3-52312388-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52312388
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 52312388
    reference: chr 3
allele count: 1
allele frequency: 1.288792659037014e-5
allele num: 77592
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000164091
  ensembl protein: ENSP00000296490
  ensembl transcript: ENST00000296490
  gene symbol: WDR82
  hgvsc: ENST00000296490.3:c.-11C>T
  variant of: http://identifiers.org/hgnc/28826
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164091
  ensembl protein: ENSP00000417313
  ensembl transcript: ENST00000463624
  gene symbol: WDR82
  hgvsc: ENST00000463624.1:c.-182+6156C>T
  variant of: http://identifiers.org/hgnc/28826
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3173
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 11
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num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 1
  allele frequency: 1.797268152408339e-4
  allele num: 5564
  num of homozygotes: 0
population: South Asian
population: Latino
population: Other
population: African
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: FS
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum

3-52312389-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52312389
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 52312389
    reference: chr 3
allele count: 1
allele frequency: 1.290822253775655e-5
allele num: 77470
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164091
  ensembl protein: ENSP00000417313
  ensembl transcript: ENST00000463624
  gene symbol: WDR82
  hgvsc: ENST00000463624.1:c.-182+6155C>T
  variant of: http://identifiers.org/hgnc/28826
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000164091
  ensembl protein: ENSP00000296490
  ensembl transcript: ENST00000296490
  gene symbol: WDR82
  hgvsc: ENST00000296490.3:c.-12C>T
  variant of: http://identifiers.org/hgnc/28826
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3164
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 7248
  num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
population: European (Finnish)
reference allele: G
site quality: FS
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum

3-52312391-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52312391
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 52312391
    reference: chr 3
allele count: 4
allele frequency: 5.571341021783943e-5
allele num: 71796
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164091
  ensembl protein: ENSP00000417313
  ensembl transcript: ENST00000463624
  gene symbol: WDR82
  hgvsc: ENST00000463624.1:c.-182+6153C>T
  variant of: http://identifiers.org/hgnc/28826
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000164091
  ensembl protein: ENSP00000296490
  ensembl transcript: ENST00000296490
  gene symbol: WDR82
  hgvsc: ENST00000296490.3:c.-14C>T
  variant of: http://identifiers.org/hgnc/28826
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 5086
  num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Latino
population: Other
population: African
reference allele: G
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum

3-52312393-A-AGGCAGCGGCGGCGCAG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52312393
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 52312409
    reference: chr 3
allele count: 2
allele frequency: 2.869193469715663e-5
allele num: 69706
alternate allele: AGGCAGCGGCGGCGCAG
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164091
  ensembl protein: ENSP00000417313
  ensembl transcript: ENST00000463624
  gene symbol: WDR82
  variant of: http://identifiers.org/hgnc/28826
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000164091
  ensembl protein: ENSP00000296490
  ensembl transcript: ENST00000296490
  gene symbol: WDR82
  variant of: http://identifiers.org/hgnc/28826
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 4918
  num of homozygotes: 0
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
reference allele: A
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum

3-52312394-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52312394
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 52312394
    reference: chr 3
allele count: 2
allele frequency: 3.217399697564428e-5
allele num: 62162
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000164091
  ensembl protein: ENSP00000296490
  ensembl transcript: ENST00000296490
  gene symbol: WDR82
  hgvsc: ENST00000296490.3:c.-17C>T
  variant of: http://identifiers.org/hgnc/28826
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164091
  ensembl protein: ENSP00000417313
  ensembl transcript: ENST00000463624
  gene symbol: WDR82
  hgvsc: ENST00000463624.1:c.-182+6150C>T
  variant of: http://identifiers.org/hgnc/28826
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11779
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 7.25e1
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 2.5e0
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genotype quality: GenotypeQuality
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  bin: 3.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 2.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 9.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 172
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
  type: Population
  allele count: 1
  allele frequency: 1.797914419273643e-4
  allele num: 5562
  num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: South Asian
population: European (Finnish)
population: African
population: East Asian
reference allele: G
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP

3-52312397-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52312397
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 52312397
    reference: chr 3
allele count: 4
allele frequency: 6.716367788300088e-5
allele num: 59556
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000164091
  ensembl protein: ENSP00000296490
  ensembl transcript: ENST00000296490
  gene symbol: WDR82
  hgvsc: ENST00000296490.3:c.-20T>C
  variant of: http://identifiers.org/hgnc/28826
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164091
  ensembl protein: ENSP00000417313
  ensembl transcript: ENST00000463624
  gene symbol: WDR82
  hgvsc: ENST00000463624.1:c.-182+6147T>C
  variant of: http://identifiers.org/hgnc/28826
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 21282
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.25e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 5188
  num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: African
population: South Asian
reference allele: A
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: DP

3-52312398-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52312398
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 52312398
    reference: chr 3
allele count: 1
allele frequency: 1.717740827263983e-5
allele num: 58216
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000164091
  ensembl protein: ENSP00000296490
  ensembl transcript: ENST00000296490
  gene symbol: WDR82
  hgvsc: ENST00000296490.3:c.-21C>T
  variant of: http://identifiers.org/hgnc/28826
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164091
  ensembl protein: ENSP00000417313
  ensembl transcript: ENST00000463624
  gene symbol: WDR82
  hgvsc: ENST00000463624.1:c.-182+6146C>T
  variant of: http://identifiers.org/hgnc/28826
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 11716
  num of homozygotes: 0
population: Latino
population: European (Finnish)
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: QD

3-52312402-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52312402
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 52312402
    reference: chr 3
allele count: 1
allele frequency: 2.177036617755911e-5
allele num: 45934
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000164091
  ensembl protein: ENSP00000296490
  ensembl transcript: ENST00000296490
  gene symbol: WDR82
  hgvsc: ENST00000296490.3:c.-25G>C
  variant of: http://identifiers.org/hgnc/28826
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164091
  ensembl protein: ENSP00000417313
  ensembl transcript: ENST00000463624
  gene symbol: WDR82
  hgvsc: ENST00000463624.1:c.-182+6142G>C
  variant of: http://identifiers.org/hgnc/28826
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1439
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 3124
  num of homozygotes: 0
population: Other
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Latino
population: East Asian
reference allele: C
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: ReadPosRankSum

3-52312403-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52312403
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 52312403
    reference: chr 3
allele count: 2
allele frequency: 4.365096686891614e-5
allele num: 45818
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164091
  ensembl protein: ENSP00000417313
  ensembl transcript: ENST00000463624
  gene symbol: WDR82
  hgvsc: ENST00000463624.1:c.-182+6141C>T
  variant of: http://identifiers.org/hgnc/28826
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000164091
  ensembl protein: ENSP00000296490
  ensembl transcript: ENST00000296490
  gene symbol: WDR82
  hgvsc: ENST00000296490.3:c.-26C>T
  variant of: http://identifiers.org/hgnc/28826
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1700
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.25e1
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genotype quality: GenotypeQuality
  all individuals: 65
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 5.75e1
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genotype quality: GenotypeQuality
  all individuals: 200
  bin: 3.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 1.75e1
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genotype quality: GenotypeQuality
  all individuals: 200
  bin: 7.25e1
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genotype quality: GenotypeQuality
  all individuals: 11
  bin: 8.75e1
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genotype quality: GenotypeQuality
  all individuals: 4407
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 917
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 22644
  num of homozygotes: 0
population: East Asian
population: Other
population: Latino
population: African
population: European (Finnish)
population: South Asian
reference allele: G
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum

3-52312408-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52312408
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 52312408
    reference: chr 3
allele count: 2
allele frequency: 5.858917272088118e-5
allele num: 34136
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000164091
  ensembl protein: ENSP00000296490
  ensembl transcript: ENST00000296490
  gene symbol: WDR82
  hgvsc: ENST00000296490.3:c.-31T>C
  variant of: http://identifiers.org/hgnc/28826
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164091
  ensembl protein: ENSP00000417313
  ensembl transcript: ENST00000463624
  gene symbol: WDR82
  hgvsc: ENST00000463624.1:c.-182+6136T>C
  variant of: http://identifiers.org/hgnc/28826
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1281
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 2
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 3
num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 1
  allele frequency: 6.381620931716656e-5
  allele num: 15670
  num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
reference allele: A
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: MQ

http://identifiers.org/exac.variant/3-52312423-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52312423
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 52312423
    reference: chr 3
allele count: 0
allele frequency: 0.0e0
allele num: 12218
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164091
  ensembl protein: ENSP00000417313
  ensembl transcript: ENST00000463624
  gene symbol: WDR82
  hgvsc: ENST00000463624.1:c.-182+6121G>T
  variant of: http://identifiers.org/hgnc/28826
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000164091
  ensembl protein: ENSP00000296490
  ensembl transcript: ENST00000296490
  gene symbol: WDR82
  hgvsc: ENST00000296490.3:c.-46G>T
  variant of: http://identifiers.org/hgnc/28826
canonical: true
consequence: 5' UTR
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 1513
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14080
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 262
  num of homozygotes: 0
population: Other
population: African
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Latino
reference allele: C
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
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site quality: MQ

3-52321123-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52321123
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 52321123
    reference: chr 3
allele count: 1
allele frequency: 1.112347052280312e-4
allele num: 8990
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164091
  ensembl protein: ENSP00000417313
  ensembl transcript: ENST00000463624
  gene symbol: WDR82
  hgvsc: ENST00000463624.1:c.-246+726A>C
  variant of: http://identifiers.org/hgnc/28826
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000417264
  ensembl transcript: ENST00000461183
  gene symbol: GLYCTK
  hgvsc: ENST00000461183.1:c.14T>G
  hgvsp: ENSP00000417264.1:p.Leu5Arg
  variant of: http://identifiers.org/hgnc/24247
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1845
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Leu5Arg
num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 160
  num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: T
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
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site quality: DP

3-52321124-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52321124
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 52321124
    reference: chr 3
allele count: 1
allele frequency: 1.090037061260083e-4
allele num: 9174
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164091
  ensembl protein: ENSP00000417313
  ensembl transcript: ENST00000463624
  gene symbol: WDR82
  hgvsc: ENST00000463624.1:c.-246+725T>C
  variant of: http://identifiers.org/hgnc/28826
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000417264
  ensembl transcript: ENST00000461183
  gene symbol: GLYCTK
  hgvsc: ENST00000461183.1:c.15A>G
  hgvsp: ENST00000461183.1:c.15A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24247
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
  all individuals: 150
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Leu5Leu
num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 96
  num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
population: South Asian
population: East Asian
reference allele: A
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum

3-52321146-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52321146
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 52321146
    reference: chr 3
allele count: 34
allele frequency: 3.057553956834532e-3
allele num: 11120
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164091
  ensembl protein: ENSP00000417313
  ensembl transcript: ENST00000463624
  gene symbol: WDR82
  hgvsc: ENST00000463624.1:c.-246+703G>A
  variant of: http://identifiers.org/hgnc/28826
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000417264
  ensembl transcript: ENST00000461183
  gene symbol: GLYCTK
  hgvsc: ENST00000461183.1:c.37C>T
  hgvsp: ENSP00000417264.1:p.Pro13Ser
  variant of: http://identifiers.org/hgnc/24247
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1156
  bin: 2.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 808
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2516
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3362
  bin: 2.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 1.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 135
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 253
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3431
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 234
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 591
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 9.75e1
  variant carriers: 32
genotype quality: GenotypeQuality
  all individuals: 2309
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 787
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 230
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Pro13Ser
num of homozygotes: 1
population: European (Non-Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 3234
  num of homozygotes: 0
population: Other
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum

3-52321182-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52321182
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 52321182
    reference: chr 3
allele count: 11
allele frequency: 8.981058131939908e-4
allele num: 12248
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000417264
  ensembl transcript: ENST00000461183
  gene symbol: GLYCTK
  hgvsc: ENST00000461183.1:c.73G>A
  hgvsp: ENSP00000417264.1:p.Gly25Arg
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164091
  ensembl protein: ENSP00000417313
  ensembl transcript: ENST00000463624
  gene symbol: WDR82
  hgvsc: ENST00000463624.1:c.-246+667C>T
  variant of: http://identifiers.org/hgnc/28826
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3670
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 648
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2365
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1559
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 343
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 784
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2175
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 304
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 206
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 178
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 9.75e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 4242
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 1.75e1
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genotype quality: GenotypeQuality
  all individuals: 64
  bin: 8.75e1
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genotype quality: GenotypeQuality
  all individuals: 39
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 201
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Gly25Arg
num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 2
  num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum

3-52321192-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52321192
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 52321192
    reference: chr 3
allele count: 1
allele frequency: 8.136696501220504e-5
allele num: 12290
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000417264
  ensembl transcript: ENST00000461183
  gene symbol: GLYCTK
  hgvsc: ENST00000461183.1:c.83C>G
  hgvsp: ENSP00000417264.1:p.Ala28Gly
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164091
  ensembl protein: ENSP00000417313
  ensembl transcript: ENST00000463624
  gene symbol: WDR82
  hgvsc: ENST00000463624.1:c.-246+657G>C
  variant of: http://identifiers.org/hgnc/28826
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1575
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3679
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2332
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 658
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 208
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 142
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2133
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 9.25e1
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genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.75e1
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genotype quality: GenotypeQuality
  all individuals: 791
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genotype quality: GenotypeQuality
  all individuals: 4271
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genotype quality: GenotypeQuality
  all individuals: 203
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genotype quality: GenotypeQuality
  all individuals: 305
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 345
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Ala28Gly
num of homozygotes: 0
population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 560
  num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum

3-52321202-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52321202
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 52321202
    reference: chr 3
allele count: 222
allele frequency: 1.804878048780488e-2
allele num: 12300
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164091
  ensembl protein: ENSP00000417313
  ensembl transcript: ENST00000463624
  gene symbol: WDR82
  hgvsc: ENST00000463624.1:c.-246+647C>T
  variant of: http://identifiers.org/hgnc/28826
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000417264
  ensembl transcript: ENST00000461183
  gene symbol: GLYCTK
  hgvsc: ENST00000461183.1:c.93G>A
  hgvsp: ENST00000461183.1:c.93G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24247
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 4.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 1541
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 6.25e1
  variant carriers: 38
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 3546
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 7.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2283
  bin: 2.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 3.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
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  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 5.75e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 5.25e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 645
  bin: 3.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 4.75e1
  variant carriers: 32
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2061
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 331
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 294
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 6.25e1
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genotype quality: GenotypeQuality
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  variant carriers: 3
genotype quality: GenotypeQuality
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  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 768
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 298
  bin: 9.75e1
  variant carriers: 220
genotype quality: GenotypeQuality
  all individuals: 199
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 220
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 2.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 1.25e1
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genotype quality: GenotypeQuality
  all individuals: 62
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Arg31Arg
num of homozygotes: 3
population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 560
  num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: South Asian
population: East Asian
population: European (Finnish)
population: Latino
reference allele: G
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum

3-52321788-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52321788
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 52321788
    reference: chr 3
allele count: 272
allele frequency: 2.582605393087732e-2
allele num: 10532
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164091
  ensembl protein: ENSP00000417313
  ensembl transcript: ENST00000463624
  gene symbol: WDR82
  hgvsc: ENST00000463624.1:c.-246+61G>A
  variant of: http://identifiers.org/hgnc/28826
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000417264
  ensembl transcript: ENST00000461183
  gene symbol: GLYCTK
  hgvsc: ENST00000461183.1:c.125+554C>T
  variant of: http://identifiers.org/hgnc/24247
canonical: false
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 5.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 7011
  bin: 2.5e0
  variant carriers: 33
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 7.5e0
  variant carriers: 14
genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 1.75e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 4.75e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 4.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 3.75e1
  variant carriers: 42
genotype depth: GenotypeDepth
  all individuals: 1077
  bin: 3.25e1
  variant carriers: 48
genotype depth: GenotypeDepth
  all individuals: 1113
  bin: 2.25e1
  variant carriers: 38
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 5.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 1.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2225
  bin: 2.75e1
  variant carriers: 52
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 135
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 862
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 345
  bin: 9.75e1
  variant carriers: 264
genotype quality: GenotypeQuality
  all individuals: 284
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 135
  bin: 2.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 9.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 5072
  bin: 7.5e0
  variant carriers: 27
genotype quality: GenotypeQuality
  all individuals: 2746
  bin: 6.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 5.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 1.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 1930
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 4.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 271
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 3.75e1
  variant carriers: 1
num of homozygotes: 4
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 92
  num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: African
population: South Asian
population: Other
reference allele: C
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum

3-52321789-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52321789
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 52321789
    reference: chr 3
allele count: 0
allele frequency: 0.0e0
allele num: 10536
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000417264
  ensembl transcript: ENST00000461183
  gene symbol: GLYCTK
  hgvsc: ENST00000461183.1:c.125+555C>T
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164091
  ensembl protein: ENSP00000417313
  ensembl transcript: ENST00000463624
  gene symbol: WDR82
  hgvsc: ENST00000463624.1:c.-246+60G>A
  variant of: http://identifiers.org/hgnc/28826
canonical: false
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7067
  bin: 2.5e0
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genotype depth: GenotypeDepth
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  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
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genotype depth: GenotypeDepth
  all individuals: 18
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genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1126
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genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
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genotype depth: GenotypeDepth
  all individuals: 170
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  variant carriers: 3
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1087
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 292
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genotype quality: GenotypeQuality
  all individuals: 2850
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 102
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genotype quality: GenotypeQuality
  all individuals: 33
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genotype quality: GenotypeQuality
  all individuals: 95
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genotype quality: GenotypeQuality
  all individuals: 5417
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 913
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 58
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 291
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genotype quality: GenotypeQuality
  all individuals: 61
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  variant carriers: 0
num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 7340
  num of homozygotes: 0
population: Latino
population: Other
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP

http://identifiers.org/exac.variant/3-52321809-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52321809
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 52321809
    reference: chr 3
allele count: 72
allele frequency: 6.840205206156184e-3
allele num: 10526
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164091
  ensembl protein: ENSP00000417313
  ensembl transcript: ENST00000463624
  gene symbol: WDR82
  hgvsc: ENST00000463624.1:c.-246+40T>G
  variant of: http://identifiers.org/hgnc/28826
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000417264
  ensembl transcript: ENST00000461183
  gene symbol: GLYCTK
  hgvsc: ENST00000461183.1:c.125+575A>C
  variant of: http://identifiers.org/hgnc/24247
canonical: false
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1102
  bin: 3.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 5.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 58
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genotype depth: GenotypeDepth
  all individuals: 5259
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genotype depth: GenotypeDepth
  all individuals: 142
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  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 152
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 19
  bin: 4.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 237
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genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
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genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1194
  bin: 2.25e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
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genotype depth: GenotypeDepth
  all individuals: 1
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genotype depth: GenotypeDepth
  all individuals: 6
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 0
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 4.75e1
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genotype quality: GenotypeQuality
  all individuals: 46
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 57
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  variant carriers: 2
num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 39
  allele frequency: 5.316248636859324e-3
  allele num: 7336
  num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: African
population: European (Finnish)
reference allele: A
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum

3-52321816-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52321816
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 52321816
    reference: chr 3
allele count: 3
allele frequency: 2.847380410022779e-4
allele num: 10536
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000417264
  ensembl transcript: ENST00000461183
  gene symbol: GLYCTK
  hgvsc: ENST00000461183.1:c.125+582C>T
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164091
  ensembl protein: ENSP00000417313
  ensembl transcript: ENST00000463624
  gene symbol: WDR82
  hgvsc: ENST00000463624.1:c.-246+33G>A
  variant of: http://identifiers.org/hgnc/28826
canonical: false
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
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genotype depth: GenotypeDepth
  all individuals: 226
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genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4211
  bin: 2.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 2
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 9.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 74
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num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 92
  num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
reference allele: C
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum

3-52321843-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52321843
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 52321843
    reference: chr 3
allele count: 1
allele frequency: 9.453582907922102e-5
allele num: 10578
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000301965
  ensembl transcript: ENST00000305690
  gene symbol: GLYCTK
  hgvsc: ENST00000305690.8:c.-89T>C
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000418951
  ensembl transcript: ENST00000473032
  gene symbol: GLYCTK
  hgvsc: ENST00000473032.1:c.-89T>C
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000346825
  ensembl transcript: ENST00000354773
  gene symbol: GLYCTK
  hgvsc: ENST00000354773.4:c.-89T>C
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164091
  ensembl protein: ENSP00000417313
  ensembl transcript: ENST00000463624
  gene symbol: WDR82
  hgvsc: ENST00000463624.1:c.-246+6A>G
  variant of: http://identifiers.org/hgnc/28826
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000417264
  ensembl transcript: ENST00000461183
  gene symbol: GLYCTK
  hgvsc: ENST00000461183.1:c.125+609T>C
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000419868
  ensembl transcript: ENST00000486393
  gene symbol: GLYCTK
  hgvsc: ENST00000486393.1:c.-89T>C
  variant of: http://identifiers.org/hgnc/24247
canonical: false
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1228
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1134
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2549
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3490
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.75e1
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genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 9.25e1
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genotype quality: GenotypeQuality
  all individuals: 254
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 160
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.75e1
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genotype quality: GenotypeQuality
  all individuals: 52
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 347
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3141
  bin: 7.5e0
  variant carriers: 0
hgvs: c.-246+6A>G
num of homozygotes: 0
population: Latino
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
reference allele: T
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum

3-52321845-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52321845
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 52321845
    reference: chr 3
allele count: 1
allele frequency: 9.455370650529501e-5
allele num: 10576
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000346825
  ensembl transcript: ENST00000354773
  gene symbol: GLYCTK
  hgvsc: ENST00000354773.4:c.-87G>A
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000418951
  ensembl transcript: ENST00000473032
  gene symbol: GLYCTK
  hgvsc: ENST00000473032.1:c.-87G>A
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000419868
  ensembl transcript: ENST00000486393
  gene symbol: GLYCTK
  hgvsc: ENST00000486393.1:c.-87G>A
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164091
  ensembl protein: ENSP00000417313
  ensembl transcript: ENST00000463624
  gene symbol: WDR82
  hgvsc: ENST00000463624.1:c.-246+4C>T
  variant of: http://identifiers.org/hgnc/28826
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000417264
  ensembl transcript: ENST00000461183
  gene symbol: GLYCTK
  hgvsc: ENST00000461183.1:c.125+611G>A
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000301965
  ensembl transcript: ENST00000305690
  gene symbol: GLYCTK
  hgvsc: ENST00000305690.8:c.-87G>A
  variant of: http://identifiers.org/hgnc/24247
canonical: false
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1134
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1229
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3446
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 7.5e0
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genotype depth: GenotypeDepth
  all individuals: 2556
  bin: 2.75e1
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genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 1.25e1
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genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 915
  bin: 6.75e1
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genotype quality: GenotypeQuality
  all individuals: 3535
  bin: 6.25e1
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genotype quality: GenotypeQuality
  all individuals: 3119
  bin: 7.5e0
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genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.75e1
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genotype quality: GenotypeQuality
  all individuals: 253
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.75e1
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genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 9.25e1
  variant carriers: 0
hgvs: c.-246+4C>T
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
population: European (Finnish)
reference allele: G
site quality: MQ
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum

http://identifiers.org/exac.variant/3-52321858-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52321858
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 52321858
    reference: chr 3
allele count: 2
allele frequency: 1.888574126534466e-4
allele num: 10590
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000419868
  ensembl transcript: ENST00000486393
  gene symbol: GLYCTK
  hgvsc: ENST00000486393.1:c.-74C>A
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000301965
  ensembl transcript: ENST00000305690
  gene symbol: GLYCTK
  hgvsc: ENST00000305690.8:c.-74C>A
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000418951
  ensembl transcript: ENST00000473032
  gene symbol: GLYCTK
  hgvsc: ENST00000473032.1:c.-74C>A
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000164091
  ensembl protein: ENSP00000417313
  ensembl transcript: ENST00000463624
  gene symbol: WDR82
  hgvsc: ENST00000463624.1:c.-255G>T
  variant of: http://identifiers.org/hgnc/28826
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000417264
  ensembl transcript: ENST00000461183
  gene symbol: GLYCTK
  hgvsc: ENST00000461183.1:c.125+624C>A
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000417526
  ensembl transcript: ENST00000471180
  gene symbol: GLYCTK
  hgvsc: ENST00000471180.1:c.-39C>A
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000346825
  ensembl transcript: ENST00000354773
  gene symbol: GLYCTK
  hgvsc: ENST00000354773.4:c.-74C>A
  variant of: http://identifiers.org/hgnc/24247
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1139
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2574
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1219
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3101
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2771
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3543
  bin: 6.25e1
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genotype quality: GenotypeQuality
  all individuals: 235
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.75e1
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genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 328
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genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
reference allele: C
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD

3-52321863-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52321863
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 52321863
    reference: chr 3
allele count: 7
allele frequency: 6.607513686992637e-4
allele num: 10594
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000346825
  ensembl transcript: ENST00000354773
  gene symbol: GLYCTK
  hgvsc: ENST00000354773.4:c.-69G>A
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000417264
  ensembl transcript: ENST00000461183
  gene symbol: GLYCTK
  hgvsc: ENST00000461183.1:c.125+629G>A
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000164091
  ensembl protein: ENSP00000417313
  ensembl transcript: ENST00000463624
  gene symbol: WDR82
  hgvsc: ENST00000463624.1:c.-260C>T
  variant of: http://identifiers.org/hgnc/28826
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000419868
  ensembl transcript: ENST00000486393
  gene symbol: GLYCTK
  hgvsc: ENST00000486393.1:c.-69G>A
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000417526
  ensembl transcript: ENST00000471180
  gene symbol: GLYCTK
  hgvsc: ENST00000471180.1:c.-34G>A
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000301965
  ensembl transcript: ENST00000305690
  gene symbol: GLYCTK
  hgvsc: ENST00000305690.8:c.-69G>A
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000418951
  ensembl transcript: ENST00000473032
  gene symbol: GLYCTK
  hgvsc: ENST00000473032.1:c.-69G>A
  variant of: http://identifiers.org/hgnc/24247
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2577
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1137
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1217
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2920
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 347
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 9.25e1
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genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 249
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 148
  bin: 2.25e1
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genotype quality: GenotypeQuality
  all individuals: 78
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 2575
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: MQ

3-52321890-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52321890
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 52321890
    reference: chr 3
allele count: 4
allele frequency: 3.791469194312796e-4
allele num: 10550
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000301965
  ensembl transcript: ENST00000305690
  gene symbol: GLYCTK
  hgvsc: ENST00000305690.8:c.-42C>T
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000417526
  ensembl transcript: ENST00000471180
  gene symbol: GLYCTK
  hgvsc: ENST00000471180.1:c.-7C>T
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000164091
  ensembl protein: ENSP00000417313
  ensembl transcript: ENST00000463624
  gene symbol: WDR82
  hgvsc: ENST00000463624.1:c.-287G>A
  variant of: http://identifiers.org/hgnc/28826
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000417264
  ensembl transcript: ENST00000461183
  gene symbol: GLYCTK
  hgvsc: ENST00000461183.1:c.125+656C>T
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000418951
  ensembl transcript: ENST00000473032
  gene symbol: GLYCTK
  hgvsc: ENST00000473032.1:c.-42C>T
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: 5_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000419868
  ensembl transcript: ENST00000486393
  gene symbol: GLYCTK
  hgvsc: ENST00000486393.1:c.-42C>T
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000346825
  ensembl transcript: ENST00000354773
  gene symbol: GLYCTK
  hgvsc: ENST00000354773.4:c.-42C>T
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000389175
  ensembl transcript: ENST00000436784
  gene symbol: GLYCTK
  hgvsc: ENST00000436784.2:c.-42C>T
  variant of: http://identifiers.org/hgnc/24247
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2597
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1137
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2701
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1100
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3464
  bin: 6.25e1
  variant carriers: 0
hgvs: c.-42C>T
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
population: Latino
population: Other
population: East Asian
reference allele: C
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: QD

3-52321893-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52321893
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 52321893
    reference: chr 3
allele count: 1
allele frequency: 9.498480243161094e-5
allele num: 10528
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000301965
  ensembl transcript: ENST00000305690
  gene symbol: GLYCTK
  hgvsc: ENST00000305690.8:c.-40+1G>C
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000164091
  ensembl protein: ENSP00000417313
  ensembl transcript: ENST00000463624
  gene symbol: WDR82
  hgvsc: ENST00000463624.1:c.-290C>G
  variant of: http://identifiers.org/hgnc/28826
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000346825
  ensembl transcript: ENST00000354773
  gene symbol: GLYCTK
  hgvsc: ENST00000354773.4:c.-40+1G>C
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000417264
  ensembl transcript: ENST00000461183
  gene symbol: GLYCTK
  hgvsc: ENST00000461183.1:c.125+659G>C
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000418951
  ensembl transcript: ENST00000473032
  gene symbol: GLYCTK
  hgvsc: ENST00000473032.1:c.-40+1G>C
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000419868
  ensembl transcript: ENST00000486393
  gene symbol: GLYCTK
  hgvsc: ENST00000486393.1:c.-40+1G>C
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: true
  consequence: splice_donor_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000389175
  ensembl transcript: ENST00000436784
  gene symbol: GLYCTK
  hgvsc: ENST00000436784.2:c.-40+1G>C
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000417526
  ensembl transcript: ENST00000471180
  gene symbol: GLYCTK
  hgvsc: ENST00000471180.1:c.-5+1G>C
  variant of: http://identifiers.org/hgnc/24247
canonical: true
consequence: splice donor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1064
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1139
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2721
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2569
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 362
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2358
  bin: 7.5e0
  variant carriers: 0
hgvs: c.-40+1G>C
num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

3-52321908-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52321908
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 52321908
    reference: chr 3
allele count: 1
allele frequency: 9.671179883945841e-5
allele num: 10340
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000164091
  ensembl protein: ENSP00000417313
  ensembl transcript: ENST00000463624
  gene symbol: WDR82
  hgvsc: ENST00000463624.1:c.-305G>C
  variant of: http://identifiers.org/hgnc/28826
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000417264
  ensembl transcript: ENST00000461183
  gene symbol: GLYCTK
  hgvsc: ENST00000461183.1:c.125+674C>G
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000418951
  ensembl transcript: ENST00000473032
  gene symbol: GLYCTK
  hgvsc: ENST00000473032.1:c.-40+16C>G
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000419868
  ensembl transcript: ENST00000486393
  gene symbol: GLYCTK
  hgvsc: ENST00000486393.1:c.-40+16C>G
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000301965
  ensembl transcript: ENST00000305690
  gene symbol: GLYCTK
  hgvsc: ENST00000305690.8:c.-40+16C>G
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000417526
  ensembl transcript: ENST00000471180
  gene symbol: GLYCTK
  hgvsc: ENST00000471180.1:c.-5+16C>G
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000346825
  ensembl transcript: ENST00000354773
  gene symbol: GLYCTK
  hgvsc: ENST00000354773.4:c.-40+16C>G
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000389175
  ensembl transcript: ENST00000436784
  gene symbol: GLYCTK
  hgvsc: ENST00000436784.2:c.-40+16C>G
  variant of: http://identifiers.org/hgnc/24247
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2759
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 589
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2193
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 859
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 967
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 236
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2748
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 482
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
population: African
population: South Asian
population: Other
reference allele: C
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP

3-52321930-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52321930
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 52321930
    reference: chr 3
allele count: 1
allele frequency: 9.8833761612967e-5
allele num: 10118
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000417526
  ensembl transcript: ENST00000471180
  gene symbol: GLYCTK
  hgvsc: ENST00000471180.1:c.-5+38A>G
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000164091
  ensembl protein: ENSP00000417313
  ensembl transcript: ENST00000463624
  gene symbol: WDR82
  hgvsc: ENST00000463624.1:c.-327T>C
  variant of: http://identifiers.org/hgnc/28826
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000419868
  ensembl transcript: ENST00000486393
  gene symbol: GLYCTK
  hgvsc: ENST00000486393.1:c.-40+38A>G
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000417264
  ensembl transcript: ENST00000461183
  gene symbol: GLYCTK
  hgvsc: ENST00000461183.1:c.125+696A>G
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000389175
  ensembl transcript: ENST00000436784
  gene symbol: GLYCTK
  hgvsc: ENST00000436784.2:c.-40+38A>G
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000418951
  ensembl transcript: ENST00000473032
  gene symbol: GLYCTK
  hgvsc: ENST00000473032.1:c.-40+38A>G
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000346825
  ensembl transcript: ENST00000354773
  gene symbol: GLYCTK
  hgvsc: ENST00000354773.4:c.-40+38A>G
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000301965
  ensembl transcript: ENST00000305690
  gene symbol: GLYCTK
  hgvsc: ENST00000305690.8:c.-40+38A>G
  variant of: http://identifiers.org/hgnc/24247
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3023
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 798
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1474
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1188
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 957
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 592
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 283
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 766
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 656
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Finnish)
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
reference allele: A
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: DP

http://identifiers.org/exac.variant/3-52324270-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52324270
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 52324270
    reference: chr 3
allele count: 1
allele frequency: 1.214004758898655e-5
allele num: 82372
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000346825
  ensembl transcript: ENST00000354773
  gene symbol: GLYCTK
  hgvsc: ENST00000354773.4:c.-39-50C>A
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000417526
  ensembl transcript: ENST00000471180
  gene symbol: GLYCTK
  hgvsc: ENST00000471180.1:c.-4-706C>A
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000418951
  ensembl transcript: ENST00000473032
  gene symbol: GLYCTK
  hgvsc: ENST00000473032.1:c.-39-50C>A
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000419868
  ensembl transcript: ENST00000486393
  gene symbol: GLYCTK
  hgvsc: ENST00000486393.1:c.-39-50C>A
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168237
  ensembl transcript: ENST00000473583
  gene symbol: GLYCTK
  hgvsc: ENST00000473583.1:n.181C>A
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242797
  ensembl transcript: ENST00000493616
  gene symbol: GLYCTK-AS1
  hgvsc: ENST00000493616.1:n.304-1530G>T
  variant of: http://identifiers.org/hgnc/41043
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000301965
  ensembl transcript: ENST00000305690
  gene symbol: GLYCTK
  hgvsc: ENST00000305690.8:c.-39-50C>A
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000389175
  ensembl transcript: ENST00000436784
  gene symbol: GLYCTK
  hgvsc: ENST00000436784.2:c.-39-50C>A
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000417264
  ensembl transcript: ENST00000461183
  gene symbol: GLYCTK
  hgvsc: ENST00000461183.1:c.126-706C>A
  variant of: http://identifiers.org/hgnc/24247
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6364
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13515
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12776
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2218
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18658
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4914
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1540
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3891
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 482
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3150
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7093
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8516
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: South Asian
population: Other
population: African
population: East Asian
reference allele: C
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: ReadPosRankSum

3-52324290-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52324290
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 52324290
    reference: chr 3
allele count: 1
allele frequency: 1.159420289855072e-5
allele num: 86250
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000417264
  ensembl transcript: ENST00000461183
  gene symbol: GLYCTK
  hgvsc: ENST00000461183.1:c.126-686A>G
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000419868
  ensembl transcript: ENST00000486393
  gene symbol: GLYCTK
  hgvsc: ENST00000486393.1:c.-39-30A>G
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000301965
  ensembl transcript: ENST00000305690
  gene symbol: GLYCTK
  hgvsc: ENST00000305690.8:c.-39-30A>G
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000417526
  ensembl transcript: ENST00000471180
  gene symbol: GLYCTK
  hgvsc: ENST00000471180.1:c.-4-686A>G
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000418951
  ensembl transcript: ENST00000473032
  gene symbol: GLYCTK
  hgvsc: ENST00000473032.1:c.-39-30A>G
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168237
  ensembl transcript: ENST00000473583
  gene symbol: GLYCTK
  hgvsc: ENST00000473583.1:n.201A>G
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000389175
  ensembl transcript: ENST00000436784
  gene symbol: GLYCTK
  hgvsc: ENST00000436784.2:c.-39-30A>G
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242797
  ensembl transcript: ENST00000493616
  gene symbol: GLYCTK-AS1
  hgvsc: ENST00000493616.1:n.304-1550T>C
  variant of: http://identifiers.org/hgnc/41043
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000346825
  ensembl transcript: ENST00000354773
  gene symbol: GLYCTK
  hgvsc: ENST00000354773.4:c.-39-30A>G
  variant of: http://identifiers.org/hgnc/24247
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12450
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3586
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3954
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23519
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2748
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 918
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11948
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3612
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2592
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 477
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 304
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3362
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 548
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: African
population: South Asian
population: Other
population: Latino
reference allele: A
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: ClippingRankSum

3-52324295-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52324295
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 52324295
    reference: chr 3
allele count: 1
allele frequency: 1.130505562087365e-5
allele num: 88456
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000417264
  ensembl transcript: ENST00000461183
  gene symbol: GLYCTK
  hgvsc: ENST00000461183.1:c.126-681C>G
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000418951
  ensembl transcript: ENST00000473032
  gene symbol: GLYCTK
  hgvsc: ENST00000473032.1:c.-39-25C>G
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168237
  ensembl transcript: ENST00000473583
  gene symbol: GLYCTK
  hgvsc: ENST00000473583.1:n.206C>G
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000346825
  ensembl transcript: ENST00000354773
  gene symbol: GLYCTK
  hgvsc: ENST00000354773.4:c.-39-25C>G
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242797
  ensembl transcript: ENST00000493616
  gene symbol: GLYCTK-AS1
  hgvsc: ENST00000493616.1:n.304-1555G>C
  variant of: http://identifiers.org/hgnc/41043
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000417526
  ensembl transcript: ENST00000471180
  gene symbol: GLYCTK
  hgvsc: ENST00000471180.1:c.-4-681C>G
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000419868
  ensembl transcript: ENST00000486393
  gene symbol: GLYCTK
  hgvsc: ENST00000486393.1:c.-39-25C>G
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000389175
  ensembl transcript: ENST00000436784
  gene symbol: GLYCTK
  hgvsc: ENST00000436784.2:c.-39-25C>G
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000301965
  ensembl transcript: ENST00000305690
  gene symbol: GLYCTK
  hgvsc: ENST00000305690.8:c.-39-25C>G
  variant of: http://identifiers.org/hgnc/24247
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4845
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1105
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27009
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9241
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11645
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3322
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2000
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2370
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 454
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 736
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 698
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 387
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: African
population: South Asian
reference allele: C
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: DP

http://identifiers.org/exac.variant/3-52324296-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52324296
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 52324296
    reference: chr 3
allele count: 1
allele frequency: 1.122687264235675e-5
allele num: 89072
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168237
  ensembl transcript: ENST00000473583
  gene symbol: GLYCTK
  hgvsc: ENST00000473583.1:n.207C>A
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000418951
  ensembl transcript: ENST00000473032
  gene symbol: GLYCTK
  hgvsc: ENST00000473032.1:c.-39-24C>A
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000417526
  ensembl transcript: ENST00000471180
  gene symbol: GLYCTK
  hgvsc: ENST00000471180.1:c.-4-680C>A
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000346825
  ensembl transcript: ENST00000354773
  gene symbol: GLYCTK
  hgvsc: ENST00000354773.4:c.-39-24C>A
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000389175
  ensembl transcript: ENST00000436784
  gene symbol: GLYCTK
  hgvsc: ENST00000436784.2:c.-39-24C>A
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000419868
  ensembl transcript: ENST00000486393
  gene symbol: GLYCTK
  hgvsc: ENST00000486393.1:c.-39-24C>A
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242797
  ensembl transcript: ENST00000493616
  gene symbol: GLYCTK-AS1
  hgvsc: ENST00000493616.1:n.304-1556G>T
  variant of: http://identifiers.org/hgnc/41043
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000301965
  ensembl transcript: ENST00000305690
  gene symbol: GLYCTK
  hgvsc: ENST00000305690.8:c.-39-24C>A
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000417264
  ensembl transcript: ENST00000461183
  gene symbol: GLYCTK
  hgvsc: ENST00000461183.1:c.126-680C>A
  variant of: http://identifiers.org/hgnc/24247
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11447
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8649
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1144
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3230
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1826
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27860
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4993
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 181
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 365
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3881
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 394
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 401
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2184
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
population: East Asian
population: South Asian
reference allele: C
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum

3-52324310-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52324310
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 52324310
    reference: chr 3
allele count: 1
allele frequency: 1.028425685959933e-5
allele num: 97236
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168237
  ensembl transcript: ENST00000473583
  gene symbol: GLYCTK
  hgvsc: ENST00000473583.1:n.221T>A
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000346825
  ensembl transcript: ENST00000354773
  gene symbol: GLYCTK
  hgvsc: ENST00000354773.4:c.-39-10T>A
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000417264
  ensembl transcript: ENST00000461183
  gene symbol: GLYCTK
  hgvsc: ENST00000461183.1:c.126-666T>A
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000419868
  ensembl transcript: ENST00000486393
  gene symbol: GLYCTK
  hgvsc: ENST00000486393.1:c.-39-10T>A
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000417526
  ensembl transcript: ENST00000471180
  gene symbol: GLYCTK
  hgvsc: ENST00000471180.1:c.-4-666T>A
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000418951
  ensembl transcript: ENST00000473032
  gene symbol: GLYCTK
  hgvsc: ENST00000473032.1:c.-39-10T>A
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242797
  ensembl transcript: ENST00000493616
  gene symbol: GLYCTK-AS1
  hgvsc: ENST00000493616.1:n.304-1570A>T
  variant of: http://identifiers.org/hgnc/41043
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000389175
  ensembl transcript: ENST00000436784
  gene symbol: GLYCTK
  hgvsc: ENST00000436784.2:c.-39-10T>A
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000301965
  ensembl transcript: ENST00000305690
  gene symbol: GLYCTK
  hgvsc: ENST00000305690.8:c.-39-10T>A
  variant of: http://identifiers.org/hgnc/24247
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35416
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8089
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2702
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 835
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1578
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3632
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6922
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 720
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1069
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 258
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 331
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1490
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 274
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP

3-52324316-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52324316
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 52324316
    reference: chr 3
allele count: 1
allele frequency: 9.956589270779402e-6
allele num: 100436
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242797
  ensembl transcript: ENST00000493616
  gene symbol: GLYCTK-AS1
  hgvsc: ENST00000493616.1:n.304-1576G>C
  variant of: http://identifiers.org/hgnc/41043
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000389175
  ensembl transcript: ENST00000436784
  gene symbol: GLYCTK
  hgvsc: ENST00000436784.2:c.-39-4C>G
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000419868
  ensembl transcript: ENST00000486393
  gene symbol: GLYCTK
  hgvsc: ENST00000486393.1:c.-39-4C>G
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000301965
  ensembl transcript: ENST00000305690
  gene symbol: GLYCTK
  hgvsc: ENST00000305690.8:c.-39-4C>G
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000418951
  ensembl transcript: ENST00000473032
  gene symbol: GLYCTK
  hgvsc: ENST00000473032.1:c.-39-4C>G
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000417526
  ensembl transcript: ENST00000471180
  gene symbol: GLYCTK
  hgvsc: ENST00000471180.1:c.-4-660C>G
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168237
  ensembl transcript: ENST00000473583
  gene symbol: GLYCTK
  hgvsc: ENST00000473583.1:n.227C>G
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000417264
  ensembl transcript: ENST00000461183
  gene symbol: GLYCTK
  hgvsc: ENST00000461183.1:c.126-660C>G
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000346825
  ensembl transcript: ENST00000354773
  gene symbol: GLYCTK
  hgvsc: ENST00000354773.4:c.-39-4C>G
  variant of: http://identifiers.org/hgnc/24247
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2586
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7648
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6600
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 692
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37303
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2617
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1770
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6603
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2309
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 249
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 346
  bin: 5.25e1
  variant carriers: 0
hgvs: c.-39-4C>G
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD

3-52324318-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52324318
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 52324318
    reference: chr 3
allele count: 1
allele frequency: 9.852216748768473e-6
allele num: 101500
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000346825
  ensembl transcript: ENST00000354773
  gene symbol: GLYCTK
  hgvsc: ENST00000354773.4:c.-39-2A>T
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000417264
  ensembl transcript: ENST00000461183
  gene symbol: GLYCTK
  hgvsc: ENST00000461183.1:c.126-658A>T
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000301965
  ensembl transcript: ENST00000305690
  gene symbol: GLYCTK
  hgvsc: ENST00000305690.8:c.-39-2A>T
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000419868
  ensembl transcript: ENST00000486393
  gene symbol: GLYCTK
  hgvsc: ENST00000486393.1:c.-39-2A>T
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000417526
  ensembl transcript: ENST00000471180
  gene symbol: GLYCTK
  hgvsc: ENST00000471180.1:c.-4-658A>T
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242797
  ensembl transcript: ENST00000493616
  gene symbol: GLYCTK-AS1
  hgvsc: ENST00000493616.1:n.304-1578T>A
  variant of: http://identifiers.org/hgnc/41043
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168237
  ensembl transcript: ENST00000473583
  gene symbol: GLYCTK
  hgvsc: ENST00000473583.1:n.229A>T
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: true
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000389175
  ensembl transcript: ENST00000436784
  gene symbol: GLYCTK
  hgvsc: ENST00000436784.2:c.-39-2A>T
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000418951
  ensembl transcript: ENST00000473032
  gene symbol: GLYCTK
  hgvsc: ENST00000473032.1:c.-39-2A>T
  variant of: http://identifiers.org/hgnc/24247
canonical: true
consequence: splice acceptor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6184
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37937
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2357
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1792
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2562
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7833
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 261
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 147
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1015
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 162
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 467
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4191
  bin: 6.75e1
  variant carriers: 0
hgvs: c.-39-2A>T
num of homozygotes: 0
population: Other
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
reference allele: A
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff

3-52324319-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52324319
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 52324319
    reference: chr 3
allele count: 1
allele frequency: 9.820674483923556e-6
allele num: 101826
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000418951
  ensembl transcript: ENST00000473032
  gene symbol: GLYCTK
  hgvsc: ENST00000473032.1:c.-39-1G>A
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000301965
  ensembl transcript: ENST00000305690
  gene symbol: GLYCTK
  hgvsc: ENST00000305690.8:c.-39-1G>A
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000417264
  ensembl transcript: ENST00000461183
  gene symbol: GLYCTK
  hgvsc: ENST00000461183.1:c.126-657G>A
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000417526
  ensembl transcript: ENST00000471180
  gene symbol: GLYCTK
  hgvsc: ENST00000471180.1:c.-4-657G>A
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168237
  ensembl transcript: ENST00000473583
  gene symbol: GLYCTK
  hgvsc: ENST00000473583.1:n.230G>A
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000346825
  ensembl transcript: ENST00000354773
  gene symbol: GLYCTK
  hgvsc: ENST00000354773.4:c.-39-1G>A
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: true
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000389175
  ensembl transcript: ENST00000436784
  gene symbol: GLYCTK
  hgvsc: ENST00000436784.2:c.-39-1G>A
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242797
  ensembl transcript: ENST00000493616
  gene symbol: GLYCTK-AS1
  hgvsc: ENST00000493616.1:n.304-1579C>T
  variant of: http://identifiers.org/hgnc/41043
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000419868
  ensembl transcript: ENST00000486393
  gene symbol: GLYCTK
  hgvsc: ENST00000486393.1:c.-39-1G>A
  variant of: http://identifiers.org/hgnc/24247
canonical: true
consequence: splice acceptor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2296
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6041
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 612
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2556
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38050
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7911
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1809
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39727
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1173
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1020
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 409
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 450
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4223
  bin: 6.75e1
  variant carriers: 0
hgvs: c.-39-1G>A
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
population: Other
reference allele: G
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff

3-52324327-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52324327
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 52324327
    reference: chr 3
allele count: 1
allele frequency: 9.528346831824678e-6
allele num: 104950
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000419868
  ensembl transcript: ENST00000486393
  gene symbol: GLYCTK
  hgvsc: ENST00000486393.1:c.-32T>C
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168237
  ensembl transcript: ENST00000473583
  gene symbol: GLYCTK
  hgvsc: ENST00000473583.1:n.238T>C
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000417526
  ensembl transcript: ENST00000471180
  gene symbol: GLYCTK
  hgvsc: ENST00000471180.1:c.-4-649T>C
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242797
  ensembl transcript: ENST00000493616
  gene symbol: GLYCTK-AS1
  hgvsc: ENST00000493616.1:n.304-1587A>G
  variant of: http://identifiers.org/hgnc/41043
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000389175
  ensembl transcript: ENST00000436784
  gene symbol: GLYCTK
  hgvsc: ENST00000436784.2:c.-32T>C
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000346825
  ensembl transcript: ENST00000354773
  gene symbol: GLYCTK
  hgvsc: ENST00000354773.4:c.-32T>C
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000418951
  ensembl transcript: ENST00000473032
  gene symbol: GLYCTK
  hgvsc: ENST00000473032.1:c.-32T>C
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000301965
  ensembl transcript: ENST00000305690
  gene symbol: GLYCTK
  hgvsc: ENST00000305690.8:c.-32T>C
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000417264
  ensembl transcript: ENST00000461183
  gene symbol: GLYCTK
  hgvsc: ENST00000461183.1:c.126-649T>C
  variant of: http://identifiers.org/hgnc/24247
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1937
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8759
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 584
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39313
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2469
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4745
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1606
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 487
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 581
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 181
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1077
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1237
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 640
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: South Asian
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: T
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD

3-52324330-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52324330
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 52324330
    reference: chr 3
allele count: 1
allele frequency: 9.484606483676992e-6
allele num: 105434
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000346825
  ensembl transcript: ENST00000354773
  gene symbol: GLYCTK
  hgvsc: ENST00000354773.4:c.-29G>A
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000417526
  ensembl transcript: ENST00000471180
  gene symbol: GLYCTK
  hgvsc: ENST00000471180.1:c.-4-646G>A
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168237
  ensembl transcript: ENST00000473583
  gene symbol: GLYCTK
  hgvsc: ENST00000473583.1:n.241G>A
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242797
  ensembl transcript: ENST00000493616
  gene symbol: GLYCTK-AS1
  hgvsc: ENST00000493616.1:n.304-1590C>T
  variant of: http://identifiers.org/hgnc/41043
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000419868
  ensembl transcript: ENST00000486393
  gene symbol: GLYCTK
  hgvsc: ENST00000486393.1:c.-29G>A
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000418951
  ensembl transcript: ENST00000473032
  gene symbol: GLYCTK
  hgvsc: ENST00000473032.1:c.-29G>A
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000389175
  ensembl transcript: ENST00000436784
  gene symbol: GLYCTK
  hgvsc: ENST00000436784.2:c.-29G>A
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000417264
  ensembl transcript: ENST00000461183
  gene symbol: GLYCTK
  hgvsc: ENST00000461183.1:c.126-646G>A
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000419008
  ensembl transcript: ENST00000477382
  gene symbol: GLYCTK
  hgvsc: ENST00000477382.1:c.-29G>A
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000301965
  ensembl transcript: ENST00000305690
  gene symbol: GLYCTK
  hgvsc: ENST00000305690.8:c.-29G>A
  variant of: http://identifiers.org/hgnc/24247
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4539
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9072
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2440
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 758
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39008
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1599
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2002
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 183
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2174
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 289
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
population: Other
population: African
reference allele: G
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: DP

3-52324334-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52324334
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 52324334
    reference: chr 3
allele count: 1
allele frequency: 9.417437326954589e-6
allele num: 106186
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000346825
  ensembl transcript: ENST00000354773
  gene symbol: GLYCTK
  hgvsc: ENST00000354773.4:c.-25C>G
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000419868
  ensembl transcript: ENST00000486393
  gene symbol: GLYCTK
  hgvsc: ENST00000486393.1:c.-25C>G
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000418951
  ensembl transcript: ENST00000473032
  gene symbol: GLYCTK
  hgvsc: ENST00000473032.1:c.-25C>G
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000389175
  ensembl transcript: ENST00000436784
  gene symbol: GLYCTK
  hgvsc: ENST00000436784.2:c.-25C>G
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000417526
  ensembl transcript: ENST00000471180
  gene symbol: GLYCTK
  hgvsc: ENST00000471180.1:c.-4-642C>G
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000417264
  ensembl transcript: ENST00000461183
  gene symbol: GLYCTK
  hgvsc: ENST00000461183.1:c.126-642C>G
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000419008
  ensembl transcript: ENST00000477382
  gene symbol: GLYCTK
  hgvsc: ENST00000477382.1:c.-25C>G
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242797
  ensembl transcript: ENST00000493616
  gene symbol: GLYCTK-AS1
  hgvsc: ENST00000493616.1:n.304-1594G>C
  variant of: http://identifiers.org/hgnc/41043
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000301965
  ensembl transcript: ENST00000305690
  gene symbol: GLYCTK
  hgvsc: ENST00000305690.8:c.-25C>G
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168237
  ensembl transcript: ENST00000473583
  gene symbol: GLYCTK
  hgvsc: ENST00000473583.1:n.245C>G
  variant of: http://identifiers.org/hgnc/24247
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2431
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9382
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 710
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1524
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4211
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39146
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2076
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 492
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 161
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4616
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum

3-52324354-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52324354
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 52324354
    reference: chr 3
allele count: 2
allele frequency: 1.842910323983635e-5
allele num: 108524
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000419008
  ensembl transcript: ENST00000477382
  gene symbol: GLYCTK
  hgvsc: ENST00000477382.1:c.-5G>A
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000417264
  ensembl transcript: ENST00000461183
  gene symbol: GLYCTK
  hgvsc: ENST00000461183.1:c.126-622G>A
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000418951
  ensembl transcript: ENST00000473032
  gene symbol: GLYCTK
  hgvsc: ENST00000473032.1:c.-5G>A
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168237
  ensembl transcript: ENST00000473583
  gene symbol: GLYCTK
  hgvsc: ENST00000473583.1:n.265G>A
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000346825
  ensembl transcript: ENST00000354773
  gene symbol: GLYCTK
  hgvsc: ENST00000354773.4:c.-5G>A
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000389175
  ensembl transcript: ENST00000436784
  gene symbol: GLYCTK
  hgvsc: ENST00000436784.2:c.-5G>A
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000419868
  ensembl transcript: ENST00000486393
  gene symbol: GLYCTK
  hgvsc: ENST00000486393.1:c.-5G>A
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242797
  ensembl transcript: ENST00000493616
  gene symbol: GLYCTK-AS1
  hgvsc: ENST00000493616.1:n.304-1614C>T
  variant of: http://identifiers.org/hgnc/41043
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000417526
  ensembl transcript: ENST00000471180
  gene symbol: GLYCTK
  hgvsc: ENST00000471180.1:c.-4-622G>A
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000301965
  ensembl transcript: ENST00000305690
  gene symbol: GLYCTK
  hgvsc: ENST00000305690.8:c.-5G>A
  variant of: http://identifiers.org/hgnc/24247
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1147
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3302
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1637
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2426
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38511
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10418
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2254
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4884
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 307
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 131
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
reference allele: G
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum

3-52324363-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52324363
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 52324363
    reference: chr 3
allele count: 1
allele frequency: 9.19777046044039e-6
allele num: 108722
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000346825
  ensembl transcript: ENST00000354773
  gene symbol: GLYCTK
  hgvsc: ENST00000354773.4:c.5C>T
  hgvsp: ENSP00000346825.4:p.Ala2Val
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000417264
  ensembl transcript: ENST00000461183
  gene symbol: GLYCTK
  hgvsc: ENST00000461183.1:c.126-613C>T
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242797
  ensembl transcript: ENST00000493616
  gene symbol: GLYCTK-AS1
  hgvsc: ENST00000493616.1:n.304-1623G>A
  variant of: http://identifiers.org/hgnc/41043
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000389175
  ensembl transcript: ENST00000436784
  gene symbol: GLYCTK
  hgvsc: ENST00000436784.2:c.5C>T
  hgvsp: ENSP00000389175.2:p.Ala2Val
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000419868
  ensembl transcript: ENST00000486393
  gene symbol: GLYCTK
  hgvsc: ENST00000486393.1:c.5C>T
  hgvsp: ENSP00000419868.1:p.Ala2Val
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000418951
  ensembl transcript: ENST00000473032
  gene symbol: GLYCTK
  hgvsc: ENST00000473032.1:c.5C>T
  hgvsp: ENSP00000418951.1:p.Ala2Val
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000301965
  ensembl transcript: ENST00000305690
  gene symbol: GLYCTK
  hgvsc: ENST00000305690.8:c.5C>T
  hgvsp: ENSP00000301965.8:p.Ala2Val
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168237
  ensembl transcript: ENST00000473583
  gene symbol: GLYCTK
  hgvsc: ENST00000473583.1:n.274C>T
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000417526
  ensembl transcript: ENST00000471180
  gene symbol: GLYCTK
  hgvsc: ENST00000471180.1:c.-4-613C>T
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000419008
  ensembl transcript: ENST00000477382
  gene symbol: GLYCTK
  hgvsc: ENST00000477382.1:c.5C>T
  hgvsp: ENSP00000419008.1:p.Ala2Val
  variant of: http://identifiers.org/hgnc/24247
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2444
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10803
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2313
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37084
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3101
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2077
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1856
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 286
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 923
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Ala2Val
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
population: European (Finnish)
population: Latino
reference allele: C
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: DP

3-52324364-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52324364
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 52324364
    reference: chr 3
allele count: 1
allele frequency: 9.189993934604003e-6
allele num: 108814
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168237
  ensembl transcript: ENST00000473583
  gene symbol: GLYCTK
  hgvsc: ENST00000473583.1:n.275T>C
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000346825
  ensembl transcript: ENST00000354773
  gene symbol: GLYCTK
  hgvsc: ENST00000354773.4:c.6T>C
  hgvsp: ENST00000354773.4:c.6T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242797
  ensembl transcript: ENST00000493616
  gene symbol: GLYCTK-AS1
  hgvsc: ENST00000493616.1:n.304-1624A>G
  variant of: http://identifiers.org/hgnc/41043
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000419868
  ensembl transcript: ENST00000486393
  gene symbol: GLYCTK
  hgvsc: ENST00000486393.1:c.6T>C
  hgvsp: ENST00000486393.1:c.6T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000418951
  ensembl transcript: ENST00000473032
  gene symbol: GLYCTK
  hgvsc: ENST00000473032.1:c.6T>C
  hgvsp: ENST00000473032.1:c.6T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000417264
  ensembl transcript: ENST00000461183
  gene symbol: GLYCTK
  hgvsc: ENST00000461183.1:c.126-612T>C
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000417526
  ensembl transcript: ENST00000471180
  gene symbol: GLYCTK
  hgvsc: ENST00000471180.1:c.-4-612T>C
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000389175
  ensembl transcript: ENST00000436784
  gene symbol: GLYCTK
  hgvsc: ENST00000436784.2:c.6T>C
  hgvsp: ENST00000436784.2:c.6T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000419008
  ensembl transcript: ENST00000477382
  gene symbol: GLYCTK
  hgvsc: ENST00000477382.1:c.6T>C
  hgvsp: ENST00000477382.1:c.6T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000301965
  ensembl transcript: ENST00000305690
  gene symbol: GLYCTK
  hgvsc: ENST00000305690.8:c.6T>C
  hgvsp: ENST00000305690.8:c.6T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24247
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2447
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3094
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2065
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1842
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37155
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2286
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10820
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2280
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 779
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Ala2Ala
num of homozygotes: 0
population: Other
population: Latino
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: T
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum

3-52324379-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52324379
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 52324379
    reference: chr 3
allele count: 84
allele frequency: 7.657107436509818e-4
allele num: 109702
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000417526
  ensembl transcript: ENST00000471180
  gene symbol: GLYCTK
  hgvsc: ENST00000471180.1:c.-4-597C>T
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242797
  ensembl transcript: ENST00000493616
  gene symbol: GLYCTK-AS1
  hgvsc: ENST00000493616.1:n.304-1639G>A
  variant of: http://identifiers.org/hgnc/41043
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000346825
  ensembl transcript: ENST00000354773
  gene symbol: GLYCTK
  hgvsc: ENST00000354773.4:c.21C>T
  hgvsp: ENST00000354773.4:c.21C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000419868
  ensembl transcript: ENST00000486393
  gene symbol: GLYCTK
  hgvsc: ENST00000486393.1:c.21C>T
  hgvsp: ENST00000486393.1:c.21C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000389175
  ensembl transcript: ENST00000436784
  gene symbol: GLYCTK
  hgvsc: ENST00000436784.2:c.21C>T
  hgvsp: ENST00000436784.2:c.21C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000301965
  ensembl transcript: ENST00000305690
  gene symbol: GLYCTK
  hgvsc: ENST00000305690.8:c.21C>T
  hgvsp: ENST00000305690.8:c.21C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000419008
  ensembl transcript: ENST00000477382
  gene symbol: GLYCTK
  hgvsc: ENST00000477382.1:c.21C>T
  hgvsp: ENST00000477382.1:c.21C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000418951
  ensembl transcript: ENST00000473032
  gene symbol: GLYCTK
  hgvsc: ENST00000473032.1:c.21C>T
  hgvsp: ENST00000473032.1:c.21C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168237
  ensembl transcript: ENST00000473583
  gene symbol: GLYCTK
  hgvsc: ENST00000473583.1:n.290C>T
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000417264
  ensembl transcript: ENST00000461183
  gene symbol: GLYCTK
  hgvsc: ENST00000461183.1:c.126-597C>T
  variant of: http://identifiers.org/hgnc/24247
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 3.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36125
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2401
  bin: 3.25e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 2347
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2309
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1918
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 4.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 2949
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 4.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11723
  bin: 2.75e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 931
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 538
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Val7Val
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Other
population: European (Finnish)
population: Latino
population: East Asian
population: African
reference allele: C
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD

3-52324386-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52324386
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 52324386
    reference: chr 3
allele count: 7
allele frequency: 6.358780567566586e-5
allele num: 110084
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000346825
  ensembl transcript: ENST00000354773
  gene symbol: GLYCTK
  hgvsc: ENST00000354773.4:c.28C>G
  hgvsp: ENSP00000346825.4:p.Arg10Gly
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000301965
  ensembl transcript: ENST00000305690
  gene symbol: GLYCTK
  hgvsc: ENST00000305690.8:c.28C>G
  hgvsp: ENSP00000301965.8:p.Arg10Gly
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000419008
  ensembl transcript: ENST00000477382
  gene symbol: GLYCTK
  hgvsc: ENST00000477382.1:c.28C>G
  hgvsp: ENSP00000419008.1:p.Arg10Gly
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168237
  ensembl transcript: ENST00000473583
  gene symbol: GLYCTK
  hgvsc: ENST00000473583.1:n.297C>G
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000419868
  ensembl transcript: ENST00000486393
  gene symbol: GLYCTK
  hgvsc: ENST00000486393.1:c.28C>G
  hgvsp: ENSP00000419868.1:p.Arg10Gly
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000417526
  ensembl transcript: ENST00000471180
  gene symbol: GLYCTK
  hgvsc: ENST00000471180.1:c.-4-590C>G
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242797
  ensembl transcript: ENST00000493616
  gene symbol: GLYCTK-AS1
  hgvsc: ENST00000493616.1:n.304-1646G>C
  variant of: http://identifiers.org/hgnc/41043
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000389175
  ensembl transcript: ENST00000436784
  gene symbol: GLYCTK
  hgvsc: ENST00000436784.2:c.28C>G
  hgvsp: ENSP00000389175.2:p.Arg10Gly
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000418951
  ensembl transcript: ENST00000473032
  gene symbol: GLYCTK
  hgvsc: ENST00000473032.1:c.28C>G
  hgvsp: ENSP00000418951.1:p.Arg10Gly
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000417264
  ensembl transcript: ENST00000461183
  gene symbol: GLYCTK
  hgvsc: ENST00000461183.1:c.126-590C>G
  variant of: http://identifiers.org/hgnc/24247
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2537
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2881
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12740
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2351
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2210
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1921
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35168
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 240
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 993
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Arg10Gly
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Other
population: European (Finnish)
reference allele: C
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD

3-52324386-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52324386
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 52324386
    reference: chr 3
allele count: 1
allele frequency: 9.083972239380837e-6
allele num: 110084
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000301965
  ensembl transcript: ENST00000305690
  gene symbol: GLYCTK
  hgvsc: ENST00000305690.8:c.28C>T
  hgvsp: ENSP00000301965.8:p.Arg10Cys
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000346825
  ensembl transcript: ENST00000354773
  gene symbol: GLYCTK
  hgvsc: ENST00000354773.4:c.28C>T
  hgvsp: ENSP00000346825.4:p.Arg10Cys
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000419008
  ensembl transcript: ENST00000477382
  gene symbol: GLYCTK
  hgvsc: ENST00000477382.1:c.28C>T
  hgvsp: ENSP00000419008.1:p.Arg10Cys
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000389175
  ensembl transcript: ENST00000436784
  gene symbol: GLYCTK
  hgvsc: ENST00000436784.2:c.28C>T
  hgvsp: ENSP00000389175.2:p.Arg10Cys
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000417526
  ensembl transcript: ENST00000471180
  gene symbol: GLYCTK
  hgvsc: ENST00000471180.1:c.-4-590C>T
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000419868
  ensembl transcript: ENST00000486393
  gene symbol: GLYCTK
  hgvsc: ENST00000486393.1:c.28C>T
  hgvsp: ENSP00000419868.1:p.Arg10Cys
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000418951
  ensembl transcript: ENST00000473032
  gene symbol: GLYCTK
  hgvsc: ENST00000473032.1:c.28C>T
  hgvsp: ENSP00000418951.1:p.Arg10Cys
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168237
  ensembl transcript: ENST00000473583
  gene symbol: GLYCTK
  hgvsc: ENST00000473583.1:n.297C>T
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242797
  ensembl transcript: ENST00000493616
  gene symbol: GLYCTK-AS1
  hgvsc: ENST00000493616.1:n.304-1646G>A
  variant of: http://identifiers.org/hgnc/41043
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000417264
  ensembl transcript: ENST00000461183
  gene symbol: GLYCTK
  hgvsc: ENST00000461183.1:c.126-590C>T
  variant of: http://identifiers.org/hgnc/24247
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2881
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2351
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12740
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1921
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2537
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 35168
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2210
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 230
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1101
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Arg10Cys
num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: East Asian
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP

3-52324387-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52324387
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 52324387
    reference: chr 3
allele count: 1
allele frequency: 9.080837616461742e-6
allele num: 110122
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000417526
  ensembl transcript: ENST00000471180
  gene symbol: GLYCTK
  hgvsc: ENST00000471180.1:c.-4-589G>A
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000417264
  ensembl transcript: ENST00000461183
  gene symbol: GLYCTK
  hgvsc: ENST00000461183.1:c.126-589G>A
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242797
  ensembl transcript: ENST00000493616
  gene symbol: GLYCTK-AS1
  hgvsc: ENST00000493616.1:n.304-1647C>T
  variant of: http://identifiers.org/hgnc/41043
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000346825
  ensembl transcript: ENST00000354773
  gene symbol: GLYCTK
  hgvsc: ENST00000354773.4:c.29G>A
  hgvsp: ENSP00000346825.4:p.Arg10His
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000419008
  ensembl transcript: ENST00000477382
  gene symbol: GLYCTK
  hgvsc: ENST00000477382.1:c.29G>A
  hgvsp: ENSP00000419008.1:p.Arg10His
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000419868
  ensembl transcript: ENST00000486393
  gene symbol: GLYCTK
  hgvsc: ENST00000486393.1:c.29G>A
  hgvsp: ENSP00000419868.1:p.Arg10His
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000389175
  ensembl transcript: ENST00000436784
  gene symbol: GLYCTK
  hgvsc: ENST00000436784.2:c.29G>A
  hgvsp: ENSP00000389175.2:p.Arg10His
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000418951
  ensembl transcript: ENST00000473032
  gene symbol: GLYCTK
  hgvsc: ENST00000473032.1:c.29G>A
  hgvsp: ENSP00000418951.1:p.Arg10His
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168237
  ensembl transcript: ENST00000473583
  gene symbol: GLYCTK
  hgvsc: ENST00000473583.1:n.298G>A
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000301965
  ensembl transcript: ENST00000305690
  gene symbol: GLYCTK
  hgvsc: ENST00000305690.8:c.29G>A
  hgvsp: ENSP00000301965.8:p.Arg10His
  variant of: http://identifiers.org/hgnc/24247
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2270
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1892
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12894
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2188
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2628
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2893
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35075
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40333
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 245
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Arg10His
num of homozygotes: 0
population: South Asian
population: East Asian
population: Latino
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: African
reference allele: G
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD

3-52324393-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52324393
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 52324393
    reference: chr 3
allele count: 1
allele frequency: 9.044208089139715e-6
allele num: 110568
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000419868
  ensembl transcript: ENST00000486393
  gene symbol: GLYCTK
  hgvsc: ENST00000486393.1:c.35C>T
  hgvsp: ENSP00000419868.1:p.Ala12Val
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000418951
  ensembl transcript: ENST00000473032
  gene symbol: GLYCTK
  hgvsc: ENST00000473032.1:c.35C>T
  hgvsp: ENSP00000418951.1:p.Ala12Val
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000419008
  ensembl transcript: ENST00000477382
  gene symbol: GLYCTK
  hgvsc: ENST00000477382.1:c.35C>T
  hgvsp: ENSP00000419008.1:p.Ala12Val
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000417526
  ensembl transcript: ENST00000471180
  gene symbol: GLYCTK
  hgvsc: ENST00000471180.1:c.-4-583C>T
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000346825
  ensembl transcript: ENST00000354773
  gene symbol: GLYCTK
  hgvsc: ENST00000354773.4:c.35C>T
  hgvsp: ENSP00000346825.4:p.Ala12Val
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000389175
  ensembl transcript: ENST00000436784
  gene symbol: GLYCTK
  hgvsc: ENST00000436784.2:c.35C>T
  hgvsp: ENSP00000389175.2:p.Ala12Val
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168237
  ensembl transcript: ENST00000473583
  gene symbol: GLYCTK
  hgvsc: ENST00000473583.1:n.304C>T
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000417264
  ensembl transcript: ENST00000461183
  gene symbol: GLYCTK
  hgvsc: ENST00000461183.1:c.126-583C>T
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000301965
  ensembl transcript: ENST00000305690
  gene symbol: GLYCTK
  hgvsc: ENST00000305690.8:c.35C>T
  hgvsp: ENSP00000301965.8:p.Ala12Val
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242797
  ensembl transcript: ENST00000493616
  gene symbol: GLYCTK-AS1
  hgvsc: ENST00000493616.1:n.304-1653G>A
  variant of: http://identifiers.org/hgnc/41043
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13277
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2613
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2844
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35283
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2063
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1822
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1977
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1300
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 530
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Ala12Val
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Other
population: African
reference allele: C
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: DP

3-52324396-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52324396
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 52324396
    reference: chr 3
allele count: 3
allele frequency: 2.704066916642631e-5
allele num: 110944
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000418951
  ensembl transcript: ENST00000473032
  gene symbol: GLYCTK
  hgvsc: ENST00000473032.1:c.38G>A
  hgvsp: ENSP00000418951.1:p.Arg13Gln
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000389175
  ensembl transcript: ENST00000436784
  gene symbol: GLYCTK
  hgvsc: ENST00000436784.2:c.38G>A
  hgvsp: ENSP00000389175.2:p.Arg13Gln
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000417526
  ensembl transcript: ENST00000471180
  gene symbol: GLYCTK
  hgvsc: ENST00000471180.1:c.-4-580G>A
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000346825
  ensembl transcript: ENST00000354773
  gene symbol: GLYCTK
  hgvsc: ENST00000354773.4:c.38G>A
  hgvsp: ENSP00000346825.4:p.Arg13Gln
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168237
  ensembl transcript: ENST00000473583
  gene symbol: GLYCTK
  hgvsc: ENST00000473583.1:n.307G>A
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000419008
  ensembl transcript: ENST00000477382
  gene symbol: GLYCTK
  hgvsc: ENST00000477382.1:c.38G>A
  hgvsp: ENSP00000419008.1:p.Arg13Gln
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242797
  ensembl transcript: ENST00000493616
  gene symbol: GLYCTK-AS1
  hgvsc: ENST00000493616.1:n.304-1656C>T
  variant of: http://identifiers.org/hgnc/41043
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000417264
  ensembl transcript: ENST00000461183
  gene symbol: GLYCTK
  hgvsc: ENST00000461183.1:c.126-580G>A
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000301965
  ensembl transcript: ENST00000305690
  gene symbol: GLYCTK
  hgvsc: ENST00000305690.8:c.38G>A
  hgvsp: ENSP00000301965.8:p.Arg13Gln
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000419868
  ensembl transcript: ENST00000486393
  gene symbol: GLYCTK
  hgvsc: ENST00000486393.1:c.38G>A
  hgvsp: ENSP00000419868.1:p.Arg13Gln
  variant of: http://identifiers.org/hgnc/24247
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1755
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1678
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2008
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2684
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35340
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13692
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2773
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 397
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5094
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Arg13Gln
num of homozygotes: 0
population: Other
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
population: East Asian
population: European (Finnish)
reference allele: G
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: QD

3-52324415-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52324415
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 52324415
    reference: chr 3
allele count: 3
allele frequency: 2.660234810059234e-5
allele num: 112772
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000389175
  ensembl transcript: ENST00000436784
  gene symbol: GLYCTK
  hgvsc: ENST00000436784.2:c.57C>T
  hgvsp: ENST00000436784.2:c.57C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000346825
  ensembl transcript: ENST00000354773
  gene symbol: GLYCTK
  hgvsc: ENST00000354773.4:c.57C>T
  hgvsp: ENST00000354773.4:c.57C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000418951
  ensembl transcript: ENST00000473032
  gene symbol: GLYCTK
  hgvsc: ENST00000473032.1:c.57C>T
  hgvsp: ENST00000473032.1:c.57C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000417264
  ensembl transcript: ENST00000461183
  gene symbol: GLYCTK
  hgvsc: ENST00000461183.1:c.126-561C>T
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000417526
  ensembl transcript: ENST00000471180
  gene symbol: GLYCTK
  hgvsc: ENST00000471180.1:c.-4-561C>T
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242797
  ensembl transcript: ENST00000493616
  gene symbol: GLYCTK-AS1
  hgvsc: ENST00000493616.1:n.304-1675G>A
  variant of: http://identifiers.org/hgnc/41043
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000419008
  ensembl transcript: ENST00000477382
  gene symbol: GLYCTK
  hgvsc: ENST00000477382.1:c.57C>T
  hgvsp: ENST00000477382.1:c.57C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000419868
  ensembl transcript: ENST00000486393
  gene symbol: GLYCTK
  hgvsc: ENST00000486393.1:c.57C>T
  hgvsp: ENST00000486393.1:c.57C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000301965
  ensembl transcript: ENST00000305690
  gene symbol: GLYCTK
  hgvsc: ENST00000305690.8:c.57C>T
  hgvsp: ENST00000305690.8:c.57C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168237
  ensembl transcript: ENST00000473583
  gene symbol: GLYCTK
  hgvsc: ENST00000473583.1:n.326C>T
  variant of: http://identifiers.org/hgnc/24247
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14697
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36437
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1572
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1251
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 747
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2521
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2852
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 180
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Leu19Leu
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: African
population: Latino
population: Other
population: East Asian
reference allele: C
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: QD

3-52324417-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52324417
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 52324417
    reference: chr 3
allele count: 1
allele frequency: 8.863205289560917e-6
allele num: 112826
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168237
  ensembl transcript: ENST00000473583
  gene symbol: GLYCTK
  hgvsc: ENST00000473583.1:n.328T>C
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000389175
  ensembl transcript: ENST00000436784
  gene symbol: GLYCTK
  hgvsc: ENST00000436784.2:c.59T>C
  hgvsp: ENSP00000389175.2:p.Leu20Pro
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242797
  ensembl transcript: ENST00000493616
  gene symbol: GLYCTK-AS1
  hgvsc: ENST00000493616.1:n.304-1677A>G
  variant of: http://identifiers.org/hgnc/41043
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000301965
  ensembl transcript: ENST00000305690
  gene symbol: GLYCTK
  hgvsc: ENST00000305690.8:c.59T>C
  hgvsp: ENSP00000301965.8:p.Leu20Pro
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000418951
  ensembl transcript: ENST00000473032
  gene symbol: GLYCTK
  hgvsc: ENST00000473032.1:c.59T>C
  hgvsp: ENSP00000418951.1:p.Leu20Pro
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000346825
  ensembl transcript: ENST00000354773
  gene symbol: GLYCTK
  hgvsc: ENST00000354773.4:c.59T>C
  hgvsp: ENSP00000346825.4:p.Leu20Pro
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000419868
  ensembl transcript: ENST00000486393
  gene symbol: GLYCTK
  hgvsc: ENST00000486393.1:c.59T>C
  hgvsp: ENSP00000419868.1:p.Leu20Pro
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000417264
  ensembl transcript: ENST00000461183
  gene symbol: GLYCTK
  hgvsc: ENST00000461183.1:c.126-559T>C
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000419008
  ensembl transcript: ENST00000477382
  gene symbol: GLYCTK
  hgvsc: ENST00000477382.1:c.59T>C
  hgvsp: ENSP00000419008.1:p.Leu20Pro
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000417526
  ensembl transcript: ENST00000471180
  gene symbol: GLYCTK
  hgvsc: ENST00000471180.1:c.-4-559T>C
  variant of: http://identifiers.org/hgnc/24247
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1224
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14744
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 758
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36436
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1560
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2503
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2862
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 147
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 406
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Leu20Pro
num of homozygotes: 0
population: East Asian
population: Other
population: African
population: South Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: T
site quality: MQ
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD

http://identifiers.org/exac.variant/3-52324422-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52324422
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 52324422
    reference: chr 3
allele count: 1
allele frequency: 8.847208705653366e-6
allele num: 113030
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000418951
  ensembl transcript: ENST00000473032
  gene symbol: GLYCTK
  hgvsc: ENST00000473032.1:c.64C>A
  hgvsp: ENST00000473032.1:c.64C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168237
  ensembl transcript: ENST00000473583
  gene symbol: GLYCTK
  hgvsc: ENST00000473583.1:n.333C>A
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000389175
  ensembl transcript: ENST00000436784
  gene symbol: GLYCTK
  hgvsc: ENST00000436784.2:c.64C>A
  hgvsp: ENST00000436784.2:c.64C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000419868
  ensembl transcript: ENST00000486393
  gene symbol: GLYCTK
  hgvsc: ENST00000486393.1:c.64C>A
  hgvsp: ENST00000486393.1:c.64C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242797
  ensembl transcript: ENST00000493616
  gene symbol: GLYCTK-AS1
  hgvsc: ENST00000493616.1:n.304-1682G>T
  variant of: http://identifiers.org/hgnc/41043
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000346825
  ensembl transcript: ENST00000354773
  gene symbol: GLYCTK
  hgvsc: ENST00000354773.4:c.64C>A
  hgvsp: ENST00000354773.4:c.64C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000301965
  ensembl transcript: ENST00000305690
  gene symbol: GLYCTK
  hgvsc: ENST00000305690.8:c.64C>A
  hgvsp: ENST00000305690.8:c.64C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000419008
  ensembl transcript: ENST00000477382
  gene symbol: GLYCTK
  hgvsc: ENST00000477382.1:c.64C>A
  hgvsp: ENST00000477382.1:c.64C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000417264
  ensembl transcript: ENST00000461183
  gene symbol: GLYCTK
  hgvsc: ENST00000461183.1:c.126-554C>A
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000417526
  ensembl transcript: ENST00000471180
  gene symbol: GLYCTK
  hgvsc: ENST00000471180.1:c.-4-554C>A
  variant of: http://identifiers.org/hgnc/24247
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36304
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1212
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1496
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 762
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2930
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14918
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2449
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 210
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 200
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Arg22Arg
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: African
population: Other
population: South Asian
reference allele: C
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum

3-52324422-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52324422
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 52324422
    reference: chr 3
allele count: 4
allele frequency: 3.538883482261346e-5
allele num: 113030
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000418951
  ensembl transcript: ENST00000473032
  gene symbol: GLYCTK
  hgvsc: ENST00000473032.1:c.64C>T
  hgvsp: ENSP00000418951.1:p.Arg22Trp
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168237
  ensembl transcript: ENST00000473583
  gene symbol: GLYCTK
  hgvsc: ENST00000473583.1:n.333C>T
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242797
  ensembl transcript: ENST00000493616
  gene symbol: GLYCTK-AS1
  hgvsc: ENST00000493616.1:n.304-1682G>A
  variant of: http://identifiers.org/hgnc/41043
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000346825
  ensembl transcript: ENST00000354773
  gene symbol: GLYCTK
  hgvsc: ENST00000354773.4:c.64C>T
  hgvsp: ENSP00000346825.4:p.Arg22Trp
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000419008
  ensembl transcript: ENST00000477382
  gene symbol: GLYCTK
  hgvsc: ENST00000477382.1:c.64C>T
  hgvsp: ENSP00000419008.1:p.Arg22Trp
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000301965
  ensembl transcript: ENST00000305690
  gene symbol: GLYCTK
  hgvsc: ENST00000305690.8:c.64C>T
  hgvsp: ENSP00000301965.8:p.Arg22Trp
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000417264
  ensembl transcript: ENST00000461183
  gene symbol: GLYCTK
  hgvsc: ENST00000461183.1:c.126-554C>T
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000419868
  ensembl transcript: ENST00000486393
  gene symbol: GLYCTK
  hgvsc: ENST00000486393.1:c.64C>T
  hgvsp: ENSP00000419868.1:p.Arg22Trp
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000417526
  ensembl transcript: ENST00000471180
  gene symbol: GLYCTK
  hgvsc: ENST00000471180.1:c.-4-554C>T
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000389175
  ensembl transcript: ENST00000436784
  gene symbol: GLYCTK
  hgvsc: ENST00000436784.2:c.64C>T
  hgvsp: ENSP00000389175.2:p.Arg22Trp
  variant of: http://identifiers.org/hgnc/24247
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1212
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14918
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2930
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 762
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1496
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36304
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2449
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 191
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1245
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Arg22Trp
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: C
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: DP

3-52324423-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52324423
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 52324423
    reference: chr 3
allele count: 4
allele frequency: 3.535130357931949e-5
allele num: 113150
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000419868
  ensembl transcript: ENST00000486393
  gene symbol: GLYCTK
  hgvsc: ENST00000486393.1:c.65G>A
  hgvsp: ENSP00000419868.1:p.Arg22Gln
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000417526
  ensembl transcript: ENST00000471180
  gene symbol: GLYCTK
  hgvsc: ENST00000471180.1:c.-4-553G>A
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000419008
  ensembl transcript: ENST00000477382
  gene symbol: GLYCTK
  hgvsc: ENST00000477382.1:c.65G>A
  hgvsp: ENSP00000419008.1:p.Arg22Gln
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000346825
  ensembl transcript: ENST00000354773
  gene symbol: GLYCTK
  hgvsc: ENST00000354773.4:c.65G>A
  hgvsp: ENSP00000346825.4:p.Arg22Gln
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000389175
  ensembl transcript: ENST00000436784
  gene symbol: GLYCTK
  hgvsc: ENST00000436784.2:c.65G>A
  hgvsp: ENSP00000389175.2:p.Arg22Gln
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000417264
  ensembl transcript: ENST00000461183
  gene symbol: GLYCTK
  hgvsc: ENST00000461183.1:c.126-553G>A
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000418951
  ensembl transcript: ENST00000473032
  gene symbol: GLYCTK
  hgvsc: ENST00000473032.1:c.65G>A
  hgvsp: ENSP00000418951.1:p.Arg22Gln
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168237
  ensembl transcript: ENST00000473583
  gene symbol: GLYCTK
  hgvsc: ENST00000473583.1:n.334G>A
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000301965
  ensembl transcript: ENST00000305690
  gene symbol: GLYCTK
  hgvsc: ENST00000305690.8:c.65G>A
  hgvsp: ENSP00000301965.8:p.Arg22Gln
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242797
  ensembl transcript: ENST00000493616
  gene symbol: GLYCTK-AS1
  hgvsc: ENST00000493616.1:n.304-1683C>T
  variant of: http://identifiers.org/hgnc/41043
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1441
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1209
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 793
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14971
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2465
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2935
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36282
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 191
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 209
  bin: 9.75e1
  variant carriers: 4
hgvs: p.Arg22Gln
num of homozygotes: 0
population: South Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
reference allele: G
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: MQRankSum

3-52324424-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52324424
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 52324424
    reference: chr 3
allele count: 1
allele frequency: 8.827216072595024e-6
allele num: 113286
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168237
  ensembl transcript: ENST00000473583
  gene symbol: GLYCTK
  hgvsc: ENST00000473583.1:n.335G>T
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000346825
  ensembl transcript: ENST00000354773
  gene symbol: GLYCTK
  hgvsc: ENST00000354773.4:c.66G>T
  hgvsp: ENST00000354773.4:c.66G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000419008
  ensembl transcript: ENST00000477382
  gene symbol: GLYCTK
  hgvsc: ENST00000477382.1:c.66G>T
  hgvsp: ENST00000477382.1:c.66G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000418951
  ensembl transcript: ENST00000473032
  gene symbol: GLYCTK
  hgvsc: ENST00000473032.1:c.66G>T
  hgvsp: ENST00000473032.1:c.66G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000389175
  ensembl transcript: ENST00000436784
  gene symbol: GLYCTK
  hgvsc: ENST00000436784.2:c.66G>T
  hgvsp: ENST00000436784.2:c.66G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000419868
  ensembl transcript: ENST00000486393
  gene symbol: GLYCTK
  hgvsc: ENST00000486393.1:c.66G>T
  hgvsp: ENST00000486393.1:c.66G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000417264
  ensembl transcript: ENST00000461183
  gene symbol: GLYCTK
  hgvsc: ENST00000461183.1:c.126-552G>T
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000301965
  ensembl transcript: ENST00000305690
  gene symbol: GLYCTK
  hgvsc: ENST00000305690.8:c.66G>T
  hgvsp: ENST00000305690.8:c.66G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242797
  ensembl transcript: ENST00000493616
  gene symbol: GLYCTK-AS1
  hgvsc: ENST00000493616.1:n.304-1684C>A
  variant of: http://identifiers.org/hgnc/41043
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000417526
  ensembl transcript: ENST00000471180
  gene symbol: GLYCTK
  hgvsc: ENST00000471180.1:c.-4-552G>T
  variant of: http://identifiers.org/hgnc/24247
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2473
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36324
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 777
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1193
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2911
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1409
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15045
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 130
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 562
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Arg22Arg
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: Latino
population: African
population: South Asian
population: East Asian
reference allele: G
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum

3-52324429-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52324429
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 52324429
    reference: chr 3
allele count: 42
allele frequency: 3.701484118870519e-4
allele num: 113468
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242797
  ensembl transcript: ENST00000493616
  gene symbol: GLYCTK-AS1
  hgvsc: ENST00000493616.1:n.304-1689G>A
  variant of: http://identifiers.org/hgnc/41043
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000418951
  ensembl transcript: ENST00000473032
  gene symbol: GLYCTK
  hgvsc: ENST00000473032.1:c.71C>T
  hgvsp: ENSP00000418951.1:p.Ser24Leu
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000419008
  ensembl transcript: ENST00000477382
  gene symbol: GLYCTK
  hgvsc: ENST00000477382.1:c.71C>T
  hgvsp: ENSP00000419008.1:p.Ser24Leu
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000419868
  ensembl transcript: ENST00000486393
  gene symbol: GLYCTK
  hgvsc: ENST00000486393.1:c.71C>T
  hgvsp: ENSP00000419868.1:p.Ser24Leu
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000301965
  ensembl transcript: ENST00000305690
  gene symbol: GLYCTK
  hgvsc: ENST00000305690.8:c.71C>T
  hgvsp: ENSP00000301965.8:p.Ser24Leu
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000346825
  ensembl transcript: ENST00000354773
  gene symbol: GLYCTK
  hgvsc: ENST00000354773.4:c.71C>T
  hgvsp: ENSP00000346825.4:p.Ser24Leu
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000389175
  ensembl transcript: ENST00000436784
  gene symbol: GLYCTK
  hgvsc: ENST00000436784.2:c.71C>T
  hgvsp: ENSP00000389175.2:p.Ser24Leu
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000417264
  ensembl transcript: ENST00000461183
  gene symbol: GLYCTK
  hgvsc: ENST00000461183.1:c.126-547C>T
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168237
  ensembl transcript: ENST00000473583
  gene symbol: GLYCTK
  hgvsc: ENST00000473583.1:n.340C>T
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000417526
  ensembl transcript: ENST00000471180
  gene symbol: GLYCTK
  hgvsc: ENST00000471180.1:c.-4-547C>T
  variant of: http://identifiers.org/hgnc/24247
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1206
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 5.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1324
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2450
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 4.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 853
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15187
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36108
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2956
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 557
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 268
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Ser24Leu
num of homozygotes: 1
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
population: African
reference allele: C
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: QD

3-52324434-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52324434
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 52324434
    reference: chr 3
allele count: 1
allele frequency: 8.798015167778149e-6
allele num: 113662
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000419008
  ensembl transcript: ENST00000477382
  gene symbol: GLYCTK
  hgvsc: ENST00000477382.1:c.76G>A
  hgvsp: ENSP00000419008.1:p.Ala26Thr
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000346825
  ensembl transcript: ENST00000354773
  gene symbol: GLYCTK
  hgvsc: ENST00000354773.4:c.76G>A
  hgvsp: ENSP00000346825.4:p.Ala26Thr
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168237
  ensembl transcript: ENST00000473583
  gene symbol: GLYCTK
  hgvsc: ENST00000473583.1:n.345G>A
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000389175
  ensembl transcript: ENST00000436784
  gene symbol: GLYCTK
  hgvsc: ENST00000436784.2:c.76G>A
  hgvsp: ENSP00000389175.2:p.Ala26Thr
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000417526
  ensembl transcript: ENST00000471180
  gene symbol: GLYCTK
  hgvsc: ENST00000471180.1:c.-4-542G>A
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000418951
  ensembl transcript: ENST00000473032
  gene symbol: GLYCTK
  hgvsc: ENST00000473032.1:c.76G>A
  hgvsp: ENSP00000418951.1:p.Ala26Thr
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000417264
  ensembl transcript: ENST00000461183
  gene symbol: GLYCTK
  hgvsc: ENST00000461183.1:c.126-542G>A
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242797
  ensembl transcript: ENST00000493616
  gene symbol: GLYCTK-AS1
  hgvsc: ENST00000493616.1:n.304-1694C>T
  variant of: http://identifiers.org/hgnc/41043
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000419868
  ensembl transcript: ENST00000486393
  gene symbol: GLYCTK
  hgvsc: ENST00000486393.1:c.76G>A
  hgvsp: ENSP00000419868.1:p.Ala26Thr
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000301965
  ensembl transcript: ENST00000305690
  gene symbol: GLYCTK
  hgvsc: ENST00000305690.8:c.76G>A
  hgvsp: ENSP00000301965.8:p.Ala26Thr
  variant of: http://identifiers.org/hgnc/24247
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15331
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3046
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1274
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2393
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1236
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35929
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 856
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 209
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1235
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ala26Thr
num of homozygotes: 0
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
population: East Asian
reference allele: G
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: FS
site quality: QD

3-52324437-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52324437
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 52324437
    reference: chr 3
allele count: 109
allele frequency: 9.57686089829198e-4
allele num: 113816
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242797
  ensembl transcript: ENST00000493616
  gene symbol: GLYCTK-AS1
  hgvsc: ENST00000493616.1:n.304-1697G>A
  variant of: http://identifiers.org/hgnc/41043
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000419008
  ensembl transcript: ENST00000477382
  gene symbol: GLYCTK
  hgvsc: ENST00000477382.1:c.79C>T
  hgvsp: ENSP00000419008.1:p.Arg27Cys
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000417264
  ensembl transcript: ENST00000461183
  gene symbol: GLYCTK
  hgvsc: ENST00000461183.1:c.126-539C>T
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168237
  ensembl transcript: ENST00000473583
  gene symbol: GLYCTK
  hgvsc: ENST00000473583.1:n.348C>T
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000301965
  ensembl transcript: ENST00000305690
  gene symbol: GLYCTK
  hgvsc: ENST00000305690.8:c.79C>T
  hgvsp: ENSP00000301965.8:p.Arg27Cys
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000346825
  ensembl transcript: ENST00000354773
  gene symbol: GLYCTK
  hgvsc: ENST00000354773.4:c.79C>T
  hgvsp: ENSP00000346825.4:p.Arg27Cys
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000389175
  ensembl transcript: ENST00000436784
  gene symbol: GLYCTK
  hgvsc: ENST00000436784.2:c.79C>T
  hgvsp: ENSP00000389175.2:p.Arg27Cys
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000417526
  ensembl transcript: ENST00000471180
  gene symbol: GLYCTK
  hgvsc: ENST00000471180.1:c.-4-539C>T
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000419868
  ensembl transcript: ENST00000486393
  gene symbol: GLYCTK
  hgvsc: ENST00000486393.1:c.79C>T
  hgvsp: ENSP00000419868.1:p.Arg27Cys
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000418951
  ensembl transcript: ENST00000473032
  gene symbol: GLYCTK
  hgvsc: ENST00000473032.1:c.79C>T
  hgvsp: ENSP00000418951.1:p.Arg27Cys
  variant of: http://identifiers.org/hgnc/24247
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 4.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 3.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 35923
  bin: 2.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 1198
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3033
  bin: 3.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 791
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2374
  bin: 7.5e0
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 5.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 4.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 15462
  bin: 2.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 5.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1252
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 191
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1266
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Arg27Cys
num of homozygotes: 0
population: East Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Other
population: Latino
reference allele: C
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD

3-52324438-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52324438
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 52324438
    reference: chr 3
allele count: 29
allele frequency: 2.54542262792943e-4
allele num: 113930
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000418951
  ensembl transcript: ENST00000473032
  gene symbol: GLYCTK
  hgvsc: ENST00000473032.1:c.80G>A
  hgvsp: ENSP00000418951.1:p.Arg27His
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000417526
  ensembl transcript: ENST00000471180
  gene symbol: GLYCTK
  hgvsc: ENST00000471180.1:c.-4-538G>A
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000419008
  ensembl transcript: ENST00000477382
  gene symbol: GLYCTK
  hgvsc: ENST00000477382.1:c.80G>A
  hgvsp: ENSP00000419008.1:p.Arg27His
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000417264
  ensembl transcript: ENST00000461183
  gene symbol: GLYCTK
  hgvsc: ENST00000461183.1:c.126-538G>A
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168237
  ensembl transcript: ENST00000473583
  gene symbol: GLYCTK
  hgvsc: ENST00000473583.1:n.349G>A
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000389175
  ensembl transcript: ENST00000436784
  gene symbol: GLYCTK
  hgvsc: ENST00000436784.2:c.80G>A
  hgvsp: ENSP00000389175.2:p.Arg27His
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000301965
  ensembl transcript: ENST00000305690
  gene symbol: GLYCTK
  hgvsc: ENST00000305690.8:c.80G>A
  hgvsp: ENSP00000301965.8:p.Arg27His
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000419868
  ensembl transcript: ENST00000486393
  gene symbol: GLYCTK
  hgvsc: ENST00000486393.1:c.80G>A
  hgvsp: ENSP00000419868.1:p.Arg27His
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000346825
  ensembl transcript: ENST00000354773
  gene symbol: GLYCTK
  hgvsc: ENST00000354773.4:c.80G>A
  hgvsp: ENSP00000346825.4:p.Arg27His
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242797
  ensembl transcript: ENST00000493616
  gene symbol: GLYCTK-AS1
  hgvsc: ENST00000493616.1:n.304-1698C>T
  variant of: http://identifiers.org/hgnc/41043
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2386
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 35969
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1240
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15536
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 763
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 4.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3053
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1169
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5700
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 191
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Arg27His
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: African
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum

3-52324444-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52324444
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 52324444
    reference: chr 3
allele count: 1
allele frequency: 8.754114433783878e-6
allele num: 114232
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000419868
  ensembl transcript: ENST00000486393
  gene symbol: GLYCTK
  hgvsc: ENST00000486393.1:c.86C>T
  hgvsp: ENSP00000419868.1:p.Ala29Val
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000419008
  ensembl transcript: ENST00000477382
  gene symbol: GLYCTK
  hgvsc: ENST00000477382.1:c.86C>T
  hgvsp: ENSP00000419008.1:p.Ala29Val
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000346825
  ensembl transcript: ENST00000354773
  gene symbol: GLYCTK
  hgvsc: ENST00000354773.4:c.86C>T
  hgvsp: ENSP00000346825.4:p.Ala29Val
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000417526
  ensembl transcript: ENST00000471180
  gene symbol: GLYCTK
  hgvsc: ENST00000471180.1:c.-4-532C>T
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000301965
  ensembl transcript: ENST00000305690
  gene symbol: GLYCTK
  hgvsc: ENST00000305690.8:c.86C>T
  hgvsp: ENSP00000301965.8:p.Ala29Val
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000418951
  ensembl transcript: ENST00000473032
  gene symbol: GLYCTK
  hgvsc: ENST00000473032.1:c.86C>T
  hgvsp: ENSP00000418951.1:p.Ala29Val
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000417264
  ensembl transcript: ENST00000461183
  gene symbol: GLYCTK
  hgvsc: ENST00000461183.1:c.126-532C>T
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242797
  ensembl transcript: ENST00000493616
  gene symbol: GLYCTK-AS1
  hgvsc: ENST00000493616.1:n.304-1704G>A
  variant of: http://identifiers.org/hgnc/41043
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000389175
  ensembl transcript: ENST00000436784
  gene symbol: GLYCTK
  hgvsc: ENST00000436784.2:c.86C>T
  hgvsp: ENSP00000389175.2:p.Ala29Val
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168237
  ensembl transcript: ENST00000473583
  gene symbol: GLYCTK
  hgvsc: ENST00000473583.1:n.355C>T
  variant of: http://identifiers.org/hgnc/24247
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3039
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2369
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15627
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 36124
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1215
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1071
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 712
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2640
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 141
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Ala29Val
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: South Asian
population: East Asian
population: European (Finnish)
population: Other
reference allele: C
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum

3-52324455-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52324455
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 52324455
    reference: chr 3
allele count: 1
allele frequency: 8.700342793506064e-6
allele num: 114938
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000419008
  ensembl transcript: ENST00000477382
  gene symbol: GLYCTK
  hgvsc: ENST00000477382.1:c.97G>C
  hgvsp: ENSP00000419008.1:p.Ala33Pro
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000301965
  ensembl transcript: ENST00000305690
  gene symbol: GLYCTK
  hgvsc: ENST00000305690.8:c.97G>C
  hgvsp: ENSP00000301965.8:p.Ala33Pro
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000346825
  ensembl transcript: ENST00000354773
  gene symbol: GLYCTK
  hgvsc: ENST00000354773.4:c.97G>C
  hgvsp: ENSP00000346825.4:p.Ala33Pro
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000389175
  ensembl transcript: ENST00000436784
  gene symbol: GLYCTK
  hgvsc: ENST00000436784.2:c.97G>C
  hgvsp: ENSP00000389175.2:p.Ala33Pro
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000417526
  ensembl transcript: ENST00000471180
  gene symbol: GLYCTK
  hgvsc: ENST00000471180.1:c.-4-521G>C
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000419868
  ensembl transcript: ENST00000486393
  gene symbol: GLYCTK
  hgvsc: ENST00000486393.1:c.97G>C
  hgvsp: ENSP00000419868.1:p.Ala33Pro
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000418951
  ensembl transcript: ENST00000473032
  gene symbol: GLYCTK
  hgvsc: ENST00000473032.1:c.97G>C
  hgvsp: ENSP00000418951.1:p.Ala33Pro
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000417264
  ensembl transcript: ENST00000461183
  gene symbol: GLYCTK
  hgvsc: ENST00000461183.1:c.126-521G>C
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168237
  ensembl transcript: ENST00000473583
  gene symbol: GLYCTK
  hgvsc: ENST00000473583.1:n.366G>C
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242797
  ensembl transcript: ENST00000493616
  gene symbol: GLYCTK-AS1
  hgvsc: ENST00000493616.1:n.304-1715C>G
  variant of: http://identifiers.org/hgnc/41043
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15887
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1181
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2389
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3074
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 770
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 625
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36272
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5863
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 152
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Ala33Pro
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
population: African
reference allele: G
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD

3-52324473-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52324473
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 52324473
    reference: chr 3
allele count: 3
allele frequency: 2.587500646875162e-5
allele num: 115942
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000419868
  ensembl transcript: ENST00000486393
  gene symbol: GLYCTK
  hgvsc: ENST00000486393.1:c.115A>G
  hgvsp: ENSP00000419868.1:p.Arg39Gly
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000389175
  ensembl transcript: ENST00000436784
  gene symbol: GLYCTK
  hgvsc: ENST00000436784.2:c.115A>G
  hgvsp: ENSP00000389175.2:p.Arg39Gly
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000346825
  ensembl transcript: ENST00000354773
  gene symbol: GLYCTK
  hgvsc: ENST00000354773.4:c.115A>G
  hgvsp: ENSP00000346825.4:p.Arg39Gly
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000417526
  ensembl transcript: ENST00000471180
  gene symbol: GLYCTK
  hgvsc: ENST00000471180.1:c.-4-503A>G
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000301965
  ensembl transcript: ENST00000305690
  gene symbol: GLYCTK
  hgvsc: ENST00000305690.8:c.115A>G
  hgvsp: ENSP00000301965.8:p.Arg39Gly
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000419008
  ensembl transcript: ENST00000477382
  gene symbol: GLYCTK
  hgvsc: ENST00000477382.1:c.115A>G
  hgvsp: ENSP00000419008.1:p.Arg39Gly
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000418951
  ensembl transcript: ENST00000473032
  gene symbol: GLYCTK
  hgvsc: ENST00000473032.1:c.115A>G
  hgvsp: ENSP00000418951.1:p.Arg39Gly
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000417264
  ensembl transcript: ENST00000461183
  gene symbol: GLYCTK
  hgvsc: ENST00000461183.1:c.126-503A>G
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242797
  ensembl transcript: ENST00000493616
  gene symbol: GLYCTK-AS1
  hgvsc: ENST00000493616.1:n.304-1733T>C
  variant of: http://identifiers.org/hgnc/41043
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168237
  ensembl transcript: ENST00000473583
  gene symbol: GLYCTK
  hgvsc: ENST00000473583.1:n.384A>G
  variant of: http://identifiers.org/hgnc/24247
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1171
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2237
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3087
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36306
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 838
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16130
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 211
  bin: 9.75e1
  variant carriers: 3
hgvs: p.Arg39Gly
num of homozygotes: 0
population: Other
population: South Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
reference allele: A
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQ

3-52324474-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52324474
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 52324474
    reference: chr 3
allele count: 1
allele frequency: 8.62128422649838e-6
allele num: 115992
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000417526
  ensembl transcript: ENST00000471180
  gene symbol: GLYCTK
  hgvsc: ENST00000471180.1:c.-4-502G>C
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242797
  ensembl transcript: ENST00000493616
  gene symbol: GLYCTK-AS1
  hgvsc: ENST00000493616.1:n.304-1734C>G
  variant of: http://identifiers.org/hgnc/41043
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168237
  ensembl transcript: ENST00000473583
  gene symbol: GLYCTK
  hgvsc: ENST00000473583.1:n.385G>C
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000419868
  ensembl transcript: ENST00000486393
  gene symbol: GLYCTK
  hgvsc: ENST00000486393.1:c.116G>C
  hgvsp: ENSP00000419868.1:p.Arg39Thr
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000418951
  ensembl transcript: ENST00000473032
  gene symbol: GLYCTK
  hgvsc: ENST00000473032.1:c.116G>C
  hgvsp: ENSP00000418951.1:p.Arg39Thr
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000419008
  ensembl transcript: ENST00000477382
  gene symbol: GLYCTK
  hgvsc: ENST00000477382.1:c.116G>C
  hgvsp: ENSP00000419008.1:p.Arg39Thr
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000346825
  ensembl transcript: ENST00000354773
  gene symbol: GLYCTK
  hgvsc: ENST00000354773.4:c.116G>C
  hgvsp: ENSP00000346825.4:p.Arg39Thr
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000301965
  ensembl transcript: ENST00000305690
  gene symbol: GLYCTK
  hgvsc: ENST00000305690.8:c.116G>C
  hgvsp: ENSP00000301965.8:p.Arg39Thr
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000389175
  ensembl transcript: ENST00000436784
  gene symbol: GLYCTK
  hgvsc: ENST00000436784.2:c.116G>C
  hgvsp: ENSP00000389175.2:p.Arg39Thr
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000417264
  ensembl transcript: ENST00000461183
  gene symbol: GLYCTK
  hgvsc: ENST00000461183.1:c.126-502G>C
  variant of: http://identifiers.org/hgnc/24247
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36334
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2225
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1168
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3088
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 845
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16127
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 152
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Arg39Thr
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
population: African
population: European (Finnish)
population: Latino
reference allele: G
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum

3-52324490-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52324490
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 52324490
    reference: chr 3
allele count: 4
allele frequency: 3.425068073227955e-5
allele num: 116786
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000419868
  ensembl transcript: ENST00000486393
  gene symbol: GLYCTK
  hgvsc: ENST00000486393.1:c.132T>A
  hgvsp: ENSP00000419868.1:p.Ser44Arg
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000301965
  ensembl transcript: ENST00000305690
  gene symbol: GLYCTK
  hgvsc: ENST00000305690.8:c.132T>A
  hgvsp: ENSP00000301965.8:p.Ser44Arg
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000389175
  ensembl transcript: ENST00000436784
  gene symbol: GLYCTK
  hgvsc: ENST00000436784.2:c.132T>A
  hgvsp: ENSP00000389175.2:p.Ser44Arg
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242797
  ensembl transcript: ENST00000493616
  gene symbol: GLYCTK-AS1
  hgvsc: ENST00000493616.1:n.304-1750A>T
  variant of: http://identifiers.org/hgnc/41043
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000417264
  ensembl transcript: ENST00000461183
  gene symbol: GLYCTK
  hgvsc: ENST00000461183.1:c.126-486T>A
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000419008
  ensembl transcript: ENST00000477382
  gene symbol: GLYCTK
  hgvsc: ENST00000477382.1:c.132T>A
  hgvsp: ENSP00000419008.1:p.Ser44Arg
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000346825
  ensembl transcript: ENST00000354773
  gene symbol: GLYCTK
  hgvsc: ENST00000354773.4:c.132T>A
  hgvsp: ENSP00000346825.4:p.Ser44Arg
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168237
  ensembl transcript: ENST00000473583
  gene symbol: GLYCTK
  hgvsc: ENST00000473583.1:n.401T>A
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000417526
  ensembl transcript: ENST00000471180
  gene symbol: GLYCTK
  hgvsc: ENST00000471180.1:c.-4-486T>A
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000418951
  ensembl transcript: ENST00000473032
  gene symbol: GLYCTK
  hgvsc: ENST00000473032.1:c.132T>A
  hgvsp: ENSP00000418951.1:p.Ser44Arg
  variant of: http://identifiers.org/hgnc/24247
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16366
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1968
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3119
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 788
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1076
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36610
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 194
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45786
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Ser44Arg
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: Other
population: African
population: South Asian
population: European (Non-Finnish)
population: East Asian
reference allele: T
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum

3-52324494-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52324494
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 52324494
    reference: chr 3
allele count: 2
allele frequency: 1.709051134809954e-5
allele num: 117024
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000346825
  ensembl transcript: ENST00000354773
  gene symbol: GLYCTK
  hgvsc: ENST00000354773.4:c.136G>A
  hgvsp: ENSP00000346825.4:p.Val46Ile
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000417264
  ensembl transcript: ENST00000461183
  gene symbol: GLYCTK
  hgvsc: ENST00000461183.1:c.126-482G>A
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000417526
  ensembl transcript: ENST00000471180
  gene symbol: GLYCTK
  hgvsc: ENST00000471180.1:c.-4-482G>A
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000301965
  ensembl transcript: ENST00000305690
  gene symbol: GLYCTK
  hgvsc: ENST00000305690.8:c.136G>A
  hgvsp: ENSP00000301965.8:p.Val46Ile
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000389175
  ensembl transcript: ENST00000436784
  gene symbol: GLYCTK
  hgvsc: ENST00000436784.2:c.136G>A
  hgvsp: ENSP00000389175.2:p.Val46Ile
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000419008
  ensembl transcript: ENST00000477382
  gene symbol: GLYCTK
  hgvsc: ENST00000477382.1:c.136G>A
  hgvsp: ENSP00000419008.1:p.Val46Ile
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000419868
  ensembl transcript: ENST00000486393
  gene symbol: GLYCTK
  hgvsc: ENST00000486393.1:c.136G>A
  hgvsp: ENSP00000419868.1:p.Val46Ile
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000418951
  ensembl transcript: ENST00000473032
  gene symbol: GLYCTK
  hgvsc: ENST00000473032.1:c.136G>A
  hgvsp: ENSP00000418951.1:p.Val46Ile
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242797
  ensembl transcript: ENST00000493616
  gene symbol: GLYCTK-AS1
  hgvsc: ENST00000493616.1:n.304-1754C>T
  variant of: http://identifiers.org/hgnc/41043
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168237
  ensembl transcript: ENST00000473583
  gene symbol: GLYCTK
  hgvsc: ENST00000473583.1:n.405G>A
  variant of: http://identifiers.org/hgnc/24247
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1890
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1023
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16473
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3139
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36701
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 729
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 153
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1577
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Val46Ile
num of homozygotes: 0
population: African
population: Latino
population: Other
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff

3-52324500-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52324500
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 52324500
    reference: chr 3
allele count: 1
allele frequency: 8.522243054371911e-6
allele num: 117340
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000346825
  ensembl transcript: ENST00000354773
  gene symbol: GLYCTK
  hgvsc: ENST00000354773.4:c.142G>A
  hgvsp: ENSP00000346825.4:p.Ala48Thr
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000417264
  ensembl transcript: ENST00000461183
  gene symbol: GLYCTK
  hgvsc: ENST00000461183.1:c.126-476G>A
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000301965
  ensembl transcript: ENST00000305690
  gene symbol: GLYCTK
  hgvsc: ENST00000305690.8:c.142G>A
  hgvsp: ENSP00000301965.8:p.Ala48Thr
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000417526
  ensembl transcript: ENST00000471180
  gene symbol: GLYCTK
  hgvsc: ENST00000471180.1:c.-4-476G>A
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000419868
  ensembl transcript: ENST00000486393
  gene symbol: GLYCTK
  hgvsc: ENST00000486393.1:c.142G>A
  hgvsp: ENSP00000419868.1:p.Ala48Thr
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000419008
  ensembl transcript: ENST00000477382
  gene symbol: GLYCTK
  hgvsc: ENST00000477382.1:c.142G>A
  hgvsp: ENSP00000419008.1:p.Ala48Thr
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242797
  ensembl transcript: ENST00000493616
  gene symbol: GLYCTK-AS1
  hgvsc: ENST00000493616.1:n.304-1760C>T
  variant of: http://identifiers.org/hgnc/41043
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000418951
  ensembl transcript: ENST00000473032
  gene symbol: GLYCTK
  hgvsc: ENST00000473032.1:c.142G>A
  hgvsp: ENSP00000418951.1:p.Ala48Thr
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168237
  ensembl transcript: ENST00000473583
  gene symbol: GLYCTK
  hgvsc: ENST00000473583.1:n.411G>A
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000389175
  ensembl transcript: ENST00000436784
  gene symbol: GLYCTK
  hgvsc: ENST00000436784.2:c.142G>A
  hgvsp: ENSP00000389175.2:p.Ala48Thr
  variant of: http://identifiers.org/hgnc/24247
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 998
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36714
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3160
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 724
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1773
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16618
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 234
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 290
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Ala48Thr
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: Other
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: African
reference allele: G
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: QD
site quality: BaseQRankSum

3-52324505-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52324505
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 52324505
    reference: chr 3
allele count: 8
allele frequency: 6.802952481376918e-5
allele num: 117596
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000389175
  ensembl transcript: ENST00000436784
  gene symbol: GLYCTK
  hgvsc: ENST00000436784.2:c.147G>A
  hgvsp: ENST00000436784.2:c.147G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000301965
  ensembl transcript: ENST00000305690
  gene symbol: GLYCTK
  hgvsc: ENST00000305690.8:c.147G>A
  hgvsp: ENST00000305690.8:c.147G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000418951
  ensembl transcript: ENST00000473032
  gene symbol: GLYCTK
  hgvsc: ENST00000473032.1:c.147G>A
  hgvsp: ENST00000473032.1:c.147G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000346825
  ensembl transcript: ENST00000354773
  gene symbol: GLYCTK
  hgvsc: ENST00000354773.4:c.147G>A
  hgvsp: ENST00000354773.4:c.147G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000417264
  ensembl transcript: ENST00000461183
  gene symbol: GLYCTK
  hgvsc: ENST00000461183.1:c.126-471G>A
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000419008
  ensembl transcript: ENST00000477382
  gene symbol: GLYCTK
  hgvsc: ENST00000477382.1:c.147G>A
  hgvsp: ENST00000477382.1:c.147G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168237
  ensembl transcript: ENST00000473583
  gene symbol: GLYCTK
  hgvsc: ENST00000473583.1:n.416G>A
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242797
  ensembl transcript: ENST00000493616
  gene symbol: GLYCTK-AS1
  hgvsc: ENST00000493616.1:n.304-1765C>T
  variant of: http://identifiers.org/hgnc/41043
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000419868
  ensembl transcript: ENST00000486393
  gene symbol: GLYCTK
  hgvsc: ENST00000486393.1:c.147G>A
  hgvsp: ENST00000486393.1:c.147G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000417526
  ensembl transcript: ENST00000471180
  gene symbol: GLYCTK
  hgvsc: ENST00000471180.1:c.-4-471G>A
  variant of: http://identifiers.org/hgnc/24247
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16690
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36694
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1674
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3178
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 790
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 985
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 289
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 203
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Val49Val
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Other
population: Latino
population: African
population: East Asian
reference allele: G
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff

3-52324511-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52324511
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 52324511
    reference: chr 3
allele count: 10
allele frequency: 8.486803021301876e-5
allele num: 117830
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000417526
  ensembl transcript: ENST00000471180
  gene symbol: GLYCTK
  hgvsc: ENST00000471180.1:c.-4-465G>A
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168237
  ensembl transcript: ENST00000473583
  gene symbol: GLYCTK
  hgvsc: ENST00000473583.1:n.422G>A
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000418951
  ensembl transcript: ENST00000473032
  gene symbol: GLYCTK
  hgvsc: ENST00000473032.1:c.153G>A
  hgvsp: ENST00000473032.1:c.153G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000346825
  ensembl transcript: ENST00000354773
  gene symbol: GLYCTK
  hgvsc: ENST00000354773.4:c.153G>A
  hgvsp: ENST00000354773.4:c.153G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000389175
  ensembl transcript: ENST00000436784
  gene symbol: GLYCTK
  hgvsc: ENST00000436784.2:c.153G>A
  hgvsp: ENST00000436784.2:c.153G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000417264
  ensembl transcript: ENST00000461183
  gene symbol: GLYCTK
  hgvsc: ENST00000461183.1:c.126-465G>A
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000419008
  ensembl transcript: ENST00000477382
  gene symbol: GLYCTK
  hgvsc: ENST00000477382.1:c.153G>A
  hgvsp: ENST00000477382.1:c.153G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000419868
  ensembl transcript: ENST00000486393
  gene symbol: GLYCTK
  hgvsc: ENST00000486393.1:c.153G>A
  hgvsp: ENST00000486393.1:c.153G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000301965
  ensembl transcript: ENST00000305690
  gene symbol: GLYCTK
  hgvsc: ENST00000305690.8:c.153G>A
  hgvsp: ENST00000305690.8:c.153G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242797
  ensembl transcript: ENST00000493616
  gene symbol: GLYCTK-AS1
  hgvsc: ENST00000493616.1:n.304-1771C>T
  variant of: http://identifiers.org/hgnc/41043
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 16816
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1563
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36667
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3228
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 792
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 940
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1330
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 582
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Pro51Pro
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
population: African
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum

3-52324518-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52324518
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 52324518
    reference: chr 3
allele count: 1
allele frequency: 8.466396870819716e-6
allele num: 118114
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000419008
  ensembl transcript: ENST00000477382
  gene symbol: GLYCTK
  hgvsc: ENST00000477382.1:c.160A>T
  hgvsp: ENSP00000419008.1:p.Met54Leu
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000389175
  ensembl transcript: ENST00000436784
  gene symbol: GLYCTK
  hgvsc: ENST00000436784.2:c.160A>T
  hgvsp: ENSP00000389175.2:p.Met54Leu
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000418951
  ensembl transcript: ENST00000473032
  gene symbol: GLYCTK
  hgvsc: ENST00000473032.1:c.160A>T
  hgvsp: ENSP00000418951.1:p.Met54Leu
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000419868
  ensembl transcript: ENST00000486393
  gene symbol: GLYCTK
  hgvsc: ENST00000486393.1:c.160A>T
  hgvsp: ENSP00000419868.1:p.Met54Leu
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000301965
  ensembl transcript: ENST00000305690
  gene symbol: GLYCTK
  hgvsc: ENST00000305690.8:c.160A>T
  hgvsp: ENSP00000301965.8:p.Met54Leu
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000417264
  ensembl transcript: ENST00000461183
  gene symbol: GLYCTK
  hgvsc: ENST00000461183.1:c.126-458A>T
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000346825
  ensembl transcript: ENST00000354773
  gene symbol: GLYCTK
  hgvsc: ENST00000354773.4:c.160A>T
  hgvsp: ENSP00000346825.4:p.Met54Leu
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242797
  ensembl transcript: ENST00000493616
  gene symbol: GLYCTK-AS1
  hgvsc: ENST00000493616.1:n.304-1778T>A
  variant of: http://identifiers.org/hgnc/41043
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168237
  ensembl transcript: ENST00000473583
  gene symbol: GLYCTK
  hgvsc: ENST00000473583.1:n.429A>T
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000417526
  ensembl transcript: ENST00000471180
  gene symbol: GLYCTK
  hgvsc: ENST00000471180.1:c.-4-458A>T
  variant of: http://identifiers.org/hgnc/24247
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1475
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 850
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36659
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 913
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16923
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3235
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1826
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 155
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Met54Leu
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum

3-52324519-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52324519
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 52324519
    reference: chr 3
allele count: 1
allele frequency: 8.464820207218798e-6
allele num: 118136
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000417526
  ensembl transcript: ENST00000471180
  gene symbol: GLYCTK
  hgvsc: ENST00000471180.1:c.-4-457T>G
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000346825
  ensembl transcript: ENST00000354773
  gene symbol: GLYCTK
  hgvsc: ENST00000354773.4:c.161T>G
  hgvsp: ENSP00000346825.4:p.Met54Arg
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000419008
  ensembl transcript: ENST00000477382
  gene symbol: GLYCTK
  hgvsc: ENST00000477382.1:c.161T>G
  hgvsp: ENSP00000419008.1:p.Met54Arg
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000301965
  ensembl transcript: ENST00000305690
  gene symbol: GLYCTK
  hgvsc: ENST00000305690.8:c.161T>G
  hgvsp: ENSP00000301965.8:p.Met54Arg
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000389175
  ensembl transcript: ENST00000436784
  gene symbol: GLYCTK
  hgvsc: ENST00000436784.2:c.161T>G
  hgvsp: ENSP00000389175.2:p.Met54Arg
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168237
  ensembl transcript: ENST00000473583
  gene symbol: GLYCTK
  hgvsc: ENST00000473583.1:n.430T>G
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000418951
  ensembl transcript: ENST00000473032
  gene symbol: GLYCTK
  hgvsc: ENST00000473032.1:c.161T>G
  hgvsp: ENSP00000418951.1:p.Met54Arg
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242797
  ensembl transcript: ENST00000493616
  gene symbol: GLYCTK-AS1
  hgvsc: ENST00000493616.1:n.304-1779A>C
  variant of: http://identifiers.org/hgnc/41043
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000417264
  ensembl transcript: ENST00000461183
  gene symbol: GLYCTK
  hgvsc: ENST00000461183.1:c.126-457T>G
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000419868
  ensembl transcript: ENST00000486393
  gene symbol: GLYCTK
  hgvsc: ENST00000486393.1:c.161T>G
  hgvsp: ENSP00000419868.1:p.Met54Arg
  variant of: http://identifiers.org/hgnc/24247
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3234
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 910
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36653
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1467
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 853
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16940
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 202
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Met54Arg
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Other
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
reference allele: T
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum

3-52324522-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52324522
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 52324522
    reference: chr 3
allele count: 1
allele frequency: 8.457088731774973e-6
allele num: 118244
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000301965
  ensembl transcript: ENST00000305690
  gene symbol: GLYCTK
  hgvsc: ENST00000305690.8:c.164T>A
  hgvsp: ENSP00000301965.8:p.Leu55Gln
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000419008
  ensembl transcript: ENST00000477382
  gene symbol: GLYCTK
  hgvsc: ENST00000477382.1:c.164T>A
  hgvsp: ENSP00000419008.1:p.Leu55Gln
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168237
  ensembl transcript: ENST00000473583
  gene symbol: GLYCTK
  hgvsc: ENST00000473583.1:n.433T>A
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000346825
  ensembl transcript: ENST00000354773
  gene symbol: GLYCTK
  hgvsc: ENST00000354773.4:c.164T>A
  hgvsp: ENSP00000346825.4:p.Leu55Gln
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000418951
  ensembl transcript: ENST00000473032
  gene symbol: GLYCTK
  hgvsc: ENST00000473032.1:c.164T>A
  hgvsp: ENSP00000418951.1:p.Leu55Gln
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000389175
  ensembl transcript: ENST00000436784
  gene symbol: GLYCTK
  hgvsc: ENST00000436784.2:c.164T>A
  hgvsp: ENSP00000389175.2:p.Leu55Gln
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000419868
  ensembl transcript: ENST00000486393
  gene symbol: GLYCTK
  hgvsc: ENST00000486393.1:c.164T>A
  hgvsp: ENSP00000419868.1:p.Leu55Gln
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000417264
  ensembl transcript: ENST00000461183
  gene symbol: GLYCTK
  hgvsc: ENST00000461183.1:c.126-454T>A
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242797
  ensembl transcript: ENST00000493616
  gene symbol: GLYCTK-AS1
  hgvsc: ENST00000493616.1:n.304-1782A>T
  variant of: http://identifiers.org/hgnc/41043
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000417526
  ensembl transcript: ENST00000471180
  gene symbol: GLYCTK
  hgvsc: ENST00000471180.1:c.-4-454T>A
  variant of: http://identifiers.org/hgnc/24247
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3225
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 856
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 902
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1407
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16985
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36681
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Leu55Gln
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: T
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: QD

3-52324526-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52324526
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 52324526
    reference: chr 3
allele count: 2
allele frequency: 1.68947457340767e-5
allele num: 118380
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242797
  ensembl transcript: ENST00000493616
  gene symbol: GLYCTK-AS1
  hgvsc: ENST00000493616.1:n.304-1786G>C
  variant of: http://identifiers.org/hgnc/41043
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000419868
  ensembl transcript: ENST00000486393
  gene symbol: GLYCTK
  hgvsc: ENST00000486393.1:c.168C>G
  hgvsp: ENSP00000419868.1:p.His56Gln
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000389175
  ensembl transcript: ENST00000436784
  gene symbol: GLYCTK
  hgvsc: ENST00000436784.2:c.168C>G
  hgvsp: ENSP00000389175.2:p.His56Gln
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000418951
  ensembl transcript: ENST00000473032
  gene symbol: GLYCTK
  hgvsc: ENST00000473032.1:c.168C>G
  hgvsp: ENSP00000418951.1:p.His56Gln
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000419008
  ensembl transcript: ENST00000477382
  gene symbol: GLYCTK
  hgvsc: ENST00000477382.1:c.168C>G
  hgvsp: ENSP00000419008.1:p.His56Gln
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000417264
  ensembl transcript: ENST00000461183
  gene symbol: GLYCTK
  hgvsc: ENST00000461183.1:c.126-450C>G
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000346825
  ensembl transcript: ENST00000354773
  gene symbol: GLYCTK
  hgvsc: ENST00000354773.4:c.168C>G
  hgvsp: ENSP00000346825.4:p.His56Gln
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168237
  ensembl transcript: ENST00000473583
  gene symbol: GLYCTK
  hgvsc: ENST00000473583.1:n.437C>G
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000301965
  ensembl transcript: ENST00000305690
  gene symbol: GLYCTK
  hgvsc: ENST00000305690.8:c.168C>G
  hgvsp: ENSP00000301965.8:p.His56Gln
  variant of: http://identifiers.org/hgnc/24247
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168237
  ensembl protein: ENSP00000417526
  ensembl transcript: ENST00000471180
  gene symbol: GLYCTK
  hgvsc: ENST00000471180.1:c.-4-450C>G
  variant of: http://identifiers.org/hgnc/24247
canonical: true
consequence: missense
filter: PASS
hgvs: p.His56Gln
num of homozygotes: 0
reference allele: C

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12988
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7272
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 580
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5594
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 41666
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3928
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.512e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.76e-2

MQRankSum
type: SiteQuality
SIO_000300: 5.0e-2

DP
type: SiteQuality
SIO_000300: 7.35977e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.49e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.35e0

VQSLOD
type: SiteQuality
SIO_000300: 4.2e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.32e-1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12978
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.403268445085316e-5
allele num: 41610
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5574
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5540
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 580
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3940
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 7.33669e5

QD
type: SiteQuality
SIO_000300: 1.485e1

MQRankSum
type: SiteQuality
SIO_000300: -3.12e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.76e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.57e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.18e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 2.19e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.88e-1

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 38300
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 3568
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 12594
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 550
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African
type: Population
allele count: 4
allele frequency: 7.840062720501764e-4
allele num: 5102
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MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.25e-2

FS
type: SiteQuality
SIO_000300: 2.114e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.43e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.758e0

DP
type: SiteQuality
SIO_000300: 6.87474e5

VQSLOD
type: SiteQuality
SIO_000300: 2.41e0

MQRankSum
type: SiteQuality
SIO_000300: 1.82e-1

QD
type: SiteQuality
SIO_000300: 1.374e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.66e-1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12468
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 3.137747097583935e-4
allele num: 6374
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 37080
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3464
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4880
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 522
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 6.70571e5

QD
type: SiteQuality
SIO_000300: 2.81e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.43e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.85e0

MQRankSum
type: SiteQuality
SIO_000300: -1.239e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.13e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.89e-1

MQ
type: SiteQuality
SIO_000300: 5.432e1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.25e-1

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.074652564260239e-5
allele num: 32524
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 478
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11978
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3044
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4222
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4354
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.5e1

MQRankSum
type: SiteQuality
SIO_000300: 8.110000000000001e-1

FS
type: SiteQuality
SIO_000300: 4.13e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.12e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.07e0

VQSLOD
type: SiteQuality
SIO_000300: 9.3e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.63e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.04e-2

DP
type: SiteQuality
SIO_000300: 6.26472e5

East Asian
type: Population
allele count: 3
allele frequency: 7.232401157184186e-4
allele num: 4148
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.225182222795588e-5
allele num: 31006
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2904
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 462
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4016
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11832
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.435e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.89e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.1e0

QD
type: SiteQuality
SIO_000300: 1.02e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.7e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.25e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 1.25e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 6.09826e5

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5042
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2828
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 452
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4054
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3912
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.309943068979214e-5
allele num: 30212
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.145e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.12e0

MQRankSum
type: SiteQuality
SIO_000300: 5.9e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.591e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.24e0

DP
type: SiteQuality
SIO_000300: 6.02568e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.37e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 6.89e0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 390
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2176
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10820
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 22722
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 2.767017155506364e-4
allele num: 3614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3088
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MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -1.228e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.96e-1

DP
type: SiteQuality
SIO_000300: 5.37249e5

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.77e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.49e-2

MQ
type: SiteQuality
SIO_000300: 5.829e1

QD
type: SiteQuality
SIO_000300: 1.625e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.78e-1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3068
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 386
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3600
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3118
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2178
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.847745750184775e-4
allele num: 10824
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.109e1

MQRankSum
type: SiteQuality
SIO_000300: 4.06e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.48e-2

DP
type: SiteQuality
SIO_000300: 5.35084e5

BaseQRankSum
type: SiteQuality
SIO_000300: 5.5e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -5.5e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.919999999999999e-1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2306
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2212
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1638
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2120
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 292
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.010305112143867e-4
allele num: 9898
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VQSLOD
type: SiteQuality
SIO_000300: -1.294e0

MQRankSum
type: SiteQuality
SIO_000300: -3.58e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.27e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.31e-1

FS
type: SiteQuality
SIO_000300: 1.738e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.72e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 5.73e-1

DP
type: SiteQuality
SIO_000300: 4.67637e5

QD
type: SiteQuality
SIO_000300: 1.267e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 136
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African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 618
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3380
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6892
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 730
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 200
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.5e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.23e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -5.5e-1

QD
type: SiteQuality
SIO_000300: 1.936e1

DP
type: SiteQuality
SIO_000300: 2.95342e5

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -1.715e0

MQRankSum
type: SiteQuality
SIO_000300: -5.5e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.5e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 514
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European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.646973012399708e-4
allele num: 2742
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 190
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 96
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InbreedingCoeff
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.914e1

VQSLOD
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 2.45e-1

FS
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: -1.75e-1

BaseQRankSum
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.281e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.05e-1

DP
type: SiteQuality
SIO_000300: 1.19925e5

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2794
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 162
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4
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African
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allele count: 1
allele frequency: 1.937984496124031e-3
allele num: 516
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South Asian
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allele count: 0
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East Asian
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allele frequency: 0.0e0
allele num: 190
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ClippingRankSum
type: SiteQuality
SIO_000300: -1.669e0

MQ
type: SiteQuality
SIO_000300: 5.943e1

FS
type: SiteQuality
SIO_000300: 3.985e0

DP
type: SiteQuality
SIO_000300: 1.21727e5

MQRankSum
type: SiteQuality
SIO_000300: -1.93e-1

BaseQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -3.73e-2

QD
type: SiteQuality
SIO_000300: 1.188e1

VQSLOD
type: SiteQuality
SIO_000300: -1.303e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.3e-2

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 120
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6
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African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 544
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 182
num of homozygotes: 0

East Asian
type: Population
allele count: 0
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South Asian
type: Population
allele count: 34
allele frequency: 4.972214097689383e-3
allele num: 6838
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BaseQRankSum
type: SiteQuality
SIO_000300: -3.204e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.46e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -1.98e-1

QD
type: SiteQuality
SIO_000300: 1.308e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.8e-2

VQSLOD
type: SiteQuality
SIO_000300: 2.56e0

DP
type: SiteQuality
SIO_000300: 1.43238e5

ClippingRankSum
type: SiteQuality
SIO_000300: 1.02e-1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 200
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South Asian
type: Population
allele count: 0
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African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 562
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European (Non-Finnish)
type: Population
allele count: 11
allele frequency: 3.082959641255605e-3
allele num: 3568
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 188
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 132
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ClippingRankSum
type: SiteQuality
SIO_000300: -2.69e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.3e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.39e-1

QD
type: SiteQuality
SIO_000300: 1.194e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 2.86e-1

MQ
type: SiteQuality
SIO_000300: 5.983e1

DP
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -3.26e-2

MQRankSum
type: SiteQuality
SIO_000300: -4.91e-1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 200
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7614
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European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.787068004459309e-4
allele num: 3588
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 132
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BaseQRankSum
type: SiteQuality
SIO_000300: 1.48e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.06e-1

MQRankSum
type: SiteQuality
SIO_000300: 9.88e-1

QD
type: SiteQuality
SIO_000300: 1.387e1

VQSLOD
type: SiteQuality
SIO_000300: -5.59e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.21e-2

DP
type: SiteQuality
SIO_000300: 1.59004e5

ClippingRankSum
type: SiteQuality
SIO_000300: -9.409999999999999e-1

European (Non-Finnish)
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allele count: 10
allele frequency: 2.780867630700779e-3
allele num: 3596
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 7.575757575757576e-3
allele num: 132
num of homozygotes: 0

South Asian
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allele count: 207
allele frequency: 2.71796218487395e-2
allele num: 7616
num of homozygotes: 3

East Asian
type: Population
allele count: 3
allele frequency: 1.5e-2
allele num: 200
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 5.319148936170213e-3
allele num: 188
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.36e-2

FS
type: SiteQuality
SIO_000300: 1.132e0

DP
type: SiteQuality
SIO_000300: 1.66181e5

VQSLOD
type: SiteQuality
SIO_000300: 3.61e0

QD
type: SiteQuality
SIO_000300: 1.118e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.76e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.227e0

MQRankSum
type: SiteQuality
SIO_000300: 2.28e-1

MQ
type: SiteQuality
SIO_000300: 5.965e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.2e-2

European (Non-Finnish)
type: Population
allele count: 92
allele frequency: 3.458646616541353e-2
allele num: 2660
num of homozygotes: 2

East Asian
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allele count: 2
allele frequency: 1.515151515151515e-2
allele num: 132
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

African
type: Population
allele count: 5
allele frequency: 2.604166666666667e-2
allele num: 192
num of homozygotes: 0

South Asian
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allele count: 169
allele frequency: 2.303079858272009e-2
allele num: 7338
num of homozygotes: 2

Other
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allele frequency: 3.389830508474576e-2
allele num: 118
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.354e0

VQSLOD
type: SiteQuality
SIO_000300: 3.24e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.22e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.9e-2

MQRankSum
type: SiteQuality
SIO_000300: 3.21e-1

QD
type: SiteQuality
SIO_000300: 1.184e1

DP
type: SiteQuality
SIO_000300: 1.57449e5

BaseQRankSum
type: SiteQuality
SIO_000300: -1.528e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.26e-1

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 92
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Other
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allele count: 0
allele frequency: 0.0e0
allele num: 118
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African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 192
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 132
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 2662
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.25e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.370000000000001e-1

FS
type: SiteQuality
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QD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -3.72e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.949e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.61e-1

DP
type: SiteQuality
SIO_000300: 1.55965e5

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 132
num of homozygotes: 0

European (Non-Finnish)
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allele count: 31
allele frequency: 1.166290443942814e-2
allele num: 2658
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Other
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allele frequency: 8.474576271186441e-3
allele num: 118
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Latino
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allele count: 0
allele frequency: 0.0e0
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African
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allele frequency: 5.263157894736842e-3
allele num: 190
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.43e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.56e-1

QD
type: SiteQuality
SIO_000300: 1.054e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.24e-2

DP
type: SiteQuality
SIO_000300: 1.54362e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 2.817e0

MQRankSum
type: SiteQuality
SIO_000300: 4.2e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.9e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.38e0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 2660
num of homozygotes: 0

African
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allele count: 3
allele frequency: 1.578947368421053e-2
allele num: 190
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 132
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Other
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allele frequency: 0.0e0
allele num: 118
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South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 7342
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.166e0

QD
type: SiteQuality
SIO_000300: 1.05e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.31e-2

VQSLOD
type: SiteQuality
SIO_000300: 7.7e-2

MQRankSum
type: SiteQuality
SIO_000300: -1.58e-1

DP
type: SiteQuality
SIO_000300: 1.5215e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -8.070000000000001e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.58e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.26e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 92
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 118
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.736920777279522e-4
allele num: 2676
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 132
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 190
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 7370
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.583e0

MQRankSum
type: SiteQuality
SIO_000300: 7.24e-1

MQ
type: SiteQuality
SIO_000300: 5.945e1

FS
type: SiteQuality
SIO_000300: 2.086e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.97e-2

DP
type: SiteQuality
SIO_000300: 1.53748e5

ClippingRankSum
type: SiteQuality
SIO_000300: 1.13e0

VQSLOD
type: SiteQuality
SIO_000300: -1.988e0

QD
type: SiteQuality
SIO_000300: 1.277e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.71e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 92
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 132
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 190
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 3.734129947722181e-4
allele num: 2678
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 118
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South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 7366
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.843e1

QD
type: SiteQuality
SIO_000300: 5.36e0

DP
type: SiteQuality
SIO_000300: 1.53724e5

VQSLOD
type: SiteQuality
SIO_000300: -2.319e0

FS
type: SiteQuality
SIO_000300: 9.98e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.06e0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.95e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.27e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.91e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -2.56e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 132
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 118
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 5.263157894736842e-3
allele num: 190
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 2682
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 1.355748373101952e-4
allele num: 7376
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 92
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.68e-1

BaseQRankSum
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FS
type: SiteQuality
SIO_000300: 5.610000000000001e-1

QD
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InbreedingCoeff
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SIO_000300: -4.61e-2

MQ
type: SiteQuality
SIO_000300: 5.958e1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.3e-2

DP
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SIO_000300: 1.53177e5

VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 190
num of homozygotes: 0

South Asian
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allele count: 6
allele frequency: 8.130081300813008e-4
allele num: 7380
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 92
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East Asian
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 1
allele frequency: 3.728560775540641e-4
allele num: 2682
num of homozygotes: 0

Other
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BaseQRankSum
type: SiteQuality
SIO_000300: -3.96e-1

InbreedingCoeff
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VQSLOD
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DP
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ReadPosRankSum
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MQRankSum
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ClippingRankSum
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QD
type: SiteQuality
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FS
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MQ
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SIO_000300: 6.0e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 4

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 2664
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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South Asian
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allele frequency: 5.439216752787598e-4
allele num: 7354
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Latino
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Other
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East Asian
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ClippingRankSum
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SIO_000300: -6.32e-1

ReadPosRankSum
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VQSLOD
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DP
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MQRankSum
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MQ
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InbreedingCoeff
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FS
type: SiteQuality
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BaseQRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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East Asian
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African
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Latino
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: NaN
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 3.765060240963856e-4
allele num: 2656
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Other
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QD
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DP
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InbreedingCoeff
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FS
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MQ
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MQRankSum
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ClippingRankSum
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BaseQRankSum
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VQSLOD
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 2602
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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Latino
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African
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South Asian
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Other
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FS
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MQRankSum
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BaseQRankSum
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ReadPosRankSum
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VQSLOD
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MQ
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InbreedingCoeff
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ClippingRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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European (Finnish)
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East Asian
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Other
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African
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European (Non-Finnish)
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MQ
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QD
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VQSLOD
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ReadPosRankSum
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BaseQRankSum
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ClippingRankSum
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InbreedingCoeff
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FS
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MQRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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Latino
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South Asian
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Other
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African
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East Asian
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VQSLOD
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FS
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MQ
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BaseQRankSum
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ClippingRankSum
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InbreedingCoeff
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MQRankSum
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QD
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DP
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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European (Non-Finnish)
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African
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South Asian
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Other
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Latino
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QD
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ReadPosRankSum
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VQSLOD
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FS
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InbreedingCoeff
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BaseQRankSum
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MQRankSum
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DP
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MQ
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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European (Non-Finnish)
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European (Finnish)
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Latino
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African
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South Asian
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FS
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ReadPosRankSum
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VQSLOD
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BaseQRankSum
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ClippingRankSum
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InbreedingCoeff
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MQRankSum
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QD
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MQ
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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European (Non-Finnish)
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European (Finnish)
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Latino
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Other
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East Asian
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South Asian
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FS
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ReadPosRankSum
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MQ
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QD
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BaseQRankSum
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MQRankSum
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InbreedingCoeff
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VQSLOD
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DP
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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African
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Latino
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South Asian
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European (Non-Finnish)
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Other
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FS
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InbreedingCoeff
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ClippingRankSum
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MQRankSum
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ReadPosRankSum
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QD
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BaseQRankSum
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MQ
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VQSLOD
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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African
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East Asian
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Latino
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European (Non-Finnish)
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MQ
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FS
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InbreedingCoeff
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QD
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MQRankSum
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DP
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ReadPosRankSum
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ClippingRankSum
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VQSLOD
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GenotypeQuality
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South Asian
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European (Finnish)
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European (Non-Finnish)
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African
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East Asian
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DP
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QD
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FS
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VQSLOD
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MQ
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ClippingRankSum
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InbreedingCoeff
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 210
bin: 4.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7526
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.748679746791173e-5
allele num: 57186
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7918
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5520
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10618
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12342
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 716
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.187424e6

BaseQRankSum
type: SiteQuality
SIO_000300: -3.639e0

FS
type: SiteQuality
SIO_000300: 7.405e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.559e0

MQRankSum
type: SiteQuality
SIO_000300: 1.83e-1

QD
type: SiteQuality
SIO_000300: 1.048e1

VQSLOD
type: SiteQuality
SIO_000300: -4.752e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.45e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.2e-3

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10860
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5676
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13518
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7682
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.710688381004516e-5
allele num: 58456
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8026
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 732
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.224354e6

MQRankSum
type: SiteQuality
SIO_000300: -5.600000000000001e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.4e-3

VQSLOD
type: SiteQuality
SIO_000300: 8.35e-1

FS
type: SiteQuality
SIO_000300: 4.82e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.1e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.186e0

QD
type: SiteQuality
SIO_000300: 1.695e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5698
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8038
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.705262439889499e-5
allele num: 58642
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10886
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13734
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 736
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7700
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.9e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 7.16e-1

FS
type: SiteQuality
SIO_000300: 3.911e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.355e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.1e-3

MQRankSum
type: SiteQuality
SIO_000300: 5.37e-1

QD
type: SiteQuality
SIO_000300: 1.01e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.18e0

DP
type: SiteQuality
SIO_000300: 1.230292e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 756
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10930
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14044
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5756
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8072
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7742
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.698196515300751e-5
allele num: 58886
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.27e-1

QD
type: SiteQuality
SIO_000300: 1.402e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.8e-3

MQRankSum
type: SiteQuality
SIO_000300: -6.02e-1

FS
type: SiteQuality
SIO_000300: 4.175e0

DP
type: SiteQuality
SIO_000300: 1.240476e6

BaseQRankSum
type: SiteQuality
SIO_000300: -7.7e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.49e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.95e-1

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15030
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8158
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.534854245880862e-4
allele num: 7890
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 776
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5860
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 59750
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11060
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.87e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.4e-3

DP
type: SiteQuality
SIO_000300: 1.264725e6

QD
type: SiteQuality
SIO_000300: 7.73e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.05e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.18e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.001e0

MQRankSum
type: SiteQuality
SIO_000300: -7.199999999999999e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.05e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15204
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.672408602869853e-5
allele num: 59794
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8160
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7848
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 778
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5864
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11074
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.606e0

QD
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SIO_000300: 1.342e1

MQ
type: SiteQuality
SIO_000300: 5.443e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.5e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-3

MQRankSum
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ClippingRankSum
type: SiteQuality
SIO_000300: 1.38e0

BaseQRankSum
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SIO_000300: -1.38e0

FS
type: SiteQuality
SIO_000300: 7.971e0

DP
type: SiteQuality
SIO_000300: 1.265136e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 778
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11080
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7852
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8160
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15238
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.671290570578601e-5
allele num: 59834
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5872
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.082e1

MQRankSum
type: SiteQuality
SIO_000300: 4.67e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.9e-3

DP
type: SiteQuality
SIO_000300: 1.265119e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.4e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 3.31e0

BaseQRankSum
type: SiteQuality
SIO_000300: 8.87e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.25e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.648273111059403e-5
allele num: 60166
num of homozygotes: 0

South Asian
type: Population
allele count: 9
allele frequency: 5.774412934684974e-4
allele num: 15586
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.269035532994924e-3
allele num: 788
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5952
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11116
num of homozygotes: 0

East Asian
type: Population
allele count: 70
allele frequency: 8.532423208191127e-3
allele num: 8204
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7890
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.17e-1

VQSLOD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -2.6e-3

DP
type: SiteQuality
SIO_000300: 1.279294e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 1.92e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.2e-2

ReadPosRankSum
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.241e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
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bin: 7.75e1
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 499
bin: 8.25e1
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GenotypeQuality
all individuals: 142
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11130
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7940
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 1.16051593222587e-4
allele num: 60318
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15706
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8224
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 792
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5974
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.290348e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.200000000000001e-3

FS
type: SiteQuality
SIO_000300: 4.05e0

MQRankSum
type: SiteQuality
SIO_000300: -2.55e-1

VQSLOD
type: SiteQuality
SIO_000300: 9.57e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.28e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.38e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.1e0

QD
type: SiteQuality
SIO_000300: 1.201e1

GenotypeQuality
all individuals: 1008
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 204
bin: 9.75e1
variant carriers: 1

GenotypeQuality
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GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 185
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7940
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.366993505666624e-5
allele num: 15706
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60318
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5974
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11130
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8224
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 792
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.200000000000001e-3

FS
type: SiteQuality
SIO_000300: 4.05e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.201e1

MQRankSum
type: SiteQuality
SIO_000300: -2.55e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.1e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.28e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.38e-1

VQSLOD
type: SiteQuality
SIO_000300: 9.57e-1

DP
type: SiteQuality
SIO_000300: 1.290348e6

GenotypeQuality
all individuals: 3447
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1100
bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.35970490969219e-5
allele num: 15724
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8224
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11132
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5968
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 792
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60344
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7938
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.6e-1

QD
type: SiteQuality
SIO_000300: 9.92e0

MQRankSum
type: SiteQuality
SIO_000300: -4.6e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.074e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.29421e6

FS
type: SiteQuality
SIO_000300: 3.319e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.3e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 2.41e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.69e-1

GenotypeQuality
all individuals: 818
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 804
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1131
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 201
bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11166
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8250
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5990
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.650818806127839e-5
allele num: 60576
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15808
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 802
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7976
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.291e1

MQRankSum
type: SiteQuality
SIO_000300: 1.99e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.482e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.99e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.561e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.42e-1

MQ
type: SiteQuality
SIO_000300: 5.865e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.9e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.302729e6

GenotypeQuality
all individuals: 1154
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1913
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variant carriers: 0

GenotypeQuality
all individuals: 196
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 791
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 438
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variant carriers: 0

GenotypeQuality
all individuals: 203
bin: 9.75e1
variant carriers: 3

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 798
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8046
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60734
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15876
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.78858880343409e-4
allele num: 11182
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.207437816952427e-4
allele num: 8282
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6026
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.311557e6

ClippingRankSum
type: SiteQuality
SIO_000300: -7.64e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.38e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.8e-3

VQSLOD
type: SiteQuality
SIO_000300: 5.620000000000001e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -4.4e-1

MQ
type: SiteQuality
SIO_000300: 5.952e1

BaseQRankSum
type: SiteQuality
SIO_000300: 8.87e-1

QD
type: SiteQuality
SIO_000300: 1.596e1

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 149
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GenotypeQuality
all individuals: 44386
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6176
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16118
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61630
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.200768491834774e-4
allele num: 8328
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.769911504424779e-4
allele num: 11300
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 818
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8402
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.0e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -3.837e0

MQRankSum
type: SiteQuality
SIO_000300: 1.78e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.56e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.8e-3

DP
type: SiteQuality
SIO_000300: 1.342966e6

MQ
type: SiteQuality
SIO_000300: 5.961e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.89e-1

FS
type: SiteQuality
SIO_000300: 5.177e0

QD
type: SiteQuality
SIO_000300: 1.074e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8416
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 816
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8326
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16128
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6190
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11302
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.622112639501687e-5
allele num: 61648
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.343809e6

FS
type: SiteQuality
SIO_000300: 2.456e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.385e0

MQRankSum
type: SiteQuality
SIO_000300: 9.74e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.41e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.24e0

VQSLOD
type: SiteQuality
SIO_000300: -1.554e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.3e-3

QD
type: SiteQuality
SIO_000300: 1.155e1

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 322
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GenotypeQuality
all individuals: 5608
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11316
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6186
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8428
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.619485651357129e-5
allele num: 61748
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8386
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 818
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16148
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.348952e6

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.07e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.07e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.15e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.3e-3

FS
type: SiteQuality
SIO_000300: 8.161e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 3.85e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -9.370000000000001e-1

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
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bin: 7.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 1.75e1
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GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 44349
bin: 6.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16148
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11316
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8386
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6186
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.477942605428517e-5
allele num: 61748
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8428
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 818
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.15e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 8.161e0

MQRankSum
type: SiteQuality
SIO_000300: 3.85e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.3e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -9.370000000000001e-1

QD
type: SiteQuality
SIO_000300: 1.07e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.07e-1

DP
type: SiteQuality
SIO_000300: 1.348952e6

GenotypeQuality
all individuals: 120
bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.237164419151305e-4
allele num: 16166
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 822
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6198
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.236664940445365e-5
allele num: 61792
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8434
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8418
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11320
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.9e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 1.65e0

QD
type: SiteQuality
SIO_000300: 1.504e1

FS
type: SiteQuality
SIO_000300: 5.31e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.26e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.24e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.96e-1

DP
type: SiteQuality
SIO_000300: 1.350369e6

MQ
type: SiteQuality
SIO_000300: 5.947e1

MQRankSum
type: SiteQuality
SIO_000300: -1.81e-1

GenotypeQuality
all individuals: 303
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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bin: 5.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6202
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.616448984870038e-5
allele num: 61864
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 824
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11326
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8450
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16176
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8444
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.038e1

VQSLOD
type: SiteQuality
SIO_000300: 5.669999999999999e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.482e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.6e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.29e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 2.414e0

MQRankSum
type: SiteQuality
SIO_000300: -4.79e-1

DP
type: SiteQuality
SIO_000300: 1.350864e6

ClippingRankSum
type: SiteQuality
SIO_000300: 4.42e-1

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 41

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 222
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 152
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 826
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61936
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6220
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8456
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11334
num of homozygotes: 0

South Asian
type: Population
allele count: 42
allele frequency: 2.59227255894334e-3
allele num: 16202
num of homozygotes: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8494
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.38e-1

DP
type: SiteQuality
SIO_000300: 1.355072e6

BaseQRankSum
type: SiteQuality
SIO_000300: -3.4e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.2e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.44e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 2.95e0

FS
type: SiteQuality
SIO_000300: 1.797e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.4e-2

QD
type: SiteQuality
SIO_000300: 1.446e1

GenotypeQuality
all individuals: 298
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 165
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
all individuals: 1504
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1264
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 830
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6228
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62010
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8576
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11334
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16222
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.181753722524226e-4
allele num: 8462
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.21e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.3e-3

VQSLOD
type: SiteQuality
SIO_000300: -2.5e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.33e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.88e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.6e-1

DP
type: SiteQuality
SIO_000300: 1.358446e6

MQ
type: SiteQuality
SIO_000300: 5.824e1

FS
type: SiteQuality
SIO_000300: 1.194e0

QD
type: SiteQuality
SIO_000300: 8.99e0

GenotypeQuality
all individuals: 311
bin: 9.75e1
variant carriers: 111

GenotypeQuality
all individuals: 235
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variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 297
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 150
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GenotypeQuality
all individuals: 44548
bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8470
num of homozygotes: 0

African
type: Population
allele count: 102
allele frequency: 1.182745825602968e-2
allele num: 8624
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62064
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6234
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.231072263941894e-4
allele num: 16246
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 830
num of homozygotes: 0

Latino
type: Population
allele count: 5
allele frequency: 4.406062742333451e-4
allele num: 11348
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.26e-1

FS
type: SiteQuality
SIO_000300: 1.103e0

BaseQRankSum
type: SiteQuality
SIO_000300: 9.47e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.2e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.11e-1

DP
type: SiteQuality
SIO_000300: 1.362316e6

ClippingRankSum
type: SiteQuality
SIO_000300: -2.18e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.323e1

GenotypeQuality
all individuals: 167
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 232
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variant carriers: 28

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1512
bin: 7.25e1
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GenotypeQuality
all individuals: 563
bin: 8.25e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6248
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11354
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.438942725604456e-5
allele num: 62122
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8474
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.230920728705071e-4
allele num: 16248
num of homozygotes: 0

African
type: Population
allele count: 23
allele frequency: 2.6583448913546e-3
allele num: 8652
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 832
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.5e-2

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.232e1

DP
type: SiteQuality
SIO_000300: 1.361791e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.2e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 2.43e0

FS
type: SiteQuality
SIO_000300: 1.113e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.55e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.35e-1

GenotypeQuality
all individuals: 313
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1087
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 408
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 209
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GenotypeQuality
all individuals: 195
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GenotypeQuality
all individuals: 1531
bin: 7.25e1
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GenotypeQuality
all individuals: 151
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11374
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62256
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.146263182026593e-4
allele num: 8724
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16296
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8480
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6266
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 836
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.31e0

DP
type: SiteQuality
SIO_000300: 1.36504e6

VQSLOD
type: SiteQuality
SIO_000300: -9.137999999999999e-1

MQ
type: SiteQuality
SIO_000300: 5.87e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.41e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.4e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.82e0

QD
type: SiteQuality
SIO_000300: 1.078e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.97e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.67e-1

GenotypeQuality
all individuals: 145
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 781
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 258
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2743
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 2.5e0
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GenotypeQuality
all individuals: 198
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1547
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 119
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 45480
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 394
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1296
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 140
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 398
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 580
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 94
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 207
bin: 9.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6312
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16348
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.776549060909251e-5
allele num: 11394
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8510
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 838
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62596
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8940
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.17e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.8e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.821e0

FS
type: SiteQuality
SIO_000300: 9.54e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.75e0

MQRankSum
type: SiteQuality
SIO_000300: 3.95e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.7e-3

DP
type: SiteQuality
SIO_000300: 1.374399e6

VQSLOD
type: SiteQuality
SIO_000300: 7.32e-1

GenotypeQuality
all individuals: 2599
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 445
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 152
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 114
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variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 429
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 572
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 45474
bin: 6.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 858
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16386
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6350
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.750700280112045e-4
allele num: 11424
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63122
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8522
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.077586206896552e-4
allele num: 9280
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.97e0

VQSLOD
type: SiteQuality
SIO_000300: 9.56e-1

MQRankSum
type: SiteQuality
SIO_000300: -8.599999999999999e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.9e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.43e0

DP
type: SiteQuality
SIO_000300: 1.384067e6

BaseQRankSum
type: SiteQuality
SIO_000300: 7.42e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.2e-1

QD
type: SiteQuality
SIO_000300: 1.329e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 440
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 155
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2585
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 186
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1546
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variant carriers: 0

GenotypeQuality
all individuals: 324
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 193
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 80
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 209
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 45480
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1294
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 296
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 572
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.17343346632246e-4
allele num: 8522
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16388
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63146
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 858
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9300
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6352
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11426
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.74e-1

QD
type: SiteQuality
SIO_000300: 1.083e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.5e-3

MQ
type: SiteQuality
SIO_000300: 5.967e1

VQSLOD
type: SiteQuality
SIO_000300: 9.47e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.2e0

FS
type: SiteQuality
SIO_000300: 1.038e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.21e-1

DP
type: SiteQuality
SIO_000300: 1.384395e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.051e0

GenotypeQuality
all individuals: 69
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 379
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variant carriers: 0

GenotypeQuality
all individuals: 290
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variant carriers: 0

GenotypeQuality
all individuals: 1560
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 404
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variant carriers: 0

GenotypeQuality
all individuals: 235
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variant carriers: 0

GenotypeQuality
all individuals: 5922
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variant carriers: 0

GenotypeQuality
all individuals: 424
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variant carriers: 0

GenotypeQuality
all individuals: 306
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variant carriers: 0

GenotypeQuality
all individuals: 148
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variant carriers: 0

GenotypeQuality
all individuals: 271
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variant carriers: 0

GenotypeQuality
all individuals: 178
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 213
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 579
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1299
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 151
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6368
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11446
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 860
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9536
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16416
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.287726358148894e-5
allele num: 63616
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8544
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.68e0

FS
type: SiteQuality
SIO_000300: 6.938e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -8.599999999999999e-2

DP
type: SiteQuality
SIO_000300: 1.394295e6

QD
type: SiteQuality
SIO_000300: 1.257e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.24e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.97e-1

MQ
type: SiteQuality
SIO_000300: 5.97e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.179999999999999e-1

GenotypeQuality
all individuals: 210
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 407
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5958
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variant carriers: 0

GenotypeQuality
all individuals: 211
bin: 9.75e1
variant carriers: 2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 46224
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 256
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GenotypeQuality
all individuals: 27
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GenotypeQuality
all individuals: 581
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 380
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variant carriers: 0

GenotypeQuality
all individuals: 1310
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 97
bin: 1.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9610
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11454
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 860
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8548
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63738
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.217730150998539e-4
allele num: 16424
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6390
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.048e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.82e0

FS
type: SiteQuality
SIO_000300: 6.381e0

QD
type: SiteQuality
SIO_000300: 1.223e1

VQSLOD
type: SiteQuality
SIO_000300: 5.23e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.18e-1

DP
type: SiteQuality
SIO_000300: 1.397467e6

MQRankSum
type: SiteQuality
SIO_000300: 3.9e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

GenotypeQuality
all individuals: 13
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 82
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 379
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 210
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 196
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11462
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6390
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 862
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16438
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63952
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8548
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.032204789430223e-4
allele num: 9688
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 3.1e-2

MQRankSum
type: SiteQuality
SIO_000300: -5.85e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.2e0

VQSLOD
type: SiteQuality
SIO_000300: 2.76e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.400907e6

QD
type: SiteQuality
SIO_000300: 1.002e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.416e0

GenotypeQuality
all individuals: 46282
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
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GenotypeQuality
all individuals: 417
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GenotypeQuality
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GenotypeQuality
all individuals: 6015
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GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
all individuals: 275
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 217
bin: 9.75e1
variant carriers: 8

GenotypeQuality
all individuals: 382
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1307
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 582
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 8
allele frequency: 1.24785524879114e-4
allele num: 64110
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16448
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6402
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11470
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9742
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8556
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.045e0

MQRankSum
type: SiteQuality
SIO_000300: -8.9e-2

QD
type: SiteQuality
SIO_000300: 1.265e1

FS
type: SiteQuality
SIO_000300: 2.686e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.98e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.13e0

DP
type: SiteQuality
SIO_000300: 1.403547e6

MQ
type: SiteQuality
SIO_000300: 5.975e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.83e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.3e-3

GenotypeQuality
all individuals: 57
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 140
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 380
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 181
bin: 7.5e0
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GenotypeQuality
all individuals: 233
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 154
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GenotypeQuality
all individuals: 395
bin: 3.25e1
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GenotypeQuality
all individuals: 175
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 261
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 288
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1927
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 1.75e1
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GenotypeQuality
all individuals: 199
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GenotypeQuality
all individuals: 18
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 217
bin: 9.75e1
variant carriers: 10

GenotypeQuality
all individuals: 46464
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6040
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1596
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 8
allele frequency: 1.245019920318725e-4
allele num: 64256
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8564
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.74246384387524e-4
allele num: 11478
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16450
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6420
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9790
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.79e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.32e0

FS
type: SiteQuality
SIO_000300: 5.18e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -4.53e-1

QD
type: SiteQuality
SIO_000300: 1.203e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.1e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 9.88e-1

DP
type: SiteQuality
SIO_000300: 1.407908e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.03e-1

GenotypeQuality
all individuals: 394
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 300
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 46533
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 163
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6077
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 151
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1612
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 200
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 380
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 210
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 593
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1350
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 284
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 260
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 96
bin: 5.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9860
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11482
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6418
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8572
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16466
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.551879325863621e-5
allele num: 64438
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 7.3e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.409897e6

MQRankSum
type: SiteQuality
SIO_000300: -1.82e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.1e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 2.31e0

QD
type: SiteQuality
SIO_000300: 1.008e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.47e-1

GenotypeQuality
all individuals: 382
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 210
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 155
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1808
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 152
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 292
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1350
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 157
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6081
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 385
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1614
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 295
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 594
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 46515
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 272
bin: 4.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8572
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6422
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9860
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64464
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.074596039363382e-5
allele num: 16462
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11478
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.133e0

DP
type: SiteQuality
SIO_000300: 1.410202e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -1.055e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.369e1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.55e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.56e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.986e0

GenotypeQuality
all individuals: 377
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 210
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 589
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 281
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 156
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 141
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 292
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 260
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 153
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 46602
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 202
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6108
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1613
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1354
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 382
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1749
bin: 2.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8574
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9880
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11482
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6426
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.073120369245719e-5
allele num: 16466
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64536
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -7.274e-1

FS
type: SiteQuality
SIO_000300: 1.0245e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -2.047e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.13e0

MQ
type: SiteQuality
SIO_000300: 5.957e1

MQRankSum
type: SiteQuality
SIO_000300: 8.67e-1

DP
type: SiteQuality
SIO_000300: 1.411243e6

ClippingRankSum
type: SiteQuality
SIO_000300: -6.77e-1

QD
type: SiteQuality
SIO_000300: 1.195e1