcript: ENST00000264903
  gene symbol: CNOT6L
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000425571
  ensembl transcript: ENST00000512485
  gene symbol: CNOT6L
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000426269
  ensembl transcript: ENST00000515441
  gene symbol: CNOT6L
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000425836
  ensembl transcript: ENST00000504804
  gene symbol: CNOT6L
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000424896
  ensembl transcript: ENST00000504123
  gene symbol: CNOT6L
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl transcript: ENST00000506166
  gene symbol: CNOT6L
  variant of: http://identifiers.org/hgnc/18042
canonical: true
consequence: intron
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20692
  bin: 2.5e0
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3022
  bin: 1.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1024
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4115
  bin: 7.5e0
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 428
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 292
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 20854
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1951
  bin: 2.5e0
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4298
  bin: 2.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 359
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 660
  bin: 1.25e1
  variant carriers: 1
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
reference allele: A
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/4-78740228-A-ACC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78740228
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 78740230
    reference: chr 4
allele count: 13
allele frequency: 1.780821917808219e-3
allele num: 7300
alternate allele: ACC
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000426269
  ensembl transcript: ENST00000515441
  gene symbol: CNOT6L
  hgvsc: ENST00000515441.1:c.5+228_5+229dupGG
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000424896
  ensembl transcript: ENST00000504123
  gene symbol: CNOT6L
  hgvsc: ENST00000504123.1:c.5+157_5+158dupGG
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000425571
  ensembl transcript: ENST00000512485
  gene symbol: CNOT6L
  hgvsc: ENST00000512485.1:c.26+514_26+515dupGG
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000425836
  ensembl transcript: ENST00000504804
  gene symbol: CNOT6L
  hgvsc: ENST00000504804.1:c.5+228_5+229dupGG
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000264903
  ensembl transcript: ENST00000264903
  gene symbol: CNOT6L
  hgvsc: ENST00000264903.4:c.5+228_5+229dupGG
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl transcript: ENST00000506166
  gene symbol: CNOT6L
  hgvsc: ENST00000506166.1:n.134+157_134+158dupGG
  variant of: http://identifiers.org/hgnc/18042
canonical: true
consequence: intron
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4115
  bin: 7.5e0
  variant carriers: 43
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3022
  bin: 1.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20692
  bin: 2.5e0
  variant carriers: 46
genotype depth: GenotypeDepth
  all individuals: 1024
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 6.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 7.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 5.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 292
  bin: 3.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 359
  bin: 2.75e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 20854
  bin: 7.5e0
  variant carriers: 14
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 5.75e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4298
  bin: 2.25e1
  variant carriers: 11
num of homozygotes: 0
population: East Asian
population: South Asian
population: Latino
population: African
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: A
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD

http://identifiers.org/exac.variant/4-78740228-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78740228
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 78740228
    reference: chr 4
allele count: 4
allele frequency: 5.47945205479452e-4
allele num: 7300
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000425836
  ensembl transcript: ENST00000504804
  gene symbol: CNOT6L
  hgvsc: ENST00000504804.1:c.5+230T>G
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000426269
  ensembl transcript: ENST00000515441
  gene symbol: CNOT6L
  hgvsc: ENST00000515441.1:c.5+230T>G
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000424896
  ensembl transcript: ENST00000504123
  gene symbol: CNOT6L
  hgvsc: ENST00000504123.1:c.5+159T>G
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000425571
  ensembl transcript: ENST00000512485
  gene symbol: CNOT6L
  hgvsc: ENST00000512485.1:c.26+516T>G
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000264903
  ensembl transcript: ENST00000264903
  gene symbol: CNOT6L
  hgvsc: ENST00000264903.4:c.5+230T>G
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl transcript: ENST00000506166
  gene symbol: CNOT6L
  hgvsc: ENST00000506166.1:n.134+159T>G
  variant of: http://identifiers.org/hgnc/18042
canonical: true
consequence: intron
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20692
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1024
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3022
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 4115
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
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genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 428
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 4.25e1
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genotype quality: GenotypeQuality
  all individuals: 9
  bin: 5.25e1
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genotype quality: GenotypeQuality
  all individuals: 1
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genotype quality: GenotypeQuality
  all individuals: 8
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  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4298
  bin: 2.25e1
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genotype quality: GenotypeQuality
  all individuals: 359
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genotype quality: GenotypeQuality
  all individuals: 1951
  bin: 2.5e0
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genotype quality: GenotypeQuality
  all individuals: 292
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 3.75e1
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genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Latino
population: Other
population: European (Finnish)
population: African
population: East Asian
reference allele: A
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ

http://identifiers.org/exac.variant/4-78740229-C-CACACACA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78740229
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 78740236
    reference: chr 4
allele count: 91
allele frequency: 1.150442477876106e-2
allele num: 7910
alternate allele: CACACACA
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000425571
  ensembl transcript: ENST00000512485
  gene symbol: CNOT6L
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000426269
  ensembl transcript: ENST00000515441
  gene symbol: CNOT6L
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl transcript: ENST00000506166
  gene symbol: CNOT6L
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000425836
  ensembl transcript: ENST00000504804
  gene symbol: CNOT6L
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000264903
  ensembl transcript: ENST00000264903
  gene symbol: CNOT6L
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000424896
  ensembl transcript: ENST00000504123
  gene symbol: CNOT6L
  variant of: http://identifiers.org/hgnc/18042
canonical: true
consequence: intron
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 1169
  bin: 1.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 4056
  bin: 7.5e0
  variant carriers: 148
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2901
  bin: 1.25e1
  variant carriers: 84
genotype depth: GenotypeDepth
  all individuals: 1
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
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  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21444
  bin: 2.5e0
  variant carriers: 130
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 6.75e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 1023
  bin: 9.75e1
  variant carriers: 93
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 8.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 187
  bin: 3.75e1
  variant carriers: 17
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 8.25e1
  variant carriers: 14
genotype quality: GenotypeQuality
  all individuals: 482
  bin: 2.75e1
  variant carriers: 47
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 4.25e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 4.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 150
  bin: 6.25e1
  variant carriers: 19
genotype quality: GenotypeQuality
  all individuals: 21016
  bin: 7.5e0
  variant carriers: 19
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 7.25e1
  variant carriers: 18
genotype quality: GenotypeQuality
  all individuals: 1526
  bin: 2.5e0
  variant carriers: 25
genotype quality: GenotypeQuality
  all individuals: 380
  bin: 3.25e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 9.25e1
  variant carriers: 6
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: African
population: Other
population: Latino
population: European (Finnish)
reference allele: C
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/4-78740229-C-CACACACACA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78740229
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 78740238
    reference: chr 4
allele count: 295
allele frequency: 3.729456384323641e-2
allele num: 7910
alternate allele: CACACACACA
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000424896
  ensembl transcript: ENST00000504123
  gene symbol: CNOT6L
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl transcript: ENST00000506166
  gene symbol: CNOT6L
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000264903
  ensembl transcript: ENST00000264903
  gene symbol: CNOT6L
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000425836
  ensembl transcript: ENST00000504804
  gene symbol: CNOT6L
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000425571
  ensembl transcript: ENST00000512485
  gene symbol: CNOT6L
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000426269
  ensembl transcript: ENST00000515441
  gene symbol: CNOT6L
  variant of: http://identifiers.org/hgnc/18042
canonical: true
consequence: intron
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 2.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2901
  bin: 1.25e1
  variant carriers: 212
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4056
  bin: 7.5e0
  variant carriers: 283
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1169
  bin: 1.75e1
  variant carriers: 72
genotype depth: GenotypeDepth
  all individuals: 21444
  bin: 2.5e0
  variant carriers: 128
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 2.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 668
  bin: 1.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 466
  bin: 1.75e1
  variant carriers: 14
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 7.25e1
  variant carriers: 28
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 9.25e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 380
  bin: 3.25e1
  variant carriers: 17
genotype quality: GenotypeQuality
  all individuals: 21016
  bin: 7.5e0
  variant carriers: 22
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 5.25e1
  variant carriers: 40
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 5.75e1
  variant carriers: 31
genotype quality: GenotypeQuality
  all individuals: 150
  bin: 6.25e1
  variant carriers: 21
genotype quality: GenotypeQuality
  all individuals: 1526
  bin: 2.5e0
  variant carriers: 21
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 8.25e1
  variant carriers: 27
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 7.75e1
  variant carriers: 16
genotype quality: GenotypeQuality
  all individuals: 482
  bin: 2.75e1
  variant carriers: 38
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 8.75e1
  variant carriers: 25
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP

http://identifiers.org/exac.variant/4-78740229-C-CACACACACACACA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78740229
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 78740242
    reference: chr 4
allele count: 115
allele frequency: 1.45385587863464e-2
allele num: 7910
alternate allele: CACACACACACACA
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000264903
  ensembl transcript: ENST00000264903
  gene symbol: CNOT6L
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl transcript: ENST00000506166
  gene symbol: CNOT6L
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000425571
  ensembl transcript: ENST00000512485
  gene symbol: CNOT6L
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000424896
  ensembl transcript: ENST00000504123
  gene symbol: CNOT6L
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000425836
  ensembl transcript: ENST00000504804
  gene symbol: CNOT6L
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000426269
  ensembl transcript: ENST00000515441
  gene symbol: CNOT6L
  variant of: http://identifiers.org/hgnc/18042
canonical: true
consequence: intron
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 21444
  bin: 2.5e0
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1169
  bin: 1.75e1
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 2.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4056
  bin: 7.5e0
  variant carriers: 57
genotype depth: GenotypeDepth
  all individuals: 2901
  bin: 1.25e1
  variant carriers: 72
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 2.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 668
  bin: 1.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 3368
  bin: 2.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 5.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 8.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 7.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 466
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21016
  bin: 7.5e0
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 5.25e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 187
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 482
  bin: 2.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 7.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1526
  bin: 2.5e0
  variant carriers: 4
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: Latino
population: African
population: South Asian
reference allele: C
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/4-78740229-C-CACACACACACA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78740229
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 78740240
    reference: chr 4
allele count: 366
allele frequency: 4.627054361567636e-2
allele num: 7910
alternate allele: CACACACACACA
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000425836
  ensembl transcript: ENST00000504804
  gene symbol: CNOT6L
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000424896
  ensembl transcript: ENST00000504123
  gene symbol: CNOT6L
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl transcript: ENST00000506166
  gene symbol: CNOT6L
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000425571
  ensembl transcript: ENST00000512485
  gene symbol: CNOT6L
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000426269
  ensembl transcript: ENST00000515441
  gene symbol: CNOT6L
  variant of: http://identifiers.org/hgnc/18042
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000138767
  ensembl protein: ENSP00000264903
  ensembl transcript: ENST00000264903
  gene symbol: CNOT6L
  variant of: http://identifiers.org/hgnc/18042
canonical: true
consequence: intron
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 2.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 2901
  bin: 1.25e1
  variant carriers: 251
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4056
  bin: 7.5e0
  variant carriers: 230
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 2.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1169
  bin: 1.75e1
  variant carriers: 98
genotype depth: GenotypeDepth
  all individuals: 21444
  bin: 2.5e0
  variant carriers: 55
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 8.75e1
  variant carriers: 17
genotype quality: GenotypeQuality
  all individuals: 150
  bin: 6.25e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 6.75e1
  variant carriers: 17
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 7.25e1
  variant carriers: 14
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 7.75e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 3368
  bin: 2.25e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 466
  bin: 1.75e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 1023
  bin: 9.75e1
  variant carriers: 405
genotype quality: GenotypeQuality
  all individuals: 1526
  bin: 2.5e0
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 668
  bin: 1.25e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 187
  bin: 3.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 21016
  bin: 7.5e0
  variant carriers: 8
num of homozygotes: 0
reference allele: C

GenotypeQuality
all individuals: 101
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 331
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13286
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 241
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2632
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 238
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 340
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 878
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 220
bin: 4.25e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.138735420503377e-5
allele num: 16290
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9782
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66540
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.164e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.59e-1

DP
type: SiteQuality
SIO_000300: 2.662962e6

QD
type: SiteQuality
SIO_000300: 1.307e1

MQ
type: SiteQuality
SIO_000300: 5.447e1

FS
type: SiteQuality
SIO_000300: 1.648e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.6e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 7.2e-1

MQRankSum
type: SiteQuality
SIO_000300: 9.51e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.289e0

GenotypeQuality
all individuals: 37728
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2650
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 253
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 882
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 154
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 240
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 865
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 72
bin: 5.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16338
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.022285831118381e-4
allele num: 9782
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66550
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.095e0

MQ
type: SiteQuality
SIO_000300: 5.408e1

QD
type: SiteQuality
SIO_000300: 1.034e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.66e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.63e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 5.65e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.26e-1

DP
type: SiteQuality
SIO_000300: 2.664627e6

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 239
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 243
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39051
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2653
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9792
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66672
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
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South Asian
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allele frequency: 9.700497150478962e-4
allele num: 16494
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

InbreedingCoeff
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ReadPosRankSum
type: SiteQuality
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MQ
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FS
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ClippingRankSum
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BaseQRankSum
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QD
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VQSLOD
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MQRankSum
type: SiteQuality
SIO_000300: 2.11e0

DP
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.25e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66694
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11574
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South Asian
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allele frequency: 6.05913717886573e-5
allele num: 16504
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

QD
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InbreedingCoeff
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VQSLOD
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ClippingRankSum
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ReadPosRankSum
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FS
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BaseQRankSum
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MQ
type: SiteQuality
SIO_000300: 5.336e1

MQRankSum
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DP
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SIO_000300: 2.682998e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele frequency: 0.0e0
allele num: 9794
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8624
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Latino
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allele frequency: 1.209398756046994e-3
allele num: 11576
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 66704
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

MQRankSum
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QD
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MQ
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BaseQRankSum
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InbreedingCoeff
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VQSLOD
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DP
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ReadPosRankSum
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SIO_000300: 1.79e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
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SIO_000300: -2.78e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9794
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 2.997871511227029e-5
allele num: 66714
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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VQSLOD
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FS
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MQRankSum
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DP
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MQ
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ReadPosRankSum
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ClippingRankSum
type: SiteQuality
SIO_000300: 7.99e-1

InbreedingCoeff
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BaseQRankSum
type: SiteQuality
SIO_000300: -6.6e-1

QD
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
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allele count: 4
allele frequency: 4.084133142740453e-4
allele num: 9794
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
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MQ
type: SiteQuality
SIO_000300: 4.995e1

InbreedingCoeff
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QD
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MQRankSum
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BaseQRankSum
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SIO_000300: 4.29e0

DP
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SIO_000300: 2.683205e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.14e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.12e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.498845888665727e-5
allele num: 66718
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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African
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East Asian
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South Asian
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MQRankSum
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ClippingRankSum
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MQ
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QD
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ReadPosRankSum
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InbreedingCoeff
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BaseQRankSum
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FS
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VQSLOD
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele num: 6614
num of homozygotes: 0

Other
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East Asian
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South Asian
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European (Non-Finnish)
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African
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Latino
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ReadPosRankSum
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BaseQRankSum
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MQ
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MQRankSum
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VQSLOD
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FS
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DP
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ClippingRankSum
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InbreedingCoeff
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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European (Non-Finnish)
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East Asian
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African
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Latino
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European (Finnish)
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Other
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FS
type: SiteQuality
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ReadPosRankSum
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DP
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MQ
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VQSLOD
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QD
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BaseQRankSum
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MQRankSum
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InbreedingCoeff
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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European (Non-Finnish)
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allele num: 66714
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Latino
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South Asian
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Other
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European (Finnish)
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East Asian
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InbreedingCoeff
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MQ
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FS
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MQRankSum
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ReadPosRankSum
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VQSLOD
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DP
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BaseQRankSum
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QD
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele num: 66722
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Latino
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African
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South Asian
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European (Finnish)
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Other
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East Asian
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DP
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QD
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VQSLOD
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BaseQRankSum
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FS
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MQ
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MQRankSum
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ClippingRankSum
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InbreedingCoeff
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.498756032493031e-5
allele num: 66722
num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
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allele frequency: 6.05766900896535e-5
allele num: 16508
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MQ
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QD
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FS
type: SiteQuality
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InbreedingCoeff
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MQRankSum
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ReadPosRankSum
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DP
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ClippingRankSum
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SIO_000300: -6.69e-1

VQSLOD
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SIO_000300: -2.659e0

BaseQRankSum
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SIO_000300: -2.678e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

European (Non-Finnish)
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allele count: 5
allele frequency: 7.493555542233679e-5
allele num: 66724
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

African
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allele frequency: 1.02082482645978e-4
allele num: 9796
num of homozygotes: 0

South Asian
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VQSLOD
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BaseQRankSum
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DP
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ReadPosRankSum
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MQ
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MQRankSum
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ClippingRankSum
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QD
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FS
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InbreedingCoeff
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SIO_000300: 7.6e-3

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
allele num: 11576
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African
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allele count: 1
allele frequency: 1.021450459652707e-4
allele num: 9790
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66700
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VQSLOD
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MQ
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QD
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MQRankSum
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DP
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ReadPosRankSum
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FS
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SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ClippingRankSum
type: SiteQuality
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele frequency: 3.481894150417827e-4
allele num: 8616
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

InbreedingCoeff
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BaseQRankSum
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ReadPosRankSum
type: SiteQuality
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FS
type: SiteQuality
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MQRankSum
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QD
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ClippingRankSum
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SIO_000300: -6.929999999999999e-1

DP
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 4.618e1

VQSLOD
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.499745043342632e-5
allele num: 66678
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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VQSLOD
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FS
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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MQ
type: SiteQuality
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MQRankSum
type: SiteQuality
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QD
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DP
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9788
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 2.999490086685263e-5
allele num: 66678
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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East Asian
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num of homozygotes: 0

QD
type: SiteQuality
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MQRankSum
type: SiteQuality
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FS
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MQ
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ReadPosRankSum
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VQSLOD
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InbreedingCoeff
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DP
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ClippingRankSum
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
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num of homozygotes: 0

Other
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Latino
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South Asian
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African
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 1.499880009599232e-5
allele num: 66672
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InbreedingCoeff
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MQ
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QD
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VQSLOD
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ReadPosRankSum
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FS
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ClippingRankSum
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DP
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MQRankSum
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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num of homozygotes: 0

European (Finnish)
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Latino
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allele num: 11570
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African
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European (Non-Finnish)
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South Asian
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Other
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ReadPosRankSum
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InbreedingCoeff
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DP
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FS
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MQRankSum
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VQSLOD
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MQ
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QD
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BaseQRankSum
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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European (Non-Finnish)
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African
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South Asian
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Latino
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East Asian
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Other
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MQRankSum
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MQ
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QD
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InbreedingCoeff
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FS
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ReadPosRankSum
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ClippingRankSum
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BaseQRankSum
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VQSLOD
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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Latino
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.515381118351265e-5
allele num: 65990
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9718
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16458
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.953e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.09e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.03e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.4e-3

QD
type: SiteQuality
SIO_000300: 1.011e1

VQSLOD
type: SiteQuality
SIO_000300: -1.629e0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.1e-2

MQ
type: SiteQuality
SIO_000300: 5.556e1

MQRankSum
type: SiteQuality
SIO_000300: 2.66e0

DP
type: SiteQuality
SIO_000300: 2.490013e6

GenotypeQuality
all individuals: 20
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 35894
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 160
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 172
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 77
bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 381
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 645
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 125
bin: 4.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 822
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6238
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.46830530401035e-5
allele num: 15460
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 58560
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8992
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9766
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7364
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.68e0

VQSLOD
type: SiteQuality
SIO_000300: -2.782e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.25e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -8.9e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.461e0

MQ
type: SiteQuality
SIO_000300: 4.743e1

QD
type: SiteQuality
SIO_000300: 1.376e1

MQRankSum
type: SiteQuality
SIO_000300: -1.055e0

DP
type: SiteQuality
SIO_000300: 2.280654e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.69e0

GenotypeQuality
all individuals: 656
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 466
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1328
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 662
bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2484
bin: 2.5e0
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 836
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2666
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2972
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7976
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4726
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 352
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2078
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 4.331254331254331e-5
allele num: 23088
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.05e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.69e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.39e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.6e-2

FS
type: SiteQuality
SIO_000300: 3.44e0

QD
type: SiteQuality
SIO_000300: 6.08e0

MQ
type: SiteQuality
SIO_000300: 5.72e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.095e0

DP
type: SiteQuality
SIO_000300: 2.133151e6

ClippingRankSum
type: SiteQuality
SIO_000300: 5.649999999999999e-1

GenotypeQuality
all individuals: 5708
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 286
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7960
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 99
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 71
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 153
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 477
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variant carriers: 0

GenotypeQuality
all individuals: 125
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 646
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 521
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2028
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3542
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 238
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 6.845564074479737e-5
allele num: 14608
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.734906315058987e-4
allele num: 5764
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1310
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 818
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.66e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.44e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.561e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 4.3e0

VQSLOD
type: SiteQuality
SIO_000300: 1.75e0

DP
type: SiteQuality
SIO_000300: 2.130989e6

MQ
type: SiteQuality
SIO_000300: 5.795e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.49e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.27e-1

GenotypeQuality
all individuals: 629
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3340
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3676
bin: 3.25e1
variant carriers: 1

GenotypeQuality
all individuals: 4825
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1292
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4651
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4993
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1093
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 980
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 794
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2129
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 672
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.660483758214102e-5
allele num: 42914
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6858
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 620
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5004
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6854
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 8.568980291345329e-5
allele num: 11670
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4818
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.628e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.49e0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.0e-2

MQRankSum
type: SiteQuality
SIO_000300: 3.11e-1

QD
type: SiteQuality
SIO_000300: 1.884e1

MQ
type: SiteQuality
SIO_000300: 5.848e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.0e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -2.4e-1

DP
type: SiteQuality
SIO_000300: 1.546279e6

GenotypeQuality
all individuals: 672
bin: 8.75e1
variant carriers: 670

GenotypeQuality
all individuals: 4651
bin: 1.75e1
variant carriers: 4630

GenotypeQuality
all individuals: 4875
bin: 2.5e0
variant carriers: 4490

GenotypeQuality
all individuals: 3676
bin: 3.25e1
variant carriers: 3661

GenotypeQuality
all individuals: 4825
bin: 1.25e1
variant carriers: 4808

GenotypeQuality
all individuals: 4311
bin: 2.25e1
variant carriers: 4265

GenotypeQuality
all individuals: 1820
bin: 5.75e1
variant carriers: 1814

GenotypeQuality
all individuals: 1093
bin: 7.25e1
variant carriers: 1092

GenotypeQuality
all individuals: 1559
bin: 6.25e1
variant carriers: 1531

GenotypeQuality
all individuals: 2129
bin: 5.25e1
variant carriers: 2123

GenotypeQuality
all individuals: 980
bin: 7.75e1
variant carriers: 977

GenotypeQuality
all individuals: 1292
bin: 6.75e1
variant carriers: 1281

African
type: Population
allele count: 4829
allele frequency: 7.045520863729209e-1
allele num: 6854
num of homozygotes: 1458

South Asian
type: Population
allele count: 7103
allele frequency: 6.086546700942588e-1
allele num: 11670
num of homozygotes: 1312

European (Non-Finnish)
type: Population
allele count: 30972
allele frequency: 7.21722514797036e-1
allele num: 42914
num of homozygotes: 9581

East Asian
type: Population
allele count: 3976
allele frequency: 7.945643485211831e-1
allele num: 5004
num of homozygotes: 1474

European (Finnish)
type: Population
allele count: 4134
allele frequency: 8.580323785803238e-1
allele num: 4818
num of homozygotes: 1725

Latino
type: Population
allele count: 4768
allele frequency: 6.952464275298921e-1
allele num: 6858
num of homozygotes: 1340

Other
type: Population
allele count: 451
allele frequency: 7.274193548387097e-1
allele num: 620
num of homozygotes: 142

DP
type: SiteQuality
SIO_000300: 1.546279e6

MQ
type: SiteQuality
SIO_000300: 5.848e1

QD
type: SiteQuality
SIO_000300: 1.884e1

MQRankSum
type: SiteQuality
SIO_000300: 3.11e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.4e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.0e-3

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.628e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.49e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.0e-2

GenotypeQuality
all individuals: 9031
bin: 9.75e1
variant carriers: 181

GenotypeQuality
all individuals: 1820
bin: 5.75e1
variant carriers: 58

GenotypeQuality
all individuals: 4651
bin: 1.75e1
variant carriers: 235

GenotypeQuality
all individuals: 2960
bin: 4.25e1
variant carriers: 104

GenotypeQuality
all individuals: 672
bin: 8.75e1
variant carriers: 10

GenotypeQuality
all individuals: 4875
bin: 2.5e0
variant carriers: 208

GenotypeQuality
all individuals: 1559
bin: 6.25e1
variant carriers: 52

GenotypeQuality
all individuals: 629
bin: 9.25e1
variant carriers: 17

GenotypeQuality
all individuals: 980
bin: 7.75e1
variant carriers: 24

GenotypeQuality
all individuals: 4825
bin: 1.25e1
variant carriers: 236

GenotypeQuality
all individuals: 1093
bin: 7.25e1
variant carriers: 30

GenotypeQuality
all individuals: 794
bin: 8.25e1
variant carriers: 14

Other
type: Population
allele count: 11
allele frequency: 1.774193548387097e-2
allele num: 620
num of homozygotes: 0

East Asian
type: Population
allele count: 106
allele frequency: 2.118305355715428e-2
allele num: 5004
num of homozygotes: 0

African
type: Population
allele count: 71
allele frequency: 1.03589145024803e-2
allele num: 6854
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 14
allele frequency: 2.9057700290577e-3
allele num: 4818
num of homozygotes: 0

Latino
type: Population
allele count: 113
allele frequency: 1.647710702828813e-2
allele num: 6858
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 622
allele frequency: 1.449410448804586e-2
allele num: 42914
num of homozygotes: 1

South Asian
type: Population
allele count: 328
allele frequency: 2.810625535561268e-2
allele num: 11670
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.0e-2

MQRankSum
type: SiteQuality
SIO_000300: 3.11e-1

MQ
type: SiteQuality
SIO_000300: 5.848e1

QD
type: SiteQuality
SIO_000300: 1.884e1

VQSLOD
type: SiteQuality
SIO_000300: 2.49e0

DP
type: SiteQuality
SIO_000300: 1.546279e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.628e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.0e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -2.4e-1

GenotypeQuality
all individuals: 4993
bin: 7.5e0
variant carriers: 23

GenotypeQuality
all individuals: 672
bin: 8.75e1
variant carriers: 2

GenotypeQuality
all individuals: 2129
bin: 5.25e1
variant carriers: 8

GenotypeQuality
all individuals: 4651
bin: 1.75e1
variant carriers: 7

GenotypeQuality
all individuals: 4311
bin: 2.25e1
variant carriers: 12

GenotypeQuality
all individuals: 2960
bin: 4.25e1
variant carriers: 9

GenotypeQuality
all individuals: 4825
bin: 1.25e1
variant carriers: 18

GenotypeQuality
all individuals: 9031
bin: 9.75e1
variant carriers: 7

GenotypeQuality
all individuals: 1292
bin: 6.75e1
variant carriers: 7

GenotypeQuality
all individuals: 1559
bin: 6.25e1
variant carriers: 7

GenotypeQuality
all individuals: 629
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 3676
bin: 3.25e1
variant carriers: 34

South Asian
type: Population
allele count: 35
allele frequency: 2.999143101970865e-3
allele num: 11670
num of homozygotes: 0

African
type: Population
allele count: 14
allele frequency: 2.042602859644004e-3
allele num: 6854
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 86
allele frequency: 2.004008016032064e-3
allele num: 42914
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.998401278976818e-4
allele num: 5004
num of homozygotes: 0

Latino
type: Population
allele count: 8
allele frequency: 1.166520851560222e-3
allele num: 6858
num of homozygotes: 0

Other
type: Population
allele count: 2
allele frequency: 3.225806451612903e-3
allele num: 620
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4818
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.49e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.628e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.0e-3

MQ
type: SiteQuality
SIO_000300: 5.848e1

MQRankSum
type: SiteQuality
SIO_000300: 3.11e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.884e1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.0e-2

DP
type: SiteQuality
SIO_000300: 1.546279e6

ClippingRankSum
type: SiteQuality
SIO_000300: -2.4e-1

GenotypeQuality
all individuals: 963
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2324
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 908
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 221
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 302
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 446
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GenotypeQuality
all individuals: 253
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 311
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1288
bin: 3.75e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 1.051745898190997e-4
allele num: 9508
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 56618
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8698
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 802
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.404494382022472e-4
allele num: 7120
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15286
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6172
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.376e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.18e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.69e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.77e0

FS
type: SiteQuality
SIO_000300: 1.896e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.357e0

QD
type: SiteQuality
SIO_000300: 1.773e1

MQ
type: SiteQuality
SIO_000300: 6.051e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.4e-3

DP
type: SiteQuality
SIO_000300: 1.353672e6

GenotypeQuality
all individuals: 2832
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 917
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 466
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1412
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 510
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 311
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GenotypeQuality
all individuals: 2634
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2779
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 235
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.59108884787767e-5
allele num: 15172
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 800
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 55982
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6106
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9358
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7014
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.656e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.684e0

VQSLOD
type: SiteQuality
SIO_000300: -1.217e0

MQRankSum
type: SiteQuality
SIO_000300: -1.24e-1

DP
type: SiteQuality
SIO_000300: 1.316092e6

ClippingRankSum
type: SiteQuality
SIO_000300: -2.766e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.1e-3

QD
type: SiteQuality
SIO_000300: 7.83e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.5e-1

GenotypeQuality
all individuals: 705
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 694
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2232
bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 475
bin: 7.75e1
variant carriers: 3

GenotypeQuality
all individuals: 479
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16072
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 492
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 150
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2385
bin: 6.75e1
variant carriers: 1

African
type: Population
allele count: 121
allele frequency: 1.515910799298421e-2
allele num: 7982
num of homozygotes: 3

Latino
type: Population
allele count: 5
allele frequency: 5.938242280285036e-4
allele num: 8420
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5838
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6446
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 51060
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 748
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14452
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.837e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.4e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.37e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.193217e6

MQ
type: SiteQuality
SIO_000300: 5.818e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.01e-1

QD
type: SiteQuality
SIO_000300: 1.427e1

VQSLOD
type: SiteQuality
SIO_000300: -1.964e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.33e-1

GenotypeQuality
all individuals: 299
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10166
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 358
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 4643
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2651
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 451
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26082
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 604
bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 49536
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8162
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 3.22061191626409e-4
allele num: 6210
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7798
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5754
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14336
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 736
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.95e-1

MQ
type: SiteQuality
SIO_000300: 5.766e1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.3e-2

QD
type: SiteQuality
SIO_000300: 1.36e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.21e0

VQSLOD
type: SiteQuality
SIO_000300: -1.942e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.035228e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.500000000000001e-3

MQRankSum
type: SiteQuality
SIO_000300: -7.31e-1

GenotypeQuality
all individuals: 753
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 347
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 296
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 224
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 307
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1975
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 426
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4639
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 291
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variant carriers: 0

GenotypeQuality
all individuals: 1538
bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14300
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6202
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.283367556468173e-4
allele num: 7792
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 49410
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8100
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 738
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5754
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.557e1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.169999999999999e-1

MQ
type: SiteQuality
SIO_000300: 5.763e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.800000000000001e-3

MQRankSum
type: SiteQuality
SIO_000300: 5.33e-1

VQSLOD
type: SiteQuality
SIO_000300: -8.413e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.56e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.55e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.033791e6

GenotypeQuality
all individuals: 5442
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1145
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 945
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1139
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25517
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 314
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4650
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variant carriers: 0

GenotypeQuality
all individuals: 145
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2589
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 323
bin: 5.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5648
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7694
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 708
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5966
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14006
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7554
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.21460783074135e-5
allele num: 47454
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.69e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.01e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.022e0

MQRankSum
type: SiteQuality
SIO_000300: -2.84e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.49e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.02e-2

DP
type: SiteQuality
SIO_000300: 9.76701e5

QD
type: SiteQuality
SIO_000300: 1.125e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.12e-1

GenotypeQuality
all individuals: 466
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 986
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 76
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 22
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 155
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 647
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variant carriers: 0

GenotypeQuality
all individuals: 630
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variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 360
bin: 5.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5892
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 160
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 76
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 82
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 124
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1812
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 6.840000000000001e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.41e0

DP
type: SiteQuality
SIO_000300: 8.9523e4

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -2.286e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.18e-2

MQRankSum
type: SiteQuality
SIO_000300: 9.05e-1

QD
type: SiteQuality
SIO_000300: 6.5e0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.33e-1

GenotypeQuality
all individuals: 647
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 986
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 85
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variant carriers: 0

GenotypeQuality
all individuals: 17
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variant carriers: 0

GenotypeQuality
all individuals: 360
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variant carriers: 0

GenotypeQuality
all individuals: 630
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variant carriers: 0

GenotypeQuality
all individuals: 229
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variant carriers: 0

GenotypeQuality
all individuals: 76
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 221
bin: 4.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 76
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1812
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 160
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.697216564833673e-4
allele num: 5892
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 82
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 124
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 6.5e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.18e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 6.840000000000001e-1

MQRankSum
type: SiteQuality
SIO_000300: 9.05e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.41e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.33e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.286e0

DP
type: SiteQuality
SIO_000300: 8.9523e4

GenotypeQuality
all individuals: 638
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 204
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 126
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 2302
bin: 2.5e0
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GenotypeQuality
all individuals: 76
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variant carriers: 3

GenotypeQuality
all individuals: 19
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variant carriers: 0

GenotypeQuality
all individuals: 37
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variant carriers: 1

GenotypeQuality
all individuals: 328
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GenotypeQuality
all individuals: 45
bin: 9.75e1
variant carriers: 25

GenotypeQuality
all individuals: 216
bin: 4.25e1
variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 158
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 2.219755826859046e-3
allele num: 1802
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 122
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 78
num of homozygotes: 0

South Asian
type: Population
allele count: 20
allele frequency: 3.408316291751875e-3
allele num: 5868
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.25e-2
allele num: 80
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.25e-2

MQRankSum
type: SiteQuality
SIO_000300: 4.66e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.15e0

FS
type: SiteQuality
SIO_000300: 4.032e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.78e-1

DP
type: SiteQuality
SIO_000300: 8.9889e4

BaseQRankSum
type: SiteQuality
SIO_000300: -1.3e0

MQ
type: SiteQuality
SIO_000300: 5.604e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.51e-1

QD
type: SiteQuality
SIO_000300: 7.84e0

GenotypeQuality
all individuals: 16
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 118
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variant carriers: 0

GenotypeQuality
all individuals: 51
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GenotypeQuality
all individuals: 135
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variant carriers: 0

GenotypeQuality
all individuals: 471
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variant carriers: 0

GenotypeQuality
all individuals: 180
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GenotypeQuality
all individuals: 20
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GenotypeQuality
all individuals: 13
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variant carriers: 0

GenotypeQuality
all individuals: 242
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 491
bin: 3.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 80
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1828
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 124
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 164
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.686340640809444e-4
allele num: 5930
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 84
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.853e0

VQSLOD
type: SiteQuality
SIO_000300: -2.722e0

QD
type: SiteQuality
SIO_000300: 4.81e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.37e-1

DP
type: SiteQuality
SIO_000300: 9.1338e4

BaseQRankSum
type: SiteQuality
SIO_000300: -1.312e0

MQ
type: SiteQuality
SIO_000300: 5.933e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.759999999999999e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.97e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.83e-1

GenotypeQuality
all individuals: 609
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 91
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GenotypeQuality
all individuals: 822
bin: 2.5e0
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GenotypeQuality
all individuals: 13
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variant carriers: 1

GenotypeQuality
all individuals: 439
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 9.75e1
variant carriers: 62

GenotypeQuality
all individuals: 277
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1567
bin: 6.25e1
variant carriers: 2

GenotypeQuality
all individuals: 88
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 122
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 166
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.111111111111111e-2
allele num: 90
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1886
num of homozygotes: 0

South Asian
type: Population
allele count: 70
allele frequency: 1.158940397350993e-2
allele num: 6040
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 78
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.19e0

DP
type: SiteQuality
SIO_000300: 9.7843e4

MQRankSum
type: SiteQuality
SIO_000300: 2.46e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.96e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.23e-2

FS
type: SiteQuality
SIO_000300: 1.278e0

MQ
type: SiteQuality
SIO_000300: 5.604e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.97e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.78e-1

QD
type: SiteQuality
SIO_000300: 1.048e1

GenotypeQuality
all individuals: 256
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 88
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 432
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 131
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1159
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variant carriers: 0

GenotypeQuality
all individuals: 267
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 47
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GenotypeQuality
all individuals: 1271
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variant carriers: 0

GenotypeQuality
all individuals: 33
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variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6136
num of homozygotes: 0

East Asian
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European (Non-Finnish)
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African
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Latino
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Other
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ClippingRankSum
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BaseQRankSum
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MQ
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ReadPosRankSum
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InbreedingCoeff
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FS
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QD
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VQSLOD
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MQRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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European (Finnish)
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Latino
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South Asian
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East Asian
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Other
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European (Non-Finnish)
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MQ
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InbreedingCoeff
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QD
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BaseQRankSum
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ReadPosRankSum
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FS
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DP
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MQRankSum
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VQSLOD
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ClippingRankSum
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GenotypeQuality
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variant carriers: 88

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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Other
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African
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Latino
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East Asian
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South Asian
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allele frequency: 7.61142686209991e-1
allele num: 6686
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European (Finnish)
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allele num: 0
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MQ
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SIO_000300: 5.552e1

DP
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QD
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ReadPosRankSum
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BaseQRankSum
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VQSLOD
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FS
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InbreedingCoeff
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MQRankSum
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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European (Finnish)
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European (Non-Finnish)
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African
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South Asian
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Latino
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QD
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ReadPosRankSum
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MQRankSum
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FS
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InbreedingCoeff
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VQSLOD
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MQ
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BaseQRankSum
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DP
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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Other
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allele frequency: 8.333333333333333e-2
allele num: 84
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European (Finnish)
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European (Non-Finnish)
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allele frequency: 1.423401688781665e-1
allele num: 1658
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East Asian
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South Asian
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Latino
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allele num: 72
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VQSLOD
type: SiteQuality
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MQRankSum
type: SiteQuality
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FS
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DP
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MQ
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SIO_000300: 5.635e1

ClippingRankSum
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InbreedingCoeff
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QD
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BaseQRankSum
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SIO_000300: -1.55e-1

ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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East Asian
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European (Finnish)
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European (Non-Finnish)
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allele frequency: 4.381443298969072e-2
allele num: 1552
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Other
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African
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allele frequency: 1.333333333333333e-2
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South Asian
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allele num: 5166
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BaseQRankSum
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MQRankSum
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QD
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MQ
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FS
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ClippingRankSum
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DP
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InbreedingCoeff
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VQSLOD
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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European (Finnish)
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African
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South Asian
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European (Non-Finnish)
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East Asian
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Other
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FS
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VQSLOD
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MQRankSum
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MQ
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QD
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BaseQRankSum
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ReadPosRankSum
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InbreedingCoeff
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DP
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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African
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East Asian
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Other
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South Asian
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European (Non-Finnish)
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Latino
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DP
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MQRankSum
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ReadPosRankSum
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VQSLOD
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MQ
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ClippingRankSum
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FS
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InbreedingCoeff
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BaseQRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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African
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East Asian
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European (Finnish)
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Latino
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European (Non-Finnish)
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Other
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ClippingRankSum
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VQSLOD
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QD
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BaseQRankSum
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MQRankSum
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FS
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InbreedingCoeff
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ReadPosRankSum
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MQ
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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African
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Latino
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European (Finnish)
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South Asian
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East Asian
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Other
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BaseQRankSum
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VQSLOD
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FS
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DP
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MQRankSum
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MQ
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ClippingRankSum
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InbreedingCoeff
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QD
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 150
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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African
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele frequency: NaN
allele num: 0
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East Asian
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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South Asian
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ReadPosRankSum
type: SiteQuality
SIO_000300: 1.88e0

BaseQRankSum
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VQSLOD
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FS
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MQRankSum
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InbreedingCoeff
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DP
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MQ
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SIO_000300: 4.872e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.61e-1

QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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European (Finnish)
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allele frequency: NaN
allele num: 0
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European (Non-Finnish)
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allele frequency: 7.692307692307693e-3
allele num: 130
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Latino
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South Asian
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allele frequency: 1.54320987654321e-3
allele num: 648
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African
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Other
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DP
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SIO_000300: 1.02189e5

FS
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VQSLOD
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ReadPosRankSum
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QD
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ClippingRankSum
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SIO_000300: -1.179e0

BaseQRankSum
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SIO_000300: -4.21e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.014e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.7e-2

MQ
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SIO_000300: 5.499e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele count: 0
allele frequency: NaN
allele num: 0
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African
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East Asian
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South Asian
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allele frequency: 1.282051282051282e-2
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European (Non-Finnish)
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allele frequency: 2.868852459016394e-2
allele num: 244
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Other
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allele frequency: 8.333333333333333e-2
allele num: 12
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Latino
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ReadPosRankSum
type: SiteQuality
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VQSLOD
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ClippingRankSum
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MQRankSum
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QD
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DP
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FS
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InbreedingCoeff
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MQ
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele frequency: 4.545454545454546e-2
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Other
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African
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East Asian
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European (Non-Finnish)
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allele frequency: 6.967213114754098e-2
allele num: 244
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South Asian
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allele frequency: 4.212454212454213e-2
allele num: 546
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European (Finnish)
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allele count: 0
allele frequency: NaN
allele num: 0
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ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.298e-1

MQRankSum
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MQ
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SIO_000300: 4.462e1

QD
type: SiteQuality
SIO_000300: 6.52e0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.31e-1

FS
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SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 7.73e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.5e-1

DP
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SIO_000300: 9.2097e4

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 2.307692307692308e-1
allele num: 52
num of homozygotes: 4

European (Finnish)
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allele frequency: NaN
allele num: 0
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Other
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allele count: 5
allele frequency: 4.166666666666667e-1
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South Asian
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allele count: 221
allele frequency: 4.047619047619048e-1
allele num: 546
num of homozygotes: 85

Latino
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allele count: 11
allele frequency: 5.0e-1
allele num: 22
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East Asian
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allele count: 3
allele frequency: 1.666666666666667e-1
allele num: 18
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European (Non-Finnish)
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allele count: 127
allele frequency: 5.204918032786885e-1
allele num: 244
num of homozygotes: 52

BaseQRankSum
type: SiteQuality
SIO_000300: 7.31e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 9.2097e4

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.298e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.5e-1

QD
type: SiteQuality
SIO_000300: 6.52e0

VQSLOD
type: SiteQuality
SIO_000300: 7.73e0

MQ
type: SiteQuality
SIO_000300: 4.462e1

MQRankSum
type: SiteQuality
SIO_000300: -7.27e-1

ReadPosRankSum
type: SiteQuality
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GenotypeQuality
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variant carriers: 20

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele count: 4
allele frequency: 2.222222222222222e-1
allele num: 18
num of homozygotes: 2

European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 39
allele frequency: 1.598360655737705e-1
allele num: 244
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Latino
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allele frequency: 1.818181818181818e-1
allele num: 22
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South Asian
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allele count: 39
allele frequency: 7.142857142857142e-2
allele num: 546
num of homozygotes: 13

African
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allele frequency: 1.153846153846154e-1
allele num: 52
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Other
type: Population
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allele frequency: 0.0e0
allele num: 12
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InbreedingCoeff
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SIO_000300: 7.298e-1

MQRankSum
type: SiteQuality
SIO_000300: -7.27e-1

FS
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SIO_000300: 0.0e0

BaseQRankSum
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SIO_000300: 7.31e-1

ClippingRankSum
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SIO_000300: 5.5e-1

VQSLOD
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MQ
type: SiteQuality
SIO_000300: 4.462e1

DP
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QD
type: SiteQuality
SIO_000300: 6.52e0

ReadPosRankSum
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele frequency: 0.0e0
allele num: 22
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South Asian
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allele frequency: 9.157509157509158e-3
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Other
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African
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: NaN
allele num: 0
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 8.19672131147541e-3
allele num: 244
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East Asian
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allele frequency: 1.111111111111111e-1
allele num: 18
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MQ
type: SiteQuality
SIO_000300: 4.462e1

MQRankSum
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BaseQRankSum
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InbreedingCoeff
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FS
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VQSLOD
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DP
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QD
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ClippingRankSum
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele frequency: 1.111111111111111e-1
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European (Non-Finnish)
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Other
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Latino
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African
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allele frequency: 3.846153846153846e-2
allele num: 52
num of homozygotes: 0

European (Finnish)
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allele frequency: NaN
allele num: 0
num of homozygotes: 0

South Asian
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allele count: 6
allele frequency: 1.098901098901099e-2
allele num: 546
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BaseQRankSum
type: SiteQuality
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QD
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DP
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ReadPosRankSum
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FS
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MQRankSum
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VQSLOD
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InbreedingCoeff
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MQ
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele frequency: 0.0e0
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African
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East Asian
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South Asian
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allele num: 312
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European (Finnish)
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allele count: 0
allele frequency: NaN
allele num: 0
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Latino
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Other
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DP
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QD
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VQSLOD
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MQ
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FS
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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European (Non-Finnish)
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East Asian
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Other
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Latino
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South Asian
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allele frequency: 2.008032128514056e-3
allele num: 996
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European (Finnish)
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allele frequency: NaN
allele num: 0
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.33e-1

MQ
type: SiteQuality
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InbreedingCoeff
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DP
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MQRankSum
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BaseQRankSum
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QD
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FS
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ClippingRankSum
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 1166
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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Other
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African
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allele frequency: 0.0e0
allele num: 146
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 42
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.04549e5

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.61e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.219e0

VQSLOD
type: SiteQuality
SIO_000300: 5.07e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 4.495e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.98e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 2.22e0

QD
type: SiteQuality
SIO_000300: 4.52e0

GenotypeQuality
all individuals: 0
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 530
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1882
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 72
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 434
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3632
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 178
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 144
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.23e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.2e-2

MQ
type: SiteQuality
SIO_000300: 5.66e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.36e-1

QD
type: SiteQuality
SIO_000300: 2.31e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.9e-2

MQRankSum
type: SiteQuality
SIO_000300: -7.51e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.33e-1

DP
type: SiteQuality
SIO_000300: 1.26071e5

GenotypeQuality
all individuals: 1
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 6.25e1
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GenotypeQuality
all individuals: 237
bin: 3.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 456
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 182
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 84
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 166
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3980
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 4.721435316336166e-4
allele num: 2118
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.424e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.64e0

DP
type: SiteQuality
SIO_000300: 1.32199e5

VQSLOD
type: SiteQuality
SIO_000300: -2.017e0

BaseQRankSum
type: SiteQuality
SIO_000300: -8.25e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.03e0

MQ
type: SiteQuality
SIO_000300: 4.92e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.01e-2

MQRankSum
type: SiteQuality
SIO_000300: -2.637e0

QD
type: SiteQuality
SIO_000300: 1.57e0

GenotypeQuality
all individuals: 6
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 95
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 4.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 176
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2238
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 478
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 182
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4044
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 86
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.174e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.93e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.38e0

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.89e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.11e0

MQ
type: SiteQuality
SIO_000300: 5.743e1

QD
type: SiteQuality
SIO_000300: 3.69e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.75e-2

DP
type: SiteQuality
SIO_000300: 1.36476e5

GenotypeQuality
all individuals: 348
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 6
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 266
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4044
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2238
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 86
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 2.092050209205021e-3
allele num: 478
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 176
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 1.098901098901099e-2
allele num: 182
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.75e-2

FS
type: SiteQuality
SIO_000300: 2.174e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.93e-1

QD
type: SiteQuality
SIO_000300: 3.69e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.38e0

MQ
type: SiteQuality
SIO_000300: 5.743e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.89e-1

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.36476e5

VQSLOD
type: SiteQuality
SIO_000300: 1.11e0

GenotypeQuality
all individuals: 8
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 0
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 17
bin: 9.75e1
variant carriers: 3

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 170
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 2.465483234714004e-4
allele num: 4056
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 182
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 86
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 484
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 8.628127696289905e-4
allele num: 2318
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.18e-1

FS
type: SiteQuality
SIO_000300: 7.347e0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.31e-1

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 5.19e0

DP
type: SiteQuality
SIO_000300: 1.42471e5

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.587e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.27e-1

MQ
type: SiteQuality
SIO_000300: 5.814e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.31e-1

GenotypeQuality
all individuals: 17
bin: 9.75e1
variant carriers: 11

GenotypeQuality
all individuals: 428
bin: 1.75e1
variant carriers: 3

GenotypeQuality
all individuals: 660
bin: 1.25e1
variant carriers: 5

GenotypeQuality
all individuals: 1951
bin: 2.5e0
variant carriers: 11

GenotypeQuality
all individuals: 8
bin: 8.25e1
variant carriers: 7

GenotypeQuality
all individuals: 7
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 16
bin: 4.75e1
variant carriers: 3

East Asian
type: Population
allele count: 1
allele frequency: 5.494505494505495e-3
allele num: 182
num of homozygotes: 0

South Asian
type: Population
allele count: 5
allele frequency: 1.232741617357002e-3
allele num: 4056
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 170
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 2.066115702479339e-3
allele num: 484
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 86
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 2.588438308886971e-3
allele num: 2318
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.31e-1

MQ
type: SiteQuality
SIO_000300: 5.814e1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.31e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.27e-1

DP
type: SiteQuality
SIO_000300: 1.42471e5

FS
type: SiteQuality
SIO_000300: 7.347e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.587e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.18e-1

QD
type: SiteQuality
SIO_000300: 5.19e0

GenotypeQuality
all individuals: 20854
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 101
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 660
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 7
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 16
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3
bin: 9.25e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2318
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 7.396449704142012e-4
allele num: 4056
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 5.882352941176471e-3
allele num: 170
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 86
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 484
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 182
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MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.31e-1

QD
type: SiteQuality
SIO_000300: 5.19e0

DP
type: SiteQuality
SIO_000300: 1.42471e5

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.587e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.31e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.27e-1

FS
type: SiteQuality
SIO_000300: 7.347e0

VQSLOD
type: SiteQuality
SIO_000300: 2.18e-1

MQ
type: SiteQuality
SIO_000300: 5.814e1

GenotypeQuality
all individuals: 668
bin: 1.25e1
variant carriers: 6

GenotypeQuality
all individuals: 3368
bin: 2.25e1
variant carriers: 18

GenotypeQuality
all individuals: 466
bin: 1.75e1
variant carriers: 11

GenotypeQuality
all individuals: 73
bin: 5.75e1
variant carriers: 11

GenotypeQuality
all individuals: 38
bin: 7.75e1
variant carriers: 8

GenotypeQuality
all individuals: 121
bin: 5.25e1
variant carriers: 21

East Asian
type: Population
allele count: 2
allele frequency: 1.041666666666667e-2
allele num: 192
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 29
allele frequency: 1.162790697674419e-2
allele num: 2494
num of homozygotes: 0

South Asian
type: Population
allele count: 51
allele frequency: 1.144524236983842e-2
allele num: 4456
num of homozygotes: 0

African
type: Population
allele count: 7
allele frequency: 1.446280991735537e-2
allele num: 484
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.111111111111111e-2
allele num: 90
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 5.208333333333333e-3
allele num: 192
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 3.69e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.96e-1

MQ
type: SiteQuality
SIO_000300: 5.096e1

VQSLOD
type: SiteQuality
SIO_000300: 3.77e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.843e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.718e0

DP
type: SiteQuality
SIO_000300: 1.46207e5

FS
type: SiteQuality
SIO_000300: 3.7477e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.4e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.47e-1

GenotypeQuality
all individuals: 72
bin: 6.75e1
variant carriers: 20

GenotypeQuality
all individuals: 187
bin: 3.75e1
variant carriers: 11

GenotypeQuality
all individuals: 3368
bin: 2.25e1
variant carriers: 27

GenotypeQuality
all individuals: 73
bin: 4.25e1
variant carriers: 8

GenotypeQuality
all individuals: 73
bin: 4.75e1
variant carriers: 23

GenotypeQuality
all individuals: 1023
bin: 9.75e1
variant carriers: 310

African
type: Population
allele count: 27
allele frequency: 5.578512396694215e-2
allele num: 484
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 1.5625e-2
allele num: 192
num of homozygotes: 0

South Asian
type: Population
allele count: 151
allele frequency: 3.388689407540395e-2
allele num: 4456
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

Other
type: Population
allele count: 5
allele frequency: 5.555555555555555e-2
allele num: 90
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 1.5625e-2
allele num: 192
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 106
allele frequency: 4.250200481154771e-2
allele num: 2494
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.77e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.4e-1

FS
type: SiteQuality
SIO_000300: 3.7477e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.843e-1

QD
type: SiteQuality
SIO_000300: 3.69e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.47e-1

MQ
type: SiteQuality
SIO_000300: 5.096e1

MQRankSum
type: SiteQuality
SIO_000300: -1.718e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.96e-1

DP
type: SiteQuality
SIO_000300: 1.46207e5

GenotypeQuality
all individuals: 380
bin: 3.25e1
variant carriers: 2

GenotypeQuality
all individuals: 32
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 72
bin: 6.75e1
variant carriers: 4

GenotypeQuality
all individuals: 150
bin: 6.25e1
variant carriers: 3

GenotypeQuality
all individuals: 86
bin: 8.25e1
variant carriers: 6

GenotypeQuality
all individuals: 1023
bin: 9.75e1
variant carriers: 125

East Asian
type: Population
allele count: 3
allele frequency: 1.5625e-2
allele num: 192
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 50
allele frequency: 2.004811547714515e-2
allele num: 2494
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

Other
type: Population
allele count: 3
allele frequency: 3.333333333333333e-2
allele num: 90
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.041666666666667e-2
allele num: 192
num of homozygotes: 0

African
type: Population
allele count: 6
allele frequency: 1.239669421487603e-2
allele num: 484
num of homozygotes: 0

South Asian
type: Population
allele count: 51
allele frequency: 1.144524236983842e-2
allele num: 4456
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.7477e1

MQ
type: SiteQuality
SIO_000300: 5.096e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.843e-1

QD
type: SiteQuality
SIO_000300: 3.69e0

MQRankSum
type: SiteQuality
SIO_000300: -1.718e0

VQSLOD
type: SiteQuality
SIO_000300: 3.77e-1

DP
type: SiteQuality
SIO_000300: 1.46207e5

BaseQRankSum
type: SiteQuality
SIO_000300: 3.4e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.96e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.47e-1