4-16188181-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16188181
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 16188181
    reference: chr 4
allele count: 1
allele frequency: 4.392515154177282e-5
allele num: 22766
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000422652
  ensembl transcript: ENST00000505603
  gene symbol: TAPT1
  hgvsc: ENST00000505603.1:c.*408A>G
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000305198
  ensembl transcript: ENST00000304584
  gene symbol: TAPT1
  hgvsc: ENST00000304584.8:c.236A>G
  hgvsp: ENSP00000305198.8:p.Asn79Ser
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000504281
  gene symbol: TAPT1
  hgvsc: ENST00000504281.1:n.257A>G
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000507425
  gene symbol: TAPT1
  hgvsc: ENST00000507425.1:n.369A>G
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000385347
  ensembl transcript: ENST00000405303
  gene symbol: TAPT1
  hgvsc: ENST00000405303.2:c.893A>G
  hgvsp: ENSP00000385347.2:p.Asn298Ser
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000382803
  ensembl transcript: ENST00000399920
  gene symbol: TAPT1
  hgvsc: ENST00000399920.3:c.560A>G
  hgvsp: ENSP00000382803.3:p.Asn187Ser
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000423359
  ensembl transcript: ENST00000513782
  gene symbol: TAPT1
  hgvsc: ENST00000513782.1:c.270A>G
  hgvsp: ENSP00000423359.1:p.Asn91Ser
  variant of: http://identifiers.org/hgnc/26887
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 604
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2017
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4666
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9197
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 772
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31575
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1002
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1174
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29697
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 320
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1879
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 166
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Asn298Ser
num of homozygotes: 0
population: African
population: South Asian
population: Other
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
reference allele: T
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS

4-16188238-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16188238
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 16188238
    reference: chr 4
allele count: 0
allele frequency: 0.0e0
allele num: 22940
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000422652
  ensembl transcript: ENST00000505603
  gene symbol: TAPT1
  hgvsc: ENST00000505603.1:c.*362-11T>C
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000382803
  ensembl transcript: ENST00000399920
  gene symbol: TAPT1
  hgvsc: ENST00000399920.3:c.514-11T>C
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000423359
  ensembl transcript: ENST00000513782
  gene symbol: TAPT1
  hgvsc: ENST00000513782.1:c.224-11T>C
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000385347
  ensembl transcript: ENST00000405303
  gene symbol: TAPT1
  hgvsc: ENST00000405303.2:c.847-11T>C
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000504281
  gene symbol: TAPT1
  hgvsc: ENST00000504281.1:n.200T>C
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000305198
  ensembl transcript: ENST00000304584
  gene symbol: TAPT1
  hgvsc: ENST00000304584.8:c.190-11T>C
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000507425
  gene symbol: TAPT1
  hgvsc: ENST00000507425.1:n.323-11T>C
  variant of: http://identifiers.org/hgnc/26887
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 32306
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 729
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3693
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1002
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 549
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9825
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1456
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1858
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2758
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 178
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 214
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29687
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 309
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1693
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 536
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Other
reference allele: A
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD

4-16188263-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16188263
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 16188263
    reference: chr 4
allele count: 1
allele frequency: 4.315180806075775e-5
allele num: 23174
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000504281
  gene symbol: TAPT1
  hgvsc: ENST00000504281.1:n.175T>C
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000385347
  ensembl transcript: ENST00000405303
  gene symbol: TAPT1
  hgvsc: ENST00000405303.2:c.847-36T>C
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000423359
  ensembl transcript: ENST00000513782
  gene symbol: TAPT1
  hgvsc: ENST00000513782.1:c.224-36T>C
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000382803
  ensembl transcript: ENST00000399920
  gene symbol: TAPT1
  hgvsc: ENST00000399920.3:c.514-36T>C
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000305198
  ensembl transcript: ENST00000304584
  gene symbol: TAPT1
  hgvsc: ENST00000304584.8:c.190-36T>C
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000422652
  ensembl transcript: ENST00000505603
  gene symbol: TAPT1
  hgvsc: ENST00000505603.1:c.*362-36T>C
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000507425
  gene symbol: TAPT1
  hgvsc: ENST00000507425.1:n.323-36T>C
  variant of: http://identifiers.org/hgnc/26887
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30747
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12863
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1001
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1299
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2050
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 603
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2456
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2066
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 220
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 315
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8890
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 518
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28268
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2754
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1060
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 676
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2679
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 521
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: A
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: MQ

4-16188268-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16188268
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 16188268
    reference: chr 4
allele count: 71
allele frequency: 3.033669458212271e-3
allele num: 23404
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000504281
  gene symbol: TAPT1
  hgvsc: ENST00000504281.1:n.170T>C
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000385347
  ensembl transcript: ENST00000405303
  gene symbol: TAPT1
  hgvsc: ENST00000405303.2:c.847-41T>C
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000382803
  ensembl transcript: ENST00000399920
  gene symbol: TAPT1
  hgvsc: ENST00000399920.3:c.514-41T>C
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000422652
  ensembl transcript: ENST00000505603
  gene symbol: TAPT1
  hgvsc: ENST00000505603.1:c.*362-41T>C
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000507425
  gene symbol: TAPT1
  hgvsc: ENST00000507425.1:n.323-41T>C
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000305198
  ensembl transcript: ENST00000304584
  gene symbol: TAPT1
  hgvsc: ENST00000304584.8:c.190-41T>C
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000423359
  ensembl transcript: ENST00000513782
  gene symbol: TAPT1
  hgvsc: ENST00000513782.1:c.224-41T>C
  variant of: http://identifiers.org/hgnc/26887
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2082
  bin: 1.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14104
  bin: 7.5e0
  variant carriers: 95
genotype depth: GenotypeDepth
  all individuals: 2144
  bin: 1.25e1
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 3.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29992
  bin: 2.5e0
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2524
  bin: 2.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1231
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1001
  bin: 9.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 713
  bin: 2.75e1
  variant carriers: 15
genotype quality: GenotypeQuality
  all individuals: 587
  bin: 4.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2206
  bin: 1.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 526
  bin: 6.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 2414
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27791
  bin: 7.5e0
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 10131
  bin: 2.25e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 5.75e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 260
  bin: 5.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 2829
  bin: 9.75e1
  variant carriers: 88
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: South Asian
population: African
population: Other
population: European (Non-Finnish)
population: East Asian
reference allele: A
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: FS

4-16188270-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16188270
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 16188270
    reference: chr 4
allele count: 1
allele frequency: 4.274600324869625e-5
allele num: 23394
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000385347
  ensembl transcript: ENST00000405303
  gene symbol: TAPT1
  hgvsc: ENST00000405303.2:c.847-43A>C
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000422652
  ensembl transcript: ENST00000505603
  gene symbol: TAPT1
  hgvsc: ENST00000505603.1:c.*362-43A>C
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000504281
  gene symbol: TAPT1
  hgvsc: ENST00000504281.1:n.168A>C
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000305198
  ensembl transcript: ENST00000304584
  gene symbol: TAPT1
  hgvsc: ENST00000304584.8:c.190-43A>C
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000423359
  ensembl transcript: ENST00000513782
  gene symbol: TAPT1
  hgvsc: ENST00000513782.1:c.224-43A>C
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000507425
  gene symbol: TAPT1
  hgvsc: ENST00000507425.1:n.323-43A>C
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000382803
  ensembl transcript: ENST00000399920
  gene symbol: TAPT1
  hgvsc: ENST00000399920.3:c.514-43A>C
  variant of: http://identifiers.org/hgnc/26887
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2072
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2153
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1185
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14558
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1001
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29749
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2601
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2370
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 443
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2273
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27593
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2756
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2319
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 650
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 982
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 525
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 718
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
reference allele: T
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff

4-16188368-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16188368
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 16188368
    reference: chr 4
allele count: 1
allele frequency: 8.860064146864424e-6
allele num: 112866
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000504281
  gene symbol: TAPT1
  hgvsc: ENST00000504281.1:n.70T>C
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000423359
  ensembl transcript: ENST00000513782
  gene symbol: TAPT1
  hgvsc: ENST00000513782.1:c.224-141T>C
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000382803
  ensembl transcript: ENST00000399920
  gene symbol: TAPT1
  hgvsc: ENST00000399920.3:c.513+36T>C
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000305198
  ensembl transcript: ENST00000304584
  gene symbol: TAPT1
  hgvsc: ENST00000304584.8:c.190-141T>C
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000422652
  ensembl transcript: ENST00000505603
  gene symbol: TAPT1
  hgvsc: ENST00000505603.1:c.*361+36T>C
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000507425
  gene symbol: TAPT1
  hgvsc: ENST00000507425.1:n.322+36T>C
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000385347
  ensembl transcript: ENST00000405303
  gene symbol: TAPT1
  hgvsc: ENST00000405303.2:c.846+36T>C
  variant of: http://identifiers.org/hgnc/26887
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9706
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 511
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22100
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1115
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6134
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3539
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 723
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 738
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10038
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 635
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3496
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29116
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1073
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 197
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2248
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 243
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4360
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 730
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3287
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4038
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 131
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Other
population: African
population: European (Finnish)
reference allele: A
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD

4-16188369-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16188369
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 16188369
    reference: chr 4
allele count: 15
allele frequency: 1.327316166710911e-4
allele num: 113010
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000507425
  gene symbol: TAPT1
  hgvsc: ENST00000507425.1:n.322+35A>T
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000382803
  ensembl transcript: ENST00000399920
  gene symbol: TAPT1
  hgvsc: ENST00000399920.3:c.513+35A>T
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000305198
  ensembl transcript: ENST00000304584
  gene symbol: TAPT1
  hgvsc: ENST00000304584.8:c.190-142A>T
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000423359
  ensembl transcript: ENST00000513782
  gene symbol: TAPT1
  hgvsc: ENST00000513782.1:c.224-142A>T
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000422652
  ensembl transcript: ENST00000505603
  gene symbol: TAPT1
  hgvsc: ENST00000505603.1:c.*361+35A>T
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000504281
  gene symbol: TAPT1
  hgvsc: ENST00000504281.1:n.69A>T
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000385347
  ensembl transcript: ENST00000405303
  gene symbol: TAPT1
  hgvsc: ENST00000405303.2:c.846+35A>T
  variant of: http://identifiers.org/hgnc/26887
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 635
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3524
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3521
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 5523
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 511
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23007
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1111
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9341
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 738
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 723
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10111
  bin: 2.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1973
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2183
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1677
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 156
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3300
  bin: 9.75e1
  variant carriers: 15
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 412
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 745
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3983
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 221
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQ

4-16188371-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16188371
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 16188371
    reference: chr 4
allele count: 1
allele frequency: 8.838919530476594e-6
allele num: 113136
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000305198
  ensembl transcript: ENST00000304584
  gene symbol: TAPT1
  hgvsc: ENST00000304584.8:c.190-144T>C
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000382803
  ensembl transcript: ENST00000399920
  gene symbol: TAPT1
  hgvsc: ENST00000399920.3:c.513+33T>C
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000422652
  ensembl transcript: ENST00000505603
  gene symbol: TAPT1
  hgvsc: ENST00000505603.1:c.*361+33T>C
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000504281
  gene symbol: TAPT1
  hgvsc: ENST00000504281.1:n.67T>C
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000385347
  ensembl transcript: ENST00000405303
  gene symbol: TAPT1
  hgvsc: ENST00000405303.2:c.846+33T>C
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000423359
  ensembl transcript: ENST00000513782
  gene symbol: TAPT1
  hgvsc: ENST00000513782.1:c.224-144T>C
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000507425
  gene symbol: TAPT1
  hgvsc: ENST00000507425.1:n.322+33T>C
  variant of: http://identifiers.org/hgnc/26887
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1113
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 511
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8513
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10354
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 724
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24666
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3493
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3552
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4469
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 635
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 738
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3895
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1374
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2069
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3286
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 201
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 194
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3575
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 809
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
population: Other
reference allele: A
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: MQ

4-16188381-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16188381
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 16188381
    reference: chr 4
allele count: 1
allele frequency: 8.708070639869031e-6
allele num: 114836
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000423359
  ensembl transcript: ENST00000513782
  gene symbol: TAPT1
  hgvsc: ENST00000513782.1:c.224-154A>G
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000422652
  ensembl transcript: ENST00000505603
  gene symbol: TAPT1
  hgvsc: ENST00000505603.1:c.*361+23A>G
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000507425
  gene symbol: TAPT1
  hgvsc: ENST00000507425.1:n.322+23A>G
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000305198
  ensembl transcript: ENST00000304584
  gene symbol: TAPT1
  hgvsc: ENST00000304584.8:c.190-154A>G
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000385347
  ensembl transcript: ENST00000405303
  gene symbol: TAPT1
  hgvsc: ENST00000405303.2:c.846+23A>G
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000382803
  ensembl transcript: ENST00000399920
  gene symbol: TAPT1
  hgvsc: ENST00000399920.3:c.513+23A>G
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000504281
  gene symbol: TAPT1
  hgvsc: ENST00000504281.1:n.57A>G
  variant of: http://identifiers.org/hgnc/26887
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 511
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1677
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 724
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 738
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4635
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30711
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2809
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11589
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3698
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 635
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1118
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 198
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1331
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 430
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 232
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3158
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1513
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
reference allele: T
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: DP
site quality: BaseQRankSum

4-16188382-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16188382
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 16188382
    reference: chr 4
allele count: 494
allele frequency: 4.295353366722315e-3
allele num: 115008
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000504281
  gene symbol: TAPT1
  hgvsc: ENST00000504281.1:n.56C>T
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000422652
  ensembl transcript: ENST00000505603
  gene symbol: TAPT1
  hgvsc: ENST00000505603.1:c.*361+22C>T
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000305198
  ensembl transcript: ENST00000304584
  gene symbol: TAPT1
  hgvsc: ENST00000304584.8:c.190-155C>T
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000423359
  ensembl transcript: ENST00000513782
  gene symbol: TAPT1
  hgvsc: ENST00000513782.1:c.224-155C>T
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000385347
  ensembl transcript: ENST00000405303
  gene symbol: TAPT1
  hgvsc: ENST00000405303.2:c.846+22C>T
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000382803
  ensembl transcript: ENST00000399920
  gene symbol: TAPT1
  hgvsc: ENST00000399920.3:c.513+22C>T
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000507425
  gene symbol: TAPT1
  hgvsc: ENST00000507425.1:n.322+22C>T
  variant of: http://identifiers.org/hgnc/26887
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2694
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 760
  bin: 9.75e1
  variant carriers: 48
genotype depth: GenotypeDepth
  all individuals: 3762
  bin: 3.25e1
  variant carriers: 59
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 5.75e1
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 11708
  bin: 2.75e1
  variant carriers: 50
genotype depth: GenotypeDepth
  all individuals: 755
  bin: 4.25e1
  variant carriers: 41
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 6.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 5.25e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 30922
  bin: 2.25e1
  variant carriers: 47
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4309
  bin: 1.25e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 1148
  bin: 3.75e1
  variant carriers: 50
genotype depth: GenotypeDepth
  all individuals: 678
  bin: 4.75e1
  variant carriers: 49
genotype depth: GenotypeDepth
  all individuals: 1557
  bin: 1.75e1
  variant carriers: 40
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 9.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 6.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 8.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 7.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 305
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 508
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3025
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40487
  bin: 6.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 130
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1253
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 685
  bin: 7.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 255
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 377
  bin: 8.25e1
  variant carriers: 1
num of homozygotes: 9
population: European (Non-Finnish)
population: South Asian
population: African
population: European (Finnish)
population: Other
population: East Asian
population: Latino
reference allele: G
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: QD

4-16188387-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16188387
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 16188387
    reference: chr 4
allele count: 1
allele frequency: 8.621878879845495e-6
allele num: 115984
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000507425
  gene symbol: TAPT1
  hgvsc: ENST00000507425.1:n.322+17T>C
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000504281
  gene symbol: TAPT1
  hgvsc: ENST00000504281.1:n.51T>C
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000423359
  ensembl transcript: ENST00000513782
  gene symbol: TAPT1
  hgvsc: ENST00000513782.1:c.224-160T>C
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000385347
  ensembl transcript: ENST00000405303
  gene symbol: TAPT1
  hgvsc: ENST00000405303.2:c.846+17T>C
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000305198
  ensembl transcript: ENST00000304584
  gene symbol: TAPT1
  hgvsc: ENST00000304584.8:c.190-160T>C
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000422652
  ensembl transcript: ENST00000505603
  gene symbol: TAPT1
  hgvsc: ENST00000505603.1:c.*361+17T>C
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000382803
  ensembl transcript: ENST00000399920
  gene symbol: TAPT1
  hgvsc: ENST00000399920.3:c.513+17T>C
  variant of: http://identifiers.org/hgnc/26887
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12393
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3029
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 715
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1123
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3874
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32541
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2275
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 724
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1056
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2546
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1382
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 934
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 919
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 495
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 261
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 186
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3220
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
population: South Asian
population: Other
reference allele: A
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: QD

4-16188414-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16188414
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 16188414
    reference: chr 4
allele count: 1
allele frequency: 8.379981899239097e-6
allele num: 119332
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000385347
  ensembl transcript: ENST00000405303
  gene symbol: TAPT1
  hgvsc: ENST00000405303.2:c.836T>C
  hgvsp: ENSP00000385347.2:p.Met279Thr
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000422652
  ensembl transcript: ENST00000505603
  gene symbol: TAPT1
  hgvsc: ENST00000505603.1:c.*351T>C
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000382803
  ensembl transcript: ENST00000399920
  gene symbol: TAPT1
  hgvsc: ENST00000399920.3:c.503T>C
  hgvsp: ENSP00000382803.3:p.Met168Thr
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000423359
  ensembl transcript: ENST00000513782
  gene symbol: TAPT1
  hgvsc: ENST00000513782.1:c.224-187T>C
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000513359
  gene symbol: TAPT1
  hgvsc: ENST00000513359.1:n.739T>C
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000508888
  gene symbol: TAPT1
  hgvsc: ENST00000508888.1:n.827T>C
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000305198
  ensembl transcript: ENST00000304584
  gene symbol: TAPT1
  hgvsc: ENST00000304584.8:c.190-187T>C
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000504281
  gene symbol: TAPT1
  hgvsc: ENST00000504281.1:n.24T>C
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000507425
  gene symbol: TAPT1
  hgvsc: ENST00000507425.1:n.312T>C
  variant of: http://identifiers.org/hgnc/26887
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 715
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 724
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35920
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 668
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4081
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13914
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1128
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48302
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 833
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Met279Thr
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
population: Other
reference allele: A
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: MQRankSum

4-16188419-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16188419
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 16188419
    reference: chr 4
allele count: 4
allele frequency: 3.3463842318375e-5
allele num: 119532
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000382803
  ensembl transcript: ENST00000399920
  gene symbol: TAPT1
  hgvsc: ENST00000399920.3:c.498C>T
  hgvsp: ENST00000399920.3:c.498C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000513359
  gene symbol: TAPT1
  hgvsc: ENST00000513359.1:n.734C>T
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000385347
  ensembl transcript: ENST00000405303
  gene symbol: TAPT1
  hgvsc: ENST00000405303.2:c.831C>T
  hgvsp: ENST00000405303.2:c.831C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000507425
  gene symbol: TAPT1
  hgvsc: ENST00000507425.1:n.307C>T
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000423359
  ensembl transcript: ENST00000513782
  gene symbol: TAPT1
  hgvsc: ENST00000513782.1:c.224-192C>T
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000504281
  gene symbol: TAPT1
  hgvsc: ENST00000504281.1:n.19C>T
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000422652
  ensembl transcript: ENST00000505603
  gene symbol: TAPT1
  hgvsc: ENST00000505603.1:c.*346C>T
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000508888
  gene symbol: TAPT1
  hgvsc: ENST00000508888.1:n.822C>T
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000305198
  ensembl transcript: ENST00000304584
  gene symbol: TAPT1
  hgvsc: ENST00000304584.8:c.190-192C>T
  variant of: http://identifiers.org/hgnc/26887
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 725
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36015
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14030
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 715
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4100
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1132
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 392
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Ile277Ile
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: QD

4-16188424-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16188424
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 16188424
    reference: chr 4
allele count: 1
allele frequency: 8.356732183446986e-6
allele num: 119664
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000422652
  ensembl transcript: ENST00000505603
  gene symbol: TAPT1
  hgvsc: ENST00000505603.1:c.*341A>G
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000385347
  ensembl transcript: ENST00000405303
  gene symbol: TAPT1
  hgvsc: ENST00000405303.2:c.826A>G
  hgvsp: ENSP00000385347.2:p.Thr276Ala
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000504281
  gene symbol: TAPT1
  hgvsc: ENST00000504281.1:n.14A>G
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000382803
  ensembl transcript: ENST00000399920
  gene symbol: TAPT1
  hgvsc: ENST00000399920.3:c.493A>G
  hgvsp: ENSP00000382803.3:p.Thr165Ala
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000513359
  gene symbol: TAPT1
  hgvsc: ENST00000513359.1:n.729A>G
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000508888
  gene symbol: TAPT1
  hgvsc: ENST00000508888.1:n.817A>G
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000305198
  ensembl transcript: ENST00000304584
  gene symbol: TAPT1
  hgvsc: ENST00000304584.8:c.190-197A>G
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000507425
  gene symbol: TAPT1
  hgvsc: ENST00000507425.1:n.302A>G
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000423359
  ensembl transcript: ENST00000513782
  gene symbol: TAPT1
  hgvsc: ENST00000513782.1:c.224-197A>G
  variant of: http://identifiers.org/hgnc/26887
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4102
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36044
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14136
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 724
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1131
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 715
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 584
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48682
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Thr276Ala
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Latino
population: East Asian
population: European (Finnish)
population: African
population: Other
reference allele: T
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: DP

4-16188435-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16188435
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 16188435
    reference: chr 4
allele count: 3
allele frequency: 2.502920073418989e-5
allele num: 119860
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000423359
  ensembl transcript: ENST00000513782
  gene symbol: TAPT1
  hgvsc: ENST00000513782.1:c.224-208A>G
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000385347
  ensembl transcript: ENST00000405303
  gene symbol: TAPT1
  hgvsc: ENST00000405303.2:c.815A>G
  hgvsp: ENSP00000385347.2:p.Lys272Arg
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000504281
  gene symbol: TAPT1
  hgvsc: ENST00000504281.1:n.3A>G
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000513359
  gene symbol: TAPT1
  hgvsc: ENST00000513359.1:n.718A>G
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000305198
  ensembl transcript: ENST00000304584
  gene symbol: TAPT1
  hgvsc: ENST00000304584.8:c.190-208A>G
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000422652
  ensembl transcript: ENST00000505603
  gene symbol: TAPT1
  hgvsc: ENST00000505603.1:c.*330A>G
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000507425
  gene symbol: TAPT1
  hgvsc: ENST00000507425.1:n.291A>G
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000382803
  ensembl transcript: ENST00000399920
  gene symbol: TAPT1
  hgvsc: ENST00000399920.3:c.482A>G
  hgvsp: ENSP00000382803.3:p.Lys161Arg
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000508888
  gene symbol: TAPT1
  hgvsc: ENST00000508888.1:n.806A>G
  variant of: http://identifiers.org/hgnc/26887
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14260
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4118
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36122
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 715
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 724
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1130
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 849
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48901
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Lys272Arg
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
population: Other
reference allele: T
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ

4-16188438-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16188438
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 16188438
    reference: chr 4
allele count: 1
allele frequency: 8.340700952508049e-6
allele num: 119894
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000385347
  ensembl transcript: ENST00000405303
  gene symbol: TAPT1
  hgvsc: ENST00000405303.2:c.812A>G
  hgvsp: ENSP00000385347.2:p.Asn271Ser
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000508888
  gene symbol: TAPT1
  hgvsc: ENST00000508888.1:n.803A>G
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000423359
  ensembl transcript: ENST00000513782
  gene symbol: TAPT1
  hgvsc: ENST00000513782.1:c.224-211A>G
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000507425
  gene symbol: TAPT1
  hgvsc: ENST00000507425.1:n.288A>G
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000513359
  gene symbol: TAPT1
  hgvsc: ENST00000513359.1:n.715A>G
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000382803
  ensembl transcript: ENST00000399920
  gene symbol: TAPT1
  hgvsc: ENST00000399920.3:c.479A>G
  hgvsp: ENSP00000382803.3:p.Asn160Ser
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000305198
  ensembl transcript: ENST00000304584
  gene symbol: TAPT1
  hgvsc: ENST00000304584.8:c.190-211A>G
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000422652
  ensembl transcript: ENST00000505603
  gene symbol: TAPT1
  hgvsc: ENST00000505603.1:c.*327A>G
  variant of: http://identifiers.org/hgnc/26887
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14296
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36106
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4126
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 716
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 724
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1130
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48849
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 747
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 188
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Asn271Ser
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
population: Other
population: South Asian
reference allele: T
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ

4-16188453-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16188453
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 16188453
    reference: chr 4
allele count: 1
allele frequency: 8.339588024351597e-6
allele num: 119910
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000382803
  ensembl transcript: ENST00000399920
  gene symbol: TAPT1
  hgvsc: ENST00000399920.3:c.464C>G
  hgvsp: ENSP00000382803.3:p.Ala155Gly
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000385347
  ensembl transcript: ENST00000405303
  gene symbol: TAPT1
  hgvsc: ENST00000405303.2:c.797C>G
  hgvsp: ENSP00000385347.2:p.Ala266Gly
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000423359
  ensembl transcript: ENST00000513782
  gene symbol: TAPT1
  hgvsc: ENST00000513782.1:c.224-226C>G
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000508888
  gene symbol: TAPT1
  hgvsc: ENST00000508888.1:n.788C>G
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000422652
  ensembl transcript: ENST00000505603
  gene symbol: TAPT1
  hgvsc: ENST00000505603.1:c.*312C>G
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000305198
  ensembl transcript: ENST00000304584
  gene symbol: TAPT1
  hgvsc: ENST00000304584.8:c.190-226C>G
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000513359
  gene symbol: TAPT1
  hgvsc: ENST00000513359.1:n.700C>G
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000507425
  gene symbol: TAPT1
  hgvsc: ENST00000507425.1:n.273C>G
  variant of: http://identifiers.org/hgnc/26887
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 725
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36032
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1130
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 715
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4123
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14374
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 845
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4943
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 259
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Ala266Gly
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: East Asian
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum

4-16188458-AT-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16188458
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 16188457
    reference: chr 4
allele count: 1
allele frequency: 8.342370901810295e-6
allele num: 119870
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000385347
  ensembl transcript: ENST00000405303
  gene symbol: TAPT1
  hgvsc: ENST00000405303.2:c.791delA
  hgvsp: ENSP00000385347.2:p.Asn264MetfsTer2
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000507425
  gene symbol: TAPT1
  hgvsc: ENST00000507425.1:n.267delA
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000305198
  ensembl transcript: ENST00000304584
  gene symbol: TAPT1
  hgvsc: ENST00000304584.8:c.190-232delA
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000423359
  ensembl transcript: ENST00000513782
  gene symbol: TAPT1
  hgvsc: ENST00000513782.1:c.224-232delA
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000508888
  gene symbol: TAPT1
  hgvsc: ENST00000508888.1:n.782delA
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000422652
  ensembl transcript: ENST00000505603
  gene symbol: TAPT1
  hgvsc: ENST00000505603.1:c.*306delA
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000513359
  gene symbol: TAPT1
  hgvsc: ENST00000513359.1:n.694delA
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000382803
  ensembl transcript: ENST00000399920
  gene symbol: TAPT1
  hgvsc: ENST00000399920.3:c.458delA
  hgvsp: ENSP00000382803.3:p.Asn153MetfsTer2
  variant of: http://identifiers.org/hgnc/26887
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 35951
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4122
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 725
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14409
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1130
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 715
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 842
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48917
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 259
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 560
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Asn264MetfsTer2
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: AT
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff

4-16188461-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16188461
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 16188461
    reference: chr 4
allele count: 1
allele frequency: 8.348081610845828e-6
allele num: 119788
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000305198
  ensembl transcript: ENST00000304584
  gene symbol: TAPT1
  hgvsc: ENST00000304584.8:c.190-234C>A
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000385347
  ensembl transcript: ENST00000405303
  gene symbol: TAPT1
  hgvsc: ENST00000405303.2:c.789C>A
  hgvsp: ENST00000405303.2:c.789C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000507425
  gene symbol: TAPT1
  hgvsc: ENST00000507425.1:n.265C>A
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000508888
  gene symbol: TAPT1
  hgvsc: ENST00000508888.1:n.780C>A
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000513359
  gene symbol: TAPT1
  hgvsc: ENST00000513359.1:n.692C>A
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000382803
  ensembl transcript: ENST00000399920
  gene symbol: TAPT1
  hgvsc: ENST00000399920.3:c.456C>A
  hgvsp: ENST00000399920.3:c.456C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000423359
  ensembl transcript: ENST00000513782
  gene symbol: TAPT1
  hgvsc: ENST00000513782.1:c.224-234C>A
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000422652
  ensembl transcript: ENST00000505603
  gene symbol: TAPT1
  hgvsc: ENST00000505603.1:c.*304C>A
  variant of: http://identifiers.org/hgnc/26887
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 727
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1131
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4130
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35845
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14418
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 714
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4932
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48784
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3220
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Leu263Leu
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: MQ
site quality: ClippingRankSum

4-16188469-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16188469
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 16188469
    reference: chr 4
allele count: 2
allele frequency: 1.671541997492687e-5
allele num: 119650
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000305198
  ensembl transcript: ENST00000304584
  gene symbol: TAPT1
  hgvsc: ENST00000304584.8:c.190-242A>G
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000507425
  gene symbol: TAPT1
  hgvsc: ENST00000507425.1:n.257A>G
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000513359
  gene symbol: TAPT1
  hgvsc: ENST00000513359.1:n.684A>G
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000422652
  ensembl transcript: ENST00000505603
  gene symbol: TAPT1
  hgvsc: ENST00000505603.1:c.*296A>G
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000385347
  ensembl transcript: ENST00000405303
  gene symbol: TAPT1
  hgvsc: ENST00000405303.2:c.781A>G
  hgvsp: ENSP00000385347.2:p.Thr261Ala
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000382803
  ensembl transcript: ENST00000399920
  gene symbol: TAPT1
  hgvsc: ENST00000399920.3:c.448A>G
  hgvsp: ENSP00000382803.3:p.Thr150Ala
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000423359
  ensembl transcript: ENST00000513782
  gene symbol: TAPT1
  hgvsc: ENST00000513782.1:c.224-242A>G
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000508888
  gene symbol: TAPT1
  hgvsc: ENST00000508888.1:n.772A>G
  variant of: http://identifiers.org/hgnc/26887
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 724
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35691
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4132
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 714
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1133
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14407
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 829
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Thr261Ala
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: African
population: Latino
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: QD

4-16188479-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16188479
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 16188479
    reference: chr 4
allele count: 1
allele frequency: 8.381948635418762e-6
allele num: 119304
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000382803
  ensembl transcript: ENST00000399920
  gene symbol: TAPT1
  hgvsc: ENST00000399920.3:c.438G>A
  hgvsp: ENSP00000382803.3:p.Met146Ile
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000385347
  ensembl transcript: ENST00000405303
  gene symbol: TAPT1
  hgvsc: ENST00000405303.2:c.771G>A
  hgvsp: ENSP00000385347.2:p.Met257Ile
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000507425
  gene symbol: TAPT1
  hgvsc: ENST00000507425.1:n.247G>A
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000513359
  gene symbol: TAPT1
  hgvsc: ENST00000513359.1:n.674G>A
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000423359
  ensembl transcript: ENST00000513782
  gene symbol: TAPT1
  hgvsc: ENST00000513782.1:c.224-252G>A
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000422652
  ensembl transcript: ENST00000505603
  gene symbol: TAPT1
  hgvsc: ENST00000505603.1:c.*286G>A
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000508888
  gene symbol: TAPT1
  hgvsc: ENST00000508888.1:n.762G>A
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000305198
  ensembl transcript: ENST00000304584
  gene symbol: TAPT1
  hgvsc: ENST00000304584.8:c.190-252G>A
  variant of: http://identifiers.org/hgnc/26887
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1137
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 726
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35231
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 679
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4138
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 715
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14413
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4880
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 381
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 185
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 825
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Met257Ile
num of homozygotes: 0
population: Other
population: East Asian
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
reference allele: C
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: DP

4-16188483-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16188483
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 16188483
    reference: chr 4
allele count: 2
allele frequency: 1.679091947075022e-5
allele num: 119112
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000508888
  gene symbol: TAPT1
  hgvsc: ENST00000508888.1:n.758T>C
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000423359
  ensembl transcript: ENST00000513782
  gene symbol: TAPT1
  hgvsc: ENST00000513782.1:c.224-256T>C
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000385347
  ensembl transcript: ENST00000405303
  gene symbol: TAPT1
  hgvsc: ENST00000405303.2:c.767T>C
  hgvsp: ENSP00000385347.2:p.Ile256Thr
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000422652
  ensembl transcript: ENST00000505603
  gene symbol: TAPT1
  hgvsc: ENST00000505603.1:c.*282T>C
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000305198
  ensembl transcript: ENST00000304584
  gene symbol: TAPT1
  hgvsc: ENST00000304584.8:c.190-256T>C
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000382803
  ensembl transcript: ENST00000399920
  gene symbol: TAPT1
  hgvsc: ENST00000399920.3:c.434T>C
  hgvsp: ENSP00000382803.3:p.Ile145Thr
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000513359
  gene symbol: TAPT1
  hgvsc: ENST00000513359.1:n.670T>C
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000507425
  gene symbol: TAPT1
  hgvsc: ENST00000507425.1:n.243T>C
  variant of: http://identifiers.org/hgnc/26887
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14411
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 727
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35013
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 702
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 771
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4128
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1133
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 714
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 259
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 124
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4862
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Ile256Thr
num of homozygotes: 0
population: European (Finnish)
population: Other
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum

4-16188484-T-TAA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16188484
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 16188486
    reference: chr 4
allele count: 1
allele frequency: 8.399832003359932e-6
allele num: 119050
alternate allele: TAA
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000507425
  gene symbol: TAPT1
  hgvsc: ENST00000507425.1:n.240_241dupTT
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000513359
  gene symbol: TAPT1
  hgvsc: ENST00000513359.1:n.667_668dupTT
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000422652
  ensembl transcript: ENST00000505603
  gene symbol: TAPT1
  hgvsc: ENST00000505603.1:c.*279_*280dupTT
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000385347
  ensembl transcript: ENST00000405303
  gene symbol: TAPT1
  hgvsc: ENST00000405303.2:c.764_765dupTT
  hgvsp: ENSP00000385347.2:p.Ile256LeufsTer2
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000305198
  ensembl transcript: ENST00000304584
  gene symbol: TAPT1
  hgvsc: ENST00000304584.8:c.190-259_190-258dupTT
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000423359
  ensembl transcript: ENST00000513782
  gene symbol: TAPT1
  hgvsc: ENST00000513782.1:c.224-259_224-258dupTT
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000382803
  ensembl transcript: ENST00000399920
  gene symbol: TAPT1
  hgvsc: ENST00000399920.3:c.431_432dupTT
  hgvsp: ENSP00000382803.3:p.Ile145LeufsTer2
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000508888
  gene symbol: TAPT1
  hgvsc: ENST00000508888.1:n.755_756dupTT
  variant of: http://identifiers.org/hgnc/26887
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34950
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 800
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14401
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1136
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4133
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 734
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 727
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 714
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3219
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Ile256LeufsTer2
num of homozygotes: 0
population: South Asian
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
reference allele: T
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP

4-16188487-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16188487
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 16188487
    reference: chr 4
allele count: 90
allele frequency: 7.573590049985695e-4
allele num: 118834
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000385347
  ensembl transcript: ENST00000405303
  gene symbol: TAPT1
  hgvsc: ENST00000405303.2:c.763C>T
  hgvsp: ENSP00000385347.2:p.Leu255Phe
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000513359
  gene symbol: TAPT1
  hgvsc: ENST00000513359.1:n.666C>T
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000507425
  gene symbol: TAPT1
  hgvsc: ENST00000507425.1:n.239C>T
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000423359
  ensembl transcript: ENST00000513782
  gene symbol: TAPT1
  hgvsc: ENST00000513782.1:c.224-260C>T
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000422652
  ensembl transcript: ENST00000505603
  gene symbol: TAPT1
  hgvsc: ENST00000505603.1:c.*278C>T
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000508888
  gene symbol: TAPT1
  hgvsc: ENST00000508888.1:n.754C>T
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000382803
  ensembl transcript: ENST00000399920
  gene symbol: TAPT1
  hgvsc: ENST00000399920.3:c.430C>T
  hgvsp: ENSP00000382803.3:p.Leu144Phe
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000305198
  ensembl transcript: ENST00000304584
  gene symbol: TAPT1
  hgvsc: ENST00000304584.8:c.190-260C>T
  variant of: http://identifiers.org/hgnc/26887
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 14372
  bin: 2.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34630
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 5.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1146
  bin: 3.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 899
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 904
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 733
  bin: 4.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 651
  bin: 4.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 4135
  bin: 3.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 5.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 715
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 6.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 6.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 814
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 163
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 720
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 380
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Leu255Phe
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
population: East Asian
population: European (Finnish)
population: Latino
reference allele: G
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ

4-16188490-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16188490
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 16188490
    reference: chr 4
allele count: 1
allele frequency: 8.434263351438885e-6
allele num: 118564
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000422652
  ensembl transcript: ENST00000505603
  gene symbol: TAPT1
  hgvsc: ENST00000505603.1:c.*275A>G
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000385347
  ensembl transcript: ENST00000405303
  gene symbol: TAPT1
  hgvsc: ENST00000405303.2:c.760A>G
  hgvsp: ENSP00000385347.2:p.Ile254Val
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000513359
  gene symbol: TAPT1
  hgvsc: ENST00000513359.1:n.663A>G
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000508888
  gene symbol: TAPT1
  hgvsc: ENST00000508888.1:n.751A>G
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000507425
  gene symbol: TAPT1
  hgvsc: ENST00000507425.1:n.236A>G
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000305198
  ensembl transcript: ENST00000304584
  gene symbol: TAPT1
  hgvsc: ENST00000304584.8:c.190-263A>G
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000382803
  ensembl transcript: ENST00000399920
  gene symbol: TAPT1
  hgvsc: ENST00000399920.3:c.427A>G
  hgvsp: ENSP00000382803.3:p.Ile143Val
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000423359
  ensembl transcript: ENST00000513782
  gene symbol: TAPT1
  hgvsc: ENST00000513782.1:c.224-263A>G
  variant of: http://identifiers.org/hgnc/26887
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34356
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1017
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1050
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4150
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14400
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 724
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1137
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 713
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 813
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 174
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47361
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3217
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1780
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Ile254Val
num of homozygotes: 0
population: South Asian
population: Latino
population: East Asian
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: T
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum

4-16188506-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16188506
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 16188506
    reference: chr 4
allele count: 1
allele frequency: 8.64737725047993e-6
allele num: 115642
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000305198
  ensembl transcript: ENST00000304584
  gene symbol: TAPT1
  hgvsc: ENST00000304584.8:c.190-279A>G
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000382803
  ensembl transcript: ENST00000399920
  gene symbol: TAPT1
  hgvsc: ENST00000399920.3:c.416-5A>G
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000385347
  ensembl transcript: ENST00000405303
  gene symbol: TAPT1
  hgvsc: ENST00000405303.2:c.749-5A>G
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000423359
  ensembl transcript: ENST00000513782
  gene symbol: TAPT1
  hgvsc: ENST00000513782.1:c.224-279A>G
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000508888
  gene symbol: TAPT1
  hgvsc: ENST00000508888.1:n.740-5A>G
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000507425
  gene symbol: TAPT1
  hgvsc: ENST00000507425.1:n.225-5A>G
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000513359
  gene symbol: TAPT1
  hgvsc: ENST00000513359.1:n.652-5A>G
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000422652
  ensembl transcript: ENST00000505603
  gene symbol: TAPT1
  hgvsc: ENST00000505603.1:c.*264-5A>G
  variant of: http://identifiers.org/hgnc/26887
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 713
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13971
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2391
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29720
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1141
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 725
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4197
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4133
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 669
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 289
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4608
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 367
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42552
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 7.5e0
  variant carriers: 0
hgvs: c.749-5A>G
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
population: Other
reference allele: T
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum

4-16188509-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16188509
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 16188509
    reference: chr 4
allele count: 1
allele frequency: 8.785030308354564e-6
allele num: 113830
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000423359
  ensembl transcript: ENST00000513782
  gene symbol: TAPT1
  hgvsc: ENST00000513782.1:c.224-282T>C
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000508888
  gene symbol: TAPT1
  hgvsc: ENST00000508888.1:n.740-8T>C
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000305198
  ensembl transcript: ENST00000304584
  gene symbol: TAPT1
  hgvsc: ENST00000304584.8:c.190-282T>C
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000422652
  ensembl transcript: ENST00000505603
  gene symbol: TAPT1
  hgvsc: ENST00000505603.1:c.*264-8T>C
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000382803
  ensembl transcript: ENST00000399920
  gene symbol: TAPT1
  hgvsc: ENST00000399920.3:c.416-8T>C
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000507425
  gene symbol: TAPT1
  hgvsc: ENST00000507425.1:n.225-8T>C
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000385347
  ensembl transcript: ENST00000405303
  gene symbol: TAPT1
  hgvsc: ENST00000405303.2:c.749-8T>C
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000513359
  gene symbol: TAPT1
  hgvsc: ENST00000513359.1:n.652-8T>C
  variant of: http://identifiers.org/hgnc/26887
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1174
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3186
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 713
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4146
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 724
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26057
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13390
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7048
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1172
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1224
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4217
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 610
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 183
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 488
  bin: 3.75e1
  variant carriers: 0
hgvs: c.749-8T>C
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: African
reference allele: A
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum

4-16188510-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16188510
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 16188510
    reference: chr 4
allele count: 1
allele frequency: 8.784567272216171e-6
allele num: 113836
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000422652
  ensembl transcript: ENST00000505603
  gene symbol: TAPT1
  hgvsc: ENST00000505603.1:c.*264-9T>A
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000385347
  ensembl transcript: ENST00000405303
  gene symbol: TAPT1
  hgvsc: ENST00000405303.2:c.749-9T>A
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000305198
  ensembl transcript: ENST00000304584
  gene symbol: TAPT1
  hgvsc: ENST00000304584.8:c.190-283T>A
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000513359
  gene symbol: TAPT1
  hgvsc: ENST00000513359.1:n.652-9T>A
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000382803
  ensembl transcript: ENST00000399920
  gene symbol: TAPT1
  hgvsc: ENST00000399920.3:c.416-9T>A
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000423359
  ensembl transcript: ENST00000513782
  gene symbol: TAPT1
  hgvsc: ENST00000513782.1:c.224-283T>A
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000508888
  gene symbol: TAPT1
  hgvsc: ENST00000508888.1:n.740-9T>A
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000507425
  gene symbol: TAPT1
  hgvsc: ENST00000507425.1:n.225-9T>A
  variant of: http://identifiers.org/hgnc/26887
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 723
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13408
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3195
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 713
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7049
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1173
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1144
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26075
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4130
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 214
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 138
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 382
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3215
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 38220
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
population: European (Finnish)
population: South Asian
reference allele: A
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: QD

4-16188518-G-GA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16188518
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 16188519
    reference: chr 4
allele count: 1
allele frequency: 8.974082848732859e-6
allele num: 111432
alternate allele: GA
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000382803
  ensembl transcript: ENST00000399920
  gene symbol: TAPT1
  hgvsc: ENST00000399920.3:c.416-18dupT
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000385347
  ensembl transcript: ENST00000405303
  gene symbol: TAPT1
  hgvsc: ENST00000405303.2:c.749-18dupT
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000305198
  ensembl transcript: ENST00000304584
  gene symbol: TAPT1
  hgvsc: ENST00000304584.8:c.190-292dupT
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000508888
  gene symbol: TAPT1
  hgvsc: ENST00000508888.1:n.740-18dupT
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000513359
  gene symbol: TAPT1
  hgvsc: ENST00000513359.1:n.652-18dupT
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000423359
  ensembl transcript: ENST00000513782
  gene symbol: TAPT1
  hgvsc: ENST00000513782.1:c.224-292dupT
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000507425
  gene symbol: TAPT1
  hgvsc: ENST00000507425.1:n.225-18dupT
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000422652
  ensembl transcript: ENST00000505603
  gene symbol: TAPT1
  hgvsc: ENST00000505603.1:c.*264-18dupT
  variant of: http://identifiers.org/hgnc/26887
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2218
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3845
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11737
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4175
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1120
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20768
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 713
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 726
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12169
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12342
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 357
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 208
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 368
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 198
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Other
reference allele: G
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: DP

4-16188524-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16188524
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 16188524
    reference: chr 4
allele count: 1
allele frequency: 9.107965826912217e-6
allele num: 109794
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000423359
  ensembl transcript: ENST00000513782
  gene symbol: TAPT1
  hgvsc: ENST00000513782.1:c.224-297T>A
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000385347
  ensembl transcript: ENST00000405303
  gene symbol: TAPT1
  hgvsc: ENST00000405303.2:c.749-23T>A
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000513359
  gene symbol: TAPT1
  hgvsc: ENST00000513359.1:n.652-23T>A
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000305198
  ensembl transcript: ENST00000304584
  gene symbol: TAPT1
  hgvsc: ENST00000304584.8:c.190-297T>A
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000507425
  gene symbol: TAPT1
  hgvsc: ENST00000507425.1:n.225-23T>A
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000508888
  gene symbol: TAPT1
  hgvsc: ENST00000508888.1:n.740-23T>A
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000422652
  ensembl transcript: ENST00000505603
  gene symbol: TAPT1
  hgvsc: ENST00000505603.1:c.*264-23T>A
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000382803
  ensembl transcript: ENST00000399920
  gene symbol: TAPT1
  hgvsc: ENST00000399920.3:c.416-23T>A
  variant of: http://identifiers.org/hgnc/26887
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 715
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1114
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14963
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4093
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4808
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16988
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10322
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 713
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3548
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 617
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3858
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16127
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 353
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 219
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 164
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 143
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3432
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Finnish)
population: Other
population: Latino
population: African
population: European (Non-Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum

4-16188530-AT-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16188530
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 16188529
    reference: chr 4
allele count: 1
allele frequency: 9.339858781335226e-6
allele num: 107068
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000422652
  ensembl transcript: ENST00000505603
  gene symbol: TAPT1
  hgvsc: ENST00000505603.1:c.*264-30delA
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000513359
  gene symbol: TAPT1
  hgvsc: ENST00000513359.1:n.652-30delA
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000423359
  ensembl transcript: ENST00000513782
  gene symbol: TAPT1
  hgvsc: ENST00000513782.1:c.224-304delA
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000305198
  ensembl transcript: ENST00000304584
  gene symbol: TAPT1
  hgvsc: ENST00000304584.8:c.190-304delA
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000385347
  ensembl transcript: ENST00000405303
  gene symbol: TAPT1
  hgvsc: ENST00000405303.2:c.749-30delA
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000508888
  gene symbol: TAPT1
  hgvsc: ENST00000508888.1:n.740-30delA
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000507425
  gene symbol: TAPT1
  hgvsc: ENST00000507425.1:n.225-30delA
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000382803
  ensembl transcript: ENST00000399920
  gene symbol: TAPT1
  hgvsc: ENST00000399920.3:c.416-30delA
  variant of: http://identifiers.org/hgnc/26887
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 22121
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2970
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7690
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 991
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5531
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7380
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1055
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8605
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 713
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 713
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 516
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18984
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 417
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 807
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3374
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5043
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 398
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: AT
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: QD

4-16188534-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16188534
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 16188534
    reference: chr 4
allele count: 2
allele frequency: 1.888467131229581e-5
allele num: 105906
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000508888
  gene symbol: TAPT1
  hgvsc: ENST00000508888.1:n.740-33C>A
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000385347
  ensembl transcript: ENST00000405303
  gene symbol: TAPT1
  hgvsc: ENST00000405303.2:c.749-33C>A
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000423359
  ensembl transcript: ENST00000513782
  gene symbol: TAPT1
  hgvsc: ENST00000513782.1:c.224-307C>A
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000513359
  gene symbol: TAPT1
  hgvsc: ENST00000513359.1:n.652-33C>A
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000422652
  ensembl transcript: ENST00000505603
  gene symbol: TAPT1
  hgvsc: ENST00000505603.1:c.*264-33C>A
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000305198
  ensembl transcript: ENST00000304584
  gene symbol: TAPT1
  hgvsc: ENST00000304584.8:c.190-307C>A
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000382803
  ensembl transcript: ENST00000399920
  gene symbol: TAPT1
  hgvsc: ENST00000399920.3:c.416-33C>A
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000507425
  gene symbol: TAPT1
  hgvsc: ENST00000507425.1:n.225-33C>A
  variant of: http://identifiers.org/hgnc/26887
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 22495
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5892
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6424
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1028
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6540
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1136
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 636
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 703
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10160
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2672
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 713
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5312
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 250
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3921
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 763
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 567
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 526
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12636
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
population: European (Finnish)
reference allele: G
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum

4-16188535-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16188535
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 16188535
    reference: chr 4
allele count: 1
allele frequency: 9.51782688976453e-6
allele num: 105066
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000507425
  gene symbol: TAPT1
  hgvsc: ENST00000507425.1:n.225-34G>C
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000508888
  gene symbol: TAPT1
  hgvsc: ENST00000508888.1:n.740-34G>C
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000422652
  ensembl transcript: ENST00000505603
  gene symbol: TAPT1
  hgvsc: ENST00000505603.1:c.*264-34G>C
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000513359
  gene symbol: TAPT1
  hgvsc: ENST00000513359.1:n.652-34G>C
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000423359
  ensembl transcript: ENST00000513782
  gene symbol: TAPT1
  hgvsc: ENST00000513782.1:c.224-308G>C
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000385347
  ensembl transcript: ENST00000405303
  gene symbol: TAPT1
  hgvsc: ENST00000405303.2:c.749-34G>C
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000382803
  ensembl transcript: ENST00000399920
  gene symbol: TAPT1
  hgvsc: ENST00000399920.3:c.416-34G>C
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000305198
  ensembl transcript: ENST00000304584
  gene symbol: TAPT1
  hgvsc: ENST00000304584.8:c.190-308G>C
  variant of: http://identifiers.org/hgnc/26887
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5858
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22536
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1202
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 631
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 698
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6139
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1003
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11156
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 713
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2541
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5918
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 203
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 253
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1712
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5456
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1127
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4255
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 482
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11336
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
reference allele: C
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff

4-16188535-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16188535
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 16188535
    reference: chr 4
allele count: 1
allele frequency: 9.51782688976453e-6
allele num: 105066
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000508888
  gene symbol: TAPT1
  hgvsc: ENST00000508888.1:n.740-34G>A
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000382803
  ensembl transcript: ENST00000399920
  gene symbol: TAPT1
  hgvsc: ENST00000399920.3:c.416-34G>A
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000513359
  gene symbol: TAPT1
  hgvsc: ENST00000513359.1:n.652-34G>A
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000385347
  ensembl transcript: ENST00000405303
  gene symbol: TAPT1
  hgvsc: ENST00000405303.2:c.749-34G>A
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000305198
  ensembl transcript: ENST00000304584
  gene symbol: TAPT1
  hgvsc: ENST00000304584.8:c.190-308G>A
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000423359
  ensembl transcript: ENST00000513782
  gene symbol: TAPT1
  hgvsc: ENST00000513782.1:c.224-308G>A
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000507425
  gene symbol: TAPT1
  hgvsc: ENST00000507425.1:n.225-34G>A
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000422652
  ensembl transcript: ENST00000505603
  gene symbol: TAPT1
  hgvsc: ENST00000505603.1:c.*264-34G>A
  variant of: http://identifiers.org/hgnc/26887
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1202
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5918
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6139
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 631
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 713
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11156
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1003
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2541
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 698
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5858
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22536
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 892
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 265
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 348
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 693
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 203
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 661
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1712
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2036
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD

4-16188542-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16188542
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 16188542
    reference: chr 4
allele count: 1
allele frequency: 1.022808632504858e-5
allele num: 97770
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000423359
  ensembl transcript: ENST00000513782
  gene symbol: TAPT1
  hgvsc: ENST00000513782.1:c.224-315T>C
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000513359
  gene symbol: TAPT1
  hgvsc: ENST00000513359.1:n.652-41T>C
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000507425
  gene symbol: TAPT1
  hgvsc: ENST00000507425.1:n.225-41T>C
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000422652
  ensembl transcript: ENST00000505603
  gene symbol: TAPT1
  hgvsc: ENST00000505603.1:c.*264-41T>C
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000382803
  ensembl transcript: ENST00000399920
  gene symbol: TAPT1
  hgvsc: ENST00000399920.3:c.416-41T>C
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000305198
  ensembl transcript: ENST00000304584
  gene symbol: TAPT1
  hgvsc: ENST00000304584.8:c.190-315T>C
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000508888
  gene symbol: TAPT1
  hgvsc: ENST00000508888.1:n.740-41T>C
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000385347
  ensembl transcript: ENST00000405303
  gene symbol: TAPT1
  hgvsc: ENST00000405303.2:c.749-41T>C
  variant of: http://identifiers.org/hgnc/26887
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9337
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 713
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1424
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20406
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1497
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14491
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2855
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 806
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5617
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 594
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 484
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2852
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1128
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 371
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6143
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 286
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 267
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2288
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1899
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: Other
population: East Asian
population: South Asian
population: African
population: European (Finnish)
reference allele: A
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP

4-16188546-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16188546
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 16188546
    reference: chr 4
allele count: 1
allele frequency: 1.067782855678469e-5
allele num: 93652
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000513359
  gene symbol: TAPT1
  hgvsc: ENST00000513359.1:n.652-45A>G
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000423359
  ensembl transcript: ENST00000513782
  gene symbol: TAPT1
  hgvsc: ENST00000513782.1:c.224-319A>G
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000305198
  ensembl transcript: ENST00000304584
  gene symbol: TAPT1
  hgvsc: ENST00000304584.8:c.190-319A>G
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000507425
  gene symbol: TAPT1
  hgvsc: ENST00000507425.1:n.225-45A>G
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000385347
  ensembl transcript: ENST00000405303
  gene symbol: TAPT1
  hgvsc: ENST00000405303.2:c.749-45A>G
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000422652
  ensembl transcript: ENST00000505603
  gene symbol: TAPT1
  hgvsc: ENST00000505603.1:c.*264-45A>G
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000382803
  ensembl transcript: ENST00000399920
  gene symbol: TAPT1
  hgvsc: ENST00000399920.3:c.416-45A>G
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000508888
  gene symbol: TAPT1
  hgvsc: ENST00000508888.1:n.740-45A>G
  variant of: http://identifiers.org/hgnc/26887
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1197
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10764
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13993
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6348
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1458
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2523
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19491
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 713
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 706
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 599
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3327
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3040
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2516
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5559
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 390
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8572
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3214
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 6325
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: Other
reference allele: T
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: DP

4-16188549-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16188549
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 16188549
    reference: chr 4
allele count: 1
allele frequency: 1.120573733751681e-5
allele num: 89240
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000508888
  gene symbol: TAPT1
  hgvsc: ENST00000508888.1:n.740-48G>A
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000423359
  ensembl transcript: ENST00000513782
  gene symbol: TAPT1
  hgvsc: ENST00000513782.1:c.224-322G>A
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000385347
  ensembl transcript: ENST00000405303
  gene symbol: TAPT1
  hgvsc: ENST00000405303.2:c.749-48G>A
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000382803
  ensembl transcript: ENST00000399920
  gene symbol: TAPT1
  hgvsc: ENST00000399920.3:c.416-48G>A
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000513359
  gene symbol: TAPT1
  hgvsc: ENST00000513359.1:n.652-48G>A
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000507425
  gene symbol: TAPT1
  hgvsc: ENST00000507425.1:n.225-48G>A
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000305198
  ensembl transcript: ENST00000304584
  gene symbol: TAPT1
  hgvsc: ENST00000304584.8:c.190-322G>A
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000422652
  ensembl transcript: ENST00000505603
  gene symbol: TAPT1
  hgvsc: ENST00000505603.1:c.*264-48G>A
  variant of: http://identifiers.org/hgnc/26887
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 684
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1080
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13579
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6540
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1493
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2514
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19112
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11560
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 713
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8499
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 309
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5936
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3214
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1939
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2731
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2997
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2545
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: European (Finnish)
population: African
reference allele: C
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP

4-16188550-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16188550
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 16188550
    reference: chr 4
allele count: 1
allele frequency: 1.116619768636384e-5
allele num: 89556
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000305198
  ensembl transcript: ENST00000304584
  gene symbol: TAPT1
  hgvsc: ENST00000304584.8:c.190-323A>G
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000513359
  gene symbol: TAPT1
  hgvsc: ENST00000513359.1:n.652-49A>G
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000507425
  gene symbol: TAPT1
  hgvsc: ENST00000507425.1:n.225-49A>G
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000508888
  gene symbol: TAPT1
  hgvsc: ENST00000508888.1:n.740-49A>G
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000423359
  ensembl transcript: ENST00000513782
  gene symbol: TAPT1
  hgvsc: ENST00000513782.1:c.224-323A>G
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000382803
  ensembl transcript: ENST00000399920
  gene symbol: TAPT1
  hgvsc: ENST00000399920.3:c.416-49A>G
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000385347
  ensembl transcript: ENST00000405303
  gene symbol: TAPT1
  hgvsc: ENST00000405303.2:c.749-49A>G
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000422652
  ensembl transcript: ENST00000505603
  gene symbol: TAPT1
  hgvsc: ENST00000505603.1:c.*264-49A>G
  variant of: http://identifiers.org/hgnc/26887
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6534
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 686
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19136
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11573
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1495
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1076
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2521
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13544
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 713
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6326
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 733
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8526
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 310
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3568
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 556
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2984
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5796
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
reference allele: T
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP

4-16189794-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16189794
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 16189794
    reference: chr 4
allele count: 1
allele frequency: 8.360225391676559e-6
allele num: 119614
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000507425
  gene symbol: TAPT1
  hgvsc: ENST00000507425.1:n.224+49A>G
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000513359
  gene symbol: TAPT1
  hgvsc: ENST00000513359.1:n.651+49A>G
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000508888
  gene symbol: TAPT1
  hgvsc: ENST00000508888.1:n.739+49A>G
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000385347
  ensembl transcript: ENST00000405303
  gene symbol: TAPT1
  hgvsc: ENST00000405303.2:c.748+49A>G
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000423359
  ensembl transcript: ENST00000513782
  gene symbol: TAPT1
  hgvsc: ENST00000513782.1:c.223+86A>G
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000382803
  ensembl transcript: ENST00000399920
  gene symbol: TAPT1
  hgvsc: ENST00000399920.3:c.415+49A>G
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000305198
  ensembl transcript: ENST00000304584
  gene symbol: TAPT1
  hgvsc: ENST00000304584.8:c.189+86A>G
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000422652
  ensembl transcript: ENST00000505603
  gene symbol: TAPT1
  hgvsc: ENST00000505603.1:c.*263+49A>G
  variant of: http://identifiers.org/hgnc/26887
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8995
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2107
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 495
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1547
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1001
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4431
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16961
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3004
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19487
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 701
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 687
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 612
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 466
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 430
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36749
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 374
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10492
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: African
reference allele: T
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ

4-16189795-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16189795
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 16189795
    reference: chr 4
allele count: 3
allele frequency: 2.507354907729339e-5
allele num: 119648
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000513359
  gene symbol: TAPT1
  hgvsc: ENST00000513359.1:n.651+48T>C
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000305198
  ensembl transcript: ENST00000304584
  gene symbol: TAPT1
  hgvsc: ENST00000304584.8:c.189+85T>C
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000422652
  ensembl transcript: ENST00000505603
  gene symbol: TAPT1
  hgvsc: ENST00000505603.1:c.*263+48T>C
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000385347
  ensembl transcript: ENST00000405303
  gene symbol: TAPT1
  hgvsc: ENST00000405303.2:c.748+48T>C
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000507425
  gene symbol: TAPT1
  hgvsc: ENST00000507425.1:n.224+48T>C
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000423359
  ensembl transcript: ENST00000513782
  gene symbol: TAPT1
  hgvsc: ENST00000513782.1:c.223+85T>C
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000382803
  ensembl transcript: ENST00000399920
  gene symbol: TAPT1
  hgvsc: ENST00000399920.3:c.415+48T>C
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000508888
  gene symbol: TAPT1
  hgvsc: ENST00000508888.1:n.739+48T>C
  variant of: http://identifiers.org/hgnc/26887
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3004
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19486
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1545
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1001
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16974
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1970
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 701
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8996
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4564
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 619
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 767
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 710
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 994
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Other
population: Latino
population: East Asian
population: European (Non-Finnish)
population: African
reference allele: A
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ

http://identifiers.org/exac.variant/4-16189803-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16189803
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 16189803
    reference: chr 4
allele count: 8
allele frequency: 6.686838629866765e-5
allele num: 119638
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000423359
  ensembl transcript: ENST00000513782
  gene symbol: TAPT1
  hgvsc: ENST00000513782.1:c.223+77G>T
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000385347
  ensembl transcript: ENST00000405303
  gene symbol: TAPT1
  hgvsc: ENST00000405303.2:c.748+40G>T
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000305198
  ensembl transcript: ENST00000304584
  gene symbol: TAPT1
  hgvsc: ENST00000304584.8:c.189+77G>T
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000422652
  ensembl transcript: ENST00000505603
  gene symbol: TAPT1
  hgvsc: ENST00000505603.1:c.*263+40G>T
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000382803
  ensembl transcript: ENST00000399920
  gene symbol: TAPT1
  hgvsc: ENST00000399920.3:c.415+40G>T
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000508888
  gene symbol: TAPT1
  hgvsc: ENST00000508888.1:n.739+40G>T
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000507425
  gene symbol: TAPT1
  hgvsc: ENST00000507425.1:n.224+40G>T
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000513359
  gene symbol: TAPT1
  hgvsc: ENST00000513359.1:n.651+40G>T
  variant of: http://identifiers.org/hgnc/26887
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5506
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19534
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 702
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 8998
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17134
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3004
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1371
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1017
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1000
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 587
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10569
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 352
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 615
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2130
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: East Asian
population: African
population: Latino
population: South Asian
reference allele: C
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: ReadPosRankSum

4-16189804-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16189804
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 16189804
    reference: chr 4
allele count: 1
allele frequency: 8.352125615969264e-6
allele num: 119730
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000382803
  ensembl transcript: ENST00000399920
  gene symbol: TAPT1
  hgvsc: ENST00000399920.3:c.415+39T>C
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000422652
  ensembl transcript: ENST00000505603
  gene symbol: TAPT1
  hgvsc: ENST00000505603.1:c.*263+39T>C
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000305198
  ensembl transcript: ENST00000304584
  gene symbol: TAPT1
  hgvsc: ENST00000304584.8:c.189+76T>C
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000423359
  ensembl transcript: ENST00000513782
  gene symbol: TAPT1
  hgvsc: ENST00000513782.1:c.223+76T>C
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000507425
  gene symbol: TAPT1
  hgvsc: ENST00000507425.1:n.224+39T>C
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000385347
  ensembl transcript: ENST00000405303
  gene symbol: TAPT1
  hgvsc: ENST00000405303.2:c.748+39T>C
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000508888
  gene symbol: TAPT1
  hgvsc: ENST00000508888.1:n.739+39T>C
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000513359
  gene symbol: TAPT1
  hgvsc: ENST00000513359.1:n.651+39T>C
  variant of: http://identifiers.org/hgnc/26887
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 889
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3004
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5664
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19534
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17156
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9000
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 698
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1000
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1331
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38327
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 340
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 337
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 564
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 471
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: Other
population: South Asian
population: African
population: European (Non-Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: QD

4-16189813-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16189813
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 16189813
    reference: chr 4
allele count: 4
allele frequency: 3.339344152808389e-5
allele num: 119784
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000305198
  ensembl transcript: ENST00000304584
  gene symbol: TAPT1
  hgvsc: ENST00000304584.8:c.189+67G>A
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000423359
  ensembl transcript: ENST00000513782
  gene symbol: TAPT1
  hgvsc: ENST00000513782.1:c.223+67G>A
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000382803
  ensembl transcript: ENST00000399920
  gene symbol: TAPT1
  hgvsc: ENST00000399920.3:c.415+30G>A
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000385347
  ensembl transcript: ENST00000405303
  gene symbol: TAPT1
  hgvsc: ENST00000405303.2:c.748+30G>A
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000507425
  gene symbol: TAPT1
  hgvsc: ENST00000507425.1:n.224+30G>A
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000513359
  gene symbol: TAPT1
  hgvsc: ENST00000513359.1:n.651+30G>A
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000508888
  gene symbol: TAPT1
  hgvsc: ENST00000508888.1:n.739+30G>A
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000422652
  ensembl transcript: ENST00000505603
  gene symbol: TAPT1
  hgvsc: ENST00000505603.1:c.*263+30G>A
  variant of: http://identifiers.org/hgnc/26887
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17359
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 880
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3004
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1000
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6341
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19618
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9006
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 701
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 2468
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 271
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 321
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 385
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38964
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 147
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: Latino
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ

4-16189814-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16189814
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 16189814
    reference: chr 4
allele count: 1
allele frequency: 8.340144451301897e-6
allele num: 119902
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000305198
  ensembl transcript: ENST00000304584
  gene symbol: TAPT1
  hgvsc: ENST00000304584.8:c.189+66C>T
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000422652
  ensembl transcript: ENST00000505603
  gene symbol: TAPT1
  hgvsc: ENST00000505603.1:c.*263+29C>T
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000507425
  gene symbol: TAPT1
  hgvsc: ENST00000507425.1:n.224+29C>T
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000513359
  gene symbol: TAPT1
  hgvsc: ENST00000513359.1:n.651+29C>T
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000385347
  ensembl transcript: ENST00000405303
  gene symbol: TAPT1
  hgvsc: ENST00000405303.2:c.748+29C>T
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000382803
  ensembl transcript: ENST00000399920
  gene symbol: TAPT1
  hgvsc: ENST00000399920.3:c.415+29C>T
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000423359
  ensembl transcript: ENST00000513782
  gene symbol: TAPT1
  hgvsc: ENST00000513782.1:c.223+66C>T
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000508888
  gene symbol: TAPT1
  hgvsc: ENST00000508888.1:n.739+29C>T
  variant of: http://identifiers.org/hgnc/26887
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9009
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1000
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3004
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 758
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6540
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19633
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17381
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 697
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10725
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39288
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 331
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 234
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2190
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: East Asian
reference allele: G
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ

4-16189815-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16189815
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 16189815
    reference: chr 4
allele count: 28
allele frequency: 2.335045700180132e-4
allele num: 119912
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000423359
  ensembl transcript: ENST00000513782
  gene symbol: TAPT1
  hgvsc: ENST00000513782.1:c.223+65C>G
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000508888
  gene symbol: TAPT1
  hgvsc: ENST00000508888.1:n.739+28C>G
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000305198
  ensembl transcript: ENST00000304584
  gene symbol: TAPT1
  hgvsc: ENST00000304584.8:c.189+65C>G
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000513359
  gene symbol: TAPT1
  hgvsc: ENST00000513359.1:n.651+28C>G
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000385347
  ensembl transcript: ENST00000405303
  gene symbol: TAPT1
  hgvsc: ENST00000405303.2:c.748+28C>G
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000422652
  ensembl transcript: ENST00000505603
  gene symbol: TAPT1
  hgvsc: ENST00000505603.1:c.*263+28C>G
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000507425
  gene symbol: TAPT1
  hgvsc: ENST00000507425.1:n.224+28C>G
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000382803
  ensembl transcript: ENST00000399920
  gene symbol: TAPT1
  hgvsc: ENST00000399920.3:c.415+28C>G
  variant of: http://identifiers.org/hgnc/26887
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6596
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 999
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 717
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9008
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17389
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3004
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 704
  bin: 9.75e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 19645
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 475
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2179
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2464
  bin: 9.75e1
  variant carriers: 28
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10737
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39294
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ

4-16189831-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16189831
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 16189831
    reference: chr 4
allele count: 2
allele frequency: 1.663589026966778e-5
allele num: 120222
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000507425
  gene symbol: TAPT1
  hgvsc: ENST00000507425.1:n.224+12G>C
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000382803
  ensembl transcript: ENST00000399920
  gene symbol: TAPT1
  hgvsc: ENST00000399920.3:c.415+12G>C
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000513359
  gene symbol: TAPT1
  hgvsc: ENST00000513359.1:n.651+12G>C
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000423359
  ensembl transcript: ENST00000513782
  gene symbol: TAPT1
  hgvsc: ENST00000513782.1:c.223+49G>C
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000305198
  ensembl transcript: ENST00000304584
  gene symbol: TAPT1
  hgvsc: ENST00000304584.8:c.189+49G>C
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000508888
  gene symbol: TAPT1
  hgvsc: ENST00000508888.1:n.739+12G>C
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000385347
  ensembl transcript: ENST00000405303
  gene symbol: TAPT1
  hgvsc: ENST00000405303.2:c.748+12G>C
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000422652
  ensembl transcript: ENST00000505603
  gene symbol: TAPT1
  hgvsc: ENST00000505603.1:c.*263+12G>C
  variant of: http://identifiers.org/hgnc/26887
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17654
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3008
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6952
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 686
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9020
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19787
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 999
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10845
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2210
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39881
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
population: European (Finnish)
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: MQRankSum

4-16189833-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16189833
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 16189833
    reference: chr 4
allele count: 4
allele frequency: 3.325684259536399e-5
allele num: 120276
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000507425
  gene symbol: TAPT1
  hgvsc: ENST00000507425.1:n.224+10T>C
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000305198
  ensembl transcript: ENST00000304584
  gene symbol: TAPT1
  hgvsc: ENST00000304584.8:c.189+47T>C
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000422652
  ensembl transcript: ENST00000505603
  gene symbol: TAPT1
  hgvsc: ENST00000505603.1:c.*263+10T>C
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000423359
  ensembl transcript: ENST00000513782
  gene symbol: TAPT1
  hgvsc: ENST00000513782.1:c.223+47T>C
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000508888
  gene symbol: TAPT1
  hgvsc: ENST00000508888.1:n.739+10T>C
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000513359
  gene symbol: TAPT1
  hgvsc: ENST00000513359.1:n.651+10T>C
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000385347
  ensembl transcript: ENST00000405303
  gene symbol: TAPT1
  hgvsc: ENST00000405303.2:c.748+10T>C
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000382803
  ensembl transcript: ENST00000399920
  gene symbol: TAPT1
  hgvsc: ENST00000399920.3:c.415+10T>C
  variant of: http://identifiers.org/hgnc/26887
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3008
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 999
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6988
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19797
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17673
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9021
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 687
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2223
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2438
  bin: 9.75e1
  variant carriers: 4
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
population: Other
reference allele: A
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum

4-16189850-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16189850
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 16189850
    reference: chr 4
allele count: 11
allele frequency: 9.132420091324201e-5
allele num: 120450
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000507425
  gene symbol: TAPT1
  hgvsc: ENST00000507425.1:n.217C>G
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000305198
  ensembl transcript: ENST00000304584
  gene symbol: TAPT1
  hgvsc: ENST00000304584.8:c.189+30C>G
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000422652
  ensembl transcript: ENST00000505603
  gene symbol: TAPT1
  hgvsc: ENST00000505603.1:c.*256C>G
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000513359
  gene symbol: TAPT1
  hgvsc: ENST00000513359.1:n.644C>G
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000382803
  ensembl transcript: ENST00000399920
  gene symbol: TAPT1
  hgvsc: ENST00000399920.3:c.408C>G
  hgvsp: ENST00000399920.3:c.408C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000423359
  ensembl transcript: ENST00000513782
  gene symbol: TAPT1
  hgvsc: ENST00000513782.1:c.223+30C>G
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000385347
  ensembl transcript: ENST00000405303
  gene symbol: TAPT1
  hgvsc: ENST00000405303.2:c.741C>G
  hgvsp: ENST00000405303.2:c.741C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000510868
  gene symbol: TAPT1
  hgvsc: ENST00000510868.1:n.699C>G
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000508888
  gene symbol: TAPT1
  hgvsc: ENST00000508888.1:n.732C>G
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000505152
  gene symbol: TAPT1
  hgvsc: ENST00000505152.1:n.736C>G
  variant of: http://identifiers.org/hgnc/26887
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3015
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6953
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1000
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17808
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19912
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9035
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 694
  bin: 9.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1073
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Leu247Leu
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: African
population: Other
reference allele: G
site quality: DP
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/4-16189854-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16189854
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 16189854
    reference: chr 4
allele count: 7
allele frequency: 5.826341723265415e-5
allele num: 120144
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000382803
  ensembl transcript: ENST00000399920
  gene symbol: TAPT1
  hgvsc: ENST00000399920.3:c.404T>G
  hgvsp: ENSP00000382803.3:p.Val135Gly
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000507425
  gene symbol: TAPT1
  hgvsc: ENST00000507425.1:n.213T>G
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000422652
  ensembl transcript: ENST00000505603
  gene symbol: TAPT1
  hgvsc: ENST00000505603.1:c.*252T>G
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000305198
  ensembl transcript: ENST00000304584
  gene symbol: TAPT1
  hgvsc: ENST00000304584.8:c.189+26T>G
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000505152
  gene symbol: TAPT1
  hgvsc: ENST00000505152.1:n.732T>G
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000385347
  ensembl transcript: ENST00000405303
  gene symbol: TAPT1
  hgvsc: ENST00000405303.2:c.737T>G
  hgvsp: ENSP00000385347.2:p.Val246Gly
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000510868
  gene symbol: TAPT1
  hgvsc: ENST00000510868.1:n.695T>G
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000423359
  ensembl transcript: ENST00000513782
  gene symbol: TAPT1
  hgvsc: ENST00000513782.1:c.223+26T>G
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000508888
  gene symbol: TAPT1
  hgvsc: ENST00000508888.1:n.728T>G
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000513359
  gene symbol: TAPT1
  hgvsc: ENST00000513359.1:n.640T>G
  variant of: http://identifiers.org/hgnc/26887
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.90to99.95
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3040
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19916
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1020
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9048
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 17778
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6893
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 689
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 5.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 4.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1030
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Val246Gly
num of homozygotes: 0
population: Other
population: African
population: South Asian
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: DP

4-16189855-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16189855
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 16189855
    reference: chr 4
allele count: 1
allele frequency: 8.300683976359652e-6
allele num: 120472
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000422652
  ensembl transcript: ENST00000505603
  gene symbol: TAPT1
  hgvsc: ENST00000505603.1:c.*251G>A
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000305198
  ensembl transcript: ENST00000304584
  gene symbol: TAPT1
  hgvsc: ENST00000304584.8:c.189+25G>A
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000385347
  ensembl transcript: ENST00000405303
  gene symbol: TAPT1
  hgvsc: ENST00000405303.2:c.736G>A
  hgvsp: ENSP00000385347.2:p.Val246Ile
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000382803
  ensembl transcript: ENST00000399920
  gene symbol: TAPT1
  hgvsc: ENST00000399920.3:c.403G>A
  hgvsp: ENSP00000382803.3:p.Val135Ile
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000507425
  gene symbol: TAPT1
  hgvsc: ENST00000507425.1:n.212G>A
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000511866
  gene symbol: TAPT1
  hgvsc: ENST00000511866.2:n.577G>A
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000510868
  gene symbol: TAPT1
  hgvsc: ENST00000510868.1:n.694G>A
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000513359
  gene symbol: TAPT1
  hgvsc: ENST00000513359.1:n.639G>A
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000508888
  gene symbol: TAPT1
  hgvsc: ENST00000508888.1:n.727G>A
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000505152
  gene symbol: TAPT1
  hgvsc: ENST00000505152.1:n.731G>A
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000423359
  ensembl transcript: ENST00000513782
  gene symbol: TAPT1
  hgvsc: ENST00000513782.1:c.223+25G>A
  variant of: http://identifiers.org/hgnc/26887
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17915
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 682
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3003
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6873
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9032
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 984
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20014
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val246Ile
num of homozygotes: 0
population: African
population: South Asian
population: Other
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP

4-16189861-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16189861
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 16189861
    reference: chr 4
allele count: 1
allele frequency: 8.298479718515568e-6
allele num: 120504
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000422652
  ensembl transcript: ENST00000505603
  gene symbol: TAPT1
  hgvsc: ENST00000505603.1:c.*245A>T
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000513359
  gene symbol: TAPT1
  hgvsc: ENST00000513359.1:n.633A>T
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000385347
  ensembl transcript: ENST00000405303
  gene symbol: TAPT1
  hgvsc: ENST00000405303.2:c.730A>T
  hgvsp: ENSP00000385347.2:p.Met244Leu
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000507425
  gene symbol: TAPT1
  hgvsc: ENST00000507425.1:n.206A>T
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000382803
  ensembl transcript: ENST00000399920
  gene symbol: TAPT1
  hgvsc: ENST00000399920.3:c.397A>T
  hgvsp: ENSP00000382803.3:p.Met133Leu
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000305198
  ensembl transcript: ENST00000304584
  gene symbol: TAPT1
  hgvsc: ENST00000304584.8:c.189+19A>T
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000511866
  gene symbol: TAPT1
  hgvsc: ENST00000511866.2:n.571A>T
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000423359
  ensembl transcript: ENST00000513782
  gene symbol: TAPT1
  hgvsc: ENST00000513782.1:c.223+19A>T
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000508888
  gene symbol: TAPT1
  hgvsc: ENST00000508888.1:n.721A>T
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000510868
  gene symbol: TAPT1
  hgvsc: ENST00000510868.1:n.688A>T
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000505152
  gene symbol: TAPT1
  hgvsc: ENST00000505152.1:n.725A>T
  variant of: http://identifiers.org/hgnc/26887
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9043
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 681
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 982
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6826
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3003
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20038
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17940
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Met244Leu
num of homozygotes: 0
population: East Asian
population: Other
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: T
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum

4-16189871-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16189871
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 16189871
    reference: chr 4
allele count: 1
allele frequency: 8.298204268596276e-6
allele num: 120508
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000422652
  ensembl transcript: ENST00000505603
  gene symbol: TAPT1
  hgvsc: ENST00000505603.1:c.*235T>C
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000507425
  gene symbol: TAPT1
  hgvsc: ENST00000507425.1:n.196T>C
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000510868
  gene symbol: TAPT1
  hgvsc: ENST00000510868.1:n.678T>C
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000513359
  gene symbol: TAPT1
  hgvsc: ENST00000513359.1:n.623T>C
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000305198
  ensembl transcript: ENST00000304584
  gene symbol: TAPT1
  hgvsc: ENST00000304584.8:c.189+9T>C
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000511866
  gene symbol: TAPT1
  hgvsc: ENST00000511866.2:n.561T>C
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000508888
  gene symbol: TAPT1
  hgvsc: ENST00000508888.1:n.711T>C
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000505152
  gene symbol: TAPT1
  hgvsc: ENST00000505152.1:n.715T>C
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000382803
  ensembl transcript: ENST00000399920
  gene symbol: TAPT1
  hgvsc: ENST00000399920.3:c.387T>C
  hgvsp: ENST00000399920.3:c.387T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000385347
  ensembl transcript: ENST00000405303
  gene symbol: TAPT1
  hgvsc: ENST00000405303.2:c.720T>C
  hgvsp: ENST00000405303.2:c.720T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000423359
  ensembl transcript: ENST00000513782
  gene symbol: TAPT1
  hgvsc: ENST00000513782.1:c.223+9T>C
  variant of: http://identifiers.org/hgnc/26887
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17940
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 983
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20036
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3003
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9043
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 681
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6819
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro240Pro
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: European (Finnish)
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: MQRankSum

4-16189880-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16189880
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 16189880
    reference: chr 4
allele count: 1
allele frequency: 8.301786544464368e-6
allele num: 120456
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000511866
  gene symbol: TAPT1
  hgvsc: ENST00000511866.2:n.552G>A
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000423359
  ensembl transcript: ENST00000513782
  gene symbol: TAPT1
  hgvsc: ENST00000513782.1:c.223G>A
  hgvsp: ENST00000513782.1:c.223G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000510868
  gene symbol: TAPT1
  hgvsc: ENST00000510868.1:n.669G>A
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000505152
  gene symbol: TAPT1
  hgvsc: ENST00000505152.1:n.706G>A
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000305198
  ensembl transcript: ENST00000304584
  gene symbol: TAPT1
  hgvsc: ENST00000304584.8:c.189G>A
  hgvsp: ENST00000304584.8:c.189G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000508888
  gene symbol: TAPT1
  hgvsc: ENST00000508888.1:n.702G>A
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000422652
  ensembl transcript: ENST00000505603
  gene symbol: TAPT1
  hgvsc: ENST00000505603.1:c.*226G>A
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000507425
  gene symbol: TAPT1
  hgvsc: ENST00000507425.1:n.187G>A
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000385347
  ensembl transcript: ENST00000405303
  gene symbol: TAPT1
  hgvsc: ENST00000405303.2:c.711G>A
  hgvsp: ENST00000405303.2:c.711G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000382803
  ensembl transcript: ENST00000399920
  gene symbol: TAPT1
  hgvsc: ENST00000399920.3:c.378G>A
  hgvsp: ENST00000399920.3:c.378G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000513359
  gene symbol: TAPT1
  hgvsc: ENST00000513359.1:n.614G>A
  variant of: http://identifiers.org/hgnc/26887
canonical: false
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20022
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17920
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6778
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 680
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9038
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3001
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 984
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.189G>A
num of homozygotes: 0
population: South Asian
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
reference allele: C
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff

4-16189882-CAAT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16189882
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 16189879
    reference: chr 4
allele count: 5
allele frequency: 4.151100041511001e-5
allele num: 120450
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000508888
  gene symbol: TAPT1
  hgvsc: ENST00000508888.1:n.697_699delATT
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000507425
  gene symbol: TAPT1
  hgvsc: ENST00000507425.1:n.182_184delATT
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000422652
  ensembl transcript: ENST00000505603
  gene symbol: TAPT1
  hgvsc: ENST00000505603.1:c.*221_*223delATT
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000385347
  ensembl transcript: ENST00000405303
  gene symbol: TAPT1
  hgvsc: ENST00000405303.2:c.706_708delATT
  hgvsp: ENSP00000385347.2:p.Ile236del
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000505152
  gene symbol: TAPT1
  hgvsc: ENST00000505152.1:n.701_703delATT
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000511866
  gene symbol: TAPT1
  hgvsc: ENST00000511866.2:n.547_549delATT
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000305198
  ensembl transcript: ENST00000304584
  gene symbol: TAPT1
  hgvsc: ENST00000304584.8:c.184_186delATT
  hgvsp: ENSP00000305198.8:p.Ile62del
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000513359
  gene symbol: TAPT1
  hgvsc: ENST00000513359.1:n.609_611delATT
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000382803
  ensembl transcript: ENST00000399920
  gene symbol: TAPT1
  hgvsc: ENST00000399920.3:c.373_375delATT
  hgvsp: ENSP00000382803.3:p.Ile125del
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000423359
  ensembl transcript: ENST00000513782
  gene symbol: TAPT1
  hgvsc: ENST00000513782.1:c.218_220delATT
  hgvsp: ENSP00000423359.1:p.Ile74del
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000510868
  gene symbol: TAPT1
  hgvsc: ENST00000510868.1:n.664_666delATT
  variant of: http://identifiers.org/hgnc/26887
canonical: true
consequence: inframe deletion
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3002
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20015
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17917
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 981
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6778
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9038
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 680
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ile236del
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: African
population: Latino
reference allele: CAAT
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD

http://identifiers.org/exac.variant/4-16189884-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16189884
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 16189884
    reference: chr 4
allele count: 15
allele frequency: 1.245619571174702e-4
allele num: 120422
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000422652
  ensembl transcript: ENST00000505603
  gene symbol: TAPT1
  hgvsc: ENST00000505603.1:c.*222T>G
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000382803
  ensembl transcript: ENST00000399920
  gene symbol: TAPT1
  hgvsc: ENST00000399920.3:c.374T>G
  hgvsp: ENSP00000382803.3:p.Ile125Ser
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000305198
  ensembl transcript: ENST00000304584
  gene symbol: TAPT1
  hgvsc: ENST00000304584.8:c.185T>G
  hgvsp: ENSP00000305198.8:p.Ile62Ser
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000511866
  gene symbol: TAPT1
  hgvsc: ENST00000511866.2:n.548T>G
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000507425
  gene symbol: TAPT1
  hgvsc: ENST00000507425.1:n.183T>G
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000505152
  gene symbol: TAPT1
  hgvsc: ENST00000505152.1:n.702T>G
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000385347
  ensembl transcript: ENST00000405303
  gene symbol: TAPT1
  hgvsc: ENST00000405303.2:c.707T>G
  hgvsp: ENSP00000385347.2:p.Ile236Ser
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000510868
  gene symbol: TAPT1
  hgvsc: ENST00000510868.1:n.665T>G
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000423359
  ensembl transcript: ENST00000513782
  gene symbol: TAPT1
  hgvsc: ENST00000513782.1:c.219T>G
  hgvsp: ENSP00000423359.1:p.Ile74Ser
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000508888
  gene symbol: TAPT1
  hgvsc: ENST00000508888.1:n.698T>G
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000513359
  gene symbol: TAPT1
  hgvsc: ENST00000513359.1:n.610T>G
  variant of: http://identifiers.org/hgnc/26887
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20000
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 981
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6778
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17905
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3003
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 684
  bin: 9.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 9037
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ile236Ser
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Latino
population: Other
population: African
reference allele: A
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum

4-16189887-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16189887
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 16189887
    reference: chr 4
allele count: 1
allele frequency: 8.305233958440609e-6
allele num: 120406
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000508888
  gene symbol: TAPT1
  hgvsc: ENST00000508888.1:n.695A>C
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000422652
  ensembl transcript: ENST00000505603
  gene symbol: TAPT1
  hgvsc: ENST00000505603.1:c.*219A>C
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000505152
  gene symbol: TAPT1
  hgvsc: ENST00000505152.1:n.699A>C
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000382803
  ensembl transcript: ENST00000399920
  gene symbol: TAPT1
  hgvsc: ENST00000399920.3:c.371A>C
  hgvsp: ENSP00000382803.3:p.His124Pro
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000423359
  ensembl transcript: ENST00000513782
  gene symbol: TAPT1
  hgvsc: ENST00000513782.1:c.216A>C
  hgvsp: ENSP00000423359.1:p.His73Pro
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000385347
  ensembl transcript: ENST00000405303
  gene symbol: TAPT1
  hgvsc: ENST00000405303.2:c.704A>C
  hgvsp: ENSP00000385347.2:p.His235Pro
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000510868
  gene symbol: TAPT1
  hgvsc: ENST00000510868.1:n.662A>C
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000507425
  gene symbol: TAPT1
  hgvsc: ENST00000507425.1:n.180A>C
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000305198
  ensembl transcript: ENST00000304584
  gene symbol: TAPT1
  hgvsc: ENST00000304584.8:c.182A>C
  hgvsp: ENSP00000305198.8:p.His61Pro
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000513359
  gene symbol: TAPT1
  hgvsc: ENST00000513359.1:n.607A>C
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000511866
  gene symbol: TAPT1
  hgvsc: ENST00000511866.2:n.545A>C
  variant of: http://identifiers.org/hgnc/26887
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 977
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3000
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 675
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9031
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17893
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6761
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19999
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.His235Pro
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
population: East Asian
population: Latino
population: South Asian
reference allele: T
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum

4-16189892-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16189892
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 16189892
    reference: chr 4
allele count: 2
allele frequency: 1.662593313049695e-5
allele num: 120294
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000422652
  ensembl transcript: ENST00000505603
  gene symbol: TAPT1
  hgvsc: ENST00000505603.1:c.*214A>T
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000305198
  ensembl transcript: ENST00000304584
  gene symbol: TAPT1
  hgvsc: ENST00000304584.8:c.177A>T
  hgvsp: ENSP00000305198.8:p.Arg59Ser
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000508888
  gene symbol: TAPT1
  hgvsc: ENST00000508888.1:n.690A>T
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000510868
  gene symbol: TAPT1
  hgvsc: ENST00000510868.1:n.657A>T
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000385347
  ensembl transcript: ENST00000405303
  gene symbol: TAPT1
  hgvsc: ENST00000405303.2:c.699A>T
  hgvsp: ENSP00000385347.2:p.Arg233Ser
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000505152
  gene symbol: TAPT1
  hgvsc: ENST00000505152.1:n.694A>T
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000507425
  gene symbol: TAPT1
  hgvsc: ENST00000507425.1:n.175A>T
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000513359
  gene symbol: TAPT1
  hgvsc: ENST00000513359.1:n.602A>T
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000423359
  ensembl transcript: ENST00000513782
  gene symbol: TAPT1
  hgvsc: ENST00000513782.1:c.211A>T
  hgvsp: ENSP00000423359.1:p.Arg71Ser
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000382803
  ensembl transcript: ENST00000399920
  gene symbol: TAPT1
  hgvsc: ENST00000399920.3:c.366A>T
  hgvsp: ENSP00000382803.3:p.Arg122Ser
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000511866
  gene symbol: TAPT1
  hgvsc: ENST00000511866.2:n.540A>T
  variant of: http://identifiers.org/hgnc/26887
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17828
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19960
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2988
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 674
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6704
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 971
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9015
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg233Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
population: Latino
population: South Asian
population: Other
reference allele: T
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum

4-16189897-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16189897
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 16189897
    reference: chr 4
allele count: 1
allele frequency: 8.311999202048076e-6
allele num: 120308
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000382803
  ensembl transcript: ENST00000399920
  gene symbol: TAPT1
  hgvsc: ENST00000399920.3:c.361A>C
  hgvsp: ENSP00000382803.3:p.Lys121Gln
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000385347
  ensembl transcript: ENST00000405303
  gene symbol: TAPT1
  hgvsc: ENST00000405303.2:c.694A>C
  hgvsp: ENSP00000385347.2:p.Lys232Gln
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000507425
  gene symbol: TAPT1
  hgvsc: ENST00000507425.1:n.170A>C
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000505152
  gene symbol: TAPT1
  hgvsc: ENST00000505152.1:n.689A>C
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000305198
  ensembl transcript: ENST00000304584
  gene symbol: TAPT1
  hgvsc: ENST00000304584.8:c.172A>C
  hgvsp: ENSP00000305198.8:p.Lys58Gln
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000422652
  ensembl transcript: ENST00000505603
  gene symbol: TAPT1
  hgvsc: ENST00000505603.1:c.*209A>C
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000423359
  ensembl transcript: ENST00000513782
  gene symbol: TAPT1
  hgvsc: ENST00000513782.1:c.206A>C
  hgvsp: ENSP00000423359.1:p.Lys70Gln
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000511866
  gene symbol: TAPT1
  hgvsc: ENST00000511866.2:n.535A>C
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000510868
  gene symbol: TAPT1
  hgvsc: ENST00000510868.1:n.652A>C
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000513359
  gene symbol: TAPT1
  hgvsc: ENST00000513359.1:n.597A>C
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000508888
  gene symbol: TAPT1
  hgvsc: ENST00000508888.1:n.685A>C
  variant of: http://identifiers.org/hgnc/26887
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2982
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17839
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9005
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6731
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19944
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 971
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 674
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Lys232Gln
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: East Asian
population: South Asian
reference allele: T
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: ClippingRankSum

4-16189898-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16189898
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 16189898
    reference: chr 4
allele count: 1
allele frequency: 8.312690152787244e-6
allele num: 120298
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000510868
  gene symbol: TAPT1
  hgvsc: ENST00000510868.1:n.651A>G
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000305198
  ensembl transcript: ENST00000304584
  gene symbol: TAPT1
  hgvsc: ENST00000304584.8:c.171A>G
  hgvsp: ENST00000304584.8:c.171A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000511866
  gene symbol: TAPT1
  hgvsc: ENST00000511866.2:n.534A>G
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000505152
  gene symbol: TAPT1
  hgvsc: ENST00000505152.1:n.688A>G
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000422652
  ensembl transcript: ENST00000505603
  gene symbol: TAPT1
  hgvsc: ENST00000505603.1:c.*208A>G
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000385347
  ensembl transcript: ENST00000405303
  gene symbol: TAPT1
  hgvsc: ENST00000405303.2:c.693A>G
  hgvsp: ENST00000405303.2:c.693A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000423359
  ensembl transcript: ENST00000513782
  gene symbol: TAPT1
  hgvsc: ENST00000513782.1:c.205A>G
  hgvsp: ENST00000513782.1:c.205A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000508888
  gene symbol: TAPT1
  hgvsc: ENST00000508888.1:n.684A>G
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000513359
  gene symbol: TAPT1
  hgvsc: ENST00000513359.1:n.596A>G
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000382803
  ensembl transcript: ENST00000399920
  gene symbol: TAPT1
  hgvsc: ENST00000399920.3:c.360A>G
  hgvsp: ENST00000399920.3:c.360A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000507425
  gene symbol: TAPT1
  hgvsc: ENST00000507425.1:n.169A>G
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000422752
  ensembl transcript: ENST00000513833
  gene symbol: TAPT1
  hgvsc: ENST00000513833.1:c.*276A>G
  variant of: http://identifiers.org/hgnc/26887
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19944
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2981
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 674
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9002
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17832
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 970
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6734
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg231Arg
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
population: Latino
population: Other
population: European (Finnish)
reference allele: T
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum

4-16189901-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16189901
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 16189901
    reference: chr 4
allele count: 1
allele frequency: 8.317114959162966e-6
allele num: 120234
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000505152
  gene symbol: TAPT1
  hgvsc: ENST00000505152.1:n.685A>G
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000305198
  ensembl transcript: ENST00000304584
  gene symbol: TAPT1
  hgvsc: ENST00000304584.8:c.168A>G
  hgvsp: ENST00000304584.8:c.168A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000423359
  ensembl transcript: ENST00000513782
  gene symbol: TAPT1
  hgvsc: ENST00000513782.1:c.202A>G
  hgvsp: ENST00000513782.1:c.202A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000422752
  ensembl transcript: ENST00000513833
  gene symbol: TAPT1
  hgvsc: ENST00000513833.1:c.*273A>G
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000508888
  gene symbol: TAPT1
  hgvsc: ENST00000508888.1:n.681A>G
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000422652
  ensembl transcript: ENST00000505603
  gene symbol: TAPT1
  hgvsc: ENST00000505603.1:c.*205A>G
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000513359
  gene symbol: TAPT1
  hgvsc: ENST00000513359.1:n.593A>G
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000385347
  ensembl transcript: ENST00000405303
  gene symbol: TAPT1
  hgvsc: ENST00000405303.2:c.690A>G
  hgvsp: ENST00000405303.2:c.690A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000510868
  gene symbol: TAPT1
  hgvsc: ENST00000510868.1:n.648A>G
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000382803
  ensembl transcript: ENST00000399920
  gene symbol: TAPT1
  hgvsc: ENST00000399920.3:c.357A>G
  hgvsp: ENST00000399920.3:c.357A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000507425
  gene symbol: TAPT1
  hgvsc: ENST00000507425.1:n.166A>G
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000511866
  gene symbol: TAPT1
  hgvsc: ENST00000511866.2:n.531A>G
  variant of: http://identifiers.org/hgnc/26887
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8998
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19919
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17780
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2980
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6731
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Glu230Glu
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Other
population: Latino
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: DP

4-16189913-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16189913
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 16189913
    reference: chr 4
allele count: 1
allele frequency: 8.333611120370679e-6
allele num: 119996
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000422752
  ensembl transcript: ENST00000513833
  gene symbol: TAPT1
  hgvsc: ENST00000513833.1:c.*261A>C
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000305198
  ensembl transcript: ENST00000304584
  gene symbol: TAPT1
  hgvsc: ENST00000304584.8:c.156A>C
  hgvsp: ENST00000304584.8:c.156A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000507425
  gene symbol: TAPT1
  hgvsc: ENST00000507425.1:n.154A>C
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000422652
  ensembl transcript: ENST00000505603
  gene symbol: TAPT1
  hgvsc: ENST00000505603.1:c.*193A>C
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000423359
  ensembl transcript: ENST00000513782
  gene symbol: TAPT1
  hgvsc: ENST00000513782.1:c.190A>C
  hgvsp: ENST00000513782.1:c.190A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000382803
  ensembl transcript: ENST00000399920
  gene symbol: TAPT1
  hgvsc: ENST00000399920.3:c.345A>C
  hgvsp: ENST00000399920.3:c.345A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000508888
  gene symbol: TAPT1
  hgvsc: ENST00000508888.1:n.669A>C
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000513359
  gene symbol: TAPT1
  hgvsc: ENST00000513359.1:n.581A>C
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000511866
  gene symbol: TAPT1
  hgvsc: ENST00000511866.2:n.519A>C
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000385347
  ensembl transcript: ENST00000405303
  gene symbol: TAPT1
  hgvsc: ENST00000405303.2:c.678A>C
  hgvsp: ENST00000405303.2:c.678A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000510868
  gene symbol: TAPT1
  hgvsc: ENST00000510868.1:n.636A>C
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000505152
  gene symbol: TAPT1
  hgvsc: ENST00000505152.1:n.673A>C
  variant of: http://identifiers.org/hgnc/26887
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19803
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17629
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8975
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2974
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6745
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 673
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 968
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr226Thr
num of homozygotes: 0
population: South Asian
population: Other
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: T
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum

4-16189915-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16189915
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 16189915
    reference: chr 4
allele count: 1
allele frequency: 8.337919188887221e-6
allele num: 119934
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000422652
  ensembl transcript: ENST00000505603
  gene symbol: TAPT1
  hgvsc: ENST00000505603.1:c.*191A>G
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000508888
  gene symbol: TAPT1
  hgvsc: ENST00000508888.1:n.667A>G
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000305198
  ensembl transcript: ENST00000304584
  gene symbol: TAPT1
  hgvsc: ENST00000304584.8:c.154A>G
  hgvsp: ENSP00000305198.8:p.Thr52Ala
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000513359
  gene symbol: TAPT1
  hgvsc: ENST00000513359.1:n.579A>G
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000382803
  ensembl transcript: ENST00000399920
  gene symbol: TAPT1
  hgvsc: ENST00000399920.3:c.343A>G
  hgvsp: ENSP00000382803.3:p.Thr115Ala
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000385347
  ensembl transcript: ENST00000405303
  gene symbol: TAPT1
  hgvsc: ENST00000405303.2:c.676A>G
  hgvsp: ENSP00000385347.2:p.Thr226Ala
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000510868
  gene symbol: TAPT1
  hgvsc: ENST00000510868.1:n.634A>G
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000423359
  ensembl transcript: ENST00000513782
  gene symbol: TAPT1
  hgvsc: ENST00000513782.1:c.188A>G
  hgvsp: ENSP00000423359.1:p.Thr64Ala
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000505152
  gene symbol: TAPT1
  hgvsc: ENST00000505152.1:n.671A>G
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000507425
  gene symbol: TAPT1
  hgvsc: ENST00000507425.1:n.152A>G
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000511866
  gene symbol: TAPT1
  hgvsc: ENST00000511866.2:n.517A>G
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000422752
  ensembl transcript: ENST00000513833
  gene symbol: TAPT1
  hgvsc: ENST00000513833.1:c.*259A>G
  variant of: http://identifiers.org/hgnc/26887
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19778
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2974
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17602
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6728
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 521
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 969
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr226Ala
num of homozygotes: 0
population: East Asian
population: African
population: South Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
reference allele: T
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum

4-16189916-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16189916
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 16189916
    reference: chr 4
allele count: 13
allele frequency: 1.084399659665338e-4
allele num: 119882
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000510868
  gene symbol: TAPT1
  hgvsc: ENST00000510868.1:n.633A>G
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000382803
  ensembl transcript: ENST00000399920
  gene symbol: TAPT1
  hgvsc: ENST00000399920.3:c.342A>G
  hgvsp: ENST00000399920.3:c.342A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000505152
  gene symbol: TAPT1
  hgvsc: ENST00000505152.1:n.670A>G
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000385347
  ensembl transcript: ENST00000405303
  gene symbol: TAPT1
  hgvsc: ENST00000405303.2:c.675A>G
  hgvsp: ENST00000405303.2:c.675A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000511866
  gene symbol: TAPT1
  hgvsc: ENST00000511866.2:n.516A>G
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000422752
  ensembl transcript: ENST00000513833
  gene symbol: TAPT1
  hgvsc: ENST00000513833.1:c.*258A>G
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000423359
  ensembl transcript: ENST00000513782
  gene symbol: TAPT1
  hgvsc: ENST00000513782.1:c.187A>G
  hgvsp: ENST00000513782.1:c.187A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000422652
  ensembl transcript: ENST00000505603
  gene symbol: TAPT1
  hgvsc: ENST00000505603.1:c.*190A>G
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000305198
  ensembl transcript: ENST00000304584
  gene symbol: TAPT1
  hgvsc: ENST00000304584.8:c.153A>G
  hgvsp: ENST00000304584.8:c.153A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000507425
  gene symbol: TAPT1
  hgvsc: ENST00000507425.1:n.151A>G
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000508888
  gene symbol: TAPT1
  hgvsc: ENST00000508888.1:n.666A>G
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000513359
  gene symbol: TAPT1
  hgvsc: ENST00000513359.1:n.578A>G
  variant of: http://identifiers.org/hgnc/26887
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19758
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17553
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2974
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 968
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8971
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 673
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
hgvs: p.Ala225Ala
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: African
population: Other
population: South Asian
reference allele: T
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD

4-16189923-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16189923
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 16189923
    reference: chr 4
allele count: 1
allele frequency: 8.36456102783726e-6
allele num: 119552
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000507425
  gene symbol: TAPT1
  hgvsc: ENST00000507425.1:n.144G>A
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000511866
  gene symbol: TAPT1
  hgvsc: ENST00000511866.2:n.509G>A
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000382803
  ensembl transcript: ENST00000399920
  gene symbol: TAPT1
  hgvsc: ENST00000399920.3:c.335G>A
  hgvsp: ENSP00000382803.3:p.Trp112Ter
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000423359
  ensembl transcript: ENST00000513782
  gene symbol: TAPT1
  hgvsc: ENST00000513782.1:c.180G>A
  hgvsp: ENSP00000423359.1:p.Trp61Ter
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000513359
  gene symbol: TAPT1
  hgvsc: ENST00000513359.1:n.571G>A
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000422652
  ensembl transcript: ENST00000505603
  gene symbol: TAPT1
  hgvsc: ENST00000505603.1:c.*183G>A
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000422752
  ensembl transcript: ENST00000513833
  gene symbol: TAPT1
  hgvsc: ENST00000513833.1:c.*251G>A
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000505152
  gene symbol: TAPT1
  hgvsc: ENST00000505152.1:n.663G>A
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000385347
  ensembl transcript: ENST00000405303
  gene symbol: TAPT1
  hgvsc: ENST00000405303.2:c.668G>A
  hgvsp: ENSP00000385347.2:p.Trp223Ter
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000305198
  ensembl transcript: ENST00000304584
  gene symbol: TAPT1
  hgvsc: ENST00000304584.8:c.146G>A
  hgvsp: ENSP00000305198.8:p.Trp49Ter
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000508888
  gene symbol: TAPT1
  hgvsc: ENST00000508888.1:n.659G>A
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000510868
  gene symbol: TAPT1
  hgvsc: ENST00000510868.1:n.626G>A
  variant of: http://identifiers.org/hgnc/26887
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6641
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 968
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 558
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17382
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8941
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 829
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 672
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Trp223Ter
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
reference allele: C
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: MQ

4-16189925-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16189925
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 16189925
    reference: chr 4
allele count: 2
allele frequency: 1.673472119954482e-5
allele num: 119512
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000513359
  gene symbol: TAPT1
  hgvsc: ENST00000513359.1:n.569T>C
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000385347
  ensembl transcript: ENST00000405303
  gene symbol: TAPT1
  hgvsc: ENST00000405303.2:c.666T>C
  hgvsp: ENST00000405303.2:c.666T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000505152
  gene symbol: TAPT1
  hgvsc: ENST00000505152.1:n.661T>C
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000510868
  gene symbol: TAPT1
  hgvsc: ENST00000510868.1:n.624T>C
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000422652
  ensembl transcript: ENST00000505603
  gene symbol: TAPT1
  hgvsc: ENST00000505603.1:c.*181T>C
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000382803
  ensembl transcript: ENST00000399920
  gene symbol: TAPT1
  hgvsc: ENST00000399920.3:c.333T>C
  hgvsp: ENST00000399920.3:c.333T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000422752
  ensembl transcript: ENST00000513833
  gene symbol: TAPT1
  hgvsc: ENST00000513833.1:c.*249T>C
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000305198
  ensembl transcript: ENST00000304584
  gene symbol: TAPT1
  hgvsc: ENST00000304584.8:c.144T>C
  hgvsp: ENST00000304584.8:c.144T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000423359
  ensembl transcript: ENST00000513782
  gene symbol: TAPT1
  hgvsc: ENST00000513782.1:c.178T>C
  hgvsp: ENST00000513782.1:c.178T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000511866
  gene symbol: TAPT1
  hgvsc: ENST00000511866.2:n.507T>C
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000507425
  gene symbol: TAPT1
  hgvsc: ENST00000507425.1:n.142T>C
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000508888
  gene symbol: TAPT1
  hgvsc: ENST00000508888.1:n.657T>C
  variant of: http://identifiers.org/hgnc/26887
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17373
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8939
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 578
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2959
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19573
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 868
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 967
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6640
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Tyr222Tyr
num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: European (Finnish)
population: East Asian
reference allele: A
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum

4-16189926-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16189926
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 16189926
    reference: chr 4
allele count: 1
allele frequency: 8.368060785593547e-6
allele num: 119502
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000382803
  ensembl transcript: ENST00000399920
  gene symbol: TAPT1
  hgvsc: ENST00000399920.3:c.332A>G
  hgvsp: ENSP00000382803.3:p.Tyr111Cys
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000510868
  gene symbol: TAPT1
  hgvsc: ENST00000510868.1:n.623A>G
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000305198
  ensembl transcript: ENST00000304584
  gene symbol: TAPT1
  hgvsc: ENST00000304584.8:c.143A>G
  hgvsp: ENSP00000305198.8:p.Tyr48Cys
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000513359
  gene symbol: TAPT1
  hgvsc: ENST00000513359.1:n.568A>G
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000385347
  ensembl transcript: ENST00000405303
  gene symbol: TAPT1
  hgvsc: ENST00000405303.2:c.665A>G
  hgvsp: ENSP00000385347.2:p.Tyr222Cys
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000508888
  gene symbol: TAPT1
  hgvsc: ENST00000508888.1:n.656A>G
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000422752
  ensembl transcript: ENST00000513833
  gene symbol: TAPT1
  hgvsc: ENST00000513833.1:c.*248A>G
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000423359
  ensembl transcript: ENST00000513782
  gene symbol: TAPT1
  hgvsc: ENST00000513782.1:c.177A>G
  hgvsp: ENSP00000423359.1:p.Tyr60Cys
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000507425
  gene symbol: TAPT1
  hgvsc: ENST00000507425.1:n.141A>G
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000511866
  gene symbol: TAPT1
  hgvsc: ENST00000511866.2:n.506A>G
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000505152
  gene symbol: TAPT1
  hgvsc: ENST00000505152.1:n.660A>G
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000422652
  ensembl transcript: ENST00000505603
  gene symbol: TAPT1
  hgvsc: ENST00000505603.1:c.*180A>G
  variant of: http://identifiers.org/hgnc/26887
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8936
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 966
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17378
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6645
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19570
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 869
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Tyr222Cys
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: African
population: Other
population: South Asian
reference allele: T
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum

4-16189931-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16189931
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 16189931
    reference: chr 4
allele count: 1
allele frequency: 8.382229673093043e-6
allele num: 119300
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000511866
  gene symbol: TAPT1
  hgvsc: ENST00000511866.2:n.501T>C
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000423359
  ensembl transcript: ENST00000513782
  gene symbol: TAPT1
  hgvsc: ENST00000513782.1:c.172T>C
  hgvsp: ENST00000513782.1:c.172T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000382803
  ensembl transcript: ENST00000399920
  gene symbol: TAPT1
  hgvsc: ENST00000399920.3:c.327T>C
  hgvsp: ENST00000399920.3:c.327T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000505152
  gene symbol: TAPT1
  hgvsc: ENST00000505152.1:n.655T>C
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000422752
  ensembl transcript: ENST00000513833
  gene symbol: TAPT1
  hgvsc: ENST00000513833.1:c.*243T>C
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000385347
  ensembl transcript: ENST00000405303
  gene symbol: TAPT1
  hgvsc: ENST00000405303.2:c.660T>C
  hgvsp: ENST00000405303.2:c.660T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000422652
  ensembl transcript: ENST00000505603
  gene symbol: TAPT1
  hgvsc: ENST00000505603.1:c.*175T>C
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000305198
  ensembl transcript: ENST00000304584
  gene symbol: TAPT1
  hgvsc: ENST00000304584.8:c.138T>C
  hgvsp: ENST00000304584.8:c.138T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000510868
  gene symbol: TAPT1
  hgvsc: ENST00000510868.1:n.618T>C
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000507425
  gene symbol: TAPT1
  hgvsc: ENST00000507425.1:n.136T>C
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000508888
  gene symbol: TAPT1
  hgvsc: ENST00000508888.1:n.651T>C
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000513359
  gene symbol: TAPT1
  hgvsc: ENST00000513359.1:n.563T>C
  variant of: http://identifiers.org/hgnc/26887
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1174
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17130
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2954
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8920
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 963
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 648
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19462
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 670
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6611
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala220Ala
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: African
population: Other
population: South Asian
reference allele: A
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum

4-16189942-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16189942
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 16189942
    reference: chr 4
allele count: 3
allele frequency: 2.523340903356043e-5
allele num: 118890
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000508888
  gene symbol: TAPT1
  hgvsc: ENST00000508888.1:n.640A>G
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000507425
  gene symbol: TAPT1
  hgvsc: ENST00000507425.1:n.125A>G
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000423359
  ensembl transcript: ENST00000513782
  gene symbol: TAPT1
  hgvsc: ENST00000513782.1:c.161A>G
  hgvsp: ENSP00000423359.1:p.Ile55Val
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000422752
  ensembl transcript: ENST00000513833
  gene symbol: TAPT1
  hgvsc: ENST00000513833.1:c.*232A>G
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000505152
  gene symbol: TAPT1
  hgvsc: ENST00000505152.1:n.644A>G
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000511866
  gene symbol: TAPT1
  hgvsc: ENST00000511866.2:n.490A>G
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000510868
  gene symbol: TAPT1
  hgvsc: ENST00000510868.1:n.607A>G
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000305198
  ensembl transcript: ENST00000304584
  gene symbol: TAPT1
  hgvsc: ENST00000304584.8:c.127A>G
  hgvsp: ENSP00000305198.8:p.Ile43Val
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000513359
  gene symbol: TAPT1
  hgvsc: ENST00000513359.1:n.552A>G
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000385347
  ensembl transcript: ENST00000405303
  gene symbol: TAPT1
  hgvsc: ENST00000405303.2:c.649A>G
  hgvsp: ENSP00000385347.2:p.Ile217Val
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000382803
  ensembl transcript: ENST00000399920
  gene symbol: TAPT1
  hgvsc: ENST00000399920.3:c.316A>G
  hgvsp: ENSP00000382803.3:p.Ile106Val
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000422652
  ensembl transcript: ENST00000505603
  gene symbol: TAPT1
  hgvsc: ENST00000505603.1:c.*164A>G
  variant of: http://identifiers.org/hgnc/26887
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2944
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 670
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16542
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8888
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1874
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19185
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6481
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 958
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ile217Val
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: African
population: Latino
population: East Asian
population: South Asian
reference allele: T
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQ

4-16189964-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16189964
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 16189964
    reference: chr 4
allele count: 1
allele frequency: 8.643341169962661e-6
allele num: 115696
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000422752
  ensembl transcript: ENST00000513833
  gene symbol: TAPT1
  hgvsc: ENST00000513833.1:c.*210G>C
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000513359
  gene symbol: TAPT1
  hgvsc: ENST00000513359.1:n.530G>C
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000507425
  gene symbol: TAPT1
  hgvsc: ENST00000507425.1:n.103G>C
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000423359
  ensembl transcript: ENST00000513782
  gene symbol: TAPT1
  hgvsc: ENST00000513782.1:c.139G>C
  hgvsp: ENST00000513782.1:c.139G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000305198
  ensembl transcript: ENST00000304584
  gene symbol: TAPT1
  hgvsc: ENST00000304584.8:c.105G>C
  hgvsp: ENST00000304584.8:c.105G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000505152
  gene symbol: TAPT1
  hgvsc: ENST00000505152.1:n.622G>C
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000511866
  gene symbol: TAPT1
  hgvsc: ENST00000511866.2:n.468G>C
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000510868
  gene symbol: TAPT1
  hgvsc: ENST00000510868.1:n.585G>C
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000385347
  ensembl transcript: ENST00000405303
  gene symbol: TAPT1
  hgvsc: ENST00000405303.2:c.627G>C
  hgvsp: ENST00000405303.2:c.627G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000382803
  ensembl transcript: ENST00000399920
  gene symbol: TAPT1
  hgvsc: ENST00000399920.3:c.294G>C
  hgvsp: ENST00000399920.3:c.294G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000508888
  gene symbol: TAPT1
  hgvsc: ENST00000508888.1:n.618G>C
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000422652
  ensembl transcript: ENST00000505603
  gene symbol: TAPT1
  hgvsc: ENST00000505603.1:c.*142G>C
  variant of: http://identifiers.org/hgnc/26887
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1922
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11303
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5293
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2863
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 943
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5250
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8449
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 670
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5279
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu209Leu
num of homozygotes: 0
population: European (Finnish)
population: African
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
reference allele: C
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: QD

4-16189969-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16189969
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 16189969
    reference: chr 4
allele count: 1
allele frequency: 8.841263947093876e-6
allele num: 113106
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000305198
  ensembl transcript: ENST00000304584
  gene symbol: TAPT1
  hgvsc: ENST00000304584.8:c.100C>T
  hgvsp: ENSP00000305198.8:p.Arg34Cys
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000423359
  ensembl transcript: ENST00000513782
  gene symbol: TAPT1
  hgvsc: ENST00000513782.1:c.134C>T
  hgvsp: ENSP00000423359.1:p.Arg46Cys
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000422652
  ensembl transcript: ENST00000505603
  gene symbol: TAPT1
  hgvsc: ENST00000505603.1:c.*137C>T
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000511866
  gene symbol: TAPT1
  hgvsc: ENST00000511866.2:n.463C>T
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000505152
  gene symbol: TAPT1
  hgvsc: ENST00000505152.1:n.617C>T
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000508888
  gene symbol: TAPT1
  hgvsc: ENST00000508888.1:n.613C>T
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000510868
  gene symbol: TAPT1
  hgvsc: ENST00000510868.1:n.580C>T
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000385347
  ensembl transcript: ENST00000405303
  gene symbol: TAPT1
  hgvsc: ENST00000405303.2:c.622C>T
  hgvsp: ENSP00000385347.2:p.Arg208Cys
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000382803
  ensembl transcript: ENST00000399920
  gene symbol: TAPT1
  hgvsc: ENST00000399920.3:c.289C>T
  hgvsp: ENSP00000382803.3:p.Arg97Cys
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000513359
  gene symbol: TAPT1
  hgvsc: ENST00000513359.1:n.525C>T
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169762
  ensembl transcript: ENST00000507425
  gene symbol: TAPT1
  hgvsc: ENST00000507425.1:n.98C>T
  variant of: http://identifiers.org/hgnc/26887
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000169762
  ensembl protein: ENSP00000422752
  ensembl transcript: ENST00000513833
  gene symbol: TAPT1
  hgvsc: ENST00000513833.1:c.*205C>T
  variant of: http://identifiers.org/hgnc/26887
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 931
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8423
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8805
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7206
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6475
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2646
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2807
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7031
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 765
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Arg208Cys
num of homozygotes: 0
reference allele: G

GenotypeQuality
all individuals: 7540
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 178
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 758
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6059
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 216
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 233
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 162
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 763
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2758
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 22
bin: 4.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2278
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7824
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 242
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 704
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.037344398340249e-4
allele num: 9640
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1632
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 446
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.61e-1

QD
type: SiteQuality
SIO_000300: 1.205e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.23e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 5.88894e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.07e0

MQRankSum
type: SiteQuality
SIO_000300: 1.5e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 2.43e0

VQSLOD
type: SiteQuality
SIO_000300: -4.6e-1

FS
type: SiteQuality
SIO_000300: 1.497e0

GenotypeQuality
all individuals: 6908
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1754
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 405
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 117
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4770
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 670
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 231
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 289
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 122
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2756
bin: 9.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 738
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 474
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2334
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9808
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1648
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7688
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 250
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.23e0

DP
type: SiteQuality
SIO_000300: 5.86823e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 1.23e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.23e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.231e0

VQSLOD
type: SiteQuality
SIO_000300: -2.915e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.35e-2

QD
type: SiteQuality
SIO_000300: 8.31e0

GenotypeQuality
all individuals: 69
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2592
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 306
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 227
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 897
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 177
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2276
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 122
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 417
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 2292
bin: 1.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1672
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 772
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7584
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2388
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 9.994003597841295e-5
allele num: 10006
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 510
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 242
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.788e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.22e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.96e-2

MQRankSum
type: SiteQuality
SIO_000300: 5.89e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.18e-1

DP
type: SiteQuality
SIO_000300: 5.89857e5

BaseQRankSum
type: SiteQuality
SIO_000300: 1.23e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.922e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 2213
bin: 1.25e1
variant carriers: 5

GenotypeQuality
all individuals: 2547
bin: 6.25e1
variant carriers: 8

GenotypeQuality
all individuals: 318
bin: 7.75e1
variant carriers: 5

GenotypeQuality
all individuals: 132
bin: 8.75e1
variant carriers: 9

GenotypeQuality
all individuals: 1099
bin: 3.25e1
variant carriers: 1

GenotypeQuality
all individuals: 426
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 954
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 229
bin: 8.25e1
variant carriers: 5

GenotypeQuality
all individuals: 186
bin: 9.25e1
variant carriers: 9

GenotypeQuality
all individuals: 223
bin: 7.25e1
variant carriers: 3

European (Finnish)
type: Population
allele count: 3
allele frequency: 1.78359096313912e-3
allele num: 1682
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.96078431372549e-3
allele num: 510
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.317523056653491e-4
allele num: 7590
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 4.111842105263158e-4
allele num: 2432
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 242
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 65
allele frequency: 6.403940886699508e-3
allele num: 10150
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 798
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.72e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.32e0

QD
type: SiteQuality
SIO_000300: 1.383e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.59e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 2.22e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.58e-1

DP
type: SiteQuality
SIO_000300: 5.98279e5

BaseQRankSum
type: SiteQuality
SIO_000300: -7.79e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 1.116e0

GenotypeQuality
all individuals: 317
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1121
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10387
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2491
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 121
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 179
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 223
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 229
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 315
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 4.111842105263158e-4
allele num: 2432
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 244
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10144
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 802
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 512
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7570
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1690
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.134e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.53e0

DP
type: SiteQuality
SIO_000300: 6.01122e5

QD
type: SiteQuality
SIO_000300: 1.635e1

VQSLOD
type: SiteQuality
SIO_000300: -2.581e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.13e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -1.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.7e-2

GenotypeQuality
all individuals: 2239
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 735
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4371
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 200
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1862
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4008
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 805
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 397
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 275
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10750
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15514
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8082
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.605445671718469e-5
allele num: 62288
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 828
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9024
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6380
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.393e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.85e-1

DP
type: SiteQuality
SIO_000300: 1.428341e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 4.5e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 2.9e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.85e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.85e-1

QD
type: SiteQuality
SIO_000300: 8.34e0

GenotypeQuality
all individuals: 916
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4094
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 409
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 30548
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 111
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 277
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 810
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 197
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4248
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4065
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9040
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15554
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.566416040100251e-4
allele num: 6384
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10752
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8084
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 14
allele frequency: 2.244740892765521e-4
allele num: 62368
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 828
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.29e-1

QD
type: SiteQuality
SIO_000300: 1.572e1

VQSLOD
type: SiteQuality
SIO_000300: 8.2e-1

FS
type: SiteQuality
SIO_000300: 3.225e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.54e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.3e-3

MQRankSum
type: SiteQuality
SIO_000300: 2.48e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.71e0

DP
type: SiteQuality
SIO_000300: 1.435647e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 110
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 398
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3932
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 768
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1558
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4123
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 275
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 399
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 729
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32519
bin: 6.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15564
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8104
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62440
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6380
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9042
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 9.278159213212098e-5
allele num: 10778
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 828
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.451087e6

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.5e0

MQRankSum
type: SiteQuality
SIO_000300: 1.84e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.909999999999999e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.2e-3

VQSLOD
type: SiteQuality
SIO_000300: 1.67e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.83e-1

QD
type: SiteQuality
SIO_000300: 1.42e1

MQ
type: SiteQuality
SIO_000300: 5.917e1

GenotypeQuality
all individuals: 274
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 510
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 723
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2142
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 402
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3287
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4356
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40262
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 808
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 531
bin: 4.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 842
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9126
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.575696457834363e-5
allele num: 63464
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6446
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10956
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15722
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8280
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -8.244e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.11e-1

QD
type: SiteQuality
SIO_000300: 1.159e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.49e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.415e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.7e-3

FS
type: SiteQuality
SIO_000300: 3.292e0

MQ
type: SiteQuality
SIO_000300: 5.778e1

DP
type: SiteQuality
SIO_000300: 1.521793e6

BaseQRankSum
type: SiteQuality
SIO_000300: -7.9e-2

GenotypeQuality
all individuals: 22
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 776
bin: 7.25e1
variant carriers: 2

GenotypeQuality
all individuals: 481
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variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
all individuals: 4313
bin: 6.75e1
variant carriers: 2

GenotypeQuality
all individuals: 3664
bin: 9.75e1
variant carriers: 478

GenotypeQuality
all individuals: 182
bin: 8.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 48
allele frequency: 7.552632407086887e-4
allele num: 63554
num of homozygotes: 1

South Asian
type: Population
allele count: 1
allele frequency: 6.35970490969219e-5
allele num: 15724
num of homozygotes: 0

African
type: Population
allele count: 421
allele frequency: 4.588055797733217e-2
allele num: 9176
num of homozygotes: 8

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6446
num of homozygotes: 0

Other
type: Population
allele count: 4
allele frequency: 4.728132387706856e-3
allele num: 846
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8292
num of homozygotes: 0

Latino
type: Population
allele count: 20
allele frequency: 1.823154056517776e-3
allele num: 10970
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.535337e6

MQRankSum
type: SiteQuality
SIO_000300: 2.27e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.11e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.44e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -3.366e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.74e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.7e-2

QD
type: SiteQuality
SIO_000300: 1.315e1

GenotypeQuality
all individuals: 95
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 317
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 397
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4556
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6488
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64132
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9228
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11074
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8398
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.325110689437066e-5
allele num: 15810
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 854
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.93e1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.59e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.3e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 3.72e0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -8.958e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.01e-1

DP
type: SiteQuality
SIO_000300: 1.552236e6

MQRankSum
type: SiteQuality
SIO_000300: -5.16e-1

QD
type: SiteQuality
SIO_000300: 7.08e0

GenotypeQuality
all individuals: 147
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 102
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variant carriers: 0

GenotypeQuality
all individuals: 732
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.515978412467406e-5
allele num: 65964
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9594
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11428
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6570
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8580
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16306
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.360000000000001e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.04e-1

DP
type: SiteQuality
SIO_000300: 1.616501e6

VQSLOD
type: SiteQuality
SIO_000300: 9.0e-2

QD
type: SiteQuality
SIO_000300: 1.402e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -2.393e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 1.35e0

GenotypeQuality
all individuals: 652
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 127
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variant carriers: 0

GenotypeQuality
all individuals: 100
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47
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GenotypeQuality
all individuals: 6
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 3223
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 121
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GenotypeQuality
all individuals: 732
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variant carriers: 0

GenotypeQuality
all individuals: 188
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variant carriers: 0

GenotypeQuality
all individuals: 70
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variant carriers: 0

GenotypeQuality
all individuals: 48522
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.053635207942369e-5
allele num: 66076
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6568
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8588
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11446
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9620
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16344
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.05e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.68e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.0e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.25e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

MQ
type: SiteQuality
SIO_000300: 5.946e1

DP
type: SiteQuality
SIO_000300: 1.620043e6

VQSLOD
type: SiteQuality
SIO_000300: 1.73e0

FS
type: SiteQuality
SIO_000300: 4.54e0

QD
type: SiteQuality
SIO_000300: 1.109e1

GenotypeQuality
all individuals: 4909
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 96
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variant carriers: 0

GenotypeQuality
all individuals: 103
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variant carriers: 0

GenotypeQuality
all individuals: 40
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GenotypeQuality
all individuals: 3
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GenotypeQuality
all individuals: 740
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variant carriers: 0

GenotypeQuality
all individuals: 2
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GenotypeQuality
all individuals: 58
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GenotypeQuality
all individuals: 64
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GenotypeQuality
all individuals: 261
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GenotypeQuality
all individuals: 187
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GenotypeQuality
all individuals: 36
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GenotypeQuality
all individuals: 393
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GenotypeQuality
all individuals: 3221
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variant carriers: 1

GenotypeQuality
all individuals: 844
bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16364
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66152
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11456
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.163602513381429e-4
allele num: 8594
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6574
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9634
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.962e1

VQSLOD
type: SiteQuality
SIO_000300: 2.45e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.58e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.92e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.13e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.09e0

QD
type: SiteQuality
SIO_000300: 1.531e1

FS
type: SiteQuality
SIO_000300: 4.237e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

DP
type: SiteQuality
SIO_000300: 1.622176e6

GenotypeQuality
all individuals: 259
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 73
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variant carriers: 0

GenotypeQuality
all individuals: 476
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GenotypeQuality
all individuals: 7
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GenotypeQuality
all individuals: 40
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GenotypeQuality
all individuals: 27
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GenotypeQuality
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GenotypeQuality
all individuals: 38
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 394
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GenotypeQuality
all individuals: 43
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GenotypeQuality
all individuals: 4928
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variant carriers: 0

GenotypeQuality
all individuals: 187
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3223
bin: 9.75e1
variant carriers: 3

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.528028496392671e-5
allele num: 66254
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9658
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8594
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11474
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6584
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.41e-1

FS
type: SiteQuality
SIO_000300: 2.988e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.78e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.36e-1

DP
type: SiteQuality
SIO_000300: 1.625399e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

QD
type: SiteQuality
SIO_000300: 1.064e1

VQSLOD
type: SiteQuality
SIO_000300: 6.74e-1

MQRankSum
type: SiteQuality
SIO_000300: 9.9e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 59
bin: 3.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8594
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9664
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.509069507741527e-5
allele num: 66266
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11478
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16414
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.626095e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.459e0

VQSLOD
type: SiteQuality
SIO_000300: 1.98e0

BaseQRankSum
type: SiteQuality
SIO_000300: 8.37e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.285e1

MQRankSum
type: SiteQuality
SIO_000300: 5.86e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.06e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 5
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GenotypeQuality
all individuals: 36
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GenotypeQuality
all individuals: 44
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GenotypeQuality
all individuals: 73
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GenotypeQuality
all individuals: 747
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 188
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GenotypeQuality
all individuals: 3219
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variant carriers: 1

GenotypeQuality
all individuals: 48919
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11480
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9670
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.163873370577281e-4
allele num: 8592
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16428
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66254
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.8e-2

VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQ
type: SiteQuality
SIO_000300: 5.87e1

DP
type: SiteQuality
SIO_000300: 1.626799e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.245e0

QD
type: SiteQuality
SIO_000300: 8.51e0

FS
type: SiteQuality
SIO_000300: 1.39e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.95e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.16e-1

GenotypeQuality
all individuals: 30
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36
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GenotypeQuality
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GenotypeQuality
all individuals: 35
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GenotypeQuality
all individuals: 4940
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GenotypeQuality
all individuals: 61
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 9666
num of homozygotes: 0

Latino
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allele frequency: 8.710801393728223e-5
allele num: 11480
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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South Asian
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Other
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ReadPosRankSum
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DP
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VQSLOD
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ClippingRankSum
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BaseQRankSum
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MQ
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MQRankSum
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QD
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FS
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
allele num: 9656
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.511167528032158e-5
allele num: 66174
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6588
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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InbreedingCoeff
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MQRankSum
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BaseQRankSum
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ReadPosRankSum
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QD
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VQSLOD
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FS
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DP
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MQ
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele frequency: 6.099048548426445e-5
allele num: 16396
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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African
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allele count: 0
allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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Other
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East Asian
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allele frequency: 1.164144353899884e-4
allele num: 8590
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European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 66104
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InbreedingCoeff
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ClippingRankSum
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MQ
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MQRankSum
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ReadPosRankSum
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BaseQRankSum
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FS
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VQSLOD
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DP
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11424
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.517266492686776e-5
allele num: 65908
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6588
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African
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allele count: 0
allele frequency: 0.0e0
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BaseQRankSum
type: SiteQuality
SIO_000300: -5.474e0

VQSLOD
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ClippingRankSum
type: SiteQuality
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MQRankSum
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MQ
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 9.399999999999999e-1

InbreedingCoeff
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SIO_000300: -4.0e-4

ReadPosRankSum
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.408e1

DP
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6588
num of homozygotes: 0

Other
type: Population
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allele frequency: 1.121076233183856e-3
allele num: 892
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9532
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Latino
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allele count: 0
allele frequency: 0.0e0
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8572
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.519849230956289e-5
allele num: 65796
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.04e1

DP
type: SiteQuality
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ReadPosRankSum
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ClippingRankSum
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MQ
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SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
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MQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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FS
type: SiteQuality
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele frequency: 0.0e0
allele num: 16316
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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African
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.520450053215752e-5
allele num: 65770
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Latino
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East Asian
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QD
type: SiteQuality
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MQ
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BaseQRankSum
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VQSLOD
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ClippingRankSum
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ReadPosRankSum
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FS
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InbreedingCoeff
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MQRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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European (Non-Finnish)
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South Asian
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Other
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East Asian
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European (Finnish)
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Latino
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allele num: 11386
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QD
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FS
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MQRankSum
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ReadPosRankSum
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ClippingRankSum
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VQSLOD
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BaseQRankSum
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DP
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InbreedingCoeff
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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Latino
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East Asian
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African
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European (Finnish)
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Other
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European (Non-Finnish)
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FS
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MQRankSum
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QD
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DP
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BaseQRankSum
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InbreedingCoeff
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ReadPosRankSum
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VQSLOD
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MQ
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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European (Finnish)
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East Asian
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European (Non-Finnish)
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African
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Latino
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Other
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FS
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QD
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ClippingRankSum
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InbreedingCoeff
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DP
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BaseQRankSum
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VQSLOD
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MQ
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MQRankSum
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
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GenotypeQuality
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bin: 2.75e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6416
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.594184415253157e-5
allele num: 62728
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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African
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MQRankSum
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VQSLOD
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ReadPosRankSum
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QD
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DP
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FS
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InbreedingCoeff
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BaseQRankSum
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MQ
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 10868
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 1.593981127263453e-5
allele num: 62736
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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DP
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FS
type: SiteQuality
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InbreedingCoeff
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VQSLOD
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ClippingRankSum
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BaseQRankSum
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MQRankSum
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ReadPosRankSum
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MQ
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele frequency: 0.0e0
allele num: 10632
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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South Asian
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East Asian
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allele frequency: 1.242544731610338e-4
allele num: 8048
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Other
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FS
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QD
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VQSLOD
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ClippingRankSum
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InbreedingCoeff
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BaseQRankSum
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ReadPosRankSum
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MQRankSum
type: SiteQuality
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MQ
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele frequency: 0.0e0
allele num: 15150
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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African
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allele frequency: 1.126633618747183e-4
allele num: 8876
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 60344
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
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BaseQRankSum
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SIO_000300: 3.74e0

MQRankSum
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FS
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MQ
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ReadPosRankSum
type: SiteQuality
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QD
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DP
type: SiteQuality
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VQSLOD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.704855428259683e-5
allele num: 58656
num of homozygotes: 0

Other
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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VQSLOD
type: SiteQuality
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ReadPosRankSum
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MQRankSum
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FS
type: SiteQuality
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BaseQRankSum
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DP
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InbreedingCoeff
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ClippingRankSum
type: SiteQuality
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MQ
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QD
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 2

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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East Asian
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African
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allele num: 8568
num of homozygotes: 0

Latino
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allele num: 10124
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6114
num of homozygotes: 0

QD
type: SiteQuality
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InbreedingCoeff
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DP
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MQ
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BaseQRankSum
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ClippingRankSum
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FS
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VQSLOD
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MQRankSum
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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Latino
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South Asian
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European (Non-Finnish)
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African
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European (Finnish)
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Other
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FS
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BaseQRankSum
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MQ
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DP
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QD
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ClippingRankSum
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ReadPosRankSum
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VQSLOD
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MQRankSum
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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Latino
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Other
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European (Finnish)
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European (Non-Finnish)
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African
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South Asian
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MQRankSum
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ClippingRankSum
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MQ
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BaseQRankSum
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InbreedingCoeff
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FS
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QD
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ReadPosRankSum
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DP
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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European (Non-Finnish)
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Other
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East Asian
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South Asian
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African
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European (Finnish)
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FS
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ReadPosRankSum
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QD
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MQ
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ClippingRankSum
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MQRankSum
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VQSLOD
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BaseQRankSum
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InbreedingCoeff
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
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GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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bin: 8.75e1
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GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3857
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 162
bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.979257382630037e-5
allele num: 50524
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13510
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6618
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7616
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9180
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5488
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 716
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.01e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.02e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.22e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.22e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.500000000000001e-3

VQSLOD
type: SiteQuality
SIO_000300: -7.375e-1

QD
type: SiteQuality
SIO_000300: 1.246e1

FS
type: SiteQuality
SIO_000300: 2.687e0

DP
type: SiteQuality
SIO_000300: 1.088095e6

GenotypeQuality
all individuals: 2096
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3568
bin: 4.75e1
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GenotypeQuality
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bin: 8.75e1
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GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 724
bin: 6.75e1
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GenotypeQuality
all individuals: 6316
bin: 3.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 690
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8824
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.083767451552407e-5
allele num: 47990
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12982
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6206
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5264
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7284
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 6.63e0

VQSLOD
type: SiteQuality
SIO_000300: -8.56e-1

FS
type: SiteQuality
SIO_000300: 5.006e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.73e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.1e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.04e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.659e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.8e-3

DP
type: SiteQuality
SIO_000300: 1.077671e6

GenotypeQuality
all individuals: 3214
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2040
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 248
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GenotypeQuality
all individuals: 2556
bin: 4.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7318
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.077015743779338e-5
allele num: 48146
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 686
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5274
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8830
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13062
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6240
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.299999999999999e-3

FS
type: SiteQuality
SIO_000300: 1.028e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.09e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.27e-1

QD
type: SiteQuality
SIO_000300: 1.413e1

MQRankSum
type: SiteQuality
SIO_000300: -6.23e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.838e0

VQSLOD
type: SiteQuality
SIO_000300: 9.5e-2

DP
type: SiteQuality
SIO_000300: 1.07737e6

GenotypeQuality
all individuals: 2105
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 45
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variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.29643621710112e-5
allele num: 15882
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66266
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9782
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.477e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.0e0

MQRankSum
type: SiteQuality
SIO_000300: 7.86e-1

QD
type: SiteQuality
SIO_000300: 1.279e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.15e-2

DP
type: SiteQuality
SIO_000300: 1.957289e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.153e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.65e0

VQSLOD
type: SiteQuality
SIO_000300: -7.758e-1

MQ
type: SiteQuality
SIO_000300: 5.866e1

GenotypeQuality
all individuals: 338
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2109
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
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GenotypeQuality
all individuals: 370
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GenotypeQuality
all individuals: 2131
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15902
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 3.479471120389701e-4
allele num: 8622
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66278
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9782
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.6e0

MQRankSum
type: SiteQuality
SIO_000300: -2.4e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.72e-1

DP
type: SiteQuality
SIO_000300: 1.957911e6

FS
type: SiteQuality
SIO_000300: 9.389999999999999e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.39e-1

QD
type: SiteQuality
SIO_000300: 1.492e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.88e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.24e-2

MQ
type: SiteQuality
SIO_000300: 5.974e1

GenotypeQuality
all individuals: 998
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38050
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 555
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GenotypeQuality
all individuals: 50
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GenotypeQuality
all individuals: 2476
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variant carriers: 8

GenotypeQuality
all individuals: 297
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GenotypeQuality
all individuals: 2118
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GenotypeQuality
all individuals: 339
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 8
allele frequency: 1.207146306132303e-4
allele num: 66272
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9778
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15902
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.941e1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.201e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.89e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.0e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.12e-2

FS
type: SiteQuality
SIO_000300: 1.81e0

VQSLOD
type: SiteQuality
SIO_000300: 9.68e-1

QD
type: SiteQuality
SIO_000300: 1.255e1

DP
type: SiteQuality
SIO_000300: 1.965218e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.870000000000001e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2469
bin: 9.75e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15956
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9780
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.508159140952553e-5
allele num: 66306
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.3e-3

FS
type: SiteQuality
SIO_000300: 8.57e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.62e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -3.48e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.09e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.72e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.297e0

DP
type: SiteQuality
SIO_000300: 1.965968e6

QD
type: SiteQuality
SIO_000300: 1.391e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9780
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.522703973949225e-5
allele num: 66332
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.255473539346929e-5
allele num: 15986
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.57e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.85e0

QD
type: SiteQuality
SIO_000300: 1.133e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.23e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.0e-3

DP
type: SiteQuality
SIO_000300: 1.975304e6

MQRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 3.617e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.647e0

MQ
type: SiteQuality
SIO_000300: 5.956e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16090
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9782
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.507295309296997e-5
allele num: 66344
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.43e-1

DP
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: 9.66e-1

QD
type: SiteQuality
SIO_000300: 1.106e1

FS
type: SiteQuality
SIO_000300: 5.42e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.69e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.83e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.2e-3

MQRankSum
type: SiteQuality
SIO_000300: 6.48e-1

MQ
type: SiteQuality
SIO_000300: 5.977e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 310
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
variant carriers: 0

African
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Other
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 4.069697335101893e-4
allele num: 66344
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 1.511944360447536e-4
allele num: 6614
num of homozygotes: 0

ClippingRankSum
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QD
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BaseQRankSum
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DP
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FS
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InbreedingCoeff
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ReadPosRankSum
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MQRankSum
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VQSLOD
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MQ
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele frequency: 0.0e0
allele num: 8622
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African
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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South Asian
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allele frequency: 1.227747084100675e-4
allele num: 16290
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
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ReadPosRankSum
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VQSLOD
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BaseQRankSum
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DP
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MQ
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ClippingRankSum
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InbreedingCoeff
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FS
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QD
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MQRankSum
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SIO_000300: 7.000000000000001e-2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele num: 66482
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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European (Finnish)
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South Asian
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allele num: 16320
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Other
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QD
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FS
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MQRankSum
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ClippingRankSum
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InbreedingCoeff
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BaseQRankSum
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MQ
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SIO_000300: 5.956e1

DP
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VQSLOD
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 11

Latino
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allele frequency: 0.0e0
allele num: 11566
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South Asian
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European (Non-Finnish)
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allele num: 66512
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East Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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African
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Other
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DP
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FS
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QD
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VQSLOD
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InbreedingCoeff
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ClippingRankSum
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MQRankSum
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BaseQRankSum
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SIO_000300: -9.409999999999999e-1

MQ
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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African
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allele frequency: 4.142502071251035e-4
allele num: 9656
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South Asian
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European (Finnish)
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Latino
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East Asian
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European (Non-Finnish)
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allele frequency: 3.01568154402895e-5
allele num: 66320
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ClippingRankSum
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FS
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QD
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ReadPosRankSum
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InbreedingCoeff
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MQRankSum
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VQSLOD
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BaseQRankSum
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MQ
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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num of homozygotes: 0

South Asian
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Other
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European (Finnish)
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allele frequency: 0.0e0
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Latino
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East Asian
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European (Non-Finnish)
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QD
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MQRankSum
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InbreedingCoeff
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FS
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ReadPosRankSum
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BaseQRankSum
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MQ
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VQSLOD
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ClippingRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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Other
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Latino
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African
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European (Non-Finnish)
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European (Finnish)
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South Asian
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QD
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VQSLOD
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ReadPosRankSum
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MQ
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MQRankSum
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ClippingRankSum
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FS
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InbreedingCoeff
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DP
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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South Asian
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African
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European (Finnish)
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Latino
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Other
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European (Non-Finnish)
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ReadPosRankSum
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FS
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InbreedingCoeff
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QD
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BaseQRankSum
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ClippingRankSum
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VQSLOD
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MQ
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DP
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MQRankSum
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.503216884132043e-5
allele num: 66524
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9756
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

DP
type: SiteQuality
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BaseQRankSum
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MQ
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VQSLOD
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ReadPosRankSum
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SIO_000300: 1.21e0

QD
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SIO_000300: 1.361e1

ClippingRankSum
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SIO_000300: -6.11e-1

FS
type: SiteQuality
SIO_000300: 6.14e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.17e-1

InbreedingCoeff
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SIO_000300: -4.0e-4

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16490
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

European (Non-Finnish)
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allele count: 5
allele frequency: 7.516084420660213e-5
allele num: 66524
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.942e0

MQRankSum
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MQ
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SIO_000300: 5.762e1

ClippingRankSum
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DP
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InbreedingCoeff
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SIO_000300: -4.0e-4

ReadPosRankSum
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SIO_000300: -1.232e0

BaseQRankSum
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SIO_000300: -3.594e0

QD
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VQSLOD
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SIO_000300: 1.52e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66510
num of homozygotes: 0

East Asian
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allele count: 11
allele frequency: 1.276990944973299e-3
allele num: 8614
num of homozygotes: 0

South Asian
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allele count: 4
allele frequency: 2.425712553062462e-4
allele num: 16490
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 5.49e0

DP
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MQRankSum
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BaseQRankSum
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QD
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FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
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SIO_000300: 5.977e1

InbreedingCoeff
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SIO_000300: 4.9e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -2.15e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.54e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.503668952243474e-5
allele num: 66504
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9734
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8612
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.987464e6

VQSLOD
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MQRankSum
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SIO_000300: -2.94e-1

BaseQRankSum
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FS
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MQ
type: SiteQuality
SIO_000300: 5.972e1

InbreedingCoeff
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SIO_000300: 6.0e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 1.56e-1

QD
type: SiteQuality
SIO_000300: 1.27e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.84e-1

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66434
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8592
num of homozygotes: 0

African
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allele count: 2
allele frequency: 2.058036633052068e-4
allele num: 9718
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
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ClippingRankSum
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InbreedingCoeff
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QD
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VQSLOD
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ReadPosRankSum
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MQRankSum
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FS
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BaseQRankSum
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9722
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.505072092953252e-5
allele num: 66442
num of homozygotes: 0

Other
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

MQRankSum
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InbreedingCoeff
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QD
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VQSLOD
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MQ
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BaseQRankSum
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ReadPosRankSum
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FS
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DP
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ClippingRankSum
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 1

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66438
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8590
num of homozygotes: 0

African
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allele count: 1
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allele num: 9720
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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Other
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num of homozygotes: 0

European (Finnish)
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MQ
type: SiteQuality
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ClippingRankSum
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InbreedingCoeff
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DP
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MQRankSum
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FS
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QD
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VQSLOD
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BaseQRankSum
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ReadPosRankSum
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 1

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.506160195198361e-5
allele num: 66394
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

InbreedingCoeff
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SIO_000300: -3.0e-4

FS
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QD
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ClippingRankSum
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ReadPosRankSum
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BaseQRankSum
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MQ
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MQRankSum
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VQSLOD
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DP
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SIO_000300: 1.981783e6

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 1.171508903467666e-4
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

VQSLOD
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QD
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InbreedingCoeff
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MQ
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FS
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MQRankSum
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BaseQRankSum
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DP
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SIO_000300: 1.975857e6

ClippingRankSum
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SIO_000300: -1.382e0

ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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num of homozygotes: 0

Other
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 66208
num of homozygotes: 0

Latino
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ClippingRankSum
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SIO_000300: -6.19e-1

QD
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DP
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InbreedingCoeff
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BaseQRankSum
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MQ
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VQSLOD
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ReadPosRankSum
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FS
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MQRankSum
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SIO_000300: -1.17e-1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8520
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.511213201958532e-5
allele num: 66172
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Latino
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allele frequency: 8.667013347200555e-5
allele num: 11538
num of homozygotes: 0

African
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allele frequency: 1.136833402232327e-3
allele num: 9676
num of homozygotes: 0

Other
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South Asian
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DP
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SIO_000300: 1.973245e6

ReadPosRankSum
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MQ
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FS
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InbreedingCoeff
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MQRankSum
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BaseQRankSum
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QD
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ClippingRankSum
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SIO_000300: -3.6e-2

VQSLOD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele frequency: 6.070171178827243e-5
allele num: 16474
num of homozygotes: 0

African
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East Asian
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European (Non-Finnish)
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European (Finnish)
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Latino
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Other
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FS
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MQRankSum
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ClippingRankSum
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InbreedingCoeff
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BaseQRankSum
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VQSLOD
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QD
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DP
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ReadPosRankSum
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MQ
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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num of homozygotes: 0

South Asian
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European (Non-Finnish)
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Other
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Latino
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European (Finnish)
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East Asian
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MQ
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VQSLOD
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QD
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BaseQRankSum
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FS
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InbreedingCoeff
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ClippingRankSum
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MQRankSum
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DP
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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European (Non-Finnish)
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European (Finnish)
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Latino
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African
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Other
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South Asian
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BaseQRankSum
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InbreedingCoeff
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FS
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DP
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MQ
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QD
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VQSLOD
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ClippingRankSum
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MQRankSum
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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European (Non-Finnish)
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allele frequency: 1.519618271890101e-5
allele num: 65806
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11502
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9634
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16474
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.118e0

DP
type: SiteQuality
SIO_000300: 1.955429e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.3e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -7.149e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.69e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.536e0

QD
type: SiteQuality
SIO_000300: 1.573e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.74e-1

GenotypeDepth
all individuals: 93
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 801
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 268
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 455
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 38152
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2122
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2382
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 156
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 104
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 268
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 98
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10522
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 216
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2273
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 2118
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 977
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 322
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 104
bin: 5.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.051292222256126e-5
allele num: 65546
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9602
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.729050279329609e-5
allele num: 11456
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8342
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16460
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 9.78e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.75e0

DP
type: SiteQuality
SIO_000300: 1.937696e6

MQRankSum
type: SiteQuality
SIO_000300: 1.8e-2

FS
type: SiteQuality
SIO_000300: 1.772e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.8e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -9.75e-1

QD
type: SiteQuality
SIO_000300: 1.406e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.26e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeDepth
all individuals: 430
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 269
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 16357
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8342
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1596
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 144
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1720
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30803
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 767
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 285
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 786
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2229
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 121
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 96
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 801
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1691
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 275
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8432
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 413
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1694
bin: 3.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6492
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9288
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16276
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63630
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.243781094527363e-4
allele num: 8040
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11100
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.5e-1

FS
type: SiteQuality
SIO_000300: 9.961e0

VQSLOD
type: SiteQuality
SIO_000300: -2.175e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.6e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 1.13e0

MQ
type: SiteQuality
SIO_000300: 5.904e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.37e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.637e0

DP
type: SiteQuality
SIO_000300: 1.791052e6

QD
type: SiteQuality
SIO_000300: 6.04e0