2-99766927-CTT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99766927
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 99766925
    reference: chr 2
allele count: 1527
allele frequency: 2.201747556016957e-2
allele num: 69354
alternate allele: C
canonical: false
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1715
  bin: 3.75e1
  variant carriers: 59
genotype depth: GenotypeDepth
  all individuals: 12011
  bin: 1.25e1
  variant carriers: 408
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 4.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 5.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 3320
  bin: 3.25e1
  variant carriers: 132
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5769
  bin: 7.5e0
  variant carriers: 67
genotype depth: GenotypeDepth
  all individuals: 15052
  bin: 1.75e1
  variant carriers: 621
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 935
  bin: 4.25e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 877
  bin: 2.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 11729
  bin: 2.25e1
  variant carriers: 614
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6761
  bin: 2.75e1
  variant carriers: 308
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2297
  bin: 4.25e1
  variant carriers: 113
genotype quality: GenotypeQuality
  all individuals: 1767
  bin: 7.25e1
  variant carriers: 117
genotype quality: GenotypeQuality
  all individuals: 1653
  bin: 1.75e1
  variant carriers: 131
genotype quality: GenotypeQuality
  all individuals: 1564
  bin: 7.75e1
  variant carriers: 80
genotype quality: GenotypeQuality
  all individuals: 8590
  bin: 9.75e1
  variant carriers: 204
genotype quality: GenotypeQuality
  all individuals: 2303
  bin: 4.75e1
  variant carriers: 85
genotype quality: GenotypeQuality
  all individuals: 1463
  bin: 8.25e1
  variant carriers: 77
genotype quality: GenotypeQuality
  all individuals: 2372
  bin: 5.25e1
  variant carriers: 109
genotype quality: GenotypeQuality
  all individuals: 2003
  bin: 2.75e1
  variant carriers: 118
genotype quality: GenotypeQuality
  all individuals: 2118
  bin: 3.75e1
  variant carriers: 87
genotype quality: GenotypeQuality
  all individuals: 17162
  bin: 2.5e0
  variant carriers: 202
genotype quality: GenotypeQuality
  all individuals: 2074
  bin: 6.25e1
  variant carriers: 89
genotype quality: GenotypeQuality
  all individuals: 1532
  bin: 1.25e1
  variant carriers: 110
genotype quality: GenotypeQuality
  all individuals: 2189
  bin: 7.5e0
  variant carriers: 230
genotype quality: GenotypeQuality
  all individuals: 2020
  bin: 3.25e1
  variant carriers: 107
genotype quality: GenotypeQuality
  all individuals: 1185
  bin: 9.25e1
  variant carriers: 34
genotype quality: GenotypeQuality
  all individuals: 1237
  bin: 8.75e1
  variant carriers: 61
genotype quality: GenotypeQuality
  all individuals: 2174
  bin: 5.75e1
  variant carriers: 106
genotype quality: GenotypeQuality
  all individuals: 1997
  bin: 2.25e1
  variant carriers: 112
genotype quality: GenotypeQuality
  all individuals: 1888
  bin: 6.75e1
  variant carriers: 90
num of homozygotes: 0
population: Latino
  type: Population
  allele count: 219
  allele frequency: 2.995896032831737e-2
  allele num: 7310
  num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 130
  allele frequency: 2.308238636363636e-2
  allele num: 5632
  num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 844
  allele frequency: 2.172793739058799e-2
  allele num: 38844
  num of homozygotes: 0
population: African
  type: Population
  allele count: 119
  allele frequency: 2.043269230769231e-2
  allele num: 5824
  num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Other
reference allele: CTT
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: QD

2-99766927-CTTT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99766927
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 99766924
    reference: chr 2
allele count: 53
allele frequency: 7.641952879430169e-4
allele num: 69354
alternate allele: C
canonical: false
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3320
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11729
  bin: 2.25e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6761
  bin: 2.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1715
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 5769
  bin: 7.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 12011
  bin: 1.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 15052
  bin: 1.75e1
  variant carriers: 30
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 877
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 935
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2003
  bin: 2.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 2074
  bin: 6.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2174
  bin: 5.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 17162
  bin: 2.5e0
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 1888
  bin: 6.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1767
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2189
  bin: 7.5e0
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 2303
  bin: 4.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1532
  bin: 1.25e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 2118
  bin: 3.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 8590
  bin: 9.75e1
  variant carriers: 16
genotype quality: GenotypeQuality
  all individuals: 1653
  bin: 1.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 2372
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1185
  bin: 9.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 2297
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1237
  bin: 8.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 1564
  bin: 7.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 1997
  bin: 2.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 2020
  bin: 3.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1463
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 31
  allele frequency: 7.980640510760993e-4
  allele num: 38844
  num of homozygotes: 0
population: African
  type: Population
  allele count: 6
  allele frequency: 1.03021978021978e-3
  allele num: 5824
  num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 1
  allele frequency: 2.106149957877001e-4
  allele num: 4748
  num of homozygotes: 0
population: Latino
  type: Population
  allele count: 6
  allele frequency: 8.207934336525308e-4
  allele num: 7310
  num of homozygotes: 0
population: East Asian
population: Other
population: South Asian
reference allele: CTTT
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: DP

2-99766941-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99766941
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 99766941
    reference: chr 2
allele count: 4
allele frequency: 3.638149637094574e-5
allele num: 109946
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000483914
  gene symbol: TSGA10
  hgvsc: ENST00000483914.1:n.171-2130A>G
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000241962
  ensembl protein: ENSP00000390891
  ensembl transcript: ENST00000424491
  gene symbol: C2orf15
  hgvsc: ENST00000424491.1:c.27-5T>C
  variant of: http://identifiers.org/hgnc/28436
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000476849
  gene symbol: TSGA10
  hgvsc: ENST00000476849.1:n.272+4215A>G
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl protein: ENSP00000377123
  ensembl transcript: ENST00000393483
  gene symbol: TSGA10
  hgvsc: ENST00000393483.3:c.-621+4215A>G
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000471174
  gene symbol: TSGA10
  hgvsc: ENST00000471174.1:n.270+4215A>G
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000465216
  gene symbol: TSGA10
  hgvsc: ENST00000465216.1:n.199-2130A>G
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000273045
  ensembl protein: ENSP00000302202
  ensembl transcript: ENST00000302513
  gene symbol: C2ORF15
  hgvsc: ENST00000302513.2:c.27-5T>C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000273045
  ensembl protein: ENSP00000386654
  ensembl transcript: ENST00000409684
  gene symbol: C2ORF15
  hgvsc: ENST00000409684.1:c.27-5T>C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000498097
  gene symbol: TSGA10
  hgvsc: ENST00000498097.1:n.347-2130A>G
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000489348
  gene symbol: TSGA10
  hgvsc: ENST00000489348.1:n.307-2130A>G
  variant of: http://identifiers.org/hgnc/14927
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1063
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7292
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4144
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3343
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1717
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9363
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1116
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8148
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14553
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8238
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 645
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 707
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24028
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1059
  bin: 4.25e1
  variant carriers: 0
hgvs: c.27-5T>C
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Latino
population: Other
reference allele: T
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD

2-99766942-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99766942
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 99766942
    reference: chr 2
allele count: 7
allele frequency: 6.397952655150352e-5
allele num: 109410
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000471174
  gene symbol: TSGA10
  hgvsc: ENST00000471174.1:n.270+4214A>G
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000483914
  gene symbol: TSGA10
  hgvsc: ENST00000483914.1:n.171-2131A>G
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000465216
  gene symbol: TSGA10
  hgvsc: ENST00000465216.1:n.199-2131A>G
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl protein: ENSP00000377123
  ensembl transcript: ENST00000393483
  gene symbol: TSGA10
  hgvsc: ENST00000393483.3:c.-621+4214A>G
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000241962
  ensembl protein: ENSP00000390891
  ensembl transcript: ENST00000424491
  gene symbol: C2orf15
  hgvsc: ENST00000424491.1:c.27-4T>C
  variant of: http://identifiers.org/hgnc/28436
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000489348
  gene symbol: TSGA10
  hgvsc: ENST00000489348.1:n.307-2131A>G
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000476849
  gene symbol: TSGA10
  hgvsc: ENST00000476849.1:n.272+4214A>G
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000273045
  ensembl protein: ENSP00000302202
  ensembl transcript: ENST00000302513
  gene symbol: C2ORF15
  hgvsc: ENST00000302513.2:c.27-4T>C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000273045
  ensembl protein: ENSP00000386654
  ensembl transcript: ENST00000409684
  gene symbol: C2ORF15
  hgvsc: ENST00000409684.1:c.27-4T>C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000498097
  gene symbol: TSGA10
  hgvsc: ENST00000498097.1:n.347-2131A>G
  variant of: http://identifiers.org/hgnc/14927
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14801
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7208
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9880
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1715
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7695
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1021
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4173
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8107
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3284
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 648
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1109
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 248
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9295
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 358
  bin: 2.5e0
  variant carriers: 0
hgvs: c.27-4T>C
num of homozygotes: 0
population: South Asian
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
reference allele: T
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum

2-99766947-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99766947
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 99766947
    reference: chr 2
allele count: 2
allele frequency: 1.799370220422852e-5
allele num: 111150
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000483914
  gene symbol: TSGA10
  hgvsc: ENST00000483914.1:n.171-2136T>C
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000498097
  gene symbol: TSGA10
  hgvsc: ENST00000498097.1:n.347-2136T>C
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl protein: ENSP00000377123
  ensembl transcript: ENST00000393483
  gene symbol: TSGA10
  hgvsc: ENST00000393483.3:c.-621+4209T>C
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000273045
  ensembl protein: ENSP00000386654
  ensembl transcript: ENST00000409684
  gene symbol: C2ORF15
  hgvsc: ENST00000409684.1:c.28A>G
  hgvsp: ENSP00000386654.1:p.Asn10Asp
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000489348
  gene symbol: TSGA10
  hgvsc: ENST00000489348.1:n.307-2136T>C
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000465216
  gene symbol: TSGA10
  hgvsc: ENST00000465216.1:n.199-2136T>C
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000273045
  ensembl protein: ENSP00000302202
  ensembl transcript: ENST00000302513
  gene symbol: C2ORF15
  hgvsc: ENST00000302513.2:c.28A>G
  hgvsp: ENSP00000302202.2:p.Asn10Asp
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000241962
  ensembl protein: ENSP00000390891
  ensembl transcript: ENST00000424491
  gene symbol: C2orf15
  hgvsc: ENST00000424491.1:c.28A>G
  hgvsp: ENSP00000390891.1:p.Asn10Asp
  variant of: http://identifiers.org/hgnc/28436
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000471174
  gene symbol: TSGA10
  hgvsc: ENST00000471174.1:n.270+4209T>C
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000476849
  gene symbol: TSGA10
  hgvsc: ENST00000476849.1:n.272+4209T>C
  variant of: http://identifiers.org/hgnc/14927
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 749
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6069
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3942
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6657
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4315
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16152
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1989
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17821
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1067
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30598
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6466
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Asn10Asp
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: Latino
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum

2-99766948-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99766948
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 99766948
    reference: chr 2
allele count: 1
allele frequency: 8.98311174991017e-6
allele num: 111320
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000483914
  gene symbol: TSGA10
  hgvsc: ENST00000483914.1:n.171-2137T>C
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000273045
  ensembl protein: ENSP00000386654
  ensembl transcript: ENST00000409684
  gene symbol: C2ORF15
  hgvsc: ENST00000409684.1:c.29A>G
  hgvsp: ENSP00000386654.1:p.Asn10Ser
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl protein: ENSP00000377123
  ensembl transcript: ENST00000393483
  gene symbol: TSGA10
  hgvsc: ENST00000393483.3:c.-621+4208T>C
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000489348
  gene symbol: TSGA10
  hgvsc: ENST00000489348.1:n.307-2137T>C
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000273045
  ensembl protein: ENSP00000302202
  ensembl transcript: ENST00000302513
  gene symbol: C2ORF15
  hgvsc: ENST00000302513.2:c.29A>G
  hgvsp: ENSP00000302202.2:p.Asn10Ser
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000241962
  ensembl protein: ENSP00000390891
  ensembl transcript: ENST00000424491
  gene symbol: C2orf15
  hgvsc: ENST00000424491.1:c.29A>G
  hgvsp: ENSP00000390891.1:p.Asn10Ser
  variant of: http://identifiers.org/hgnc/28436
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000465216
  gene symbol: TSGA10
  hgvsc: ENST00000465216.1:n.199-2137T>C
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000476849
  gene symbol: TSGA10
  hgvsc: ENST00000476849.1:n.272+4208T>C
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000471174
  gene symbol: TSGA10
  hgvsc: ENST00000471174.1:n.270+4208T>C
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000498097
  gene symbol: TSGA10
  hgvsc: ENST00000498097.1:n.347-2137T>C
  variant of: http://identifiers.org/hgnc/14927
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5805
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1068
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4305
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 749
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3195
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17124
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1988
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17923
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6665
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 172
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Asn10Ser
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Other
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
reference allele: A
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: DP

2-99766954-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99766954
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 99766954
    reference: chr 2
allele count: 1
allele frequency: 8.899489169321681e-6
allele num: 112366
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000476849
  gene symbol: TSGA10
  hgvsc: ENST00000476849.1:n.272+4202A>G
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000471174
  gene symbol: TSGA10
  hgvsc: ENST00000471174.1:n.270+4202A>G
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000273045
  ensembl protein: ENSP00000386654
  ensembl transcript: ENST00000409684
  gene symbol: C2ORF15
  hgvsc: ENST00000409684.1:c.35T>C
  hgvsp: ENSP00000386654.1:p.Val12Ala
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000273045
  ensembl protein: ENSP00000302202
  ensembl transcript: ENST00000302513
  gene symbol: C2ORF15
  hgvsc: ENST00000302513.2:c.35T>C
  hgvsp: ENSP00000302202.2:p.Val12Ala
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000498097
  gene symbol: TSGA10
  hgvsc: ENST00000498097.1:n.347-2143A>G
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000241962
  ensembl protein: ENSP00000390891
  ensembl transcript: ENST00000424491
  gene symbol: C2orf15
  hgvsc: ENST00000424491.1:c.35T>C
  hgvsp: ENSP00000390891.1:p.Val12Ala
  variant of: http://identifiers.org/hgnc/28436
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000483914
  gene symbol: TSGA10
  hgvsc: ENST00000483914.1:n.171-2143A>G
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000465216
  gene symbol: TSGA10
  hgvsc: ENST00000465216.1:n.199-2143A>G
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000489348
  gene symbol: TSGA10
  hgvsc: ENST00000489348.1:n.307-2143A>G
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl protein: ENSP00000377123
  ensembl transcript: ENST00000393483
  gene symbol: TSGA10
  hgvsc: ENST00000393483.3:c.-621+4202A>G
  variant of: http://identifiers.org/hgnc/14927
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2004
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1069
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 753
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4127
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6785
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1172
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4093
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18799
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20311
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 374
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5674
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Val12Ala
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
population: African
population: South Asian
population: Other
reference allele: T
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff

2-99766981-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99766981
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 99766981
    reference: chr 2
allele count: 2
allele frequency: 1.689931388785615e-5
allele num: 118348
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000489348
  gene symbol: TSGA10
  hgvsc: ENST00000489348.1:n.307-2170T>C
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000465216
  gene symbol: TSGA10
  hgvsc: ENST00000465216.1:n.199-2170T>C
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl protein: ENSP00000377123
  ensembl transcript: ENST00000393483
  gene symbol: TSGA10
  hgvsc: ENST00000393483.3:c.-621+4175T>C
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000273045
  ensembl protein: ENSP00000302202
  ensembl transcript: ENST00000302513
  gene symbol: C2ORF15
  hgvsc: ENST00000302513.2:c.62A>G
  hgvsp: ENSP00000302202.2:p.Lys21Arg
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000476849
  gene symbol: TSGA10
  hgvsc: ENST00000476849.1:n.272+4175T>C
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000241962
  ensembl protein: ENSP00000390891
  ensembl transcript: ENST00000424491
  gene symbol: C2orf15
  hgvsc: ENST00000424491.1:c.62A>G
  hgvsp: ENSP00000390891.1:p.Lys21Arg
  variant of: http://identifiers.org/hgnc/28436
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000273045
  ensembl protein: ENSP00000386654
  ensembl transcript: ENST00000409684
  gene symbol: C2ORF15
  hgvsc: ENST00000409684.1:c.62A>G
  hgvsp: ENSP00000386654.1:p.Lys21Arg
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000471174
  gene symbol: TSGA10
  hgvsc: ENST00000471174.1:n.270+4175T>C
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000483914
  gene symbol: TSGA10
  hgvsc: ENST00000483914.1:n.171-2170T>C
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000498097
  gene symbol: TSGA10
  hgvsc: ENST00000498097.1:n.347-2170T>C
  variant of: http://identifiers.org/hgnc/14927
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 788
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1451
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21312
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24595
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 713
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7372
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2025
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1033
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1612
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Lys21Arg
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: Latino
reference allele: A
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: InbreedingCoeff

2-99767001-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99767001
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 99767001
    reference: chr 2
allele count: 1
allele frequency: 8.307165761185599e-6
allele num: 120378
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000273045
  ensembl protein: ENSP00000302202
  ensembl transcript: ENST00000302513
  gene symbol: C2ORF15
  hgvsc: ENST00000302513.2:c.82C>T
  hgvsp: ENSP00000302202.2:p.His28Tyr
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000471174
  gene symbol: TSGA10
  hgvsc: ENST00000471174.1:n.270+4155G>A
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl protein: ENSP00000377123
  ensembl transcript: ENST00000393483
  gene symbol: TSGA10
  hgvsc: ENST00000393483.3:c.-621+4155G>A
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000465216
  gene symbol: TSGA10
  hgvsc: ENST00000465216.1:n.199-2190G>A
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000476849
  gene symbol: TSGA10
  hgvsc: ENST00000476849.1:n.272+4155G>A
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241962
  ensembl protein: ENSP00000390891
  ensembl transcript: ENST00000424491
  gene symbol: C2orf15
  hgvsc: ENST00000424491.1:c.63+19C>T
  variant of: http://identifiers.org/hgnc/28436
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000498097
  gene symbol: TSGA10
  hgvsc: ENST00000498097.1:n.347-2190G>A
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000273045
  ensembl protein: ENSP00000386654
  ensembl transcript: ENST00000409684
  gene symbol: C2ORF15
  hgvsc: ENST00000409684.1:c.82C>T
  hgvsp: ENSP00000386654.1:p.His28Tyr
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000483914
  gene symbol: TSGA10
  hgvsc: ENST00000483914.1:n.171-2190G>A
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000489348
  gene symbol: TSGA10
  hgvsc: ENST00000489348.1:n.307-2190G>A
  variant of: http://identifiers.org/hgnc/14927
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2030
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22103
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7509
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 710
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25310
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1042
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2074
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7828
  bin: 6.75e1
  variant carriers: 0
hgvs: p.His28Tyr
num of homozygotes: 0
population: East Asian
population: Latino
population: Other
population: European (Finnish)
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum

2-99767006-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99767006
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 99767006
    reference: chr 2
allele count: 2
allele frequency: 1.658402295228776e-5
allele num: 120598
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000489348
  gene symbol: TSGA10
  hgvsc: ENST00000489348.1:n.307-2195A>C
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000273045
  ensembl protein: ENSP00000302202
  ensembl transcript: ENST00000302513
  gene symbol: C2ORF15
  hgvsc: ENST00000302513.2:c.87T>G
  hgvsp: ENSP00000302202.2:p.Ile29Met
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000498097
  gene symbol: TSGA10
  hgvsc: ENST00000498097.1:n.347-2195A>C
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000465216
  gene symbol: TSGA10
  hgvsc: ENST00000465216.1:n.199-2195A>C
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241962
  ensembl protein: ENSP00000390891
  ensembl transcript: ENST00000424491
  gene symbol: C2orf15
  hgvsc: ENST00000424491.1:c.63+24T>G
  variant of: http://identifiers.org/hgnc/28436
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl protein: ENSP00000377123
  ensembl transcript: ENST00000393483
  gene symbol: TSGA10
  hgvsc: ENST00000393483.3:c.-621+4150A>C
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000471174
  gene symbol: TSGA10
  hgvsc: ENST00000471174.1:n.270+4150A>C
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000273045
  ensembl protein: ENSP00000386654
  ensembl transcript: ENST00000409684
  gene symbol: C2ORF15
  hgvsc: ENST00000409684.1:c.87T>G
  hgvsp: ENSP00000386654.1:p.Ile29Met
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000483914
  gene symbol: TSGA10
  hgvsc: ENST00000483914.1:n.171-2195A>C
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000476849
  gene symbol: TSGA10
  hgvsc: ENST00000476849.1:n.272+4150A>C
  variant of: http://identifiers.org/hgnc/14927
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1037
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25402
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7497
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 710
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2030
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22202
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 588
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Ile29Met
num of homozygotes: 0
population: Other
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: T
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD

2-99767025-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99767025
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 99767025
    reference: chr 2
allele count: 1
allele frequency: 8.268836409340477e-6
allele num: 120936
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl protein: ENSP00000377123
  ensembl transcript: ENST00000393483
  gene symbol: TSGA10
  hgvsc: ENST00000393483.3:c.-621+4131C>T
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000471174
  gene symbol: TSGA10
  hgvsc: ENST00000471174.1:n.270+4131C>T
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000489348
  gene symbol: TSGA10
  hgvsc: ENST00000489348.1:n.307-2214C>T
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000273045
  ensembl protein: ENSP00000302202
  ensembl transcript: ENST00000302513
  gene symbol: C2ORF15
  hgvsc: ENST00000302513.2:c.106G>A
  hgvsp: ENSP00000302202.2:p.Gly36Arg
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241962
  ensembl protein: ENSP00000390891
  ensembl transcript: ENST00000424491
  gene symbol: C2orf15
  hgvsc: ENST00000424491.1:c.63+43G>A
  variant of: http://identifiers.org/hgnc/28436
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000273045
  ensembl protein: ENSP00000386654
  ensembl transcript: ENST00000409684
  gene symbol: C2ORF15
  hgvsc: ENST00000409684.1:c.106G>A
  hgvsp: ENSP00000386654.1:p.Gly36Arg
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000498097
  gene symbol: TSGA10
  hgvsc: ENST00000498097.1:n.347-2214C>T
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000476849
  gene symbol: TSGA10
  hgvsc: ENST00000476849.1:n.272+4131C>T
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000483914
  gene symbol: TSGA10
  hgvsc: ENST00000483914.1:n.171-2214C>T
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000465216
  gene symbol: TSGA10
  hgvsc: ENST00000465216.1:n.199-2214C>T
  variant of: http://identifiers.org/hgnc/14927
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 22419
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7549
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1042
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2034
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25340
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 499
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Gly36Arg
num of homozygotes: 0
population: African
population: East Asian
population: Other
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
reference allele: G
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum

2-99767026-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99767026
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 99767026
    reference: chr 2
allele count: 1
allele frequency: 8.267469162340024e-6
allele num: 120956
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000471174
  gene symbol: TSGA10
  hgvsc: ENST00000471174.1:n.270+4130C>A
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000465216
  gene symbol: TSGA10
  hgvsc: ENST00000465216.1:n.199-2215C>A
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl protein: ENSP00000377123
  ensembl transcript: ENST00000393483
  gene symbol: TSGA10
  hgvsc: ENST00000393483.3:c.-621+4130C>A
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000489348
  gene symbol: TSGA10
  hgvsc: ENST00000489348.1:n.307-2215C>A
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000483914
  gene symbol: TSGA10
  hgvsc: ENST00000483914.1:n.171-2215C>A
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000476849
  gene symbol: TSGA10
  hgvsc: ENST00000476849.1:n.272+4130C>A
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241962
  ensembl protein: ENSP00000390891
  ensembl transcript: ENST00000424491
  gene symbol: C2orf15
  hgvsc: ENST00000424491.1:c.63+44G>T
  variant of: http://identifiers.org/hgnc/28436
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000498097
  gene symbol: TSGA10
  hgvsc: ENST00000498097.1:n.347-2215C>A
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000273045
  ensembl protein: ENSP00000386654
  ensembl transcript: ENST00000409684
  gene symbol: C2ORF15
  hgvsc: ENST00000409684.1:c.107G>T
  hgvsp: ENSP00000386654.1:p.Gly36Val
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000273045
  ensembl protein: ENSP00000302202
  ensembl transcript: ENST00000302513
  gene symbol: C2ORF15
  hgvsc: ENST00000302513.2:c.107G>T
  hgvsp: ENSP00000302202.2:p.Gly36Val
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 710
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7546
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1039
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22434
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2033
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25340
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Gly36Val
num of homozygotes: 0
population: Other
population: European (Finnish)
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
reference allele: G
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: QD

2-99767027-A-AT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99767027
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 99767028
    reference: chr 2
allele count: 3
allele frequency: 2.479912707072711e-5
allele num: 120972
alternate allele: AT
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000273045
  ensembl protein: ENSP00000386654
  ensembl transcript: ENST00000409684
  gene symbol: C2ORF15
  hgvsc: ENST00000409684.1:c.112dupT
  hgvsp: ENSP00000386654.1:p.Ser38PhefsTer3
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000465216
  gene symbol: TSGA10
  hgvsc: ENST00000465216.1:n.199-2217dupA
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000489348
  gene symbol: TSGA10
  hgvsc: ENST00000489348.1:n.307-2217dupA
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241962
  ensembl protein: ENSP00000390891
  ensembl transcript: ENST00000424491
  gene symbol: C2orf15
  hgvsc: ENST00000424491.1:c.63+49dupT
  variant of: http://identifiers.org/hgnc/28436
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000471174
  gene symbol: TSGA10
  hgvsc: ENST00000471174.1:n.270+4128dupA
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000483914
  gene symbol: TSGA10
  hgvsc: ENST00000483914.1:n.171-2217dupA
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000273045
  ensembl protein: ENSP00000302202
  ensembl transcript: ENST00000302513
  gene symbol: C2ORF15
  hgvsc: ENST00000302513.2:c.112dupT
  hgvsp: ENSP00000302202.2:p.Ser38PhefsTer3
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000476849
  gene symbol: TSGA10
  hgvsc: ENST00000476849.1:n.272+4128dupA
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000498097
  gene symbol: TSGA10
  hgvsc: ENST00000498097.1:n.347-2217dupA
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl protein: ENSP00000377123
  ensembl transcript: ENST00000393483
  gene symbol: TSGA10
  hgvsc: ENST00000393483.3:c.-621+4128dupA
  variant of: http://identifiers.org/hgnc/14927
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 710
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22444
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7546
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25339
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1038
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2032
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 589
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Ser38PhefsTer3
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
population: African
population: European (Finnish)
reference allele: A
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ

2-99767043-TCTG-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99767043
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 99767040
    reference: chr 2
allele count: 1
allele frequency: 8.259820927082301e-6
allele num: 121068
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000465216
  gene symbol: TSGA10
  hgvsc: ENST00000465216.1:n.199-2235_199-2233delCAG
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000273045
  ensembl protein: ENSP00000386654
  ensembl transcript: ENST00000409684
  gene symbol: C2ORF15
  hgvsc: ENST00000409684.1:c.127_129delGCT
  hgvsp: ENSP00000386654.1:p.Ala43del
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000471174
  gene symbol: TSGA10
  hgvsc: ENST00000471174.1:n.270+4110_270+4112delCAG
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl protein: ENSP00000377123
  ensembl transcript: ENST00000393483
  gene symbol: TSGA10
  hgvsc: ENST00000393483.3:c.-621+4110_-621+4112delCAG
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241962
  ensembl protein: ENSP00000390891
  ensembl transcript: ENST00000424491
  gene symbol: C2orf15
  hgvsc: ENST00000424491.1:c.63+64_63+66delGCT
  variant of: http://identifiers.org/hgnc/28436
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000476849
  gene symbol: TSGA10
  hgvsc: ENST00000476849.1:n.272+4110_272+4112delCAG
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000498097
  gene symbol: TSGA10
  hgvsc: ENST00000498097.1:n.347-2235_347-2233delCAG
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000489348
  gene symbol: TSGA10
  hgvsc: ENST00000489348.1:n.307-2235_307-2233delCAG
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000273045
  ensembl protein: ENSP00000302202
  ensembl transcript: ENST00000302513
  gene symbol: C2ORF15
  hgvsc: ENST00000302513.2:c.127_129delGCT
  hgvsp: ENSP00000302202.2:p.Ala43del
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000483914
  gene symbol: TSGA10
  hgvsc: ENST00000483914.1:n.171-2235_171-2233delCAG
  variant of: http://identifiers.org/hgnc/14927
canonical: true
consequence: inframe deletion
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25298
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22556
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2036
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7549
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 710
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1037
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 194
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Ala43del
num of homozygotes: 0
population: Other
population: European (Finnish)
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
reference allele: TCTG
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: QD

2-99767048-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99767048
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 99767048
    reference: chr 2
allele count: 1
allele frequency: 8.258456659619451e-6
allele num: 121088
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000471174
  gene symbol: TSGA10
  hgvsc: ENST00000471174.1:n.270+4108A>G
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000273045
  ensembl protein: ENSP00000302202
  ensembl transcript: ENST00000302513
  gene symbol: C2ORF15
  hgvsc: ENST00000302513.2:c.129T>C
  hgvsp: ENST00000302513.2:c.129T>C(p.%3D)
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000489348
  gene symbol: TSGA10
  hgvsc: ENST00000489348.1:n.307-2237A>G
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000465216
  gene symbol: TSGA10
  hgvsc: ENST00000465216.1:n.199-2237A>G
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000476849
  gene symbol: TSGA10
  hgvsc: ENST00000476849.1:n.272+4108A>G
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241962
  ensembl protein: ENSP00000390891
  ensembl transcript: ENST00000424491
  gene symbol: C2orf15
  hgvsc: ENST00000424491.1:c.63+66T>C
  variant of: http://identifiers.org/hgnc/28436
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000273045
  ensembl protein: ENSP00000386654
  ensembl transcript: ENST00000409684
  gene symbol: C2ORF15
  hgvsc: ENST00000409684.1:c.129T>C
  hgvsp: ENST00000409684.1:c.129T>C(p.%3D)
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl protein: ENSP00000377123
  ensembl transcript: ENST00000393483
  gene symbol: TSGA10
  hgvsc: ENST00000393483.3:c.-621+4108A>G
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000498097
  gene symbol: TSGA10
  hgvsc: ENST00000498097.1:n.347-2237A>G
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000483914
  gene symbol: TSGA10
  hgvsc: ENST00000483914.1:n.171-2237A>G
  variant of: http://identifiers.org/hgnc/14927
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1037
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25252
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7555
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2036
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22606
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 710
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 497
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7936
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Ala43Ala
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: Other
population: South Asian
population: East Asian
population: European (Finnish)
reference allele: T
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum

http://identifiers.org/exac.variant/2-99767049-AC-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99767049
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 99767048
    reference: chr 2
allele count: 1
allele frequency: 8.257911078813503e-6
allele num: 121096
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000476849
  gene symbol: TSGA10
  hgvsc: ENST00000476849.1:n.272+4106delG
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000483914
  gene symbol: TSGA10
  hgvsc: ENST00000483914.1:n.171-2239delG
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000489348
  gene symbol: TSGA10
  hgvsc: ENST00000489348.1:n.307-2239delG
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl protein: ENSP00000377123
  ensembl transcript: ENST00000393483
  gene symbol: TSGA10
  hgvsc: ENST00000393483.3:c.-621+4106delG
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000471174
  gene symbol: TSGA10
  hgvsc: ENST00000471174.1:n.270+4106delG
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000498097
  gene symbol: TSGA10
  hgvsc: ENST00000498097.1:n.347-2239delG
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000273045
  ensembl protein: ENSP00000302202
  ensembl transcript: ENST00000302513
  gene symbol: C2ORF15
  hgvsc: ENST00000302513.2:c.131delC
  hgvsp: ENSP00000302202.2:p.Thr44IlefsTer16
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000273045
  ensembl protein: ENSP00000386654
  ensembl transcript: ENST00000409684
  gene symbol: C2ORF15
  hgvsc: ENST00000409684.1:c.131delC
  hgvsp: ENSP00000386654.1:p.Thr44IlefsTer16
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000465216
  gene symbol: TSGA10
  hgvsc: ENST00000465216.1:n.199-2239delG
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241962
  ensembl protein: ENSP00000390891
  ensembl transcript: ENST00000424491
  gene symbol: C2orf15
  hgvsc: ENST00000424491.1:c.63+68delC
  variant of: http://identifiers.org/hgnc/28436
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25258
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22613
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7553
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2035
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1038
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 181
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44046
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Thr44IlefsTer16
num of homozygotes: 0
population: East Asian
population: African
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: AC
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum

2-99767055-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99767055
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 99767055
    reference: chr 2
allele count: 1
allele frequency: 8.255729476256522e-6
allele num: 121128
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000489348
  gene symbol: TSGA10
  hgvsc: ENST00000489348.1:n.307-2244C>T
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000498097
  gene symbol: TSGA10
  hgvsc: ENST00000498097.1:n.347-2244C>T
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000483914
  gene symbol: TSGA10
  hgvsc: ENST00000483914.1:n.171-2244C>T
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000471174
  gene symbol: TSGA10
  hgvsc: ENST00000471174.1:n.270+4101C>T
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl protein: ENSP00000377123
  ensembl transcript: ENST00000393483
  gene symbol: TSGA10
  hgvsc: ENST00000393483.3:c.-621+4101C>T
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000476849
  gene symbol: TSGA10
  hgvsc: ENST00000476849.1:n.272+4101C>T
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000273045
  ensembl protein: ENSP00000302202
  ensembl transcript: ENST00000302513
  gene symbol: C2ORF15
  hgvsc: ENST00000302513.2:c.136G>A
  hgvsp: ENSP00000302202.2:p.Val46Ile
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241962
  ensembl protein: ENSP00000390891
  ensembl transcript: ENST00000424491
  gene symbol: C2orf15
  hgvsc: ENST00000424491.1:c.63+73G>A
  variant of: http://identifiers.org/hgnc/28436
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000465216
  gene symbol: TSGA10
  hgvsc: ENST00000465216.1:n.199-2244C>T
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000273045
  ensembl protein: ENSP00000386654
  ensembl transcript: ENST00000409684
  gene symbol: C2ORF15
  hgvsc: ENST00000409684.1:c.136G>A
  hgvsp: ENSP00000386654.1:p.Val46Ile
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7563
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22655
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2037
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1039
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25239
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 710
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 588
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Val46Ile
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
population: South Asian
population: Other
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum

2-99767058-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99767058
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 99767058
    reference: chr 2
allele count: 1
allele frequency: 8.254094030639197e-6
allele num: 121152
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000476849
  gene symbol: TSGA10
  hgvsc: ENST00000476849.1:n.272+4098A>G
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000498097
  gene symbol: TSGA10
  hgvsc: ENST00000498097.1:n.347-2247A>G
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000273045
  ensembl protein: ENSP00000302202
  ensembl transcript: ENST00000302513
  gene symbol: C2ORF15
  hgvsc: ENST00000302513.2:c.139T>C
  hgvsp: ENSP00000302202.2:p.Ser47Pro
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl protein: ENSP00000377123
  ensembl transcript: ENST00000393483
  gene symbol: TSGA10
  hgvsc: ENST00000393483.3:c.-621+4098A>G
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000471174
  gene symbol: TSGA10
  hgvsc: ENST00000471174.1:n.270+4098A>G
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241962
  ensembl protein: ENSP00000390891
  ensembl transcript: ENST00000424491
  gene symbol: C2orf15
  hgvsc: ENST00000424491.1:c.63+76T>C
  variant of: http://identifiers.org/hgnc/28436
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000489348
  gene symbol: TSGA10
  hgvsc: ENST00000489348.1:n.307-2247A>G
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000273045
  ensembl protein: ENSP00000386654
  ensembl transcript: ENST00000409684
  gene symbol: C2ORF15
  hgvsc: ENST00000409684.1:c.139T>C
  hgvsp: ENSP00000386654.1:p.Ser47Pro
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000465216
  gene symbol: TSGA10
  hgvsc: ENST00000465216.1:n.199-2247A>G
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000483914
  gene symbol: TSGA10
  hgvsc: ENST00000483914.1:n.171-2247A>G
  variant of: http://identifiers.org/hgnc/14927
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7564
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25254
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1038
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22660
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2036
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ser47Pro
num of homozygotes: 0
population: African
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Latino
population: East Asian
reference allele: T
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: DP

2-99767060-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99767060
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 99767060
    reference: chr 2
allele count: 1
allele frequency: 8.253412786187088e-6
allele num: 121162
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000465216
  gene symbol: TSGA10
  hgvsc: ENST00000465216.1:n.199-2249A>G
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000273045
  ensembl protein: ENSP00000302202
  ensembl transcript: ENST00000302513
  gene symbol: C2ORF15
  hgvsc: ENST00000302513.2:c.141T>C
  hgvsp: ENST00000302513.2:c.141T>C(p.%3D)
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl protein: ENSP00000377123
  ensembl transcript: ENST00000393483
  gene symbol: TSGA10
  hgvsc: ENST00000393483.3:c.-621+4096A>G
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000483914
  gene symbol: TSGA10
  hgvsc: ENST00000483914.1:n.171-2249A>G
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000489348
  gene symbol: TSGA10
  hgvsc: ENST00000489348.1:n.307-2249A>G
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000498097
  gene symbol: TSGA10
  hgvsc: ENST00000498097.1:n.347-2249A>G
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000273045
  ensembl protein: ENSP00000386654
  ensembl transcript: ENST00000409684
  gene symbol: C2ORF15
  hgvsc: ENST00000409684.1:c.141T>C
  hgvsp: ENST00000409684.1:c.141T>C(p.%3D)
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000471174
  gene symbol: TSGA10
  hgvsc: ENST00000471174.1:n.270+4096A>G
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241962
  ensembl protein: ENSP00000390891
  ensembl transcript: ENST00000424491
  gene symbol: C2orf15
  hgvsc: ENST00000424491.1:c.63+78T>C
  variant of: http://identifiers.org/hgnc/28436
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000476849
  gene symbol: TSGA10
  hgvsc: ENST00000476849.1:n.272+4096A>G
  variant of: http://identifiers.org/hgnc/14927
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2036
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22669
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25256
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1038
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7565
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 145
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2210
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Ser47Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
population: Other
population: African
population: European (Finnish)
reference allele: T
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum

2-99767068-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99767068
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 99767068
    reference: chr 2
allele count: 1
allele frequency: 8.252323028932645e-6
allele num: 121178
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000273045
  ensembl protein: ENSP00000386654
  ensembl transcript: ENST00000409684
  gene symbol: C2ORF15
  hgvsc: ENST00000409684.1:c.149A>G
  hgvsp: ENSP00000386654.1:p.His50Arg
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000483914
  gene symbol: TSGA10
  hgvsc: ENST00000483914.1:n.171-2257T>C
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000498097
  gene symbol: TSGA10
  hgvsc: ENST00000498097.1:n.347-2257T>C
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl protein: ENSP00000377123
  ensembl transcript: ENST00000393483
  gene symbol: TSGA10
  hgvsc: ENST00000393483.3:c.-621+4088T>C
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000465216
  gene symbol: TSGA10
  hgvsc: ENST00000465216.1:n.199-2257T>C
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000273045
  ensembl protein: ENSP00000302202
  ensembl transcript: ENST00000302513
  gene symbol: C2ORF15
  hgvsc: ENST00000302513.2:c.149A>G
  hgvsp: ENSP00000302202.2:p.His50Arg
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241962
  ensembl protein: ENSP00000390891
  ensembl transcript: ENST00000424491
  gene symbol: C2orf15
  hgvsc: ENST00000424491.1:c.63+86A>G
  variant of: http://identifiers.org/hgnc/28436
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000471174
  gene symbol: TSGA10
  hgvsc: ENST00000471174.1:n.270+4088T>C
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000476849
  gene symbol: TSGA10
  hgvsc: ENST00000476849.1:n.272+4088T>C
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000489348
  gene symbol: TSGA10
  hgvsc: ENST00000489348.1:n.307-2257T>C
  variant of: http://identifiers.org/hgnc/14927
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7573
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2036
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1038
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25233
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 713
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22699
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 498
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1162
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44160
  bin: 6.25e1
  variant carriers: 0
hgvs: p.His50Arg
num of homozygotes: 0
population: South Asian
population: African
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: East Asian
reference allele: A
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum

2-99767071-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99767071
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 99767071
    reference: chr 2
allele count: 2
allele frequency: 1.650301179965344e-5
allele num: 121190
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000483914
  gene symbol: TSGA10
  hgvsc: ENST00000483914.1:n.171-2260A>G
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000273045
  ensembl protein: ENSP00000386654
  ensembl transcript: ENST00000409684
  gene symbol: C2ORF15
  hgvsc: ENST00000409684.1:c.152T>C
  hgvsp: ENSP00000386654.1:p.Met51Thr
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl protein: ENSP00000377123
  ensembl transcript: ENST00000393483
  gene symbol: TSGA10
  hgvsc: ENST00000393483.3:c.-621+4085A>G
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000273045
  ensembl protein: ENSP00000302202
  ensembl transcript: ENST00000302513
  gene symbol: C2ORF15
  hgvsc: ENST00000302513.2:c.152T>C
  hgvsp: ENSP00000302202.2:p.Met51Thr
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000498097
  gene symbol: TSGA10
  hgvsc: ENST00000498097.1:n.347-2260A>G
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241962
  ensembl protein: ENSP00000390891
  ensembl transcript: ENST00000424491
  gene symbol: C2orf15
  hgvsc: ENST00000424491.1:c.63+89T>C
  variant of: http://identifiers.org/hgnc/28436
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000476849
  gene symbol: TSGA10
  hgvsc: ENST00000476849.1:n.272+4085A>G
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000471174
  gene symbol: TSGA10
  hgvsc: ENST00000471174.1:n.270+4085A>G
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000465216
  gene symbol: TSGA10
  hgvsc: ENST00000465216.1:n.199-2260A>G
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000489348
  gene symbol: TSGA10
  hgvsc: ENST00000489348.1:n.307-2260A>G
  variant of: http://identifiers.org/hgnc/14927
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7577
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22711
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2035
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25228
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1038
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2087
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Met51Thr
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Latino
population: African
population: European (Finnish)
population: Other
reference allele: T
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: ClippingRankSum

2-99767073-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99767073
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 99767073
    reference: chr 2
allele count: 1308
allele frequency: 1.079279160340616e-2
allele num: 121192
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000471174
  gene symbol: TSGA10
  hgvsc: ENST00000471174.1:n.270+4083C>T
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000489348
  gene symbol: TSGA10
  hgvsc: ENST00000489348.1:n.307-2262C>T
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000465216
  gene symbol: TSGA10
  hgvsc: ENST00000465216.1:n.199-2262C>T
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000273045
  ensembl protein: ENSP00000302202
  ensembl transcript: ENST00000302513
  gene symbol: C2ORF15
  hgvsc: ENST00000302513.2:c.154G>A
  hgvsp: ENSP00000302202.2:p.Asp52Asn
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241962
  ensembl protein: ENSP00000390891
  ensembl transcript: ENST00000424491
  gene symbol: C2orf15
  hgvsc: ENST00000424491.1:c.63+91G>A
  variant of: http://identifiers.org/hgnc/28436
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000483914
  gene symbol: TSGA10
  hgvsc: ENST00000483914.1:n.171-2262C>T
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000476849
  gene symbol: TSGA10
  hgvsc: ENST00000476849.1:n.272+4083C>T
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000273045
  ensembl protein: ENSP00000386654
  ensembl transcript: ENST00000409684
  gene symbol: C2ORF15
  hgvsc: ENST00000409684.1:c.154G>A
  hgvsp: ENSP00000386654.1:p.Asp52Asn
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000498097
  gene symbol: TSGA10
  hgvsc: ENST00000498097.1:n.347-2262C>T
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl protein: ENSP00000377123
  ensembl transcript: ENST00000393483
  gene symbol: TSGA10
  hgvsc: ENST00000393483.3:c.-621+4083C>T
  variant of: http://identifiers.org/hgnc/14927
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 6.75e1
  variant carriers: 123
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.25e1
  variant carriers: 36
genotype depth: GenotypeDepth
  all individuals: 7395
  bin: 3.25e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 1986
  bin: 3.75e1
  variant carriers: 43
genotype depth: GenotypeDepth
  all individuals: 825
  bin: 4.75e1
  variant carriers: 140
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 7.75e1
  variant carriers: 80
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 1.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 9.75e1
  variant carriers: 140
genotype depth: GenotypeDepth
  all individuals: 22420
  bin: 2.75e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 24709
  bin: 2.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 5.75e1
  variant carriers: 132
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 6.25e1
  variant carriers: 112
genotype depth: GenotypeDepth
  all individuals: 1076
  bin: 4.25e1
  variant carriers: 88
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 5.25e1
  variant carriers: 155
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.25e1
  variant carriers: 54
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.75e1
  variant carriers: 37
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 7.25e1
  variant carriers: 98
genotype quality: GenotypeQuality
  all individuals: 1097
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7714
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Asp52Asn
num of homozygotes: 11
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Other
population: Latino
population: African
reference allele: G
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD

2-99767079-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99767079
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 99767079
    reference: chr 2
allele count: 1
allele frequency: 8.251778258214646e-6
allele num: 121186
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000476849
  gene symbol: TSGA10
  hgvsc: ENST00000476849.1:n.272+4077T>C
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl protein: ENSP00000377123
  ensembl transcript: ENST00000393483
  gene symbol: TSGA10
  hgvsc: ENST00000393483.3:c.-621+4077T>C
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000465216
  gene symbol: TSGA10
  hgvsc: ENST00000465216.1:n.199-2268T>C
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000489348
  gene symbol: TSGA10
  hgvsc: ENST00000489348.1:n.307-2268T>C
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241962
  ensembl protein: ENSP00000390891
  ensembl transcript: ENST00000424491
  gene symbol: C2orf15
  hgvsc: ENST00000424491.1:c.63+97A>G
  variant of: http://identifiers.org/hgnc/28436
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000273045
  ensembl protein: ENSP00000302202
  ensembl transcript: ENST00000302513
  gene symbol: C2ORF15
  hgvsc: ENST00000302513.2:c.160A>G
  hgvsp: ENSP00000302202.2:p.Lys54Glu
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000273045
  ensembl protein: ENSP00000386654
  ensembl transcript: ENST00000409684
  gene symbol: C2ORF15
  hgvsc: ENST00000409684.1:c.160A>G
  hgvsp: ENSP00000386654.1:p.Lys54Glu
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000471174
  gene symbol: TSGA10
  hgvsc: ENST00000471174.1:n.270+4077T>C
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000483914
  gene symbol: TSGA10
  hgvsc: ENST00000483914.1:n.171-2268T>C
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000498097
  gene symbol: TSGA10
  hgvsc: ENST00000498097.1:n.347-2268T>C
  variant of: http://identifiers.org/hgnc/14927
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22966
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2044
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7707
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24809
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1035
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 149
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Lys54Glu
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Latino
population: African
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: A
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum

2-99767098-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99767098
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 99767098
    reference: chr 2
allele count: 1
allele frequency: 8.251914444151043e-6
allele num: 121184
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241962
  ensembl protein: ENSP00000390891
  ensembl transcript: ENST00000424491
  gene symbol: C2orf15
  hgvsc: ENST00000424491.1:c.63+116T>C
  variant of: http://identifiers.org/hgnc/28436
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000476849
  gene symbol: TSGA10
  hgvsc: ENST00000476849.1:n.272+4058A>G
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000498097
  gene symbol: TSGA10
  hgvsc: ENST00000498097.1:n.347-2287A>G
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000273045
  ensembl protein: ENSP00000302202
  ensembl transcript: ENST00000302513
  gene symbol: C2ORF15
  hgvsc: ENST00000302513.2:c.179T>C
  hgvsp: ENSP00000302202.2:p.Ile60Thr
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl protein: ENSP00000377123
  ensembl transcript: ENST00000393483
  gene symbol: TSGA10
  hgvsc: ENST00000393483.3:c.-621+4058A>G
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000273045
  ensembl protein: ENSP00000386654
  ensembl transcript: ENST00000409684
  gene symbol: C2ORF15
  hgvsc: ENST00000409684.1:c.179T>C
  hgvsp: ENSP00000386654.1:p.Ile60Thr
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000489348
  gene symbol: TSGA10
  hgvsc: ENST00000489348.1:n.307-2287A>G
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000465216
  gene symbol: TSGA10
  hgvsc: ENST00000465216.1:n.199-2287A>G
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000483914
  gene symbol: TSGA10
  hgvsc: ENST00000483914.1:n.171-2287A>G
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000471174
  gene symbol: TSGA10
  hgvsc: ENST00000471174.1:n.270+4058A>G
  variant of: http://identifiers.org/hgnc/14927
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2046
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1034
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24684
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23007
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7724
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 712
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2192
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Ile60Thr
num of homozygotes: 0
population: African
population: Other
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: T
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff

http://identifiers.org/exac.variant/2-99767100-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99767100
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 99767100
    reference: chr 2
allele count: 1
allele frequency: 8.252459232851389e-6
allele num: 121176
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl protein: ENSP00000377123
  ensembl transcript: ENST00000393483
  gene symbol: TSGA10
  hgvsc: ENST00000393483.3:c.-621+4056G>T
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000471174
  gene symbol: TSGA10
  hgvsc: ENST00000471174.1:n.270+4056G>T
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000498097
  gene symbol: TSGA10
  hgvsc: ENST00000498097.1:n.347-2289G>T
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000273045
  ensembl protein: ENSP00000386654
  ensembl transcript: ENST00000409684
  gene symbol: C2ORF15
  hgvsc: ENST00000409684.1:c.181C>A
  hgvsp: ENST00000409684.1:c.181C>A(p.%3D)
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000483914
  gene symbol: TSGA10
  hgvsc: ENST00000483914.1:n.171-2289G>T
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000273045
  ensembl protein: ENSP00000302202
  ensembl transcript: ENST00000302513
  gene symbol: C2ORF15
  hgvsc: ENST00000302513.2:c.181C>A
  hgvsp: ENST00000302513.2:c.181C>A(p.%3D)
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000465216
  gene symbol: TSGA10
  hgvsc: ENST00000465216.1:n.199-2289G>T
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000476849
  gene symbol: TSGA10
  hgvsc: ENST00000476849.1:n.272+4056G>T
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000489348
  gene symbol: TSGA10
  hgvsc: ENST00000489348.1:n.307-2289G>T
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241962
  ensembl protein: ENSP00000390891
  ensembl transcript: ENST00000424491
  gene symbol: C2orf15
  hgvsc: ENST00000424491.1:c.63+118C>A
  variant of: http://identifiers.org/hgnc/28436
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2048
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7728
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 712
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1034
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23015
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24666
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Arg61Arg
num of homozygotes: 0
population: South Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
reference allele: C
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: QD

2-99767100-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99767100
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 99767100
    reference: chr 2
allele count: 1
allele frequency: 8.252459232851389e-6
allele num: 121176
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000476849
  gene symbol: TSGA10
  hgvsc: ENST00000476849.1:n.272+4056G>A
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000483914
  gene symbol: TSGA10
  hgvsc: ENST00000483914.1:n.171-2289G>A
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000471174
  gene symbol: TSGA10
  hgvsc: ENST00000471174.1:n.270+4056G>A
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000273045
  ensembl protein: ENSP00000302202
  ensembl transcript: ENST00000302513
  gene symbol: C2ORF15
  hgvsc: ENST00000302513.2:c.181C>T
  hgvsp: ENSP00000302202.2:p.Arg61Ter
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000465216
  gene symbol: TSGA10
  hgvsc: ENST00000465216.1:n.199-2289G>A
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl protein: ENSP00000377123
  ensembl transcript: ENST00000393483
  gene symbol: TSGA10
  hgvsc: ENST00000393483.3:c.-621+4056G>A
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000489348
  gene symbol: TSGA10
  hgvsc: ENST00000489348.1:n.307-2289G>A
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241962
  ensembl protein: ENSP00000390891
  ensembl transcript: ENST00000424491
  gene symbol: C2orf15
  hgvsc: ENST00000424491.1:c.63+118C>T
  variant of: http://identifiers.org/hgnc/28436
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000273045
  ensembl protein: ENSP00000386654
  ensembl transcript: ENST00000409684
  gene symbol: C2ORF15
  hgvsc: ENST00000409684.1:c.181C>T
  hgvsp: ENSP00000386654.1:p.Arg61Ter
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000498097
  gene symbol: TSGA10
  hgvsc: ENST00000498097.1:n.347-2289G>A
  variant of: http://identifiers.org/hgnc/14927
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24666
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23015
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 712
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1034
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7728
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2048
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 450
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Arg61Ter
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: African
population: Other
reference allele: C
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff

2-99767101-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99767101
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 99767101
    reference: chr 2
allele count: 30
allele frequency: 2.475737769855417e-4
allele num: 121176
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000273045
  ensembl protein: ENSP00000302202
  ensembl transcript: ENST00000302513
  gene symbol: C2ORF15
  hgvsc: ENST00000302513.2:c.182G>A
  hgvsp: ENSP00000302202.2:p.Arg61Gln
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000483914
  gene symbol: TSGA10
  hgvsc: ENST00000483914.1:n.171-2290C>T
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000476849
  gene symbol: TSGA10
  hgvsc: ENST00000476849.1:n.272+4055C>T
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000471174
  gene symbol: TSGA10
  hgvsc: ENST00000471174.1:n.270+4055C>T
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl protein: ENSP00000377123
  ensembl transcript: ENST00000393483
  gene symbol: TSGA10
  hgvsc: ENST00000393483.3:c.-621+4055C>T
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000273045
  ensembl protein: ENSP00000386654
  ensembl transcript: ENST00000409684
  gene symbol: C2ORF15
  hgvsc: ENST00000409684.1:c.182G>A
  hgvsp: ENSP00000386654.1:p.Arg61Gln
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000465216
  gene symbol: TSGA10
  hgvsc: ENST00000465216.1:n.199-2290C>T
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000498097
  gene symbol: TSGA10
  hgvsc: ENST00000498097.1:n.347-2290C>T
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241962
  ensembl protein: ENSP00000390891
  ensembl transcript: ENST00000424491
  gene symbol: C2orf15
  hgvsc: ENST00000424491.1:c.63+119G>A
  variant of: http://identifiers.org/hgnc/28436
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000489348
  gene symbol: TSGA10
  hgvsc: ENST00000489348.1:n.307-2290C>T
  variant of: http://identifiers.org/hgnc/14927
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1039
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 7723
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24644
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 714
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 23015
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2049
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 449
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Arg61Gln
num of homozygotes: 1
population: Latino
population: South Asian
population: African
population: East Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: VQSLOD

2-99767103-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99767103
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 99767103
    reference: chr 2
allele count: 2
allele frequency: 1.650491846570278e-5
allele num: 121176
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000273045
  ensembl protein: ENSP00000386654
  ensembl transcript: ENST00000409684
  gene symbol: C2ORF15
  hgvsc: ENST00000409684.1:c.184G>C
  hgvsp: ENSP00000386654.1:p.Gly62Arg
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000273045
  ensembl protein: ENSP00000302202
  ensembl transcript: ENST00000302513
  gene symbol: C2ORF15
  hgvsc: ENST00000302513.2:c.184G>C
  hgvsp: ENSP00000302202.2:p.Gly62Arg
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241962
  ensembl protein: ENSP00000390891
  ensembl transcript: ENST00000424491
  gene symbol: C2orf15
  hgvsc: ENST00000424491.1:c.63+121G>C
  variant of: http://identifiers.org/hgnc/28436
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000465216
  gene symbol: TSGA10
  hgvsc: ENST00000465216.1:n.199-2292C>G
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl protein: ENSP00000377123
  ensembl transcript: ENST00000393483
  gene symbol: TSGA10
  hgvsc: ENST00000393483.3:c.-621+4053C>G
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000489348
  gene symbol: TSGA10
  hgvsc: ENST00000489348.1:n.307-2292C>G
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000471174
  gene symbol: TSGA10
  hgvsc: ENST00000471174.1:n.270+4053C>G
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000476849
  gene symbol: TSGA10
  hgvsc: ENST00000476849.1:n.272+4053C>G
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000483914
  gene symbol: TSGA10
  hgvsc: ENST00000483914.1:n.171-2292C>G
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000498097
  gene symbol: TSGA10
  hgvsc: ENST00000498097.1:n.347-2292C>G
  variant of: http://identifiers.org/hgnc/14927
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 714
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23034
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1036
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24639
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7733
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2044
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 169
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1749
  bin: 9.75e1
  variant carriers: 2
hgvs: p.Gly62Arg
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: African
population: Other
population: South Asian
reference allele: G
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum

2-99767111-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99767111
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 99767111
    reference: chr 2
allele count: 1
allele frequency: 8.25300409349003e-6
allele num: 121168
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000273045
  ensembl protein: ENSP00000386654
  ensembl transcript: ENST00000409684
  gene symbol: C2ORF15
  hgvsc: ENST00000409684.1:c.192A>G
  hgvsp: ENST00000409684.1:c.192A>G(p.%3D)
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000483914
  gene symbol: TSGA10
  hgvsc: ENST00000483914.1:n.171-2300T>C
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000471174
  gene symbol: TSGA10
  hgvsc: ENST00000471174.1:n.270+4045T>C
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000489348
  gene symbol: TSGA10
  hgvsc: ENST00000489348.1:n.307-2300T>C
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl protein: ENSP00000377123
  ensembl transcript: ENST00000393483
  gene symbol: TSGA10
  hgvsc: ENST00000393483.3:c.-621+4045T>C
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241962
  ensembl protein: ENSP00000390891
  ensembl transcript: ENST00000424491
  gene symbol: C2orf15
  hgvsc: ENST00000424491.1:c.63+129A>G
  variant of: http://identifiers.org/hgnc/28436
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000476849
  gene symbol: TSGA10
  hgvsc: ENST00000476849.1:n.272+4045T>C
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000465216
  gene symbol: TSGA10
  hgvsc: ENST00000465216.1:n.199-2300T>C
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000273045
  ensembl protein: ENSP00000302202
  ensembl transcript: ENST00000302513
  gene symbol: C2ORF15
  hgvsc: ENST00000302513.2:c.192A>G
  hgvsp: ENST00000302513.2:c.192A>G(p.%3D)
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000498097
  gene symbol: TSGA10
  hgvsc: ENST00000498097.1:n.347-2300T>C
  variant of: http://identifiers.org/hgnc/14927
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1037
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24607
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2043
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7732
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23036
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1748
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 179
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Glu64Glu
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: Other
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: A
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum

2-99767116-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99767116
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 99767116
    reference: chr 2
allele count: 2
allele frequency: 1.650818806127839e-5
allele num: 121152
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241962
  ensembl protein: ENSP00000390891
  ensembl transcript: ENST00000424491
  gene symbol: C2orf15
  hgvsc: ENST00000424491.1:c.63+134G>A
  variant of: http://identifiers.org/hgnc/28436
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000471174
  gene symbol: TSGA10
  hgvsc: ENST00000471174.1:n.270+4040C>T
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000273045
  ensembl protein: ENSP00000386654
  ensembl transcript: ENST00000409684
  gene symbol: C2ORF15
  hgvsc: ENST00000409684.1:c.197G>A
  hgvsp: ENSP00000386654.1:p.Ser66Asn
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000483914
  gene symbol: TSGA10
  hgvsc: ENST00000483914.1:n.171-2305C>T
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000273045
  ensembl protein: ENSP00000302202
  ensembl transcript: ENST00000302513
  gene symbol: C2ORF15
  hgvsc: ENST00000302513.2:c.197G>A
  hgvsp: ENSP00000302202.2:p.Ser66Asn
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000476849
  gene symbol: TSGA10
  hgvsc: ENST00000476849.1:n.272+4040C>T
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000465216
  gene symbol: TSGA10
  hgvsc: ENST00000465216.1:n.199-2305C>T
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000489348
  gene symbol: TSGA10
  hgvsc: ENST00000489348.1:n.307-2305C>T
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl protein: ENSP00000377123
  ensembl transcript: ENST00000393483
  gene symbol: TSGA10
  hgvsc: ENST00000393483.3:c.-621+4040C>T
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000498097
  gene symbol: TSGA10
  hgvsc: ENST00000498097.1:n.347-2305C>T
  variant of: http://identifiers.org/hgnc/14927
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23037
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7730
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2042
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1038
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24583
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Ser66Asn
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
population: Latino
population: European (Finnish)
population: Other
reference allele: G
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum

2-99767126-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99767126
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 99767126
    reference: chr 2
allele count: 1
allele frequency: 8.256411103221652e-6
allele num: 121118
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl protein: ENSP00000377123
  ensembl transcript: ENST00000393483
  gene symbol: TSGA10
  hgvsc: ENST00000393483.3:c.-621+4030T>C
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000471174
  gene symbol: TSGA10
  hgvsc: ENST00000471174.1:n.270+4030T>C
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000273045
  ensembl protein: ENSP00000386654
  ensembl transcript: ENST00000409684
  gene symbol: C2ORF15
  hgvsc: ENST00000409684.1:c.207A>G
  hgvsp: ENST00000409684.1:c.207A>G(p.%3D)
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000498097
  gene symbol: TSGA10
  hgvsc: ENST00000498097.1:n.347-2315T>C
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000483914
  gene symbol: TSGA10
  hgvsc: ENST00000483914.1:n.171-2315T>C
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000465216
  gene symbol: TSGA10
  hgvsc: ENST00000465216.1:n.199-2315T>C
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241962
  ensembl protein: ENSP00000390891
  ensembl transcript: ENST00000424491
  gene symbol: C2orf15
  hgvsc: ENST00000424491.1:c.63+144A>G
  variant of: http://identifiers.org/hgnc/28436
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000476849
  gene symbol: TSGA10
  hgvsc: ENST00000476849.1:n.272+4030T>C
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000273045
  ensembl protein: ENSP00000302202
  ensembl transcript: ENST00000302513
  gene symbol: C2ORF15
  hgvsc: ENST00000302513.2:c.207A>G
  hgvsp: ENST00000302513.2:c.207A>G(p.%3D)
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000489348
  gene symbol: TSGA10
  hgvsc: ENST00000489348.1:n.307-2315T>C
  variant of: http://identifiers.org/hgnc/14927
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23026
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7735
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2041
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1037
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24517
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 449
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 564
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Glu69Glu
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/2-99767127-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99767127
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 99767127
    reference: chr 2
allele count: 1
allele frequency: 8.256820133430213e-6
allele num: 121112
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000476849
  gene symbol: TSGA10
  hgvsc: ENST00000476849.1:n.272+4029G>T
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000489348
  gene symbol: TSGA10
  hgvsc: ENST00000489348.1:n.307-2316G>T
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000465216
  gene symbol: TSGA10
  hgvsc: ENST00000465216.1:n.199-2316G>T
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000273045
  ensembl protein: ENSP00000386654
  ensembl transcript: ENST00000409684
  gene symbol: C2ORF15
  hgvsc: ENST00000409684.1:c.208C>A
  hgvsp: ENSP00000386654.1:p.Pro70Thr
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000273045
  ensembl protein: ENSP00000302202
  ensembl transcript: ENST00000302513
  gene symbol: C2ORF15
  hgvsc: ENST00000302513.2:c.208C>A
  hgvsp: ENSP00000302202.2:p.Pro70Thr
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000471174
  gene symbol: TSGA10
  hgvsc: ENST00000471174.1:n.270+4029G>T
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000498097
  gene symbol: TSGA10
  hgvsc: ENST00000498097.1:n.347-2316G>T
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl protein: ENSP00000377123
  ensembl transcript: ENST00000393483
  gene symbol: TSGA10
  hgvsc: ENST00000393483.3:c.-621+4029G>T
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241962
  ensembl protein: ENSP00000390891
  ensembl transcript: ENST00000424491
  gene symbol: C2orf15
  hgvsc: ENST00000424491.1:c.63+145C>A
  variant of: http://identifiers.org/hgnc/28436
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000483914
  gene symbol: TSGA10
  hgvsc: ENST00000483914.1:n.171-2316G>T
  variant of: http://identifiers.org/hgnc/14927
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7737
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2042
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23022
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1037
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24507
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2186
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Pro70Thr
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD

2-99767131-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99767131
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 99767131
    reference: chr 2
allele count: 1
allele frequency: 8.258047467256841e-6
allele num: 121094
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000489348
  gene symbol: TSGA10
  hgvsc: ENST00000489348.1:n.307-2320G>A
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000476849
  gene symbol: TSGA10
  hgvsc: ENST00000476849.1:n.272+4025G>A
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000471174
  gene symbol: TSGA10
  hgvsc: ENST00000471174.1:n.270+4025G>A
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241962
  ensembl protein: ENSP00000390891
  ensembl transcript: ENST00000424491
  gene symbol: C2orf15
  hgvsc: ENST00000424491.1:c.63+149C>T
  variant of: http://identifiers.org/hgnc/28436
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000483914
  gene symbol: TSGA10
  hgvsc: ENST00000483914.1:n.171-2320G>A
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000273045
  ensembl protein: ENSP00000302202
  ensembl transcript: ENST00000302513
  gene symbol: C2ORF15
  hgvsc: ENST00000302513.2:c.212C>T
  hgvsp: ENSP00000302202.2:p.Ala71Val
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000498097
  gene symbol: TSGA10
  hgvsc: ENST00000498097.1:n.347-2320G>A
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl protein: ENSP00000377123
  ensembl transcript: ENST00000393483
  gene symbol: TSGA10
  hgvsc: ENST00000393483.3:c.-621+4025G>A
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000465216
  gene symbol: TSGA10
  hgvsc: ENST00000465216.1:n.199-2320G>A
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000273045
  ensembl protein: ENSP00000386654
  ensembl transcript: ENST00000409684
  gene symbol: C2ORF15
  hgvsc: ENST00000409684.1:c.212C>T
  hgvsp: ENSP00000386654.1:p.Ala71Val
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24447
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23034
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1041
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 712
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7744
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2044
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44030
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Ala71Val
num of homozygotes: 0
population: Latino
population: Other
population: African
population: European (Finnish)
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD

2-99767132-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99767132
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 99767132
    reference: chr 2
allele count: 3
allele frequency: 2.477414240177052e-5
allele num: 121094
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000273045
  ensembl protein: ENSP00000302202
  ensembl transcript: ENST00000302513
  gene symbol: C2ORF15
  hgvsc: ENST00000302513.2:c.213G>A
  hgvsp: ENST00000302513.2:c.213G>A(p.%3D)
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000273045
  ensembl protein: ENSP00000386654
  ensembl transcript: ENST00000409684
  gene symbol: C2ORF15
  hgvsc: ENST00000409684.1:c.213G>A
  hgvsp: ENST00000409684.1:c.213G>A(p.%3D)
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000471174
  gene symbol: TSGA10
  hgvsc: ENST00000471174.1:n.270+4024C>T
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000476849
  gene symbol: TSGA10
  hgvsc: ENST00000476849.1:n.272+4024C>T
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000465216
  gene symbol: TSGA10
  hgvsc: ENST00000465216.1:n.199-2321C>T
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241962
  ensembl protein: ENSP00000390891
  ensembl transcript: ENST00000424491
  gene symbol: C2orf15
  hgvsc: ENST00000424491.1:c.63+150G>A
  variant of: http://identifiers.org/hgnc/28436
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000498097
  gene symbol: TSGA10
  hgvsc: ENST00000498097.1:n.347-2321C>T
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000483914
  gene symbol: TSGA10
  hgvsc: ENST00000483914.1:n.171-2321C>T
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl protein: ENSP00000377123
  ensembl transcript: ENST00000393483
  gene symbol: TSGA10
  hgvsc: ENST00000393483.3:c.-621+4024C>T
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000489348
  gene symbol: TSGA10
  hgvsc: ENST00000489348.1:n.307-2321C>T
  variant of: http://identifiers.org/hgnc/14927
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2044
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7745
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1042
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24435
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 709
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23041
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 232
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Ala71Ala
num of homozygotes: 0
population: Other
population: European (Finnish)
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Latino
reference allele: G
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS

2-99767136-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99767136
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 99767136
    reference: chr 2
allele count: 1
allele frequency: 8.258183860205463e-6
allele num: 121092
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000483914
  gene symbol: TSGA10
  hgvsc: ENST00000483914.1:n.171-2325G>C
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000498097
  gene symbol: TSGA10
  hgvsc: ENST00000498097.1:n.347-2325G>C
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000489348
  gene symbol: TSGA10
  hgvsc: ENST00000489348.1:n.307-2325G>C
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000465216
  gene symbol: TSGA10
  hgvsc: ENST00000465216.1:n.199-2325G>C
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl protein: ENSP00000377123
  ensembl transcript: ENST00000393483
  gene symbol: TSGA10
  hgvsc: ENST00000393483.3:c.-621+4020G>C
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000273045
  ensembl protein: ENSP00000386654
  ensembl transcript: ENST00000409684
  gene symbol: C2ORF15
  hgvsc: ENST00000409684.1:c.217C>G
  hgvsp: ENSP00000386654.1:p.Gln73Glu
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000471174
  gene symbol: TSGA10
  hgvsc: ENST00000471174.1:n.270+4020G>C
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000476849
  gene symbol: TSGA10
  hgvsc: ENST00000476849.1:n.272+4020G>C
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000273045
  ensembl protein: ENSP00000302202
  ensembl transcript: ENST00000302513
  gene symbol: C2ORF15
  hgvsc: ENST00000302513.2:c.217C>G
  hgvsp: ENSP00000302202.2:p.Gln73Glu
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241962
  ensembl protein: ENSP00000390891
  ensembl transcript: ENST00000424491
  gene symbol: C2orf15
  hgvsc: ENST00000424491.1:c.63+154C>G
  variant of: http://identifiers.org/hgnc/28436
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7742
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23042
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1040
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2043
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24389
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7879
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Gln73Glu
num of homozygotes: 0
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Latino
population: African
reference allele: C
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff

2-99767136-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99767136
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 99767136
    reference: chr 2
allele count: 3
allele frequency: 2.477455158061639e-5
allele num: 121092
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000471174
  gene symbol: TSGA10
  hgvsc: ENST00000471174.1:n.270+4020G>A
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000273045
  ensembl protein: ENSP00000386654
  ensembl transcript: ENST00000409684
  gene symbol: C2ORF15
  hgvsc: ENST00000409684.1:c.217C>T
  hgvsp: ENSP00000386654.1:p.Gln73Ter
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000483914
  gene symbol: TSGA10
  hgvsc: ENST00000483914.1:n.171-2325G>A
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000476849
  gene symbol: TSGA10
  hgvsc: ENST00000476849.1:n.272+4020G>A
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000465216
  gene symbol: TSGA10
  hgvsc: ENST00000465216.1:n.199-2325G>A
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000273045
  ensembl protein: ENSP00000302202
  ensembl transcript: ENST00000302513
  gene symbol: C2ORF15
  hgvsc: ENST00000302513.2:c.217C>T
  hgvsp: ENSP00000302202.2:p.Gln73Ter
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000498097
  gene symbol: TSGA10
  hgvsc: ENST00000498097.1:n.347-2325G>A
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241962
  ensembl protein: ENSP00000390891
  ensembl transcript: ENST00000424491
  gene symbol: C2orf15
  hgvsc: ENST00000424491.1:c.63+154C>T
  variant of: http://identifiers.org/hgnc/28436
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000489348
  gene symbol: TSGA10
  hgvsc: ENST00000489348.1:n.307-2325G>A
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl protein: ENSP00000377123
  ensembl transcript: ENST00000393483
  gene symbol: TSGA10
  hgvsc: ENST00000393483.3:c.-621+4020G>A
  variant of: http://identifiers.org/hgnc/14927
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 24389
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7742
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2043
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1040
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23042
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 248
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Gln73Ter
num of homozygotes: 0
population: African
population: Other
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: DP

2-99767138-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99767138
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 99767138
    reference: chr 2
allele count: 1
allele frequency: 8.258729477057249e-6
allele num: 121084
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000273045
  ensembl protein: ENSP00000386654
  ensembl transcript: ENST00000409684
  gene symbol: C2ORF15
  hgvsc: ENST00000409684.1:c.219G>A
  hgvsp: ENST00000409684.1:c.219G>A(p.%3D)
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000483914
  gene symbol: TSGA10
  hgvsc: ENST00000483914.1:n.171-2327C>T
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000476849
  gene symbol: TSGA10
  hgvsc: ENST00000476849.1:n.272+4018C>T
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl protein: ENSP00000377123
  ensembl transcript: ENST00000393483
  gene symbol: TSGA10
  hgvsc: ENST00000393483.3:c.-621+4018C>T
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000498097
  gene symbol: TSGA10
  hgvsc: ENST00000498097.1:n.347-2327C>T
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000471174
  gene symbol: TSGA10
  hgvsc: ENST00000471174.1:n.270+4018C>T
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000465216
  gene symbol: TSGA10
  hgvsc: ENST00000465216.1:n.199-2327C>T
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241962
  ensembl protein: ENSP00000390891
  ensembl transcript: ENST00000424491
  gene symbol: C2orf15
  hgvsc: ENST00000424491.1:c.63+156G>A
  variant of: http://identifiers.org/hgnc/28436
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000273045
  ensembl protein: ENSP00000302202
  ensembl transcript: ENST00000302513
  gene symbol: C2ORF15
  hgvsc: ENST00000302513.2:c.219G>A
  hgvsp: ENST00000302513.2:c.219G>A(p.%3D)
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000489348
  gene symbol: TSGA10
  hgvsc: ENST00000489348.1:n.307-2327C>T
  variant of: http://identifiers.org/hgnc/14927
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24397
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 709
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2039
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23044
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1041
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7745
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 249
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 562
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Gln73Gln
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP

2-99767142-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99767142
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 99767142
    reference: chr 2
allele count: 1
allele frequency: 8.259275166011431e-6
allele num: 121076
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000471174
  gene symbol: TSGA10
  hgvsc: ENST00000471174.1:n.270+4014A>G
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000273045
  ensembl protein: ENSP00000302202
  ensembl transcript: ENST00000302513
  gene symbol: C2ORF15
  hgvsc: ENST00000302513.2:c.223T>C
  hgvsp: ENSP00000302202.2:p.Phe75Leu
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000489348
  gene symbol: TSGA10
  hgvsc: ENST00000489348.1:n.307-2331A>G
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000273045
  ensembl protein: ENSP00000386654
  ensembl transcript: ENST00000409684
  gene symbol: C2ORF15
  hgvsc: ENST00000409684.1:c.223T>C
  hgvsp: ENSP00000386654.1:p.Phe75Leu
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000476849
  gene symbol: TSGA10
  hgvsc: ENST00000476849.1:n.272+4014A>G
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241962
  ensembl protein: ENSP00000390891
  ensembl transcript: ENST00000424491
  gene symbol: C2orf15
  hgvsc: ENST00000424491.1:c.63+160T>C
  variant of: http://identifiers.org/hgnc/28436
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000465216
  gene symbol: TSGA10
  hgvsc: ENST00000465216.1:n.199-2331A>G
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000483914
  gene symbol: TSGA10
  hgvsc: ENST00000483914.1:n.171-2331A>G
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000498097
  gene symbol: TSGA10
  hgvsc: ENST00000498097.1:n.347-2331A>G
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl protein: ENSP00000377123
  ensembl transcript: ENST00000393483
  gene symbol: TSGA10
  hgvsc: ENST00000393483.3:c.-621+4014A>G
  variant of: http://identifiers.org/hgnc/14927
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7742
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2043
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1038
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23037
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24376
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 709
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43968
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 261
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Phe75Leu
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Other
reference allele: T
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: QD

2-99767150-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99767150
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 99767150
    reference: chr 2
allele count: 2
allele frequency: 1.652264428399121e-5
allele num: 121046
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000465216
  gene symbol: TSGA10
  hgvsc: ENST00000465216.1:n.199-2339G>A
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000483914
  gene symbol: TSGA10
  hgvsc: ENST00000483914.1:n.171-2339G>A
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000489348
  gene symbol: TSGA10
  hgvsc: ENST00000489348.1:n.307-2339G>A
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000476849
  gene symbol: TSGA10
  hgvsc: ENST00000476849.1:n.272+4006G>A
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000498097
  gene symbol: TSGA10
  hgvsc: ENST00000498097.1:n.347-2339G>A
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000273045
  ensembl protein: ENSP00000302202
  ensembl transcript: ENST00000302513
  gene symbol: C2ORF15
  hgvsc: ENST00000302513.2:c.231C>T
  hgvsp: ENST00000302513.2:c.231C>T(p.%3D)
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000471174
  gene symbol: TSGA10
  hgvsc: ENST00000471174.1:n.270+4006G>A
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl protein: ENSP00000377123
  ensembl transcript: ENST00000393483
  gene symbol: TSGA10
  hgvsc: ENST00000393483.3:c.-621+4006G>A
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000273045
  ensembl protein: ENSP00000386654
  ensembl transcript: ENST00000409684
  gene symbol: C2ORF15
  hgvsc: ENST00000409684.1:c.231C>T
  hgvsp: ENST00000409684.1:c.231C>T(p.%3D)
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241962
  ensembl protein: ENSP00000390891
  ensembl transcript: ENST00000424491
  gene symbol: C2orf15
  hgvsc: ENST00000424491.1:c.63+168C>T
  variant of: http://identifiers.org/hgnc/28436
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24293
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7748
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23065
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 709
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2041
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1041
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 448
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Asn77Asn
num of homozygotes: 1
population: European (Finnish)
population: East Asian
population: Other
population: European (Non-Finnish)
population: South Asian
population: Latino
population: African
reference allele: C
site quality: QD
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff

2-99767176-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99767176
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 99767176
    reference: chr 2
allele count: 1
allele frequency: 8.267879288962381e-6
allele num: 120950
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241962
  ensembl protein: ENSP00000390891
  ensembl transcript: ENST00000424491
  gene symbol: C2orf15
  hgvsc: ENST00000424491.1:c.63+194C>T
  variant of: http://identifiers.org/hgnc/28436
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000273045
  ensembl protein: ENSP00000302202
  ensembl transcript: ENST00000302513
  gene symbol: C2ORF15
  hgvsc: ENST00000302513.2:c.257C>T
  hgvsp: ENSP00000302202.2:p.Thr86Ile
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000483914
  gene symbol: TSGA10
  hgvsc: ENST00000483914.1:n.171-2365G>A
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000471174
  gene symbol: TSGA10
  hgvsc: ENST00000471174.1:n.270+3980G>A
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000465216
  gene symbol: TSGA10
  hgvsc: ENST00000465216.1:n.199-2365G>A
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000273045
  ensembl protein: ENSP00000386654
  ensembl transcript: ENST00000409684
  gene symbol: C2ORF15
  hgvsc: ENST00000409684.1:c.257C>T
  hgvsp: ENSP00000386654.1:p.Thr86Ile
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl protein: ENSP00000377123
  ensembl transcript: ENST00000393483
  gene symbol: TSGA10
  hgvsc: ENST00000393483.3:c.-621+3980G>A
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000476849
  gene symbol: TSGA10
  hgvsc: ENST00000476849.1:n.272+3980G>A
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000489348
  gene symbol: TSGA10
  hgvsc: ENST00000489348.1:n.307-2365G>A
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000498097
  gene symbol: TSGA10
  hgvsc: ENST00000498097.1:n.347-2365G>A
  variant of: http://identifiers.org/hgnc/14927
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1040
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 708
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7751
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23138
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24178
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2037
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 561
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Thr86Ile
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Other
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum

http://identifiers.org/exac.variant/2-99767177-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99767177
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 99767177
    reference: chr 2
allele count: 10
allele frequency: 8.268152729317216e-5
allele num: 120946
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000489348
  gene symbol: TSGA10
  hgvsc: ENST00000489348.1:n.307-2366T>G
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241962
  ensembl protein: ENSP00000390891
  ensembl transcript: ENST00000424491
  gene symbol: C2orf15
  hgvsc: ENST00000424491.1:c.63+195A>C
  variant of: http://identifiers.org/hgnc/28436
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000476849
  gene symbol: TSGA10
  hgvsc: ENST00000476849.1:n.272+3979T>G
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl protein: ENSP00000377123
  ensembl transcript: ENST00000393483
  gene symbol: TSGA10
  hgvsc: ENST00000393483.3:c.-621+3979T>G
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000498097
  gene symbol: TSGA10
  hgvsc: ENST00000498097.1:n.347-2366T>G
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000273045
  ensembl protein: ENSP00000302202
  ensembl transcript: ENST00000302513
  gene symbol: C2ORF15
  hgvsc: ENST00000302513.2:c.258A>C
  hgvsp: ENST00000302513.2:c.258A>C(p.%3D)
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000471174
  gene symbol: TSGA10
  hgvsc: ENST00000471174.1:n.270+3979T>G
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000465216
  gene symbol: TSGA10
  hgvsc: ENST00000465216.1:n.199-2366T>G
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000273045
  ensembl protein: ENSP00000386654
  ensembl transcript: ENST00000409684
  gene symbol: C2ORF15
  hgvsc: ENST00000409684.1:c.258A>C
  hgvsp: ENST00000409684.1:c.258A>C(p.%3D)
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000483914
  gene symbol: TSGA10
  hgvsc: ENST00000483914.1:n.171-2366T>G
  variant of: http://identifiers.org/hgnc/14927
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23133
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1037
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24173
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7746
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 708
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2036
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Thr86Thr
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: Other
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: A
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD

2-99767186-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99767186
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 99767186
    reference: chr 2
allele count: 33
allele frequency: 2.729031937943468e-4
allele num: 120922
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000489348
  gene symbol: TSGA10
  hgvsc: ENST00000489348.1:n.307-2375T>C
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000471174
  gene symbol: TSGA10
  hgvsc: ENST00000471174.1:n.270+3970T>C
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241962
  ensembl protein: ENSP00000390891
  ensembl transcript: ENST00000424491
  gene symbol: C2orf15
  hgvsc: ENST00000424491.1:c.63+204A>G
  variant of: http://identifiers.org/hgnc/28436
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000273045
  ensembl protein: ENSP00000386654
  ensembl transcript: ENST00000409684
  gene symbol: C2ORF15
  hgvsc: ENST00000409684.1:c.267A>G
  hgvsp: ENST00000409684.1:c.267A>G(p.%3D)
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000273045
  ensembl protein: ENSP00000302202
  ensembl transcript: ENST00000302513
  gene symbol: C2ORF15
  hgvsc: ENST00000302513.2:c.267A>G
  hgvsp: ENST00000302513.2:c.267A>G(p.%3D)
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000465216
  gene symbol: TSGA10
  hgvsc: ENST00000465216.1:n.199-2375T>C
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl protein: ENSP00000377123
  ensembl transcript: ENST00000393483
  gene symbol: TSGA10
  hgvsc: ENST00000393483.3:c.-621+3970T>C
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000498097
  gene symbol: TSGA10
  hgvsc: ENST00000498097.1:n.347-2375T>C
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000483914
  gene symbol: TSGA10
  hgvsc: ENST00000483914.1:n.171-2375T>C
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000476849
  gene symbol: TSGA10
  hgvsc: ENST00000476849.1:n.272+3970T>C
  variant of: http://identifiers.org/hgnc/14927
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24158
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2034
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 5.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 704
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1033
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7749
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 6.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 23148
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1138
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7871
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Glu89Glu
num of homozygotes: 0
population: European (Finnish)
population: African
population: South Asian
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum

2-99767200-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99767200
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 99767200
    reference: chr 2
allele count: 6
allele frequency: 4.963764519011218e-5
allele num: 120876
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000273045
  ensembl protein: ENSP00000302202
  ensembl transcript: ENST00000302513
  gene symbol: C2ORF15
  hgvsc: ENST00000302513.2:c.281T>C
  hgvsp: ENSP00000302202.2:p.Ile94Thr
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000476849
  gene symbol: TSGA10
  hgvsc: ENST00000476849.1:n.272+3956A>G
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000489348
  gene symbol: TSGA10
  hgvsc: ENST00000489348.1:n.307-2389A>G
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000471174
  gene symbol: TSGA10
  hgvsc: ENST00000471174.1:n.270+3956A>G
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241962
  ensembl protein: ENSP00000390891
  ensembl transcript: ENST00000424491
  gene symbol: C2orf15
  hgvsc: ENST00000424491.1:c.63+218T>C
  variant of: http://identifiers.org/hgnc/28436
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000483914
  gene symbol: TSGA10
  hgvsc: ENST00000483914.1:n.171-2389A>G
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000273045
  ensembl protein: ENSP00000386654
  ensembl transcript: ENST00000409684
  gene symbol: C2ORF15
  hgvsc: ENST00000409684.1:c.281T>C
  hgvsp: ENSP00000386654.1:p.Ile94Thr
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000465216
  gene symbol: TSGA10
  hgvsc: ENST00000465216.1:n.199-2389A>G
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl protein: ENSP00000377123
  ensembl transcript: ENST00000393483
  gene symbol: TSGA10
  hgvsc: ENST00000393483.3:c.-621+3956A>G
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000498097
  gene symbol: TSGA10
  hgvsc: ENST00000498097.1:n.347-2389A>G
  variant of: http://identifiers.org/hgnc/14927
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 704
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23167
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2036
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1034
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24141
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7758
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7867
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Ile94Thr
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Other
population: South Asian
population: African
reference allele: T
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum

2-99767249-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99767249
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 99767249
    reference: chr 2
allele count: 1
allele frequency: 8.319882856049386e-6
allele num: 120194
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000465216
  gene symbol: TSGA10
  hgvsc: ENST00000465216.1:n.199-2438C>T
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000489348
  gene symbol: TSGA10
  hgvsc: ENST00000489348.1:n.307-2438C>T
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000498097
  gene symbol: TSGA10
  hgvsc: ENST00000498097.1:n.347-2438C>T
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000476849
  gene symbol: TSGA10
  hgvsc: ENST00000476849.1:n.272+3907C>T
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241962
  ensembl protein: ENSP00000390891
  ensembl transcript: ENST00000424491
  gene symbol: C2orf15
  hgvsc: ENST00000424491.1:c.63+267G>A
  variant of: http://identifiers.org/hgnc/28436
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl protein: ENSP00000377123
  ensembl transcript: ENST00000393483
  gene symbol: TSGA10
  hgvsc: ENST00000393483.3:c.-621+3907C>T
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000471174
  gene symbol: TSGA10
  hgvsc: ENST00000471174.1:n.270+3907C>T
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000483914
  gene symbol: TSGA10
  hgvsc: ENST00000483914.1:n.171-2438C>T
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000273045
  ensembl protein: ENSP00000302202
  ensembl transcript: ENST00000302513
  gene symbol: C2ORF15
  hgvsc: ENST00000302513.2:c.330G>A
  hgvsp: ENST00000302513.2:c.330G>A(p.%3D)
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000273045
  ensembl protein: ENSP00000386654
  ensembl transcript: ENST00000409684
  gene symbol: C2ORF15
  hgvsc: ENST00000409684.1:c.330G>A
  hgvsp: ENST00000409684.1:c.330G>A(p.%3D)
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 23682
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1035
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23104
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2035
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7737
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 703
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 498
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1135
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 452
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Val110Val
num of homozygotes: 0
population: South Asian
population: African
population: Other
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum

2-99767262-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99767262
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 99767262
    reference: chr 2
allele count: 1
allele frequency: 8.370862701109976e-6
allele num: 119462
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000483914
  gene symbol: TSGA10
  hgvsc: ENST00000483914.1:n.171-2451C>T
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000471174
  gene symbol: TSGA10
  hgvsc: ENST00000471174.1:n.270+3894C>T
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl protein: ENSP00000377123
  ensembl transcript: ENST00000393483
  gene symbol: TSGA10
  hgvsc: ENST00000393483.3:c.-621+3894C>T
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000273045
  ensembl protein: ENSP00000302202
  ensembl transcript: ENST00000302513
  gene symbol: C2ORF15
  hgvsc: ENST00000302513.2:c.343G>A
  hgvsp: ENSP00000302202.2:p.Glu115Lys
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000498097
  gene symbol: TSGA10
  hgvsc: ENST00000498097.1:n.347-2451C>T
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000273045
  ensembl protein: ENSP00000386654
  ensembl transcript: ENST00000409684
  gene symbol: C2ORF15
  hgvsc: ENST00000409684.1:c.343G>A
  hgvsp: ENSP00000386654.1:p.Glu115Lys
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241962
  ensembl protein: ENSP00000390891
  ensembl transcript: ENST00000424491
  gene symbol: C2orf15
  hgvsc: ENST00000424491.1:c.63+280G>A
  variant of: http://identifiers.org/hgnc/28436
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000476849
  gene symbol: TSGA10
  hgvsc: ENST00000476849.1:n.272+3894C>T
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000465216
  gene symbol: TSGA10
  hgvsc: ENST00000465216.1:n.199-2451C>T
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000489348
  gene symbol: TSGA10
  hgvsc: ENST00000489348.1:n.307-2451C>T
  variant of: http://identifiers.org/hgnc/14927
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 22931
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2038
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 923
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7728
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22952
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 917
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 703
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1036
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1550
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7700
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2024
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Glu115Lys
num of homozygotes: 0
population: Other
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD

http://identifiers.org/exac.variant/2-99767264-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99767264
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 99767264
    reference: chr 2
allele count: 10
allele frequency: 8.370442294170824e-5
allele num: 119468
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241962
  ensembl protein: ENSP00000390891
  ensembl transcript: ENST00000424491
  gene symbol: C2orf15
  hgvsc: ENST00000424491.1:c.63+282A>C
  variant of: http://identifiers.org/hgnc/28436
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000273045
  ensembl protein: ENSP00000386654
  ensembl transcript: ENST00000409684
  gene symbol: C2ORF15
  hgvsc: ENST00000409684.1:c.345A>C
  hgvsp: ENSP00000386654.1:p.Glu115Asp
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl protein: ENSP00000377123
  ensembl transcript: ENST00000393483
  gene symbol: TSGA10
  hgvsc: ENST00000393483.3:c.-621+3892T>G
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000273045
  ensembl protein: ENSP00000302202
  ensembl transcript: ENST00000302513
  gene symbol: C2ORF15
  hgvsc: ENST00000302513.2:c.345A>C
  hgvsp: ENSP00000302202.2:p.Glu115Asp
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000498097
  gene symbol: TSGA10
  hgvsc: ENST00000498097.1:n.347-2453T>G
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000489348
  gene symbol: TSGA10
  hgvsc: ENST00000489348.1:n.307-2453T>G
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000471174
  gene symbol: TSGA10
  hgvsc: ENST00000471174.1:n.270+3892T>G
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000476849
  gene symbol: TSGA10
  hgvsc: ENST00000476849.1:n.272+3892T>G
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000465216
  gene symbol: TSGA10
  hgvsc: ENST00000465216.1:n.199-2453T>G
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000483914
  gene symbol: TSGA10
  hgvsc: ENST00000483914.1:n.171-2453T>G
  variant of: http://identifiers.org/hgnc/14927
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 919
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2037
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 922
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1033
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 703
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22968
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7726
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 22917
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 208
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1131
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1560
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Glu115Asp
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Latino
population: African
population: Other
population: East Asian
reference allele: A
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP

http://identifiers.org/exac.variant/2-99767269-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99767269
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 99767269
    reference: chr 2
allele count: 1
allele frequency: 8.403643819960336e-6
allele num: 118996
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000498097
  gene symbol: TSGA10
  hgvsc: ENST00000498097.1:n.347-2458T>G
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000471174
  gene symbol: TSGA10
  hgvsc: ENST00000471174.1:n.270+3887T>G
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000483914
  gene symbol: TSGA10
  hgvsc: ENST00000483914.1:n.171-2458T>G
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl protein: ENSP00000377123
  ensembl transcript: ENST00000393483
  gene symbol: TSGA10
  hgvsc: ENST00000393483.3:c.-621+3887T>G
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000476849
  gene symbol: TSGA10
  hgvsc: ENST00000476849.1:n.272+3887T>G
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000273045
  ensembl protein: ENSP00000386654
  ensembl transcript: ENST00000409684
  gene symbol: C2ORF15
  hgvsc: ENST00000409684.1:c.350A>C
  hgvsp: ENSP00000386654.1:p.Asp117Ala
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000489348
  gene symbol: TSGA10
  hgvsc: ENST00000489348.1:n.307-2458T>G
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000273045
  ensembl protein: ENSP00000302202
  ensembl transcript: ENST00000302513
  gene symbol: C2ORF15
  hgvsc: ENST00000302513.2:c.350A>C
  hgvsp: ENSP00000302202.2:p.Asp117Ala
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000465216
  gene symbol: TSGA10
  hgvsc: ENST00000465216.1:n.199-2458T>G
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241962
  ensembl protein: ENSP00000390891
  ensembl transcript: ENST00000424491
  gene symbol: C2orf15
  hgvsc: ENST00000424491.1:c.63+287A>C
  variant of: http://identifiers.org/hgnc/28436
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1032
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22751
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 703
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7713
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2035
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22571
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1210
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1145
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2025
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 230
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Asp117Ala
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
population: African
reference allele: A
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: ClippingRankSum

2-99767270-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99767270
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 99767270
    reference: chr 2
allele count: 1
allele frequency: 8.403361344537815e-6
allele num: 119000
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000471174
  gene symbol: TSGA10
  hgvsc: ENST00000471174.1:n.270+3886A>G
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000465216
  gene symbol: TSGA10
  hgvsc: ENST00000465216.1:n.199-2459A>G
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000273045
  ensembl protein: ENSP00000386654
  ensembl transcript: ENST00000409684
  gene symbol: C2ORF15
  hgvsc: ENST00000409684.1:c.351T>C
  hgvsp: ENST00000409684.1:c.351T>C(p.%3D)
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241962
  ensembl protein: ENSP00000390891
  ensembl transcript: ENST00000424491
  gene symbol: C2orf15
  hgvsc: ENST00000424491.1:c.63+288T>C
  variant of: http://identifiers.org/hgnc/28436
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000273045
  ensembl protein: ENSP00000302202
  ensembl transcript: ENST00000302513
  gene symbol: C2ORF15
  hgvsc: ENST00000302513.2:c.351T>C
  hgvsp: ENST00000302513.2:c.351T>C(p.%3D)
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000498097
  gene symbol: TSGA10
  hgvsc: ENST00000498097.1:n.347-2459A>G
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000476849
  gene symbol: TSGA10
  hgvsc: ENST00000476849.1:n.272+3886A>G
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl protein: ENSP00000377123
  ensembl transcript: ENST00000393483
  gene symbol: TSGA10
  hgvsc: ENST00000393483.3:c.-621+3886A>G
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000489348
  gene symbol: TSGA10
  hgvsc: ENST00000489348.1:n.307-2459A>G
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000483914
  gene symbol: TSGA10
  hgvsc: ENST00000483914.1:n.171-2459A>G
  variant of: http://identifiers.org/hgnc/14927
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1033
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22766
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22561
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2032
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1212
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7705
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 703
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1149
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 445
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Asp117Asp
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
population: Other
population: African
reference allele: T
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD

2-99767280-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99767280
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 99767280
    reference: chr 2
allele count: 10
allele frequency: 8.470269354565475e-5
allele num: 118060
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000273045
  ensembl protein: ENSP00000302202
  ensembl transcript: ENST00000302513
  gene symbol: C2ORF15
  hgvsc: ENST00000302513.2:c.361A>T
  hgvsp: ENSP00000302202.2:p.Met121Leu
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl protein: ENSP00000377123
  ensembl transcript: ENST00000393483
  gene symbol: TSGA10
  hgvsc: ENST00000393483.3:c.-621+3876T>A
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000273045
  ensembl protein: ENSP00000386654
  ensembl transcript: ENST00000409684
  gene symbol: C2ORF15
  hgvsc: ENST00000409684.1:c.361A>T
  hgvsp: ENSP00000386654.1:p.Met121Leu
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000476849
  gene symbol: TSGA10
  hgvsc: ENST00000476849.1:n.272+3876T>A
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000483914
  gene symbol: TSGA10
  hgvsc: ENST00000483914.1:n.171-2469T>A
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000471174
  gene symbol: TSGA10
  hgvsc: ENST00000471174.1:n.270+3876T>A
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000498097
  gene symbol: TSGA10
  hgvsc: ENST00000498097.1:n.347-2469T>A
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000465216
  gene symbol: TSGA10
  hgvsc: ENST00000465216.1:n.199-2469T>A
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241962
  ensembl protein: ENSP00000390891
  ensembl transcript: ENST00000424491
  gene symbol: C2orf15
  hgvsc: ENST00000424491.1:c.63+298A>T
  variant of: http://identifiers.org/hgnc/28436
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000489348
  gene symbol: TSGA10
  hgvsc: ENST00000489348.1:n.307-2469T>A
  variant of: http://identifiers.org/hgnc/14927
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22499
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 454
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 705
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1567
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1797
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21731
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2028
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7672
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1032
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 2900
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 167
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Met121Leu
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
population: Other
population: European (Finnish)
reference allele: A
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: DP

2-99767287-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99767287
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 99767287
    reference: chr 2
allele count: 1
allele frequency: 8.537813978109045e-6
allele num: 117126
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000483914
  gene symbol: TSGA10
  hgvsc: ENST00000483914.1:n.171-2476T>A
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000471174
  gene symbol: TSGA10
  hgvsc: ENST00000471174.1:n.270+3869T>A
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000273045
  ensembl protein: ENSP00000386654
  ensembl transcript: ENST00000409684
  gene symbol: C2ORF15
  hgvsc: ENST00000409684.1:c.368A>T
  hgvsp: ENSP00000386654.1:p.Asp123Val
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241962
  ensembl protein: ENSP00000390891
  ensembl transcript: ENST00000424491
  gene symbol: C2orf15
  hgvsc: ENST00000424491.1:c.63+305A>T
  variant of: http://identifiers.org/hgnc/28436
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000273045
  ensembl protein: ENSP00000302202
  ensembl transcript: ENST00000302513
  gene symbol: C2ORF15
  hgvsc: ENST00000302513.2:c.368A>T
  hgvsp: ENSP00000302202.2:p.Asp123Val
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000465216
  gene symbol: TSGA10
  hgvsc: ENST00000465216.1:n.199-2476T>A
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000498097
  gene symbol: TSGA10
  hgvsc: ENST00000498097.1:n.347-2476T>A
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000476849
  gene symbol: TSGA10
  hgvsc: ENST00000476849.1:n.272+3869T>A
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000489348
  gene symbol: TSGA10
  hgvsc: ENST00000489348.1:n.307-2476T>A
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl protein: ENSP00000377123
  ensembl transcript: ENST00000393483
  gene symbol: TSGA10
  hgvsc: ENST00000393483.3:c.-621+3869T>A
  variant of: http://identifiers.org/hgnc/14927
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2025
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1976
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22213
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 557
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2325
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7644
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1033
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20971
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 704
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 390
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2003
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Asp123Val
num of homozygotes: 0
population: Latino
population: African
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: A
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff

2-99767295-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99767295
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 99767295
    reference: chr 2
allele count: 1
allele frequency: 8.625150940141453e-6
allele num: 115940
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000476849
  gene symbol: TSGA10
  hgvsc: ENST00000476849.1:n.272+3861A>G
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000465216
  gene symbol: TSGA10
  hgvsc: ENST00000465216.1:n.199-2484A>G
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl protein: ENSP00000377123
  ensembl transcript: ENST00000393483
  gene symbol: TSGA10
  hgvsc: ENST00000393483.3:c.-621+3861A>G
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000483914
  gene symbol: TSGA10
  hgvsc: ENST00000483914.1:n.171-2484A>G
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241962
  ensembl protein: ENSP00000390891
  ensembl transcript: ENST00000424491
  gene symbol: C2orf15
  hgvsc: ENST00000424491.1:c.63+313T>C
  variant of: http://identifiers.org/hgnc/28436
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000471174
  gene symbol: TSGA10
  hgvsc: ENST00000471174.1:n.270+3861A>G
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: true
  consequence: stop_lost
  ensembl gene: ENSG00000273045
  ensembl protein: ENSP00000302202
  ensembl transcript: ENST00000302513
  gene symbol: C2ORF15
  hgvsc: ENST00000302513.2:c.376T>C
  hgvsp: ENSP00000302202.2:p.Ter126ArgextTer16
annotation: Annotation
  canonical: false
  consequence: stop_lost
  ensembl gene: ENSG00000273045
  ensembl protein: ENSP00000386654
  ensembl transcript: ENST00000409684
  gene symbol: C2ORF15
  hgvsc: ENST00000409684.1:c.376T>C
  hgvsp: ENSP00000386654.1:p.Ter126ArgextTer16
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000489348
  gene symbol: TSGA10
  hgvsc: ENST00000489348.1:n.307-2484A>G
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000498097
  gene symbol: TSGA10
  hgvsc: ENST00000498097.1:n.347-2484A>G
  variant of: http://identifiers.org/hgnc/14927
canonical: true
consequence: stop lost
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 20223
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2019
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2927
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7561
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2420
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 705
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21768
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1031
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 676
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2091
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 501
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Ter126ArgextTer16
num of homozygotes: 0
population: East Asian
population: South Asian
population: Other
population: European (Non-Finnish)
population: African
population: Latino
population: European (Finnish)
reference allele: T
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: MQRankSum

2-99767297-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99767297
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 99767297
    reference: chr 2
allele count: 5
allele frequency: 4.313617226861757e-5
allele num: 115912
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000471174
  gene symbol: TSGA10
  hgvsc: ENST00000471174.1:n.270+3859T>C
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000483914
  gene symbol: TSGA10
  hgvsc: ENST00000483914.1:n.171-2486T>C
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl protein: ENSP00000377123
  ensembl transcript: ENST00000393483
  gene symbol: TSGA10
  hgvsc: ENST00000393483.3:c.-621+3859T>C
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000476849
  gene symbol: TSGA10
  hgvsc: ENST00000476849.1:n.272+3859T>C
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: true
  consequence: stop_lost
  ensembl gene: ENSG00000273045
  ensembl protein: ENSP00000302202
  ensembl transcript: ENST00000302513
  gene symbol: C2ORF15
  hgvsc: ENST00000302513.2:c.378A>G
  hgvsp: ENSP00000302202.2:p.Ter126TrpextTer16
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000489348
  gene symbol: TSGA10
  hgvsc: ENST00000489348.1:n.307-2486T>C
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: stop_lost
  ensembl gene: ENSG00000273045
  ensembl protein: ENSP00000386654
  ensembl transcript: ENST00000409684
  gene symbol: C2ORF15
  hgvsc: ENST00000409684.1:c.378A>G
  hgvsp: ENSP00000386654.1:p.Ter126TrpextTer16
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000465216
  gene symbol: TSGA10
  hgvsc: ENST00000465216.1:n.199-2486T>C
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241962
  ensembl protein: ENSP00000390891
  ensembl transcript: ENST00000424491
  gene symbol: C2orf15
  hgvsc: ENST00000424491.1:c.63+315A>G
  variant of: http://identifiers.org/hgnc/28436
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000498097
  gene symbol: TSGA10
  hgvsc: ENST00000498097.1:n.347-2486T>C
  variant of: http://identifiers.org/hgnc/14927
canonical: true
consequence: stop lost
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 651
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 705
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7561
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21765
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2929
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2019
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2446
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20222
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1028
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 519
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1122
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1989
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Ter126TrpextTer16
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: African
population: South Asian
population: European (Finnish)
reference allele: A
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ

2-99767302-AT-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99767302
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 99767301
    reference: chr 2
allele count: 1
allele frequency: 8.715052638917939e-6
allele num: 114744
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241962
  ensembl protein: ENSP00000390891
  ensembl transcript: ENST00000424491
  gene symbol: C2orf15
  hgvsc: ENST00000424491.1:c.63+323delT
  variant of: http://identifiers.org/hgnc/28436
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl protein: ENSP00000377123
  ensembl transcript: ENST00000393483
  gene symbol: TSGA10
  hgvsc: ENST00000393483.3:c.-621+3853delA
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000471174
  gene symbol: TSGA10
  hgvsc: ENST00000471174.1:n.270+3853delA
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000498097
  gene symbol: TSGA10
  hgvsc: ENST00000498097.1:n.347-2492delA
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000489348
  gene symbol: TSGA10
  hgvsc: ENST00000489348.1:n.307-2492delA
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000273045
  ensembl protein: ENSP00000302202
  ensembl transcript: ENST00000302513
  gene symbol: C2ORF15
  hgvsc: ENST00000302513.2:c.*8delT
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000273045
  ensembl protein: ENSP00000386654
  ensembl transcript: ENST00000409684
  gene symbol: C2ORF15
  hgvsc: ENST00000409684.1:c.*8delT
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000483914
  gene symbol: TSGA10
  hgvsc: ENST00000483914.1:n.171-2492delA
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000465216
  gene symbol: TSGA10
  hgvsc: ENST00000465216.1:n.199-2492delA
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000476849
  gene symbol: TSGA10
  hgvsc: ENST00000476849.1:n.272+3853delA
  variant of: http://identifiers.org/hgnc/14927
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3613
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2796
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19448
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 776
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2018
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7462
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1023
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21302
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 706
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1710
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5037
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 341
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 691
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
reference allele: AT
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD

2-99767304-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99767304
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 99767304
    reference: chr 2
allele count: 1134
allele frequency: 9.884420270906333e-3
allele num: 114726
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000483914
  gene symbol: TSGA10
  hgvsc: ENST00000483914.1:n.171-2493A>G
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000471174
  gene symbol: TSGA10
  hgvsc: ENST00000471174.1:n.270+3852A>G
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000465216
  gene symbol: TSGA10
  hgvsc: ENST00000465216.1:n.199-2493A>G
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl protein: ENSP00000377123
  ensembl transcript: ENST00000393483
  gene symbol: TSGA10
  hgvsc: ENST00000393483.3:c.-621+3852A>G
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000273045
  ensembl protein: ENSP00000386654
  ensembl transcript: ENST00000409684
  gene symbol: C2ORF15
  hgvsc: ENST00000409684.1:c.*7T>C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000476849
  gene symbol: TSGA10
  hgvsc: ENST00000476849.1:n.272+3852A>G
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000273045
  ensembl protein: ENSP00000302202
  ensembl transcript: ENST00000302513
  gene symbol: C2ORF15
  hgvsc: ENST00000302513.2:c.*7T>C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241962
  ensembl protein: ENSP00000390891
  ensembl transcript: ENST00000424491
  gene symbol: C2orf15
  hgvsc: ENST00000424491.1:c.63+322T>C
  variant of: http://identifiers.org/hgnc/28436
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000498097
  gene symbol: TSGA10
  hgvsc: ENST00000498097.1:n.347-2493A>G
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000489348
  gene symbol: TSGA10
  hgvsc: ENST00000489348.1:n.307-2493A>G
  variant of: http://identifiers.org/hgnc/14927
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3613
  bin: 1.25e1
  variant carriers: 75
genotype depth: GenotypeDepth
  all individuals: 1050
  bin: 4.25e1
  variant carriers: 70
genotype depth: GenotypeDepth
  all individuals: 768
  bin: 1.75e1
  variant carriers: 81
genotype depth: GenotypeDepth
  all individuals: 2820
  bin: 7.5e0
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 794
  bin: 4.75e1
  variant carriers: 112
genotype depth: GenotypeDepth
  all individuals: 7349
  bin: 3.25e1
  variant carriers: 66
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 9.75e1
  variant carriers: 87
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.25e1
  variant carriers: 38
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 21100
  bin: 2.75e1
  variant carriers: 67
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 19189
  bin: 2.25e1
  variant carriers: 56
genotype depth: GenotypeDepth
  all individuals: 521
  bin: 5.25e1
  variant carriers: 107
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 5.75e1
  variant carriers: 97
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 6.25e1
  variant carriers: 60
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.75e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 6.75e1
  variant carriers: 57
genotype depth: GenotypeDepth
  all individuals: 2031
  bin: 3.75e1
  variant carriers: 98
genotype quality: GenotypeQuality
  all individuals: 5049
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 148
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2006
  bin: 7.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 4.25e1
  variant carriers: 3
num of homozygotes: 16
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: African
population: Latino
population: Other
reference allele: T
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum

2-99767305-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99767305
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 99767305
    reference: chr 2
allele count: 167
allele frequency: 1.457802297566256e-3
allele num: 114556
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000489348
  gene symbol: TSGA10
  hgvsc: ENST00000489348.1:n.307-2494A>G
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000465216
  gene symbol: TSGA10
  hgvsc: ENST00000465216.1:n.199-2494A>G
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000471174
  gene symbol: TSGA10
  hgvsc: ENST00000471174.1:n.270+3851A>G
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl protein: ENSP00000377123
  ensembl transcript: ENST00000393483
  gene symbol: TSGA10
  hgvsc: ENST00000393483.3:c.-621+3851A>G
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241962
  ensembl protein: ENSP00000390891
  ensembl transcript: ENST00000424491
  gene symbol: C2orf15
  hgvsc: ENST00000424491.1:c.63+323T>C
  variant of: http://identifiers.org/hgnc/28436
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000273045
  ensembl protein: ENSP00000386654
  ensembl transcript: ENST00000409684
  gene symbol: C2ORF15
  hgvsc: ENST00000409684.1:c.*8T>C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000498097
  gene symbol: TSGA10
  hgvsc: ENST00000498097.1:n.347-2494A>G
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000273045
  ensembl protein: ENSP00000302202
  ensembl transcript: ENST00000302513
  gene symbol: C2ORF15
  hgvsc: ENST00000302513.2:c.*8T>C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000483914
  gene symbol: TSGA10
  hgvsc: ENST00000483914.1:n.171-2494A>G
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000476849
  gene symbol: TSGA10
  hgvsc: ENST00000476849.1:n.272+3851A>G
  variant of: http://identifiers.org/hgnc/14927
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 6.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 3642
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 19215
  bin: 2.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 6.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 7.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 21419
  bin: 2.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 697
  bin: 1.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 1003
  bin: 4.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 708
  bin: 4.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 5.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2900
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1996
  bin: 3.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 7461
  bin: 3.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 5.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 9.75e1
  variant carriers: 15
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1865
  bin: 9.75e1
  variant carriers: 164
genotype quality: GenotypeQuality
  all individuals: 37694
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 2
population: East Asian
population: Latino
population: South Asian
population: African
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD

2-99767309-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99767309
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 99767309
    reference: chr 2
allele count: 340
allele frequency: 2.996862109085781e-3
allele num: 113452
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000273045
  ensembl protein: ENSP00000302202
  ensembl transcript: ENST00000302513
  gene symbol: C2ORF15
  hgvsc: ENST00000302513.2:c.*12C>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000498097
  gene symbol: TSGA10
  hgvsc: ENST00000498097.1:n.347-2498G>A
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000471174
  gene symbol: TSGA10
  hgvsc: ENST00000471174.1:n.270+3847G>A
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000273045
  ensembl protein: ENSP00000386654
  ensembl transcript: ENST00000409684
  gene symbol: C2ORF15
  hgvsc: ENST00000409684.1:c.*12C>T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl protein: ENSP00000377123
  ensembl transcript: ENST00000393483
  gene symbol: TSGA10
  hgvsc: ENST00000393483.3:c.-621+3847G>A
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241962
  ensembl protein: ENSP00000390891
  ensembl transcript: ENST00000424491
  gene symbol: C2orf15
  hgvsc: ENST00000424491.1:c.63+327C>T
  variant of: http://identifiers.org/hgnc/28436
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000465216
  gene symbol: TSGA10
  hgvsc: ENST00000465216.1:n.199-2498G>A
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000489348
  gene symbol: TSGA10
  hgvsc: ENST00000489348.1:n.307-2498G>A
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000483914
  gene symbol: TSGA10
  hgvsc: ENST00000483914.1:n.171-2498G>A
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000476849
  gene symbol: TSGA10
  hgvsc: ENST00000476849.1:n.272+3847G>A
  variant of: http://identifiers.org/hgnc/14927
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1999
  bin: 3.75e1
  variant carriers: 42
genotype depth: GenotypeDepth
  all individuals: 3102
  bin: 7.5e0
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18680
  bin: 2.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4152
  bin: 1.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 5.25e1
  variant carriers: 36
genotype depth: GenotypeDepth
  all individuals: 20887
  bin: 2.75e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 6.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 6.25e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1019
  bin: 4.25e1
  variant carriers: 33
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 5.75e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 887
  bin: 1.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 725
  bin: 4.75e1
  variant carriers: 31
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 9.75e1
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 7410
  bin: 3.25e1
  variant carriers: 34
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 134
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 697
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 190
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 771
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 5
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
population: South Asian
population: Other
reference allele: C
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD

2-99767310-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99767310
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 99767310
    reference: chr 2
allele count: 4
allele frequency: 3.528145782983753e-5
allele num: 113374
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000471174
  gene symbol: TSGA10
  hgvsc: ENST00000471174.1:n.270+3846C>T
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000476849
  gene symbol: TSGA10
  hgvsc: ENST00000476849.1:n.272+3846C>T
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000498097
  gene symbol: TSGA10
  hgvsc: ENST00000498097.1:n.347-2499C>T
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000273045
  ensembl protein: ENSP00000386654
  ensembl transcript: ENST00000409684
  gene symbol: C2ORF15
  hgvsc: ENST00000409684.1:c.*13G>A
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000273045
  ensembl protein: ENSP00000302202
  ensembl transcript: ENST00000302513
  gene symbol: C2ORF15
  hgvsc: ENST00000302513.2:c.*13G>A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241962
  ensembl protein: ENSP00000390891
  ensembl transcript: ENST00000424491
  gene symbol: C2orf15
  hgvsc: ENST00000424491.1:c.63+328G>A
  variant of: http://identifiers.org/hgnc/28436
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000465216
  gene symbol: TSGA10
  hgvsc: ENST00000465216.1:n.199-2499C>T
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl protein: ENSP00000377123
  ensembl transcript: ENST00000393483
  gene symbol: TSGA10
  hgvsc: ENST00000393483.3:c.-621+3846C>T
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000489348
  gene symbol: TSGA10
  hgvsc: ENST00000489348.1:n.307-2499C>T
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000483914
  gene symbol: TSGA10
  hgvsc: ENST00000483914.1:n.171-2499C>T
  variant of: http://identifiers.org/hgnc/14927
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 977
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 621
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3208
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 700
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20907
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7424
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 858
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4302
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18577
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1967
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 181
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 823
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 163
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 719
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: South Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: African
reference allele: G
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: QD

2-99767332-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99767332
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 99767332
    reference: chr 2
allele count: 1
allele frequency: 9.188980574495065e-6
allele num: 108826
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000471174
  gene symbol: TSGA10
  hgvsc: ENST00000471174.1:n.270+3824G>A
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000465216
  gene symbol: TSGA10
  hgvsc: ENST00000465216.1:n.199-2521G>A
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000483914
  gene symbol: TSGA10
  hgvsc: ENST00000483914.1:n.171-2521G>A
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000273045
  ensembl protein: ENSP00000302202
  ensembl transcript: ENST00000302513
  gene symbol: C2ORF15
  hgvsc: ENST00000302513.2:c.*35C>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000476849
  gene symbol: TSGA10
  hgvsc: ENST00000476849.1:n.272+3824G>A
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl protein: ENSP00000377123
  ensembl transcript: ENST00000393483
  gene symbol: TSGA10
  hgvsc: ENST00000393483.3:c.-621+3824G>A
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000489348
  gene symbol: TSGA10
  hgvsc: ENST00000489348.1:n.307-2521G>A
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000273045
  ensembl protein: ENSP00000386654
  ensembl transcript: ENST00000409684
  gene symbol: C2ORF15
  hgvsc: ENST00000409684.1:c.*35C>T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241962
  ensembl protein: ENSP00000390891
  ensembl transcript: ENST00000424491
  gene symbol: C2orf15
  hgvsc: ENST00000424491.1:c.63+350C>T
  variant of: http://identifiers.org/hgnc/28436
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000498097
  gene symbol: TSGA10
  hgvsc: ENST00000498097.1:n.347-2521G>A
  variant of: http://identifiers.org/hgnc/14927
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4231
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1753
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7942
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13394
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5477
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 945
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1780
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8681
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 687
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14585
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 930
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1728
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1684
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1950
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: African
population: South Asian
population: Latino
population: East Asian
reference allele: C
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: ClippingRankSum

2-99767338-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99767338
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 99767338
    reference: chr 2
allele count: 7
allele frequency: 6.481841583791692e-5
allele num: 107994
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000498097
  gene symbol: TSGA10
  hgvsc: ENST00000498097.1:n.347-2527A>G
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000483914
  gene symbol: TSGA10
  hgvsc: ENST00000483914.1:n.171-2527A>G
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl protein: ENSP00000377123
  ensembl transcript: ENST00000393483
  gene symbol: TSGA10
  hgvsc: ENST00000393483.3:c.-621+3818A>G
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000465216
  gene symbol: TSGA10
  hgvsc: ENST00000465216.1:n.199-2527A>G
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000476849
  gene symbol: TSGA10
  hgvsc: ENST00000476849.1:n.272+3818A>G
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000471174
  gene symbol: TSGA10
  hgvsc: ENST00000471174.1:n.270+3818A>G
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000273045
  ensembl protein: ENSP00000386654
  ensembl transcript: ENST00000409684
  gene symbol: C2ORF15
  hgvsc: ENST00000409684.1:c.*41T>C
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000273045
  ensembl protein: ENSP00000302202
  ensembl transcript: ENST00000302513
  gene symbol: C2ORF15
  hgvsc: ENST00000302513.2:c.*41T>C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000489348
  gene symbol: TSGA10
  hgvsc: ENST00000489348.1:n.307-2527A>G
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241962
  ensembl protein: ENSP00000390891
  ensembl transcript: ENST00000424491
  gene symbol: C2orf15
  hgvsc: ENST00000424491.1:c.63+356T>C
  variant of: http://identifiers.org/hgnc/28436
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1896
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4844
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 10743
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7704
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 12861
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4575
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 939
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 683
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1701
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13521
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21426
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4378
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4758
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2372
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: T
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: QD

2-99767344-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99767344
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 99767344
    reference: chr 2
allele count: 1
allele frequency: 9.379631192901495e-6
allele num: 106614
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000476849
  gene symbol: TSGA10
  hgvsc: ENST00000476849.1:n.272+3812T>C
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000483914
  gene symbol: TSGA10
  hgvsc: ENST00000483914.1:n.171-2533T>C
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000273045
  ensembl protein: ENSP00000386654
  ensembl transcript: ENST00000409684
  gene symbol: C2ORF15
  hgvsc: ENST00000409684.1:c.*47A>G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl protein: ENSP00000377123
  ensembl transcript: ENST00000393483
  gene symbol: TSGA10
  hgvsc: ENST00000393483.3:c.-621+3812T>C
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000471174
  gene symbol: TSGA10
  hgvsc: ENST00000471174.1:n.270+3812T>C
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241962
  ensembl protein: ENSP00000390891
  ensembl transcript: ENST00000424491
  gene symbol: C2orf15
  hgvsc: ENST00000424491.1:c.63+362A>G
  variant of: http://identifiers.org/hgnc/28436
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000273045
  ensembl protein: ENSP00000302202
  ensembl transcript: ENST00000302513
  gene symbol: C2ORF15
  hgvsc: ENST00000302513.2:c.*47A>G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000489348
  gene symbol: TSGA10
  hgvsc: ENST00000489348.1:n.307-2533T>C
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000465216
  gene symbol: TSGA10
  hgvsc: ENST00000465216.1:n.199-2533T>C
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000498097
  gene symbol: TSGA10
  hgvsc: ENST00000498097.1:n.347-2533T>C
  variant of: http://identifiers.org/hgnc/14927
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1926
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15923
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5101
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 934
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1675
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4243
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10631
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7316
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11008
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 683
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1643
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2195
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4494
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2619
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: African
population: European (Finnish)
population: Other
reference allele: A
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD

2-99767345-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99767345
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 99767345
    reference: chr 2
allele count: 1
allele frequency: 9.426136792097127e-6
allele num: 106088
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000489348
  gene symbol: TSGA10
  hgvsc: ENST00000489348.1:n.307-2534T>C
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000471174
  gene symbol: TSGA10
  hgvsc: ENST00000471174.1:n.270+3811T>C
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241962
  ensembl protein: ENSP00000390891
  ensembl transcript: ENST00000424491
  gene symbol: C2orf15
  hgvsc: ENST00000424491.1:c.63+363A>G
  variant of: http://identifiers.org/hgnc/28436
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000273045
  ensembl protein: ENSP00000386654
  ensembl transcript: ENST00000409684
  gene symbol: C2ORF15
  hgvsc: ENST00000409684.1:c.*48A>G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000498097
  gene symbol: TSGA10
  hgvsc: ENST00000498097.1:n.347-2534T>C
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000476849
  gene symbol: TSGA10
  hgvsc: ENST00000476849.1:n.272+3811T>C
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000465216
  gene symbol: TSGA10
  hgvsc: ENST00000465216.1:n.199-2534T>C
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000483914
  gene symbol: TSGA10
  hgvsc: ENST00000483914.1:n.171-2534T>C
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000273045
  ensembl protein: ENSP00000302202
  ensembl transcript: ENST00000302513
  gene symbol: C2ORF15
  hgvsc: ENST00000302513.2:c.*48A>G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl protein: ENSP00000377123
  ensembl transcript: ENST00000393483
  gene symbol: TSGA10
  hgvsc: ENST00000393483.3:c.-621+3811T>C
  variant of: http://identifiers.org/hgnc/14927
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10522
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1669
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11002
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 936
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1936
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5152
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16042
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7278
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4219
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 528
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1632
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4600
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15445
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: African
population: European (Finnish)
population: South Asian
reference allele: A
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ

2-99767345-A-AG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99767345
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 99767346
    reference: chr 2
allele count: 1
allele frequency: 9.426136792097127e-6
allele num: 106088
alternate allele: AG
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000476849
  gene symbol: TSGA10
  hgvsc: ENST00000476849.1:n.272+3810dupC
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000471174
  gene symbol: TSGA10
  hgvsc: ENST00000471174.1:n.270+3810dupC
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000483914
  gene symbol: TSGA10
  hgvsc: ENST00000483914.1:n.171-2535dupC
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000498097
  gene symbol: TSGA10
  hgvsc: ENST00000498097.1:n.347-2535dupC
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000273045
  ensembl protein: ENSP00000386654
  ensembl transcript: ENST00000409684
  gene symbol: C2ORF15
  hgvsc: ENST00000409684.1:c.*54dupG
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000273045
  ensembl protein: ENSP00000302202
  ensembl transcript: ENST00000302513
  gene symbol: C2ORF15
  hgvsc: ENST00000302513.2:c.*54dupG
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000465216
  gene symbol: TSGA10
  hgvsc: ENST00000465216.1:n.199-2535dupC
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000489348
  gene symbol: TSGA10
  hgvsc: ENST00000489348.1:n.307-2535dupC
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241962
  ensembl protein: ENSP00000390891
  ensembl transcript: ENST00000424491
  gene symbol: C2orf15
  hgvsc: ENST00000424491.1:c.63+369dupG
  variant of: http://identifiers.org/hgnc/28436
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl protein: ENSP00000377123
  ensembl transcript: ENST00000393483
  gene symbol: TSGA10
  hgvsc: ENST00000393483.3:c.-621+3810dupC
  variant of: http://identifiers.org/hgnc/14927
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16042
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4219
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11002
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 936
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1936
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1669
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5152
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7278
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10522
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1292
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1005
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1632
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2649
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
reference allele: A
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: DP

2-99767347-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99767347
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 99767347
    reference: chr 2
allele count: 3
allele frequency: 2.844896256116527e-5
allele num: 105452
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000273045
  ensembl protein: ENSP00000302202
  ensembl transcript: ENST00000302513
  gene symbol: C2ORF15
  hgvsc: ENST00000302513.2:c.*50G>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000471174
  gene symbol: TSGA10
  hgvsc: ENST00000471174.1:n.270+3809C>T
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000498097
  gene symbol: TSGA10
  hgvsc: ENST00000498097.1:n.347-2536C>T
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241962
  ensembl protein: ENSP00000390891
  ensembl transcript: ENST00000424491
  gene symbol: C2orf15
  hgvsc: ENST00000424491.1:c.63+365G>A
  variant of: http://identifiers.org/hgnc/28436
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000273045
  ensembl protein: ENSP00000386654
  ensembl transcript: ENST00000409684
  gene symbol: C2ORF15
  hgvsc: ENST00000409684.1:c.*50G>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000476849
  gene symbol: TSGA10
  hgvsc: ENST00000476849.1:n.272+3809C>T
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl protein: ENSP00000377123
  ensembl transcript: ENST00000393483
  gene symbol: TSGA10
  hgvsc: ENST00000393483.3:c.-621+3809C>T
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000489348
  gene symbol: TSGA10
  hgvsc: ENST00000489348.1:n.307-2536C>T
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000465216
  gene symbol: TSGA10
  hgvsc: ENST00000465216.1:n.199-2536C>T
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000483914
  gene symbol: TSGA10
  hgvsc: ENST00000483914.1:n.171-2536C>T
  variant of: http://identifiers.org/hgnc/14927
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10336
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1946
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16269
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1666
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 935
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4165
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5228
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7243
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10961
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 523
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2585
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5162
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5217
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: ClippingRankSum

2-99767347-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99767347
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 99767347
    reference: chr 2
allele count: 1
allele frequency: 9.482987520388423e-6
allele num: 105452
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl protein: ENSP00000377123
  ensembl transcript: ENST00000393483
  gene symbol: TSGA10
  hgvsc: ENST00000393483.3:c.-621+3809C>G
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000489348
  gene symbol: TSGA10
  hgvsc: ENST00000489348.1:n.307-2536C>G
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000273045
  ensembl protein: ENSP00000302202
  ensembl transcript: ENST00000302513
  gene symbol: C2ORF15
  hgvsc: ENST00000302513.2:c.*50G>C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000471174
  gene symbol: TSGA10
  hgvsc: ENST00000471174.1:n.270+3809C>G
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000273045
  ensembl protein: ENSP00000386654
  ensembl transcript: ENST00000409684
  gene symbol: C2ORF15
  hgvsc: ENST00000409684.1:c.*50G>C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000465216
  gene symbol: TSGA10
  hgvsc: ENST00000465216.1:n.199-2536C>G
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000476849
  gene symbol: TSGA10
  hgvsc: ENST00000476849.1:n.272+3809C>G
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000498097
  gene symbol: TSGA10
  hgvsc: ENST00000498097.1:n.347-2536C>G
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241962
  ensembl protein: ENSP00000390891
  ensembl transcript: ENST00000424491
  gene symbol: C2orf15
  hgvsc: ENST00000424491.1:c.63+365G>C
  variant of: http://identifiers.org/hgnc/28436
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000483914
  gene symbol: TSGA10
  hgvsc: ENST00000483914.1:n.171-2536C>G
  variant of: http://identifiers.org/hgnc/14927
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16269
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10336
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1946
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5228
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1666
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4165
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7243
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10961
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 935
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5162
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1009
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2585
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2755
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
population: African
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD

2-99771423-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99771423
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 99771423
    reference: chr 2
allele count: 3
allele frequency: 2.861503243037009e-4
allele num: 10484
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000144182
  ensembl protein: ENSP00000342071
  ensembl transcript: ENST00000340066
  gene symbol: LIPT1
  hgvsc: ENST00000340066.1:c.-156C>G
  variant of: http://identifiers.org/hgnc/29569
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000144182
  ensembl protein: ENSP00000377116
  ensembl transcript: ENST00000393474
  gene symbol: LIPT1
  hgvsc: ENST00000393474.3:c.-335C>G
  variant of: http://identifiers.org/hgnc/29569
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000144182
  ensembl protein: ENSP00000377114
  ensembl transcript: ENST00000393471
  gene symbol: LIPT1
  hgvsc: ENST00000393471.2:c.-93C>G
  variant of: http://identifiers.org/hgnc/29569
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000144182
  ensembl protein: ENSP00000377118
  ensembl transcript: ENST00000393477
  gene symbol: LIPT1
  hgvsc: ENST00000393477.3:c.-347C>G
  variant of: http://identifiers.org/hgnc/29569
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000144182
  ensembl protein: ENSP00000377115
  ensembl transcript: ENST00000393473
  gene symbol: LIPT1
  hgvsc: ENST00000393473.2:c.-219C>G
  variant of: http://identifiers.org/hgnc/29569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000471174
  gene symbol: TSGA10
  hgvsc: ENST00000471174.1:n.3G>C
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135951
  ensembl transcript: ENST00000476849
  gene symbol: TSGA10
  hgvsc: ENST00000476849.1:n.5G>C
  variant of: http://identifiers.org/hgnc/14927
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241962
  ensembl protein: ENSP00000390891
  ensembl transcript: ENST00000424491
  gene symbol: C2orf15
  hgvsc: ENST00000424491.1:c.63+4441C>G
  variant of: http://identifiers.org/hgnc/28436
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1772
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2521
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1332
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 875
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 187
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 157
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 710
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1839
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 167
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 189
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Latino
population: European (Finnish)
population: Other
reference allele: C
site quality: MQ
site quality: DP
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD

2-99771457-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99771457
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 99771457
    reference: chr 2
allele count: 1
allele frequency: 9.375585974123383e-5
allele num: 10666
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000144182
  ensembl protein: ENSP00000377116
  ensembl transcript: ENST00000393474
  gene symbol: LIPT1
  hgvsc: ENST00000393474.3:c.-301T>A
  variant of: http://identifiers.org/hgnc/29569
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000144182
  ensembl protein: ENSP00000342071
  ensembl transcript: ENST00000340066
  gene symbol: LIPT1
  hgvsc: ENST00000340066.1:c.-122T>A
  variant of: http://identifiers.org/hgnc/29569
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000144182
  ensembl protein: ENSP00000393591
  ensembl transcript: ENST00000434566
  gene symbol: LIPT1
  hgvsc: ENST00000434566.1:c.-122T>A
  variant of: http://identifiers.org/hgnc/29569
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000144182
  ensembl protein: ENSP00000387387
  ensembl transcript: ENST00000449211
  gene symbol: LIPT1
  hgvsc: ENST00000449211.1:c.-59T>A
  variant of: http://identifiers.org/hgnc/29569
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000144182
  ensembl protein: ENSP00000377115
  ensembl transcript: ENST00000393473
  gene symbol: LIPT1
  hgvsc: ENST00000393473.2:c.-185T>A
  variant of: http://identifiers.org/hgnc/29569
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000144182
  ensembl protein: ENSP00000377114
  ensembl transcript: ENST00000393471
  gene symbol: LIPT1
  hgvsc: ENST00000393471.2:c.-59T>A
  variant of: http://identifiers.org/hgnc/29569
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241962
  ensembl protein: ENSP00000390891
  ensembl transcript: ENST00000424491
  gene symbol: C2orf15
  hgvsc: ENST00000424491.1:c.63+4475T>A
  variant of: http://identifiers.org/hgnc/28436
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000144182
  ensembl protein: ENSP00000377118
  ensembl transcript: ENST00000393477
  gene symbol: LIPT1
  hgvsc: ENST00000393477.3:c.-313T>A
  variant of: http://identifiers.org/hgnc/29569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000144182
  ensembl transcript: ENST00000480170
  gene symbol: LIPT1
  hgvsc: ENST00000480170.1:n.2T>A
  variant of: http://identifiers.org/hgnc/29569
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1938
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1039
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1600
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2157
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 404
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 406
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum

http://identifiers.org/exac.variant/2-99771459-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99771459
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 99771459
    reference: chr 2
allele count: 5
allele frequency: 4.68427955780401e-4
allele num: 10674
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000144182
  ensembl transcript: ENST00000480170
  gene symbol: LIPT1
  hgvsc: ENST00000480170.1:n.4A>C
  variant of: http://identifiers.org/hgnc/29569
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000144182
  ensembl protein: ENSP00000393591
  ensembl transcript: ENST00000434566
  gene symbol: LIPT1
  hgvsc: ENST00000434566.1:c.-120A>C
  variant of: http://identifiers.org/hgnc/29569
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241962
  ensembl protein: ENSP00000390891
  ensembl transcript: ENST00000424491
  gene symbol: C2orf15
  hgvsc: ENST00000424491.1:c.63+4477A>C
  variant of: http://identifiers.org/hgnc/28436
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000144182
  ensembl protein: ENSP00000377116
  ensembl transcript: ENST00000393474
  gene symbol: LIPT1
  hgvsc: ENST00000393474.3:c.-299A>C
  variant of: http://identifiers.org/hgnc/29569
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000144182
  ensembl protein: ENSP00000342071
  ensembl transcript: ENST00000340066
  gene symbol: LIPT1
  hgvsc: ENST00000340066.1:c.-120A>C
  variant of: http://identifiers.org/hgnc/29569
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000144182
  ensembl protein: ENSP00000387387
  ensembl transcript: ENST00000449211
  gene symbol: LIPT1
  hgvsc: ENST00000449211.1:c.-57A>C
  variant of: http://identifiers.org/hgnc/29569
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000144182
  ensembl protein: ENSP00000377115
  ensembl transcript: ENST00000393473
  gene symbol: LIPT1
  hgvsc: ENST00000393473.2:c.-183A>C
  variant of: http://identifiers.org/hgnc/29569
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000144182
  ensembl protein: ENSP00000377114
  ensembl transcript: ENST00000393471
  gene symbol: LIPT1
  hgvsc: ENST00000393471.2:c.-57A>C
  variant of: http://identifiers.org/hgnc/29569
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000144182
  ensembl protein: ENSP00000377118
  ensembl transcript: ENST00000393477
  gene symbol: LIPT1
  hgvsc: ENST00000393477.3:c.-311A>C
  variant of: http://identifiers.org/hgnc/29569
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1940
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1039
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1601
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2162
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 406
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
reference allele: A
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum

2-99771463-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99771463
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 99771463
    reference: chr 2
allele count: 1
allele frequency: 9.365049634763064e-5
allele num: 10678
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000144182
  ensembl protein: ENSP00000377114
  ensembl transcript: ENST00000393471
  gene symbol: LIPT1
  hgvsc: ENST00000393471.2:c.-53A>G
  variant of: http://identifiers.org/hgnc/29569
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000144182
  ensembl protein: ENSP00000377118
  ensembl transcript: ENST00000393477
  gene symbol: LIPT1
  hgvsc: ENST00000393477.3:c.-307A>G
  variant of: http://identifiers.org/hgnc/29569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000144182
  ensembl transcript: ENST00000480170
  gene symbol: LIPT1
  hgvsc: ENST00000480170.1:n.8A>G
  variant of: http://identifiers.org/hgnc/29569
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000144182
  ensembl protein: ENSP00000342071
  ensembl transcript: ENST00000340066
  gene symbol: LIPT1
  hgvsc: ENST00000340066.1:c.-116A>G
  variant of: http://identifiers.org/hgnc/29569
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000144182
  ensembl protein: ENSP00000393591
  ensembl transcript: ENST00000434566
  gene symbol: LIPT1
  hgvsc: ENST00000434566.1:c.-116A>G
  variant of: http://identifiers.org/hgnc/29569
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000144182
  ensembl protein: ENSP00000377115
  ensembl transcript: ENST00000393473
  gene symbol: LIPT1
  hgvsc: ENST00000393473.2:c.-179A>G
  variant of: http://identifiers.org/hgnc/29569
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000144182
  ensembl protein: ENSP00000377116
  ensembl transcript: ENST00000393474
  gene symbol: LIPT1
  hgvsc: ENST00000393474.3:c.-295A>G
  variant of: http://identifiers.org/hgnc/29569
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241962
  ensembl protein: ENSP00000390891
  ensembl transcript: ENST00000424491
  gene symbol: C2orf15
  hgvsc: ENST00000424491.1:c.63+4481A>G
  variant of: http://identifiers.org/hgnc/28436
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000273155
  ensembl protein: ENSP00000387111
  ensembl transcript: ENST00000410042
  gene symbol: MRPL30
  hgvsc: ENST00000410042.1:c.-205A>G
  variant of: http://identifiers.org/hgnc/14036
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000144182
  ensembl protein: ENSP00000387387
  ensembl transcript: ENST00000449211
  gene symbol: LIPT1
  hgvsc: ENST00000449211.1:c.-53A>G
  variant of: http://identifiers.org/hgnc/29569
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1616
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1039
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2137
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1931
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 405
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
population: Latino
population: South Asian
reference allele: A
site quality: DP
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff

2-99771464-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99771464
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 99771464
    reference: chr 2
allele count: 1
allele frequency: 9.366804046459348e-5
allele num: 10676
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241962
  ensembl protein: ENSP00000390891
  ensembl transcript: ENST00000424491
  gene symbol: C2orf15
  hgvsc: ENST00000424491.1:c.63+4482C>G
  variant of: http://identifiers.org/hgnc/28436
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000144182
  ensembl protein: ENSP00000387387
  ensembl transcript: ENST00000449211
  gene symbol: LIPT1
  hgvsc: ENST00000449211.1:c.-52C>G
  variant of: http://identifiers.org/hgnc/29569
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000144182
  ensembl protein: ENSP00000393591
  ensembl transcript: ENST00000434566
  gene symbol: LIPT1
  hgvsc: ENST00000434566.1:c.-115C>G
  variant of: http://identifiers.org/hgnc/29569
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000144182
  ensembl protein: ENSP00000342071
  ensembl transcript: ENST00000340066
  gene symbol: LIPT1
  hgvsc: ENST00000340066.1:c.-115C>G
  variant of: http://identifiers.org/hgnc/29569
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000144182
  ensembl protein: ENSP00000377118
  ensembl transcript: ENST00000393477
  gene symbol: LIPT1
  hgvsc: ENST00000393477.3:c.-306C>G
  variant of: http://identifiers.org/hgnc/29569
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000144182
  ensembl protein: ENSP00000377114
  ensembl transcript: ENST00000393471
  gene symbol: LIPT1
  hgvsc: ENST00000393471.2:c.-52C>G
  variant of: http://identifiers.org/hgnc/29569
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000273155
  ensembl protein: ENSP00000387111
  ensembl transcript: ENST00000410042
  gene symbol: MRPL30
  hgvsc: ENST00000410042.1:c.-204C>G
  variant of: http://identifiers.org/hgnc/14036
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000144182
  ensembl protein: ENSP00000377116
  ensembl transcript: ENST00000393474
  gene symbol: LIPT1
  hgvsc: ENST00000393474.3:c.-294C>G
  variant of: http://identifiers.org/hgnc/29569
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000144182
  ensembl protein: ENSP00000377115
  ensembl transcript: ENST00000393473
  gene symbol: LIPT1
  hgvsc: ENST00000393473.2:c.-178C>G
  variant of: http://identifiers.org/hgnc/29569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000144182
  ensembl transcript: ENST00000480170
  gene symbol: LIPT1
  hgvsc: ENST00000480170.1:n.9C>G
  variant of: http://identifiers.org/hgnc/29569
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2091
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1926
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1617
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1042
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 210
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
population: East Asian
reference allele: C
site quality: BaseQRankSum

European (Finnish)
type: Population
allele count: 71
allele frequency: 1.495366470092671e-2
allele num: 4748
num of homozygotes: 0

South Asian
type: Population
allele count: 135
allele frequency: 2.078842008007391e-2
allele num: 6494
num of homozygotes: 0

Other
type: Population
allele count: 9
allele frequency: 1.792828685258964e-2
allele num: 502
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.0e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.53e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.93e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 4.1e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -5.17e-1

MQ
type: SiteQuality
SIO_000300: 5.907e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.1e-2

DP
type: SiteQuality
SIO_000300: 1.176001e6

QD
type: SiteQuality
SIO_000300: 2.91e0

East Asian
type: Population
allele count: 3
allele frequency: 5.326704545454545e-4
allele num: 5632
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 502
num of homozygotes: 0

South Asian
type: Population
allele count: 6
allele frequency: 9.239297813366184e-4
allele num: 6494
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.1e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.0e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.53e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.17e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.1e-2

MQ
type: SiteQuality
SIO_000300: 5.907e1

QD
type: SiteQuality
SIO_000300: 2.91e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.93e-2

DP
type: SiteQuality
SIO_000300: 1.176001e6

GenotypeQuality
all individuals: 1372
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 274
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1539
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 122
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4474
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1752
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 620
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4496
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 887
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 140
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1433
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9280
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3060
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3556
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 528
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 397
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 874
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.099868015838099e-4
allele num: 9092
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8338
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.853897679836909e-5
allele num: 61806
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6564
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12038
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11290
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 818
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.102e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.231e0

MQRankSum
type: SiteQuality
SIO_000300: -2.12e-1

MQ
type: SiteQuality
SIO_000300: 5.903e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.22e-1

DP
type: SiteQuality
SIO_000300: 1.469087e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.708e0

FS
type: SiteQuality
SIO_000300: 1.2556e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.1e-3

QD
type: SiteQuality
SIO_000300: 6.58e0

GenotypeQuality
all individuals: 4144
bin: 3.25e1
variant carriers: 1

GenotypeQuality
all individuals: 657
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 395
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1659
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 714
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1539
bin: 9.75e1
variant carriers: 6

GenotypeQuality
all individuals: 1429
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 309
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 921
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 540
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2627
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 874
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25033
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4573
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1378
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 527
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3397
bin: 2.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11994
num of homozygotes: 0

East Asian
type: Population
allele count: 5
allele frequency: 6.028454304316373e-4
allele num: 8294
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11230
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.253302101633157e-5
allele num: 61476
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9060
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6540
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 816
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.05e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.65e-1

MQ
type: SiteQuality
SIO_000300: 5.912e1

DP
type: SiteQuality
SIO_000300: 1.471858e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.5e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.2e0

FS
type: SiteQuality
SIO_000300: 7.571e0

VQSLOD
type: SiteQuality
SIO_000300: -1.075e0

QD
type: SiteQuality
SIO_000300: 8.4e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.376e0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1902
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6568
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12316
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9284
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11312
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 820
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8376
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.201331754009668e-5
allele num: 62474
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -7.580000000000001e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.234e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.78e-1

MQ
type: SiteQuality
SIO_000300: 5.893e1

QD
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SIO_000300: 1.181e1

DP
type: SiteQuality
SIO_000300: 1.449655e6

MQRankSum
type: SiteQuality
SIO_000300: -8.599999999999999e-2

FS
type: SiteQuality
SIO_000300: 3.609e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.8e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 2.73e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 12358
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6566
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 820
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11320
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.59821000479463e-5
allele num: 62570
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9304
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8382
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.903e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.5e-3

MQRankSum
type: SiteQuality
SIO_000300: 3.63e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.3e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.02e-1

QD
type: SiteQuality
SIO_000300: 1.245e1

ReadPosRankSum
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SIO_000300: 1.49e0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.74e-1

FS
type: SiteQuality
SIO_000300: 4.459e0

DP
type: SiteQuality
SIO_000300: 1.457452e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6574
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11346
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8446
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.586193769430874e-5
allele num: 63044
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9408
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12720
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 828
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.489e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.39e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.26e-1

DP
type: SiteQuality
SIO_000300: 1.498057e6

VQSLOD
type: SiteQuality
SIO_000300: 3.29e0

MQ
type: SiteQuality
SIO_000300: 5.97e1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.34e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.97e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.2e-3

GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15488
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.008435428800964e-4
allele num: 9958
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8590
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65338
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11480
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.18e0

FS
type: SiteQuality
SIO_000300: 1.9978e1

MQRankSum
type: SiteQuality
SIO_000300: 6.44e-1

QD
type: SiteQuality
SIO_000300: 1.387e1

VQSLOD
type: SiteQuality
SIO_000300: -2.788e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.0e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.49e-1

DP
type: SiteQuality
SIO_000300: 1.593263e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.1e-3

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11546
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10122
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16374
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.510574018126888e-5
allele num: 66200
num of homozygotes: 0

QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: -8.3e-1

InbreedingCoeff
type: SiteQuality
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FS
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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DP
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MQRankSum
type: SiteQuality
SIO_000300: 1.42e-1

MQ
type: SiteQuality
SIO_000300: 5.912e1

VQSLOD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -7.12e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
type: Population
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allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11548
num of homozygotes: 0

African
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allele frequency: 1.968891514077574e-4
allele num: 10158
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66312
num of homozygotes: 0

ReadPosRankSum
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InbreedingCoeff
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FS
type: SiteQuality
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MQ
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DP
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VQSLOD
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MQRankSum
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BaseQRankSum
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ClippingRankSum
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QD
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 1
allele frequency: 9.773260359655981e-5
allele num: 10232
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66500
num of homozygotes: 0

Latino
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allele num: 11556
num of homozygotes: 0

InbreedingCoeff
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VQSLOD
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ClippingRankSum
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MQRankSum
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FS
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MQ
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QD
type: SiteQuality
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BaseQRankSum
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DP
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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European (Finnish)
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 1.503488092374308e-5
allele num: 66512
num of homozygotes: 0

Latino
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East Asian
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DP
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ReadPosRankSum
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BaseQRankSum
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FS
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MQRankSum
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InbreedingCoeff
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VQSLOD
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ClippingRankSum
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MQ
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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South Asian
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African
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

FS
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DP
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ReadPosRankSum
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MQRankSum
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InbreedingCoeff
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BaseQRankSum
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QD
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ClippingRankSum
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VQSLOD
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele frequency: 0.0e0
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South Asian
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African
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Latino
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European (Non-Finnish)
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East Asian
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VQSLOD
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InbreedingCoeff
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ReadPosRankSum
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ClippingRankSum
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DP
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MQ
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MQRankSum
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FS
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BaseQRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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num of homozygotes: 0

Latino
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European (Non-Finnish)
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allele num: 66590
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Other
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South Asian
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East Asian
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European (Finnish)
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QD
type: SiteQuality
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MQ
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ClippingRankSum
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VQSLOD
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FS
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MQRankSum
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DP
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ReadPosRankSum
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InbreedingCoeff
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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African
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South Asian
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Latino
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European (Finnish)
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European (Non-Finnish)
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Other
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QD
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InbreedingCoeff
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FS
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MQ
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MQRankSum
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BaseQRankSum
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ReadPosRankSum
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VQSLOD
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DP
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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Latino
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European (Finnish)
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African
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South Asian
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Other
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East Asian
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InbreedingCoeff
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MQRankSum
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DP
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ClippingRankSum
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QD
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MQ
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ReadPosRankSum
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FS
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VQSLOD
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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Other
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European (Finnish)
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European (Non-Finnish)
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South Asian
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Latino
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East Asian
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MQRankSum
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QD
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ReadPosRankSum
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FS
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VQSLOD
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InbreedingCoeff
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ClippingRankSum
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BaseQRankSum
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MQ
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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East Asian
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South Asian
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Other
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African
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European (Finnish)
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FS
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InbreedingCoeff
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ClippingRankSum
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BaseQRankSum
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MQ
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QD
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MQRankSum
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DP
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VQSLOD
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele frequency: 6.059871530723549e-5
allele num: 16502
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10310
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66632
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.98e1

QD
type: SiteQuality
SIO_000300: 1.144e1

FS
type: SiteQuality
SIO_000300: 4.664e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.98e0

DP
type: SiteQuality
SIO_000300: 1.631699e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.123e0

MQRankSum
type: SiteQuality
SIO_000300: -8.699999999999999e-2

VQSLOD
type: SiteQuality
SIO_000300: 5.82e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.75e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 44180
bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.001200480192077e-5
allele num: 66640
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10316
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

FS
type: SiteQuality
SIO_000300: 1.152e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.56e0

QD
type: SiteQuality
SIO_000300: 1.222e1

MQRankSum
type: SiteQuality
SIO_000300: 1.14e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.01e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.69e0

MQ
type: SiteQuality
SIO_000300: 5.958e1

DP
type: SiteQuality
SIO_000300: 1.631896e6

ClippingRankSum
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SIO_000300: 1.07e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 66
allele frequency: 7.630057803468208e-3
allele num: 8650
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 987
allele frequency: 1.48109243697479e-2
allele num: 66640
num of homozygotes: 10

European (Finnish)
type: Population
allele count: 59
allele frequency: 8.923169993950392e-3
allele num: 6612
num of homozygotes: 0

South Asian
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allele count: 77
allele frequency: 4.666666666666667e-3
allele num: 16500
num of homozygotes: 0

Other
type: Population
allele count: 10
allele frequency: 1.103752759381899e-2
allele num: 906
num of homozygotes: 0

Latino
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allele count: 88
allele frequency: 7.609823590453131e-3
allele num: 11564
num of homozygotes: 1

African
type: Population
allele count: 21
allele frequency: 2.034883720930233e-3
allele num: 10320
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.63e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.6e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -1.72e-1

DP
type: SiteQuality
SIO_000300: 1.679802e6

MQ
type: SiteQuality
SIO_000300: 5.949e1

QD
type: SiteQuality
SIO_000300: 1.3e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.35e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.559e0

VQSLOD
type: SiteQuality
SIO_000300: 5.28e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10314
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.06060606060606e-5
allele num: 16500
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66646
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.636426e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -2.025e0

QD
type: SiteQuality
SIO_000300: 1.464e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.35e0

FS
type: SiteQuality
SIO_000300: 3.277e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.97e-1

MQ
type: SiteQuality
SIO_000300: 5.841e1

MQRankSum
type: SiteQuality
SIO_000300: 2.72e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.09e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10308
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66648
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.06060606060606e-5
allele num: 16500
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.89e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.568e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.636401e6

MQRankSum
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SIO_000300: 1.68e0

QD
type: SiteQuality
SIO_000300: 1.517e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.39e-1

MQ
type: SiteQuality
SIO_000300: 5.864e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.92e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66644
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10308
num of homozygotes: 0

East Asian
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allele count: 1
allele frequency: 1.156871818602499e-4
allele num: 8644
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -7.68e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.47e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.61e0

DP
type: SiteQuality
SIO_000300: 1.636457e6

VQSLOD
type: SiteQuality
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InbreedingCoeff
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SIO_000300: 3.0e-4

FS
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: -6.67e-1

MQ
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 8.119999999999999e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66644
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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South Asian
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African
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allele count: 1
allele frequency: 9.701202949165696e-5
allele num: 10308
num of homozygotes: 0

Other
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QD
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FS
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MQRankSum
type: SiteQuality
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VQSLOD
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ReadPosRankSum
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BaseQRankSum
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MQ
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DP
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ClippingRankSum
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InbreedingCoeff
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 29

Latino
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allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

South Asian
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allele count: 29
allele frequency: 1.757575757575757e-3
allele num: 16500
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African
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8646
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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Other
type: Population
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allele frequency: 1.103752759381898e-3
allele num: 906
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European (Non-Finnish)
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MQRankSum
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BaseQRankSum
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ClippingRankSum
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ReadPosRankSum
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MQ
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DP
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InbreedingCoeff
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QD
type: SiteQuality
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FS
type: SiteQuality
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66648
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

African
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allele count: 2
allele frequency: 1.941370607649e-4
allele num: 10302
num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

DP
type: SiteQuality
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InbreedingCoeff
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FS
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VQSLOD
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BaseQRankSum
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SIO_000300: -1.685e0

ReadPosRankSum
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SIO_000300: 6.820000000000001e-1

MQ
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SIO_000300: 5.844e1

ClippingRankSum
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SIO_000300: -5.75e-1

QD
type: SiteQuality
SIO_000300: 1.325e1

MQRankSum
type: SiteQuality
SIO_000300: 1.28e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10300
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.500555205426008e-5
allele num: 66642
num of homozygotes: 0

VQSLOD
type: SiteQuality
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InbreedingCoeff
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QD
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ClippingRankSum
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MQ
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FS
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SIO_000300: 6.6e-1

BaseQRankSum
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SIO_000300: 5.42e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.33e0

DP
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SIO_000300: 1.636347e6

MQRankSum
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SIO_000300: 1.1e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66634
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 2
allele frequency: 1.212121212121212e-4
allele num: 16500
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.486e1

VQSLOD
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DP
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SIO_000300: 1.636196e6

ClippingRankSum
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InbreedingCoeff
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ReadPosRankSum
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FS
type: SiteQuality
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BaseQRankSum
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SIO_000300: -1.968e0

MQ
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SIO_000300: 6.0e1

MQRankSum
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SIO_000300: 2.8e-2

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16498
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10266
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500780405811022e-5
allele num: 66632
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.092e1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.33e0

FS
type: SiteQuality
SIO_000300: 9.93e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.5e-2

VQSLOD
type: SiteQuality
SIO_000300: 6.41e-1

DP
type: SiteQuality
SIO_000300: 1.63559e6

ClippingRankSum
type: SiteQuality
SIO_000300: 8.9e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.5e-1

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10260
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500780405811022e-5
allele num: 66632
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16498
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.13e0

FS
type: SiteQuality
SIO_000300: 4.883e0

MQ
type: SiteQuality
SIO_000300: 5.933e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

DP
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -2.657e0

VQSLOD
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 9.78e-1

ReadPosRankSum
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.322e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10252
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
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allele count: 1
allele frequency: 1.156871818602499e-4
allele num: 8644
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16498
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66624
num of homozygotes: 0

MQRankSum
type: SiteQuality
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ReadPosRankSum
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InbreedingCoeff
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FS
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DP
type: SiteQuality
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MQ
type: SiteQuality
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BaseQRankSum
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ClippingRankSum
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VQSLOD
type: SiteQuality
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QD
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SIO_000300: 1.191e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
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allele count: 2
allele frequency: 1.951219512195122e-4
allele num: 10250
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.5008254539997e-5
allele num: 66630
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11554
num of homozygotes: 0

BaseQRankSum
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InbreedingCoeff
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ReadPosRankSum
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MQ
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QD
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DP
type: SiteQuality
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VQSLOD
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MQRankSum
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ClippingRankSum
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FS
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SIO_000300: 1.054e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

Other
type: Population
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allele num: 906
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.500960614793468e-5
allele num: 66624
num of homozygotes: 0

East Asian
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South Asian
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allele frequency: 0.0e0
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Latino
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num of homozygotes: 0

African
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MQRankSum
type: SiteQuality
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QD
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VQSLOD
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MQ
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BaseQRankSum
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ClippingRankSum
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DP
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FS
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ReadPosRankSum
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InbreedingCoeff
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.75e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10252
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
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allele count: 3
allele frequency: 3.470615455807496e-4
allele num: 8644
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16498
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66624
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.51e-1

InbreedingCoeff
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SIO_000300: 4.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -3.955e0

VQSLOD
type: SiteQuality
SIO_000300: 3.06e0

QD
type: SiteQuality
SIO_000300: 1.416e1

MQRankSum
type: SiteQuality
SIO_000300: 3.45e-1

FS
type: SiteQuality
SIO_000300: 1.288e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.78e-1

MQ
type: SiteQuality
SIO_000300: 5.973e1

DP
type: SiteQuality
SIO_000300: 1.635171e6

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 7.75e1
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GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10248
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11554
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16496
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500960614793468e-5
allele num: 66624
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.61e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

FS
type: SiteQuality
SIO_000300: 7.741e0

QD
type: SiteQuality
SIO_000300: 1.155e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.99e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.08e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.24e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.61e-1

DP
type: SiteQuality
SIO_000300: 1.634959e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10244
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.063545961678389e-5
allele num: 16492
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11554
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66626
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.64e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.69e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 1.6e-2

DP
type: SiteQuality
SIO_000300: 1.63461e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 7.75e-1

FS
type: SiteQuality
SIO_000300: 6.863e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.35e0

QD
type: SiteQuality
SIO_000300: 1.329e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 7
bin: 7.5e0
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66620
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.212856276531231e-4
allele num: 16490
num of homozygotes: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11552
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10226
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 3.261e1

DP
type: SiteQuality
SIO_000300: 1.634458e6

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 2.79e-1

MQ
type: SiteQuality
SIO_000300: 5.968e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.74e-2

GenotypeQuality
all individuals: 1141
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 30
bin: 4.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10184
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11548
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.501997656883655e-5
allele num: 66578
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16486
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

QD
type: SiteQuality
SIO_000300: 8.84e0

MQRankSum
type: SiteQuality
SIO_000300: -6.76e-1

FS
type: SiteQuality
SIO_000300: 1.271e0

VQSLOD
type: SiteQuality
SIO_000300: 1.6e-2

MQ
type: SiteQuality
SIO_000300: 5.942e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.293e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.94e-1

DP
type: SiteQuality
SIO_000300: 1.633828e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.24e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11548
num of homozygotes: 0

African
type: Population
allele count: 10
allele frequency: 9.819324430479183e-4
allele num: 10184
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16488
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66574
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.965e1

ClippingRankSum
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VQSLOD
type: SiteQuality
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BaseQRankSum
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FS
type: SiteQuality
SIO_000300: 5.3e-1

InbreedingCoeff
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SIO_000300: -3.0e-4

DP
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 8.75e-1

MQRankSum
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.582e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 33

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.8405825624877e-5
allele num: 10162
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 32
allele frequency: 3.702846563295534e-3
allele num: 8642
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11548
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66566
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.54e-2

DP
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VQSLOD
type: SiteQuality
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QD
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MQRankSum
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MQ
type: SiteQuality
SIO_000300: 5.943e1

ClippingRankSum
type: SiteQuality
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BaseQRankSum
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FS
type: SiteQuality
SIO_000300: 1.152e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.37e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11546
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 9.015777610818934e-5
allele num: 66550
num of homozygotes: 0

Other
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
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African
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allele count: 0
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allele num: 10140
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VQSLOD
type: SiteQuality
SIO_000300: 7.27e-1

InbreedingCoeff
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DP
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QD
type: SiteQuality
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ClippingRankSum
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MQ
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ReadPosRankSum
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MQRankSum
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FS
type: SiteQuality
SIO_000300: 5.42e-1

BaseQRankSum
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SIO_000300: 3.66e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16182
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10092
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11532
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.50961625554784e-5
allele num: 66242
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.27e0

FS
type: SiteQuality
SIO_000300: 3.281e0

QD
type: SiteQuality
SIO_000300: 1.019e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -1.762e0

MQ
type: SiteQuality
SIO_000300: 5.947e1

DP
type: SiteQuality
SIO_000300: 1.625298e6

VQSLOD
type: SiteQuality
SIO_000300: 2.96e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.03e0

MQRankSum
type: SiteQuality
SIO_000300: 2.13e-1

GenotypeQuality
all individuals: 69
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1130
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GenotypeQuality
all individuals: 560
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15698
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.514233797698365e-5
allele num: 66040
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11520
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10070
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 8.77e-1

FS
type: SiteQuality
SIO_000300: 1.858e0

QD
type: SiteQuality
SIO_000300: 1.114e1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.14e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.610000000000001e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.4e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -1.81e-1

DP
type: SiteQuality
SIO_000300: 1.614834e6

MQ
type: SiteQuality
SIO_000300: 5.992e1

VQSLOD
type: SiteQuality
SIO_000300: 2.69e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 10

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66044
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15696
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11520
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10074
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.116071428571429e-3
allele num: 896
num of homozygotes: 0

East Asian
type: Population
allele count: 9
allele frequency: 1.043357291908185e-3
allele num: 8626
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 4.5e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.9e-3

QD
type: SiteQuality
SIO_000300: 1.476e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.6e-2

MQRankSum
type: SiteQuality
SIO_000300: 2.78e-1

MQ
type: SiteQuality
SIO_000300: 5.973e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.5e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.34e-1

DP
type: SiteQuality
SIO_000300: 1.614981e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1129
bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15406
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11514
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65894
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.942334460131238e-5
allele num: 10058
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 5.78e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.42e0

DP
type: SiteQuality
SIO_000300: 1.607041e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.49e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.68e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.3e-3

QD
type: SiteQuality
SIO_000300: 1.265e1

MQ
type: SiteQuality
SIO_000300: 5.968e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.024e0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 6
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.517542794706811e-5
allele num: 65896
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11514
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15404
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10060
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -8.631e-1

FS
type: SiteQuality
SIO_000300: 9.22e-1

MQ
type: SiteQuality
SIO_000300: 5.954e1

DP
type: SiteQuality
SIO_000300: 1.606975e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.6e-3

MQRankSum
type: SiteQuality
SIO_000300: 7.17e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.94e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.5e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.052e0

QD
type: SiteQuality
SIO_000300: 7.85e0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 10

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14798
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65628
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

African
type: Population
allele count: 9
allele frequency: 8.982035928143712e-4
allele num: 10020
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.695652173913044e-5
allele num: 11500
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.11e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.07e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.7e-3

VQSLOD
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 1.37e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.241e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.57e-1

MQ
type: SiteQuality
SIO_000300: 5.95e1

DP
type: SiteQuality
SIO_000300: 1.59326e6

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11490
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9968
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 874
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.530175052025952e-5
allele num: 65352
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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QD
type: SiteQuality
SIO_000300: 1.104e1

ReadPosRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
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VQSLOD
type: SiteQuality
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BaseQRankSum
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DP
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ClippingRankSum
type: SiteQuality
SIO_000300: 2.92e-1

FS
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 1.13e-2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8550
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.376807317792859e-5
allele num: 13556
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64986
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9916
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11470
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.42e-1

ReadPosRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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DP
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InbreedingCoeff
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FS
type: SiteQuality
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BaseQRankSum
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QD
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MQ
type: SiteQuality
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MQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8550
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64974
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11468
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 856
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9916
num of homozygotes: 0

South Asian
type: Population
allele count: 5
allele frequency: 3.692762186115214e-4
allele num: 13540
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.01e-1

FS
type: SiteQuality
SIO_000300: 1.537e0

QD
type: SiteQuality
SIO_000300: 1.55e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.58e-1

DP
type: SiteQuality
SIO_000300: 1.559829e6

ClippingRankSum
type: SiteQuality
SIO_000300: 7.05e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.24e0

VQSLOD
type: SiteQuality
SIO_000300: 3.42e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.399999999999999e-3

MQ
type: SiteQuality
SIO_000300: 5.971e1

GenotypeQuality
all individuals: 1117
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 224
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2061
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 97
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 217
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 93
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 660
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7199
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 324
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1963
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 472
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 37358
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 445
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 556
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 104
bin: 4.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 848
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12968
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8490
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.549474728067185e-5
allele num: 64538
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11454
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9842
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.9e-3

QD
type: SiteQuality
SIO_000300: 1.049e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.36e-1

DP
type: SiteQuality
SIO_000300: 1.540363e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.92e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.021e1

MQRankSum
type: SiteQuality
SIO_000300: 7.47e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -8.06e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.06e0

GenotypeQuality
all individuals: 88
bin: 1.25e1
variant carriers: 2

GenotypeQuality
all individuals: 1073
bin: 8.25e1
variant carriers: 8

GenotypeQuality
all individuals: 84
bin: 4.75e1
variant carriers: 2

GenotypeQuality
all individuals: 2724
bin: 9.75e1
variant carriers: 1105

GenotypeQuality
all individuals: 424
bin: 8.75e1
variant carriers: 4

GenotypeQuality
all individuals: 666
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 466
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7042
bin: 6.75e1
variant carriers: 2

GenotypeQuality
all individuals: 160
bin: 1.75e1
variant carriers: 3

GenotypeQuality
all individuals: 37141
bin: 6.25e1
variant carriers: 3

GenotypeQuality
all individuals: 608
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 160
bin: 5.25e1
variant carriers: 5

GenotypeQuality
all individuals: 296
bin: 3.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1897
bin: 7.75e1
variant carriers: 2

GenotypeQuality
all individuals: 530
bin: 9.25e1
variant carriers: 3

European (Finnish)
type: Population
allele count: 13
allele frequency: 1.968503937007874e-3
allele num: 6604
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8488
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 731
allele frequency: 1.132630926557174e-2
allele num: 64540
num of homozygotes: 4

South Asian
type: Population
allele count: 331
allele frequency: 2.554800864464341e-2
allele num: 12956
num of homozygotes: 12

African
type: Population
allele count: 25
allele frequency: 2.540650406504065e-3
allele num: 9840
num of homozygotes: 0

Latino
type: Population
allele count: 32
allele frequency: 2.794759825327511e-3
allele num: 11450
num of homozygotes: 0

Other
type: Population
allele count: 2
allele frequency: 2.358490566037736e-3
allele num: 848
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 5.54e0

DP
type: SiteQuality
SIO_000300: 1.565941e6

ClippingRankSum
type: SiteQuality
SIO_000300: -3.9e-2

QD
type: SiteQuality
SIO_000300: 1.567e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.28e0

MQRankSum
type: SiteQuality
SIO_000300: 1.83e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.66e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.16e-1

GenotypeQuality
all individuals: 5239
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 542
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 77
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 151
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2028
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 434
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 75
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 494
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 687
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1085
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 613
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7169
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 298
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 132
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1926
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8490
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 2.619172341540073e-4
allele num: 11454
num of homozygotes: 0

South Asian
type: Population
allele count: 9
allele frequency: 7.007162877608222e-4
allele num: 12844
num of homozygotes: 0

African
type: Population
allele count: 4
allele frequency: 4.065867046147591e-4
allele num: 9838
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 848
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 33
allele frequency: 4.996971532404603e-3
allele num: 6604
num of homozygotes: 1

European (Non-Finnish)
type: Population
allele count: 118
allele frequency: 1.830081578212724e-3
allele num: 64478
num of homozygotes: 1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.935e0

MQ
type: SiteQuality
SIO_000300: 5.969e1

DP
type: SiteQuality
SIO_000300: 1.545711e6

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.51e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.27e0

MQRankSum
type: SiteQuality
SIO_000300: 2.58e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.3e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -1.59e-1

QD
type: SiteQuality
SIO_000300: 1.305e1

GenotypeQuality
all individuals: 2028
bin: 9.75e1
variant carriers: 334

GenotypeQuality
all individuals: 154
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 159
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1883
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 98
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 186
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 814
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 370
bin: 3.75e1
variant carriers: 1

GenotypeQuality
all individuals: 5546
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 145
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 426
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1057
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 531
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36503
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1978
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7030
bin: 6.75e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8456
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 53
allele frequency: 8.272718758780009e-4
allele num: 64066
num of homozygotes: 0

Latino
type: Population
allele count: 30
allele frequency: 2.624212736179146e-3
allele num: 11432
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 6
allele frequency: 9.090909090909091e-4
allele num: 6600
num of homozygotes: 0

African
type: Population
allele count: 249
allele frequency: 2.54601226993865e-2
allele num: 9780
num of homozygotes: 5

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12284
num of homozygotes: 0

Other
type: Population
allele count: 2
allele frequency: 2.398081534772182e-3
allele num: 834
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.434e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.38e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.52e-2

MQRankSum
type: SiteQuality
SIO_000300: 2.64e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.53307e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.59e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.8e-2

VQSLOD
type: SiteQuality
SIO_000300: 6.3e0

GenotypeQuality
all individuals: 1979
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1056
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7063
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 177
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1891
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 94
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 121
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5758
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 93
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 844
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 430
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 178
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 382
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 536
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1733
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 36478
bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8434
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12314
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 834
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.247461968575266e-5
allele num: 64026
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11428
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9738
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.2e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

FS
type: SiteQuality
SIO_000300: 6.56e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.77e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.2e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.62e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.47e0

MQ
type: SiteQuality
SIO_000300: 5.962e1

DP
type: SiteQuality
SIO_000300: 1.522127e6

QD
type: SiteQuality
SIO_000300: 1.347e1

GenotypeQuality
all individuals: 6627
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4911
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23496
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 930
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1364
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4015
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2368
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 417
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3710
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1523
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 219
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 801
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1638
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 765
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 529
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1022
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6572
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62378
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 794
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9402
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10242
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11322
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.232134056185313e-4
allele num: 8116
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.431e0

MQRankSum
type: SiteQuality
SIO_000300: -3.58e-1

MQ
type: SiteQuality
SIO_000300: 5.942e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.38e0

QD
type: SiteQuality
SIO_000300: 1.439e1

VQSLOD
type: SiteQuality
SIO_000300: 7.0e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.8e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.352601e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.112e0

GenotypeQuality
all individuals: 4490
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 365
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 873
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 528
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2151
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1889
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1660
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6426
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1607
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 987
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 196
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 416
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1013
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1734
bin: 9.75e1
variant carriers: 7

GenotypeQuality
all individuals: 2506
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 844
bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11278
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 786
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9358
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8030
num of homozygotes: 0

South Asian
type: Population
allele count: 7
allele frequency: 7.026701465569163e-4
allele num: 9962
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62010
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6570
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.63e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.610000000000001e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -3.65e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.26e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.38e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-3

FS
type: SiteQuality
SIO_000300: 4.547e0

DP
type: SiteQuality
SIO_000300: 1.321576e6

QD
type: SiteQuality
SIO_000300: 1.657e1

GenotypeQuality
all individuals: 2167
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 315
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1245
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5631
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2607
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16408
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1726
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1574
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1005
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1405
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 394
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 419
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4453
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5164
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4599
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 529
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11198
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61378
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9582
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7872
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.079680414597279e-4
allele num: 9262
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6550
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Other
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allele frequency: 0.0e0
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ReadPosRankSum
type: SiteQuality
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DP
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BaseQRankSum
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FS
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InbreedingCoeff
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SIO_000300: -3.8e-3

MQRankSum
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SIO_000300: 9.64e-1

MQ
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VQSLOD
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ClippingRankSum
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SIO_000300: 5.01e-1

QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele frequency: 0.0e0
allele num: 7838
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 1.636339835056945e-5
allele num: 61112
num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 772
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 9214
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6544
num of homozygotes: 0

South Asian
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ClippingRankSum
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VQSLOD
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FS
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QD
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MQRankSum
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InbreedingCoeff
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DP
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ReadPosRankSum
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BaseQRankSum
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6544
num of homozygotes: 0

South Asian
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Latino
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 1.636339835056945e-5
allele num: 61112
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East Asian
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VQSLOD
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MQRankSum
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ReadPosRankSum
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FS
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InbreedingCoeff
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BaseQRankSum
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ClippingRankSum
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MQ
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QD
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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African
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allele frequency: 2.182453077258839e-4
allele num: 9164
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Latino
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele num: 9338
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European (Finnish)
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allele frequency: 0.0e0
allele num: 6540
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ReadPosRankSum
type: SiteQuality
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MQ
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InbreedingCoeff
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MQRankSum
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BaseQRankSum
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FS
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VQSLOD
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DP
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QD
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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East Asian
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allele num: 7766
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Other
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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BaseQRankSum
type: SiteQuality
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VQSLOD
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DP
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MQ
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ReadPosRankSum
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MQRankSum
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FS
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InbreedingCoeff
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ClippingRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 3

African
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European (Non-Finnish)
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South Asian
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East Asian
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Latino
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allele num: 88
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European (Finnish)
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allele num: 0
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Other
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MQ
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DP
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FS
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QD
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ClippingRankSum
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ReadPosRankSum
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MQRankSum
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BaseQRankSum
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InbreedingCoeff
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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African
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European (Finnish)
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East Asian
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Other
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European (Non-Finnish)
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South Asian
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BaseQRankSum
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ClippingRankSum
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MQ
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InbreedingCoeff
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VQSLOD
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DP
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FS
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ReadPosRankSum
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QD
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MQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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East Asian
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South Asian
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European (Non-Finnish)
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Latino
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allele frequency: 1.08695652173913e-2
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European (Finnish)
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Other
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QD
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BaseQRankSum
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MQ
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ReadPosRankSum
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InbreedingCoeff
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FS
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MQRankSum
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VQSLOD
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DP
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

European (Finnish)
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European (Non-Finnish)
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East Asian
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African
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Other
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Latino
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South Asian
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DP
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FS
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QD
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ReadPosRankSum
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BaseQRankSum
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VQSLOD
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MQRankSum
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ClippingRankSum
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MQ
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InbreedingCoeff
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GenotypeQuality
all individuals: 16
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 224
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1865
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 516
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 560
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 7
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 832
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 178
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 408
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2186
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 84
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 405
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 190
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 92
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 118
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2670
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.337971635001338e-4
allele num: 7474
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 132
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.95e-1