2-64796295-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64796295
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 64796295
    reference: chr 2
allele count: 3
allele frequency: 2.471576866040534e-5
allele num: 121380
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl transcript: ENST00000487769
  gene symbol: AFTPH
  hgvsc: ENST00000487769.1:n.535-3785C>T
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000386913
  ensembl transcript: ENST00000409183
  gene symbol: AFTPH
  hgvsc: ENST00000409183.1:c.1050C>T
  hgvsp: ENST00000409183.1:c.1050C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000387071
  ensembl transcript: ENST00000409933
  gene symbol: AFTPH
  hgvsc: ENST00000409933.1:c.2157C>T
  hgvsp: ENST00000409933.1:c.2157C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000238856
  ensembl transcript: ENST00000238856
  gene symbol: AFTPH
  hgvsc: ENST00000238856.4:c.2157C>T
  hgvsp: ENST00000238856.4:c.2157C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000238855
  ensembl transcript: ENST00000238855
  gene symbol: AFTPH
  hgvsc: ENST00000238855.7:c.2157C>T
  hgvsp: ENST00000238855.7:c.2157C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000119844
  ensembl transcript: ENST00000498706
  gene symbol: AFTPH
  hgvsc: ENST00000498706.1:n.2275C>T
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000397726
  ensembl transcript: ENST00000422803
  gene symbol: AFTPH
  hgvsc: ENST00000422803.1:c.2157C>T
  hgvsp: ENST00000422803.1:c.2157C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25951
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1247
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2865
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1863
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7369
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2857
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4389
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7163
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7242
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1657
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8012
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5958
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 807
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7583
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 599
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8511
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1622
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3187
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Gly719Gly
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: QD

2-64796296-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64796296
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 64796296
    reference: chr 2
allele count: 1
allele frequency: 8.2387253044209e-6
allele num: 121378
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000238856
  ensembl transcript: ENST00000238856
  gene symbol: AFTPH
  hgvsc: ENST00000238856.4:c.2158G>T
  hgvsp: ENSP00000238856.4:p.Gly720Cys
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000397726
  ensembl transcript: ENST00000422803
  gene symbol: AFTPH
  hgvsc: ENST00000422803.1:c.2158G>T
  hgvsp: ENSP00000397726.1:p.Gly720Cys
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000386913
  ensembl transcript: ENST00000409183
  gene symbol: AFTPH
  hgvsc: ENST00000409183.1:c.1051G>T
  hgvsp: ENSP00000386913.1:p.Gly351Cys
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl transcript: ENST00000487769
  gene symbol: AFTPH
  hgvsc: ENST00000487769.1:n.535-3784G>T
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000119844
  ensembl transcript: ENST00000498706
  gene symbol: AFTPH
  hgvsc: ENST00000498706.1:n.2276G>T
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000238855
  ensembl transcript: ENST00000238855
  gene symbol: AFTPH
  hgvsc: ENST00000238855.7:c.2158G>T
  hgvsp: ENSP00000238855.7:p.Gly720Cys
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000387071
  ensembl transcript: ENST00000409933
  gene symbol: AFTPH
  hgvsc: ENST00000409933.1:c.2158G>T
  hgvsp: ENSP00000387071.1:p.Gly720Cys
  variant of: http://identifiers.org/hgnc/25951
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7583
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1863
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7367
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2864
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7162
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2857
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4389
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1661
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7237
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 599
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 807
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5959
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8013
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1247
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8505
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Gly720Cys
num of homozygotes: 0
population: East Asian
population: South Asian
population: Other
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP

2-64796310-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64796310
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 64796310
    reference: chr 2
allele count: 1
allele frequency: 8.241033755274261e-6
allele num: 121344
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000238855
  ensembl transcript: ENST00000238855
  gene symbol: AFTPH
  hgvsc: ENST00000238855.7:c.2172C>T
  hgvsp: ENST00000238855.7:c.2172C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000386913
  ensembl transcript: ENST00000409183
  gene symbol: AFTPH
  hgvsc: ENST00000409183.1:c.1065C>T
  hgvsp: ENST00000409183.1:c.1065C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000387071
  ensembl transcript: ENST00000409933
  gene symbol: AFTPH
  hgvsc: ENST00000409933.1:c.2172C>T
  hgvsp: ENST00000409933.1:c.2172C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000238856
  ensembl transcript: ENST00000238856
  gene symbol: AFTPH
  hgvsc: ENST00000238856.4:c.2172C>T
  hgvsp: ENST00000238856.4:c.2172C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000119844
  ensembl transcript: ENST00000498706
  gene symbol: AFTPH
  hgvsc: ENST00000498706.1:n.2290C>T
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000397726
  ensembl transcript: ENST00000422803
  gene symbol: AFTPH
  hgvsc: ENST00000422803.1:c.2172C>T
  hgvsp: ENST00000422803.1:c.2172C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl transcript: ENST00000487769
  gene symbol: AFTPH
  hgvsc: ENST00000487769.1:n.535-3770C>T
  variant of: http://identifiers.org/hgnc/25951
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8005
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1247
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1677
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7350
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2863
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1861
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5958
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 599
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7583
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7162
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4388
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7218
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2858
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 807
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2948
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3184
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8504
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35449
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Asn724Asn
num of homozygotes: 0
population: East Asian
population: South Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: African
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD

http://identifiers.org/exac.variant/2-64796317-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64796317
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 64796317
    reference: chr 2
allele count: 1
allele frequency: 8.244023083264634e-6
allele num: 121300
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000386913
  ensembl transcript: ENST00000409183
  gene symbol: AFTPH
  hgvsc: ENST00000409183.1:c.1072C>A
  hgvsp: ENSP00000386913.1:p.Leu358Ile
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000119844
  ensembl transcript: ENST00000498706
  gene symbol: AFTPH
  hgvsc: ENST00000498706.1:n.2297C>A
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000238856
  ensembl transcript: ENST00000238856
  gene symbol: AFTPH
  hgvsc: ENST00000238856.4:c.2179C>A
  hgvsp: ENSP00000238856.4:p.Leu727Ile
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl transcript: ENST00000487769
  gene symbol: AFTPH
  hgvsc: ENST00000487769.1:n.535-3763C>A
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000238855
  ensembl transcript: ENST00000238855
  gene symbol: AFTPH
  hgvsc: ENST00000238855.7:c.2179C>A
  hgvsp: ENSP00000238855.7:p.Leu727Ile
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000397726
  ensembl transcript: ENST00000422803
  gene symbol: AFTPH
  hgvsc: ENST00000422803.1:c.2179C>A
  hgvsp: ENSP00000397726.1:p.Leu727Ile
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000387071
  ensembl transcript: ENST00000409933
  gene symbol: AFTPH
  hgvsc: ENST00000409933.1:c.2179C>A
  hgvsp: ENSP00000387071.1:p.Leu727Ile
  variant of: http://identifiers.org/hgnc/25951
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7149
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1247
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 599
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7583
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 807
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2863
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1861
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8002
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7177
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1673
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4389
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2857
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5957
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7346
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1871
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3588
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35444
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Leu727Ile
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum

2-64796325-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64796325
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 64796325
    reference: chr 2
allele count: 2
allele frequency: 1.649919978881024e-5
allele num: 121218
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000238856
  ensembl transcript: ENST00000238856
  gene symbol: AFTPH
  hgvsc: ENST00000238856.4:c.2187C>T
  hgvsp: ENST00000238856.4:c.2187C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000386913
  ensembl transcript: ENST00000409183
  gene symbol: AFTPH
  hgvsc: ENST00000409183.1:c.1080C>T
  hgvsp: ENST00000409183.1:c.1080C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000387071
  ensembl transcript: ENST00000409933
  gene symbol: AFTPH
  hgvsc: ENST00000409933.1:c.2187C>T
  hgvsp: ENST00000409933.1:c.2187C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000119844
  ensembl transcript: ENST00000498706
  gene symbol: AFTPH
  hgvsc: ENST00000498706.1:n.2305C>T
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000397726
  ensembl transcript: ENST00000422803
  gene symbol: AFTPH
  hgvsc: ENST00000422803.1:c.2187C>T
  hgvsp: ENST00000422803.1:c.2187C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000238855
  ensembl transcript: ENST00000238855
  gene symbol: AFTPH
  hgvsc: ENST00000238855.7:c.2187C>T
  hgvsp: ENST00000238855.7:c.2187C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl transcript: ENST00000487769
  gene symbol: AFTPH
  hgvsc: ENST00000487769.1:n.535-3755C>T
  variant of: http://identifiers.org/hgnc/25951
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7988
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2864
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 599
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1670
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4386
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7315
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7131
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1247
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 807
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5957
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1861
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7139
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7583
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2857
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 174
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35433
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 3587
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ser729Ser
num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: European (Finnish)
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: FS

2-64796351-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64796351
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 64796351
    reference: chr 2
allele count: 1
allele frequency: 8.335000333400014e-6
allele num: 119976
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000386913
  ensembl transcript: ENST00000409183
  gene symbol: AFTPH
  hgvsc: ENST00000409183.1:c.1106T>C
  hgvsp: ENSP00000386913.1:p.Ile369Thr
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000238856
  ensembl transcript: ENST00000238856
  gene symbol: AFTPH
  hgvsc: ENST00000238856.4:c.2213T>C
  hgvsp: ENSP00000238856.4:p.Ile738Thr
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000387071
  ensembl transcript: ENST00000409933
  gene symbol: AFTPH
  hgvsc: ENST00000409933.1:c.2213T>C
  hgvsp: ENSP00000387071.1:p.Ile738Thr
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000238855
  ensembl transcript: ENST00000238855
  gene symbol: AFTPH
  hgvsc: ENST00000238855.7:c.2213T>C
  hgvsp: ENSP00000238855.7:p.Ile738Thr
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000397726
  ensembl transcript: ENST00000422803
  gene symbol: AFTPH
  hgvsc: ENST00000422803.1:c.2213T>C
  hgvsp: ENSP00000397726.1:p.Ile738Thr
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl transcript: ENST00000487769
  gene symbol: AFTPH
  hgvsc: ENST00000487769.1:n.535-3729T>C
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000119844
  ensembl transcript: ENST00000498706
  gene symbol: AFTPH
  hgvsc: ENST00000498706.1:n.2331T>C
  variant of: http://identifiers.org/hgnc/25951
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1161
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7958
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 683
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1860
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4387
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6069
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1578
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 807
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5953
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2863
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 599
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2854
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6718
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7571
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1247
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7063
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6949
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1514
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2847
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1499
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3571
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3015
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Ile738Thr
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: Other
population: African
reference allele: T
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff

http://identifiers.org/exac.variant/2-64796379-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64796379
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 64796379
    reference: chr 2
allele count: 1
allele frequency: 8.475581848693913e-6
allele num: 117986
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl transcript: ENST00000498706
  gene symbol: AFTPH
  hgvsc: ENST00000498706.1:n.2332+27C>A
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000387071
  ensembl transcript: ENST00000409933
  gene symbol: AFTPH
  hgvsc: ENST00000409933.1:c.2214+27C>A
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000386913
  ensembl transcript: ENST00000409183
  gene symbol: AFTPH
  hgvsc: ENST00000409183.1:c.1107+27C>A
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl transcript: ENST00000487769
  gene symbol: AFTPH
  hgvsc: ENST00000487769.1:n.535-3701C>A
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000397726
  ensembl transcript: ENST00000422803
  gene symbol: AFTPH
  hgvsc: ENST00000422803.1:c.2214+27C>A
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000238856
  ensembl transcript: ENST00000238856
  gene symbol: AFTPH
  hgvsc: ENST00000238856.4:c.2214+27C>A
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000238855
  ensembl transcript: ENST00000238855
  gene symbol: AFTPH
  hgvsc: ENST00000238855.7:c.2214+27C>A
  variant of: http://identifiers.org/hgnc/25951
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4385
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1403
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 807
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1057
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7007
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7938
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1247
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5953
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2862
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2891
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4186
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 803
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6045
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7567
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 599
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1860
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2853
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3135
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 242
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1855
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 654
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35411
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 355
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: South Asian
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: C
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: QD

2-64796380-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64796380
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 64796380
    reference: chr 2
allele count: 12
allele frequency: 1.01705258161847e-4
allele num: 117988
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000238856
  ensembl transcript: ENST00000238856
  gene symbol: AFTPH
  hgvsc: ENST00000238856.4:c.2214+28T>G
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000238855
  ensembl transcript: ENST00000238855
  gene symbol: AFTPH
  hgvsc: ENST00000238855.7:c.2214+28T>G
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000397726
  ensembl transcript: ENST00000422803
  gene symbol: AFTPH
  hgvsc: ENST00000422803.1:c.2214+28T>G
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000387071
  ensembl transcript: ENST00000409933
  gene symbol: AFTPH
  hgvsc: ENST00000409933.1:c.2214+28T>G
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000386913
  ensembl transcript: ENST00000409183
  gene symbol: AFTPH
  hgvsc: ENST00000409183.1:c.1107+28T>G
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl transcript: ENST00000487769
  gene symbol: AFTPH
  hgvsc: ENST00000487769.1:n.535-3700T>G
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl transcript: ENST00000498706
  gene symbol: AFTPH
  hgvsc: ENST00000498706.1:n.2332+28T>G
  variant of: http://identifiers.org/hgnc/25951
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7004
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 599
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1423
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 798
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1035
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7567
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6036
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1862
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2920
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4386
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1245
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4165
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2862
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2852
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 808
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5952
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7938
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3566
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1855
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 239
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2933
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 665
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: T
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ

2-64796382-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64796382
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 64796382
    reference: chr 2
allele count: 1
allele frequency: 8.489108473828079e-6
allele num: 117798
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl transcript: ENST00000498706
  gene symbol: AFTPH
  hgvsc: ENST00000498706.1:n.2332+30T>C
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000386913
  ensembl transcript: ENST00000409183
  gene symbol: AFTPH
  hgvsc: ENST00000409183.1:c.1107+30T>C
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000238855
  ensembl transcript: ENST00000238855
  gene symbol: AFTPH
  hgvsc: ENST00000238855.7:c.2214+30T>C
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl transcript: ENST00000487769
  gene symbol: AFTPH
  hgvsc: ENST00000487769.1:n.535-3698T>C
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000387071
  ensembl transcript: ENST00000409933
  gene symbol: AFTPH
  hgvsc: ENST00000409933.1:c.2214+30T>C
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000397726
  ensembl transcript: ENST00000422803
  gene symbol: AFTPH
  hgvsc: ENST00000422803.1:c.2214+30T>C
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000238856
  ensembl transcript: ENST00000238856
  gene symbol: AFTPH
  hgvsc: ENST00000238856.4:c.2214+30T>C
  variant of: http://identifiers.org/hgnc/25951
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 914
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7004
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4038
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1484
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2851
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 598
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4384
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2862
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2950
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1243
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 962
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5953
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 806
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7937
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1860
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6000
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7570
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 274
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2876
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3136
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35406
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1856
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2573
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 700
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
population: South Asian
reference allele: T
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum

2-64796385-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64796385
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 64796385
    reference: chr 2
allele count: 1
allele frequency: 8.502244592572439e-6
allele num: 117616
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000387071
  ensembl transcript: ENST00000409933
  gene symbol: AFTPH
  hgvsc: ENST00000409933.1:c.2214+33A>G
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000238856
  ensembl transcript: ENST00000238856
  gene symbol: AFTPH
  hgvsc: ENST00000238856.4:c.2214+33A>G
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl transcript: ENST00000498706
  gene symbol: AFTPH
  hgvsc: ENST00000498706.1:n.2332+33A>G
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000238855
  ensembl transcript: ENST00000238855
  gene symbol: AFTPH
  hgvsc: ENST00000238855.7:c.2214+33A>G
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000397726
  ensembl transcript: ENST00000422803
  gene symbol: AFTPH
  hgvsc: ENST00000422803.1:c.2214+33A>G
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000386913
  ensembl transcript: ENST00000409183
  gene symbol: AFTPH
  hgvsc: ENST00000409183.1:c.1107+33A>G
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl transcript: ENST00000487769
  gene symbol: AFTPH
  hgvsc: ENST00000487769.1:n.535-3695A>G
  variant of: http://identifiers.org/hgnc/25951
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6998
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7569
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4384
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 929
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5952
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 598
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1545
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5959
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 995
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2928
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1860
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7937
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3968
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 806
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2862
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2851
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1243
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 875
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2839
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1449
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4063
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2546
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2805
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: East Asian
population: Latino
reference allele: A
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD

2-64796390-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64796390
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 64796390
    reference: chr 2
allele count: 1
allele frequency: 8.548908304409527e-6
allele num: 116974
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000238856
  ensembl transcript: ENST00000238856
  gene symbol: AFTPH
  hgvsc: ENST00000238856.4:c.2214+38C>G
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000238855
  ensembl transcript: ENST00000238855
  gene symbol: AFTPH
  hgvsc: ENST00000238855.7:c.2214+38C>G
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl transcript: ENST00000498706
  gene symbol: AFTPH
  hgvsc: ENST00000498706.1:n.2332+38C>G
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl transcript: ENST00000487769
  gene symbol: AFTPH
  hgvsc: ENST00000487769.1:n.535-3690C>G
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000397726
  ensembl transcript: ENST00000422803
  gene symbol: AFTPH
  hgvsc: ENST00000422803.1:c.2214+38C>G
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000387071
  ensembl transcript: ENST00000409933
  gene symbol: AFTPH
  hgvsc: ENST00000409933.1:c.2214+38C>G
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000386913
  ensembl transcript: ENST00000409183
  gene symbol: AFTPH
  hgvsc: ENST00000409183.1:c.1107+38C>G
  variant of: http://identifiers.org/hgnc/25951
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 806
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2788
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5951
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1760
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2851
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4384
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 598
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1860
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5850
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1243
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7932
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7565
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 851
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2862
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6976
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3766
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1293
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2654
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2786
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 296
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1854
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 411
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3130
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 538
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1442
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3657
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Other
population: Latino
population: African
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum

2-64796403-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64796403
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 64796403
    reference: chr 2
allele count: 1
allele frequency: 8.64304235090752e-6
allele num: 115700
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000238856
  ensembl transcript: ENST00000238856
  gene symbol: AFTPH
  hgvsc: ENST00000238856.4:c.2214+51T>A
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl transcript: ENST00000487769
  gene symbol: AFTPH
  hgvsc: ENST00000487769.1:n.535-3677T>A
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000238855
  ensembl transcript: ENST00000238855
  gene symbol: AFTPH
  hgvsc: ENST00000238855.7:c.2214+51T>A
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl transcript: ENST00000498706
  gene symbol: AFTPH
  hgvsc: ENST00000498706.1:n.2332+51T>A
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000387071
  ensembl transcript: ENST00000409933
  gene symbol: AFTPH
  hgvsc: ENST00000409933.1:c.2214+51T>A
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000397726
  ensembl transcript: ENST00000422803
  gene symbol: AFTPH
  hgvsc: ENST00000422803.1:c.2214+51T>A
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000386913
  ensembl transcript: ENST00000409183
  gene symbol: AFTPH
  hgvsc: ENST00000409183.1:c.1107+51T>A
  variant of: http://identifiers.org/hgnc/25951
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5250
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7559
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2371
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2301
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2852
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1377
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 598
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6866
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1243
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3345
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5950
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4384
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7901
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1779
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 806
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2862
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1859
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 478
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 693
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 544
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 686
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3561
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1397
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 337
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1910
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1049
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Finnish)
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: T
site quality: FS
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/2-64796706-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64796706
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 64796706
    reference: chr 2
allele count: 1
allele frequency: 8.255184255712587e-6
allele num: 121136
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000238855
  ensembl transcript: ENST00000238855
  gene symbol: AFTPH
  hgvsc: ENST00000238855.7:c.2215-51A>C
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000238856
  ensembl transcript: ENST00000238856
  gene symbol: AFTPH
  hgvsc: ENST00000238856.4:c.2215-51A>C
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000397726
  ensembl transcript: ENST00000422803
  gene symbol: AFTPH
  hgvsc: ENST00000422803.1:c.2215-51A>C
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl transcript: ENST00000498706
  gene symbol: AFTPH
  hgvsc: ENST00000498706.1:n.2333-51A>C
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000387071
  ensembl transcript: ENST00000409933
  gene symbol: AFTPH
  hgvsc: ENST00000409933.1:c.2215-51A>C
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000386913
  ensembl transcript: ENST00000409183
  gene symbol: AFTPH
  hgvsc: ENST00000409183.1:c.1108-51A>C
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl transcript: ENST00000487769
  gene symbol: AFTPH
  hgvsc: ENST00000487769.1:n.535-3374A>C
  variant of: http://identifiers.org/hgnc/25951
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 3486
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2699
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2355
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 728
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1168
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1570
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11046
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3646
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 648
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 866
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5235
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9177
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7159
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 517
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9247
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2254
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 493
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 159
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5155
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2760
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
reference allele: A
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum

2-64796721-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64796721
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 64796721
    reference: chr 2
allele count: 6
allele frequency: 4.948943400583975e-5
allele num: 121238
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl transcript: ENST00000487769
  gene symbol: AFTPH
  hgvsc: ENST00000487769.1:n.535-3359C>G
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000238855
  ensembl transcript: ENST00000238855
  gene symbol: AFTPH
  hgvsc: ENST00000238855.7:c.2215-36C>G
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000397726
  ensembl transcript: ENST00000422803
  gene symbol: AFTPH
  hgvsc: ENST00000422803.1:c.2215-36C>G
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000386913
  ensembl transcript: ENST00000409183
  gene symbol: AFTPH
  hgvsc: ENST00000409183.1:c.1108-36C>G
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000387071
  ensembl transcript: ENST00000409933
  gene symbol: AFTPH
  hgvsc: ENST00000409933.1:c.2215-36C>G
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl transcript: ENST00000498706
  gene symbol: AFTPH
  hgvsc: ENST00000498706.1:n.2333-36C>G
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000238856
  ensembl transcript: ENST00000238856
  gene symbol: AFTPH
  hgvsc: ENST00000238856.4:c.2215-36C>G
  variant of: http://identifiers.org/hgnc/25951
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3093
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2356
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 517
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1168
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7169
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11120
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3486
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9418
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 648
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1570
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3646
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9180
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5236
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 867
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2735
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2244
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: C
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum

2-64796723-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64796723
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 64796723
    reference: chr 2
allele count: 1
allele frequency: 8.247966876165026e-6
allele num: 121242
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000387071
  ensembl transcript: ENST00000409933
  gene symbol: AFTPH
  hgvsc: ENST00000409933.1:c.2215-34A>G
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl transcript: ENST00000487769
  gene symbol: AFTPH
  hgvsc: ENST00000487769.1:n.535-3357A>G
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000238855
  ensembl transcript: ENST00000238855
  gene symbol: AFTPH
  hgvsc: ENST00000238855.7:c.2215-34A>G
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl transcript: ENST00000498706
  gene symbol: AFTPH
  hgvsc: ENST00000498706.1:n.2333-34A>G
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000386913
  ensembl transcript: ENST00000409183
  gene symbol: AFTPH
  hgvsc: ENST00000409183.1:c.1108-34A>G
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000397726
  ensembl transcript: ENST00000422803
  gene symbol: AFTPH
  hgvsc: ENST00000422803.1:c.2215-34A>G
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000238856
  ensembl transcript: ENST00000238856
  gene symbol: AFTPH
  hgvsc: ENST00000238856.4:c.2215-34A>G
  variant of: http://identifiers.org/hgnc/25951
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3646
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7168
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1168
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9431
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9180
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3486
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 866
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11138
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 648
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 517
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1571
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2355
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3114
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5233
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2737
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4438
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4247
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10664
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3797
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: Other
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: A
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD

2-64796726-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64796726
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 64796726
    reference: chr 2
allele count: 1
allele frequency: 8.246742536698004e-6
allele num: 121260
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000397726
  ensembl transcript: ENST00000422803
  gene symbol: AFTPH
  hgvsc: ENST00000422803.1:c.2215-31T>C
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000238856
  ensembl transcript: ENST00000238856
  gene symbol: AFTPH
  hgvsc: ENST00000238856.4:c.2215-31T>C
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000238855
  ensembl transcript: ENST00000238855
  gene symbol: AFTPH
  hgvsc: ENST00000238855.7:c.2215-31T>C
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl transcript: ENST00000498706
  gene symbol: AFTPH
  hgvsc: ENST00000498706.1:n.2333-31T>C
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000387071
  ensembl transcript: ENST00000409933
  gene symbol: AFTPH
  hgvsc: ENST00000409933.1:c.2215-31T>C
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000386913
  ensembl transcript: ENST00000409183
  gene symbol: AFTPH
  hgvsc: ENST00000409183.1:c.1108-31T>C
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl transcript: ENST00000487769
  gene symbol: AFTPH
  hgvsc: ENST00000487769.1:n.535-3354T>C
  variant of: http://identifiers.org/hgnc/25951
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11144
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5233
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9452
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 648
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3646
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7164
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1570
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3146
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1168
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2355
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 866
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 517
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9184
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3486
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2737
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2250
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5250
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: African
population: East Asian
reference allele: T
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: QD

2-64796727-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64796727
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 64796727
    reference: chr 2
allele count: 358
allele frequency: 2.952382523214963e-3
allele num: 121258
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000386913
  ensembl transcript: ENST00000409183
  gene symbol: AFTPH
  hgvsc: ENST00000409183.1:c.1108-30A>T
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000397726
  ensembl transcript: ENST00000422803
  gene symbol: AFTPH
  hgvsc: ENST00000422803.1:c.2215-30A>T
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl transcript: ENST00000498706
  gene symbol: AFTPH
  hgvsc: ENST00000498706.1:n.2333-30A>T
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl transcript: ENST00000487769
  gene symbol: AFTPH
  hgvsc: ENST00000487769.1:n.535-3353A>T
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000238855
  ensembl transcript: ENST00000238855
  gene symbol: AFTPH
  hgvsc: ENST00000238855.7:c.2215-30A>T
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000238856
  ensembl transcript: ENST00000238856
  gene symbol: AFTPH
  hgvsc: ENST00000238856.4:c.2215-30A>T
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000387071
  ensembl transcript: ENST00000409933
  gene symbol: AFTPH
  hgvsc: ENST00000409933.1:c.2215-30A>T
  variant of: http://identifiers.org/hgnc/25951
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7156
  bin: 4.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 2352
  bin: 5.75e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 9449
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3159
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9141
  bin: 3.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 3693
  bin: 9.75e1
  variant carriers: 106
genotype depth: GenotypeDepth
  all individuals: 667
  bin: 7.75e1
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 5216
  bin: 4.75e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11123
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 869
  bin: 7.25e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 1169
  bin: 6.75e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 3483
  bin: 5.25e1
  variant carriers: 32
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 8.75e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 1581
  bin: 6.25e1
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 9.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 8.25e1
  variant carriers: 17
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2734
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26975
  bin: 9.75e1
  variant carriers: 354
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10761
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 4
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
population: African
population: European (Finnish)
population: Latino
reference allele: A
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP

2-64796729-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64796729
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 64796729
    reference: chr 2
allele count: 2
allele frequency: 1.649430121892886e-5
allele num: 121254
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000238856
  ensembl transcript: ENST00000238856
  gene symbol: AFTPH
  hgvsc: ENST00000238856.4:c.2215-28A>G
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000397726
  ensembl transcript: ENST00000422803
  gene symbol: AFTPH
  hgvsc: ENST00000422803.1:c.2215-28A>G
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl transcript: ENST00000498706
  gene symbol: AFTPH
  hgvsc: ENST00000498706.1:n.2333-28A>G
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000387071
  ensembl transcript: ENST00000409933
  gene symbol: AFTPH
  hgvsc: ENST00000409933.1:c.2215-28A>G
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000386913
  ensembl transcript: ENST00000409183
  gene symbol: AFTPH
  hgvsc: ENST00000409183.1:c.1108-28A>G
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl transcript: ENST00000487769
  gene symbol: AFTPH
  hgvsc: ENST00000487769.1:n.535-3351A>G
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000238855
  ensembl transcript: ENST00000238855
  gene symbol: AFTPH
  hgvsc: ENST00000238855.7:c.2215-28A>G
  variant of: http://identifiers.org/hgnc/25951
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5216
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2354
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3698
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3479
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9462
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1578
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7157
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9136
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1169
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 661
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11122
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 868
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3184
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4430
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3781
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2739
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26965
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
population: Other
reference allele: A
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: DP

2-64796730-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64796730
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 64796730
    reference: chr 2
allele count: 1
allele frequency: 8.246334504312833e-6
allele num: 121266
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000386913
  ensembl transcript: ENST00000409183
  gene symbol: AFTPH
  hgvsc: ENST00000409183.1:c.1108-27T>C
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000387071
  ensembl transcript: ENST00000409933
  gene symbol: AFTPH
  hgvsc: ENST00000409933.1:c.2215-27T>C
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000238855
  ensembl transcript: ENST00000238855
  gene symbol: AFTPH
  hgvsc: ENST00000238855.7:c.2215-27T>C
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl transcript: ENST00000498706
  gene symbol: AFTPH
  hgvsc: ENST00000498706.1:n.2333-27T>C
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000238856
  ensembl transcript: ENST00000238856
  gene symbol: AFTPH
  hgvsc: ENST00000238856.4:c.2215-27T>C
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000397726
  ensembl transcript: ENST00000422803
  gene symbol: AFTPH
  hgvsc: ENST00000422803.1:c.2215-27T>C
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl transcript: ENST00000487769
  gene symbol: AFTPH
  hgvsc: ENST00000487769.1:n.535-3350T>C
  variant of: http://identifiers.org/hgnc/25951
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1169
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1578
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5217
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9466
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 868
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3698
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2354
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3479
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7158
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 661
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3190
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11125
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9134
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2248
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3781
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10802
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26962
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP

2-64796733-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64796733
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 64796733
    reference: chr 2
allele count: 1
allele frequency: 8.244974687927709e-6
allele num: 121286
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl transcript: ENST00000498706
  gene symbol: AFTPH
  hgvsc: ENST00000498706.1:n.2333-24T>C
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000238856
  ensembl transcript: ENST00000238856
  gene symbol: AFTPH
  hgvsc: ENST00000238856.4:c.2215-24T>C
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000386913
  ensembl transcript: ENST00000409183
  gene symbol: AFTPH
  hgvsc: ENST00000409183.1:c.1108-24T>C
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000387071
  ensembl transcript: ENST00000409933
  gene symbol: AFTPH
  hgvsc: ENST00000409933.1:c.2215-24T>C
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000238855
  ensembl transcript: ENST00000238855
  gene symbol: AFTPH
  hgvsc: ENST00000238855.7:c.2215-24T>C
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl transcript: ENST00000487769
  gene symbol: AFTPH
  hgvsc: ENST00000487769.1:n.535-3347T>C
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000397726
  ensembl transcript: ENST00000422803
  gene symbol: AFTPH
  hgvsc: ENST00000422803.1:c.2215-24T>C
  variant of: http://identifiers.org/hgnc/25951
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 867
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3479
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11133
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7157
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9136
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 661
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9480
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5217
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1578
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1170
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3206
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2355
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3698
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3781
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2740
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2248
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: Other
reference allele: T
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum

2-64796734-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64796734
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 64796734
    reference: chr 2
allele count: 3
allele frequency: 2.473533194815474e-5
allele num: 121284
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000238855
  ensembl transcript: ENST00000238855
  gene symbol: AFTPH
  hgvsc: ENST00000238855.7:c.2215-23C>G
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000386913
  ensembl transcript: ENST00000409183
  gene symbol: AFTPH
  hgvsc: ENST00000409183.1:c.1108-23C>G
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl transcript: ENST00000487769
  gene symbol: AFTPH
  hgvsc: ENST00000487769.1:n.535-3346C>G
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000387071
  ensembl transcript: ENST00000409933
  gene symbol: AFTPH
  hgvsc: ENST00000409933.1:c.2215-23C>G
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000238856
  ensembl transcript: ENST00000238856
  gene symbol: AFTPH
  hgvsc: ENST00000238856.4:c.2215-23C>G
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000397726
  ensembl transcript: ENST00000422803
  gene symbol: AFTPH
  hgvsc: ENST00000422803.1:c.2215-23C>G
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl transcript: ENST00000498706
  gene symbol: AFTPH
  hgvsc: ENST00000498706.1:n.2333-23C>G
  variant of: http://identifiers.org/hgnc/25951
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3479
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9484
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7156
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11133
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 661
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9138
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1580
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3698
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5217
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3209
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 867
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2355
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1170
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2250
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10853
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5248
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4244
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26964
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD

2-64796738-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64796738
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 64796738
    reference: chr 2
allele count: 1
allele frequency: 8.244159013339049e-6
allele num: 121298
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl transcript: ENST00000487769
  gene symbol: AFTPH
  hgvsc: ENST00000487769.1:n.535-3342C>G
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000238855
  ensembl transcript: ENST00000238855
  gene symbol: AFTPH
  hgvsc: ENST00000238855.7:c.2215-19C>G
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000387071
  ensembl transcript: ENST00000409933
  gene symbol: AFTPH
  hgvsc: ENST00000409933.1:c.2215-19C>G
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000238856
  ensembl transcript: ENST00000238856
  gene symbol: AFTPH
  hgvsc: ENST00000238856.4:c.2215-19C>G
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl transcript: ENST00000498706
  gene symbol: AFTPH
  hgvsc: ENST00000498706.1:n.2333-19C>G
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000397726
  ensembl transcript: ENST00000422803
  gene symbol: AFTPH
  hgvsc: ENST00000422803.1:c.2215-19C>G
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000386913
  ensembl transcript: ENST00000409183
  gene symbol: AFTPH
  hgvsc: ENST00000409183.1:c.1108-19C>G
  variant of: http://identifiers.org/hgnc/25951
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9495
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11139
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1170
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2354
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 661
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3698
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3480
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3217
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9138
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1578
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 867
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5217
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7160
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2744
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3783
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4244
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
reference allele: C
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum

2-64796746-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64796746
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 64796746
    reference: chr 2
allele count: 2
allele frequency: 1.648532805802836e-5
allele num: 121320
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000238856
  ensembl transcript: ENST00000238856
  gene symbol: AFTPH
  hgvsc: ENST00000238856.4:c.2215-11C>T
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000397726
  ensembl transcript: ENST00000422803
  gene symbol: AFTPH
  hgvsc: ENST00000422803.1:c.2215-11C>T
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000386913
  ensembl transcript: ENST00000409183
  gene symbol: AFTPH
  hgvsc: ENST00000409183.1:c.1108-11C>T
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000238855
  ensembl transcript: ENST00000238855
  gene symbol: AFTPH
  hgvsc: ENST00000238855.7:c.2215-11C>T
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl transcript: ENST00000498706
  gene symbol: AFTPH
  hgvsc: ENST00000498706.1:n.2333-11C>T
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000387071
  ensembl transcript: ENST00000409933
  gene symbol: AFTPH
  hgvsc: ENST00000409933.1:c.2215-11C>T
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl transcript: ENST00000487769
  gene symbol: AFTPH
  hgvsc: ENST00000487769.1:n.535-3334C>T
  variant of: http://identifiers.org/hgnc/25951
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9518
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5217
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3232
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3480
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7160
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1578
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3699
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9138
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1170
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 661
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2354
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 867
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11139
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5260
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2249
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4247
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3784
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff

2-64796746-CGT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64796746
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 64796744
    reference: chr 2
allele count: 1
allele frequency: 8.242664029014178e-6
allele num: 121320
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000397726
  ensembl transcript: ENST00000422803
  gene symbol: AFTPH
  hgvsc: ENST00000422803.1:c.2215-4_2215-3delGT
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000386913
  ensembl transcript: ENST00000409183
  gene symbol: AFTPH
  hgvsc: ENST00000409183.1:c.1108-4_1108-3delGT
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl transcript: ENST00000498706
  gene symbol: AFTPH
  hgvsc: ENST00000498706.1:n.2333-4_2333-3delGT
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000387071
  ensembl transcript: ENST00000409933
  gene symbol: AFTPH
  hgvsc: ENST00000409933.1:c.2215-4_2215-3delGT
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000238856
  ensembl transcript: ENST00000238856
  gene symbol: AFTPH
  hgvsc: ENST00000238856.4:c.2215-4_2215-3delGT
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000238855
  ensembl transcript: ENST00000238855
  gene symbol: AFTPH
  hgvsc: ENST00000238855.7:c.2215-4_2215-3delGT
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl transcript: ENST00000487769
  gene symbol: AFTPH
  hgvsc: ENST00000487769.1:n.535-3327_535-3326delGT
  variant of: http://identifiers.org/hgnc/25951
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3232
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9518
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3480
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7160
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 661
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5217
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 867
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1170
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2354
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11139
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9138
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3699
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1578
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3784
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2249
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10927
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
population: Latino
reference allele: CGT
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum

2-64796747-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64796747
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 64796747
    reference: chr 2
allele count: 77
allele frequency: 6.346537428086313e-4
allele num: 121326
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl transcript: ENST00000498706
  gene symbol: AFTPH
  hgvsc: ENST00000498706.1:n.2333-10G>A
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000238855
  ensembl transcript: ENST00000238855
  gene symbol: AFTPH
  hgvsc: ENST00000238855.7:c.2215-10G>A
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000387071
  ensembl transcript: ENST00000409933
  gene symbol: AFTPH
  hgvsc: ENST00000409933.1:c.2215-10G>A
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000238856
  ensembl transcript: ENST00000238856
  gene symbol: AFTPH
  hgvsc: ENST00000238856.4:c.2215-10G>A
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl transcript: ENST00000487769
  gene symbol: AFTPH
  hgvsc: ENST00000487769.1:n.535-3333G>A
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000386913
  ensembl transcript: ENST00000409183
  gene symbol: AFTPH
  hgvsc: ENST00000409183.1:c.1108-10G>A
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000397726
  ensembl transcript: ENST00000422803
  gene symbol: AFTPH
  hgvsc: ENST00000422803.1:c.2215-10G>A
  variant of: http://identifiers.org/hgnc/25951
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 8.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 9513
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5214
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 663
  bin: 7.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 8.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 11121
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1178
  bin: 6.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 2355
  bin: 5.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3481
  bin: 5.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 3235
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9125
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 872
  bin: 7.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 3721
  bin: 9.75e1
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 1579
  bin: 6.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7155
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 10935
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26990
  bin: 9.75e1
  variant carriers: 77
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
population: African
population: East Asian
reference allele: G
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP

2-64796747-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64796747
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 64796747
    reference: chr 2
allele count: 5
allele frequency: 4.121128200056047e-5
allele num: 121326
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000238855
  ensembl transcript: ENST00000238855
  gene symbol: AFTPH
  hgvsc: ENST00000238855.7:c.2215-10G>T
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000387071
  ensembl transcript: ENST00000409933
  gene symbol: AFTPH
  hgvsc: ENST00000409933.1:c.2215-10G>T
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000397726
  ensembl transcript: ENST00000422803
  gene symbol: AFTPH
  hgvsc: ENST00000422803.1:c.2215-10G>T
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl transcript: ENST00000487769
  gene symbol: AFTPH
  hgvsc: ENST00000487769.1:n.535-3333G>T
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl transcript: ENST00000498706
  gene symbol: AFTPH
  hgvsc: ENST00000498706.1:n.2333-10G>T
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000238856
  ensembl transcript: ENST00000238856
  gene symbol: AFTPH
  hgvsc: ENST00000238856.4:c.2215-10G>T
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000386913
  ensembl transcript: ENST00000409183
  gene symbol: AFTPH
  hgvsc: ENST00000409183.1:c.1108-10G>T
  variant of: http://identifiers.org/hgnc/25951
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11121
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9125
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3235
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1579
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9513
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 663
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1178
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5214
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3721
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 872
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2355
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3481
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7155
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5257
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10935
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4434
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3779
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4241
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
population: East Asian
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: DP

2-64796749-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64796749
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 64796749
    reference: chr 2
allele count: 2
allele frequency: 1.648451280022419e-5
allele num: 121326
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000386913
  ensembl transcript: ENST00000409183
  gene symbol: AFTPH
  hgvsc: ENST00000409183.1:c.1108-8G>A
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl transcript: ENST00000487769
  gene symbol: AFTPH
  hgvsc: ENST00000487769.1:n.535-3331G>A
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000387071
  ensembl transcript: ENST00000409933
  gene symbol: AFTPH
  hgvsc: ENST00000409933.1:c.2215-8G>A
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000397726
  ensembl transcript: ENST00000422803
  gene symbol: AFTPH
  hgvsc: ENST00000422803.1:c.2215-8G>A
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl transcript: ENST00000498706
  gene symbol: AFTPH
  hgvsc: ENST00000498706.1:n.2333-8G>A
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000238855
  ensembl transcript: ENST00000238855
  gene symbol: AFTPH
  hgvsc: ENST00000238855.7:c.2215-8G>A
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000238856
  ensembl transcript: ENST00000238856
  gene symbol: AFTPH
  hgvsc: ENST00000238856.4:c.2215-8G>A
  variant of: http://identifiers.org/hgnc/25951
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1582
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9140
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5217
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7165
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1172
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3478
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9519
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11130
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3241
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3700
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 659
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 539
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 867
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2353
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2247
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3783
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26956
  bin: 9.75e1
  variant carriers: 2
hgvs: c.2215-8G>A
num of homozygotes: 0
population: Other
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Latino
reference allele: G
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: QD

2-64796765-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64796765
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 64796765
    reference: chr 2
allele count: 1
allele frequency: 8.240490473993011e-6
allele num: 121352
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000238855
  ensembl transcript: ENST00000238855
  gene symbol: AFTPH
  hgvsc: ENST00000238855.7:c.2223G>A
  hgvsp: ENST00000238855.7:c.2223G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000397726
  ensembl transcript: ENST00000422803
  gene symbol: AFTPH
  hgvsc: ENST00000422803.1:c.2223G>A
  hgvsp: ENST00000422803.1:c.2223G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl transcript: ENST00000487769
  gene symbol: AFTPH
  hgvsc: ENST00000487769.1:n.535-3315G>A
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000386913
  ensembl transcript: ENST00000409183
  gene symbol: AFTPH
  hgvsc: ENST00000409183.1:c.1116G>A
  hgvsp: ENST00000409183.1:c.1116G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000238856
  ensembl transcript: ENST00000238856
  gene symbol: AFTPH
  hgvsc: ENST00000238856.4:c.2223G>A
  hgvsp: ENST00000238856.4:c.2223G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000387071
  ensembl transcript: ENST00000409933
  gene symbol: AFTPH
  hgvsc: ENST00000409933.1:c.2223G>A
  hgvsp: ENST00000409933.1:c.2223G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000119844
  ensembl transcript: ENST00000498706
  gene symbol: AFTPH
  hgvsc: ENST00000498706.1:n.2341G>A
  variant of: http://identifiers.org/hgnc/25951
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1582
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9139
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5216
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9521
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7164
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3701
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1172
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11137
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3477
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 659
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 867
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 539
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2354
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3250
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4436
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26955
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2247
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3781
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Thr741Thr
num of homozygotes: 0
population: South Asian
population: East Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
reference allele: G
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: ClippingRankSum

http://identifiers.org/exac.variant/2-64796775-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64796775
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 64796775
    reference: chr 2
allele count: 1
allele frequency: 8.239811473113496e-6
allele num: 121362
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000397726
  ensembl transcript: ENST00000422803
  gene symbol: AFTPH
  hgvsc: ENST00000422803.1:c.2233A>C
  hgvsp: ENSP00000397726.1:p.Lys745Gln
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000238856
  ensembl transcript: ENST00000238856
  gene symbol: AFTPH
  hgvsc: ENST00000238856.4:c.2233A>C
  hgvsp: ENSP00000238856.4:p.Lys745Gln
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000387071
  ensembl transcript: ENST00000409933
  gene symbol: AFTPH
  hgvsc: ENST00000409933.1:c.2233A>C
  hgvsp: ENSP00000387071.1:p.Lys745Gln
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000238855
  ensembl transcript: ENST00000238855
  gene symbol: AFTPH
  hgvsc: ENST00000238855.7:c.2233A>C
  hgvsp: ENSP00000238855.7:p.Lys745Gln
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl transcript: ENST00000487769
  gene symbol: AFTPH
  hgvsc: ENST00000487769.1:n.535-3305A>C
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000119844
  ensembl transcript: ENST00000498706
  gene symbol: AFTPH
  hgvsc: ENST00000498706.1:n.2351A>C
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000386913
  ensembl transcript: ENST00000409183
  gene symbol: AFTPH
  hgvsc: ENST00000409183.1:c.1126A>C
  hgvsp: ENSP00000386913.1:p.Lys376Gln
  variant of: http://identifiers.org/hgnc/25951
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 867
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1172
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3247
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 539
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1582
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9139
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9522
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11141
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7163
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2353
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3478
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 659
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5215
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3700
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10968
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26955
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Lys745Gln
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
reference allele: A
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum

2-64796788-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64796788
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 64796788
    reference: chr 2
allele count: 1
allele frequency: 8.239675686364985e-6
allele num: 121364
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl transcript: ENST00000487769
  gene symbol: AFTPH
  hgvsc: ENST00000487769.1:n.535-3292T>C
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000238855
  ensembl transcript: ENST00000238855
  gene symbol: AFTPH
  hgvsc: ENST00000238855.7:c.2246T>C
  hgvsp: ENSP00000238855.7:p.Ile749Thr
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000386913
  ensembl transcript: ENST00000409183
  gene symbol: AFTPH
  hgvsc: ENST00000409183.1:c.1139T>C
  hgvsp: ENSP00000386913.1:p.Ile380Thr
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000387071
  ensembl transcript: ENST00000409933
  gene symbol: AFTPH
  hgvsc: ENST00000409933.1:c.2246T>C
  hgvsp: ENSP00000387071.1:p.Ile749Thr
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000238856
  ensembl transcript: ENST00000238856
  gene symbol: AFTPH
  hgvsc: ENST00000238856.4:c.2246T>C
  hgvsp: ENSP00000238856.4:p.Ile749Thr
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000397726
  ensembl transcript: ENST00000422803
  gene symbol: AFTPH
  hgvsc: ENST00000422803.1:c.2246T>C
  hgvsp: ENSP00000397726.1:p.Ile749Thr
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000119844
  ensembl transcript: ENST00000498706
  gene symbol: AFTPH
  hgvsc: ENST00000498706.1:n.2364T>C
  variant of: http://identifiers.org/hgnc/25951
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1582
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3478
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9526
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2353
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7163
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9140
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 539
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1171
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11138
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3243
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3700
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5215
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 659
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 867
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4435
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5268
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Ile749Thr
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: African
population: Other
population: East Asian
reference allele: T
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP

2-64796796-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64796796
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 64796796
    reference: chr 2
allele count: 1
allele frequency: 8.239947264337508e-6
allele num: 121360
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000238855
  ensembl transcript: ENST00000238855
  gene symbol: AFTPH
  hgvsc: ENST00000238855.7:c.2254A>G
  hgvsp: ENSP00000238855.7:p.Met752Val
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000397726
  ensembl transcript: ENST00000422803
  gene symbol: AFTPH
  hgvsc: ENST00000422803.1:c.2254A>G
  hgvsp: ENSP00000397726.1:p.Met752Val
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000386913
  ensembl transcript: ENST00000409183
  gene symbol: AFTPH
  hgvsc: ENST00000409183.1:c.1147A>G
  hgvsp: ENSP00000386913.1:p.Met383Val
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000387071
  ensembl transcript: ENST00000409933
  gene symbol: AFTPH
  hgvsc: ENST00000409933.1:c.2254A>G
  hgvsp: ENSP00000387071.1:p.Met752Val
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000238856
  ensembl transcript: ENST00000238856
  gene symbol: AFTPH
  hgvsc: ENST00000238856.4:c.2254A>G
  hgvsp: ENSP00000238856.4:p.Met752Val
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl transcript: ENST00000487769
  gene symbol: AFTPH
  hgvsc: ENST00000487769.1:n.535-3284A>G
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000119844
  ensembl transcript: ENST00000498706
  gene symbol: AFTPH
  hgvsc: ENST00000498706.1:n.2372A>G
  variant of: http://identifiers.org/hgnc/25951
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9139
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1171
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5215
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3478
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1582
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2353
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3225
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11139
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9529
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7163
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3699
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 659
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 868
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2247
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26956
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 10958
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5266
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Met752Val
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: Other
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum

2-64796807-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64796807
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 64796807
    reference: chr 2
allele count: 4
allele frequency: 3.296522169111587e-5
allele num: 121340
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000397726
  ensembl transcript: ENST00000422803
  gene symbol: AFTPH
  hgvsc: ENST00000422803.1:c.2265A>G
  hgvsp: ENST00000422803.1:c.2265A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000238855
  ensembl transcript: ENST00000238855
  gene symbol: AFTPH
  hgvsc: ENST00000238855.7:c.2265A>G
  hgvsp: ENST00000238855.7:c.2265A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000238856
  ensembl transcript: ENST00000238856
  gene symbol: AFTPH
  hgvsc: ENST00000238856.4:c.2265A>G
  hgvsp: ENST00000238856.4:c.2265A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000387071
  ensembl transcript: ENST00000409933
  gene symbol: AFTPH
  hgvsc: ENST00000409933.1:c.2265A>G
  hgvsp: ENST00000409933.1:c.2265A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000386913
  ensembl transcript: ENST00000409183
  gene symbol: AFTPH
  hgvsc: ENST00000409183.1:c.1158A>G
  hgvsp: ENST00000409183.1:c.1158A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl transcript: ENST00000487769
  gene symbol: AFTPH
  hgvsc: ENST00000487769.1:n.535-3273A>G
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000119844
  ensembl transcript: ENST00000498706
  gene symbol: AFTPH
  hgvsc: ENST00000498706.1:n.2383A>G
  variant of: http://identifiers.org/hgnc/25951
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9138
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3479
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 659
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7162
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 868
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9525
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3188
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5214
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2353
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1171
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 539
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1582
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 11131
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3699
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4432
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2742
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10900
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4247
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Ala755Ala
num of homozygotes: 0
population: South Asian
population: Other
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
reference allele: A
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: QD

2-64796816-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64796816
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 64796816
    reference: chr 2
allele count: 53
allele frequency: 4.368755976128458e-4
allele num: 121316
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000387071
  ensembl transcript: ENST00000409933
  gene symbol: AFTPH
  hgvsc: ENST00000409933.1:c.2271+3A>G
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000397726
  ensembl transcript: ENST00000422803
  gene symbol: AFTPH
  hgvsc: ENST00000422803.1:c.2271+3A>G
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000238856
  ensembl transcript: ENST00000238856
  gene symbol: AFTPH
  hgvsc: ENST00000238856.4:c.2271+3A>G
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl transcript: ENST00000487769
  gene symbol: AFTPH
  hgvsc: ENST00000487769.1:n.535-3264A>G
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl transcript: ENST00000498706
  gene symbol: AFTPH
  hgvsc: ENST00000498706.1:n.2389+3A>G
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000386913
  ensembl transcript: ENST00000409183
  gene symbol: AFTPH
  hgvsc: ENST00000409183.1:c.1164+3A>G
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000238855
  ensembl transcript: ENST00000238855
  gene symbol: AFTPH
  hgvsc: ENST00000238855.7:c.2271+3A>G
  variant of: http://identifiers.org/hgnc/25951
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11122
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 539
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1171
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 9511
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3132
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2356
  bin: 5.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 5213
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3480
  bin: 5.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 657
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7159
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 9134
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3716
  bin: 9.75e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 8.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1581
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 870
  bin: 7.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26963
  bin: 9.75e1
  variant carriers: 53
genotype quality: GenotypeQuality
  all individuals: 10837
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2248
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3779
  bin: 9.25e1
  variant carriers: 0
hgvs: c.2271+3A>G
num of homozygotes: 0
population: Latino
population: Other
population: African
population: East Asian
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP

http://identifiers.org/exac.variant/2-64796817-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64796817
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 64796817
    reference: chr 2
allele count: 2190
allele frequency: 1.805202941079495e-2
allele num: 121316
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000238855
  ensembl transcript: ENST00000238855
  gene symbol: AFTPH
  hgvsc: ENST00000238855.7:c.2271+4A>C
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl transcript: ENST00000498706
  gene symbol: AFTPH
  hgvsc: ENST00000498706.1:n.2389+4A>C
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000238856
  ensembl transcript: ENST00000238856
  gene symbol: AFTPH
  hgvsc: ENST00000238856.4:c.2271+4A>C
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000387071
  ensembl transcript: ENST00000409933
  gene symbol: AFTPH
  hgvsc: ENST00000409933.1:c.2271+4A>C
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000386913
  ensembl transcript: ENST00000409183
  gene symbol: AFTPH
  hgvsc: ENST00000409183.1:c.1164+4A>C
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000397726
  ensembl transcript: ENST00000422803
  gene symbol: AFTPH
  hgvsc: ENST00000422803.1:c.2271+4A>C
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl transcript: ENST00000487769
  gene symbol: AFTPH
  hgvsc: ENST00000487769.1:n.535-3263A>C
  variant of: http://identifiers.org/hgnc/25951
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3375
  bin: 5.25e1
  variant carriers: 83
genotype depth: GenotypeDepth
  all individuals: 2333
  bin: 5.75e1
  variant carriers: 133
genotype depth: GenotypeDepth
  all individuals: 1594
  bin: 6.25e1
  variant carriers: 133
genotype depth: GenotypeDepth
  all individuals: 8933
  bin: 3.75e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5052
  bin: 4.75e1
  variant carriers: 67
genotype depth: GenotypeDepth
  all individuals: 745
  bin: 7.75e1
  variant carriers: 148
genotype depth: GenotypeDepth
  all individuals: 1231
  bin: 6.75e1
  variant carriers: 155
genotype depth: GenotypeDepth
  all individuals: 3078
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 635
  bin: 8.25e1
  variant carriers: 142
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 9.25e1
  variant carriers: 109
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6953
  bin: 4.25e1
  variant carriers: 40
genotype depth: GenotypeDepth
  all individuals: 10977
  bin: 3.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 936
  bin: 7.25e1
  variant carriers: 145
genotype depth: GenotypeDepth
  all individuals: 558
  bin: 8.75e1
  variant carriers: 124
genotype depth: GenotypeDepth
  all individuals: 4230
  bin: 9.75e1
  variant carriers: 741
genotype depth: GenotypeDepth
  all individuals: 9407
  bin: 2.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3709
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27311
  bin: 9.75e1
  variant carriers: 2059
hgvs: c.2271+4A>C
num of homozygotes: 130
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: African
population: East Asian
population: Latino
population: South Asian
reference allele: A
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum

2-64796826-ATC-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64796826
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 64796824
    reference: chr 2
allele count: 2
allele frequency: 1.648858989579211e-5
allele num: 121296
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl transcript: ENST00000498706
  gene symbol: AFTPH
  hgvsc: ENST00000498706.1:n.2389+19_2389+20delCT
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000238855
  ensembl transcript: ENST00000238855
  gene symbol: AFTPH
  hgvsc: ENST00000238855.7:c.2271+19_2271+20delCT
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000238856
  ensembl transcript: ENST00000238856
  gene symbol: AFTPH
  hgvsc: ENST00000238856.4:c.2271+19_2271+20delCT
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000386913
  ensembl transcript: ENST00000409183
  gene symbol: AFTPH
  hgvsc: ENST00000409183.1:c.1164+19_1164+20delCT
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000397726
  ensembl transcript: ENST00000422803
  gene symbol: AFTPH
  hgvsc: ENST00000422803.1:c.2271+19_2271+20delCT
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl transcript: ENST00000487769
  gene symbol: AFTPH
  hgvsc: ENST00000487769.1:n.535-3248_535-3247delCT
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000387071
  ensembl transcript: ENST00000409933
  gene symbol: AFTPH
  hgvsc: ENST00000409933.1:c.2271+19_2271+20delCT
  variant of: http://identifiers.org/hgnc/25951
canonical: true
consequence: intron
filter: VQSRTrancheINDEL95.00to96.00
genotype depth: GenotypeDepth
  all individuals: 3424
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5153
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 820
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3639
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 520
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9217
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2295
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1523
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11344
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1130
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9680
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7140
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2973
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3830
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 142
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5387
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: South Asian
population: Other
population: East Asian
population: African
population: European (Finnish)
reference allele: ATC
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum

2-64796827-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64796827
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 64796827
    reference: chr 2
allele count: 3
allele frequency: 2.473288484368817e-5
allele num: 121296
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl transcript: ENST00000487769
  gene symbol: AFTPH
  hgvsc: ENST00000487769.1:n.535-3253T>A
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000238856
  ensembl transcript: ENST00000238856
  gene symbol: AFTPH
  hgvsc: ENST00000238856.4:c.2271+14T>A
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000386913
  ensembl transcript: ENST00000409183
  gene symbol: AFTPH
  hgvsc: ENST00000409183.1:c.1164+14T>A
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000387071
  ensembl transcript: ENST00000409933
  gene symbol: AFTPH
  hgvsc: ENST00000409933.1:c.2271+14T>A
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000238855
  ensembl transcript: ENST00000238855
  gene symbol: AFTPH
  hgvsc: ENST00000238855.7:c.2271+14T>A
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl transcript: ENST00000498706
  gene symbol: AFTPH
  hgvsc: ENST00000498706.1:n.2389+14T>A
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000397726
  ensembl transcript: ENST00000422803
  gene symbol: AFTPH
  hgvsc: ENST00000422803.1:c.2271+14T>A
  variant of: http://identifiers.org/hgnc/25951
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9215
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5154
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 520
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11340
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3423
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2971
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 821
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9684
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1522
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2295
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3638
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1130
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7141
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5384
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11011
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3831
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: African
population: Other
reference allele: T
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum

http://identifiers.org/exac.variant/2-64796828-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64796828
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 64796828
    reference: chr 2
allele count: 3
allele frequency: 2.473614775725594e-5
allele num: 121280
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000238856
  ensembl transcript: ENST00000238856
  gene symbol: AFTPH
  hgvsc: ENST00000238856.4:c.2271+15C>A
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl transcript: ENST00000487769
  gene symbol: AFTPH
  hgvsc: ENST00000487769.1:n.535-3252C>A
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000397726
  ensembl transcript: ENST00000422803
  gene symbol: AFTPH
  hgvsc: ENST00000422803.1:c.2271+15C>A
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000387071
  ensembl transcript: ENST00000409933
  gene symbol: AFTPH
  hgvsc: ENST00000409933.1:c.2271+15C>A
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000238855
  ensembl transcript: ENST00000238855
  gene symbol: AFTPH
  hgvsc: ENST00000238855.7:c.2271+15C>A
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000386913
  ensembl transcript: ENST00000409183
  gene symbol: AFTPH
  hgvsc: ENST00000409183.1:c.1164+15C>A
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl transcript: ENST00000498706
  gene symbol: AFTPH
  hgvsc: ENST00000498706.1:n.2389+15C>A
  variant of: http://identifiers.org/hgnc/25951
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 627
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3422
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11347
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9673
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2967
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5154
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1521
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1132
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3638
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9216
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7145
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 821
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2295
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 520
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2786
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2278
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4525
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum

2-64796836-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64796836
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 64796836
    reference: chr 2
allele count: 1
allele frequency: 8.246062505153789e-6
allele num: 121270
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000238855
  ensembl transcript: ENST00000238855
  gene symbol: AFTPH
  hgvsc: ENST00000238855.7:c.2271+23A>T
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000238856
  ensembl transcript: ENST00000238856
  gene symbol: AFTPH
  hgvsc: ENST00000238856.4:c.2271+23A>T
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl transcript: ENST00000487769
  gene symbol: AFTPH
  hgvsc: ENST00000487769.1:n.535-3244A>T
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl transcript: ENST00000498706
  gene symbol: AFTPH
  hgvsc: ENST00000498706.1:n.2389+23A>T
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000387071
  ensembl transcript: ENST00000409933
  gene symbol: AFTPH
  hgvsc: ENST00000409933.1:c.2271+23A>T
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000386913
  ensembl transcript: ENST00000409183
  gene symbol: AFTPH
  hgvsc: ENST00000409183.1:c.1164+23A>T
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000397726
  ensembl transcript: ENST00000422803
  gene symbol: AFTPH
  hgvsc: ENST00000422803.1:c.2271+23A>T
  variant of: http://identifiers.org/hgnc/25951
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9537
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2293
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9206
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 520
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 821
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2878
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11269
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7136
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5153
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1129
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3638
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3425
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1520
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2279
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4296
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5322
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: South Asian
population: Other
reference allele: A
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum

2-64796844-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64796844
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 64796844
    reference: chr 2
allele count: 2
allele frequency: 1.649620587264929e-5
allele num: 121240
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000387071
  ensembl transcript: ENST00000409933
  gene symbol: AFTPH
  hgvsc: ENST00000409933.1:c.2271+31A>G
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000397726
  ensembl transcript: ENST00000422803
  gene symbol: AFTPH
  hgvsc: ENST00000422803.1:c.2271+31A>G
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000238856
  ensembl transcript: ENST00000238856
  gene symbol: AFTPH
  hgvsc: ENST00000238856.4:c.2271+31A>G
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000238855
  ensembl transcript: ENST00000238855
  gene symbol: AFTPH
  hgvsc: ENST00000238855.7:c.2271+31A>G
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000386913
  ensembl transcript: ENST00000409183
  gene symbol: AFTPH
  hgvsc: ENST00000409183.1:c.1164+31A>G
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl transcript: ENST00000487769
  gene symbol: AFTPH
  hgvsc: ENST00000487769.1:n.535-3236A>G
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl transcript: ENST00000498706
  gene symbol: AFTPH
  hgvsc: ENST00000498706.1:n.2389+31A>G
  variant of: http://identifiers.org/hgnc/25951
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1129
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 678
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 520
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5150
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11072
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7131
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2294
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3425
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3638
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9280
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9169
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2956
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 821
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1520
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 207
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 308
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 384
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9654
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4293
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5112
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 268
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2750
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
population: Other
population: European (Finnish)
population: South Asian
reference allele: A
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum

2-64796846-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64796846
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 64796846
    reference: chr 2
allele count: 18
allele frequency: 1.484927980992922e-4
allele num: 121218
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl transcript: ENST00000487769
  gene symbol: AFTPH
  hgvsc: ENST00000487769.1:n.535-3234C>T
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000238855
  ensembl transcript: ENST00000238855
  gene symbol: AFTPH
  hgvsc: ENST00000238855.7:c.2271+33C>T
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000397726
  ensembl transcript: ENST00000422803
  gene symbol: AFTPH
  hgvsc: ENST00000422803.1:c.2271+33C>T
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000386913
  ensembl transcript: ENST00000409183
  gene symbol: AFTPH
  hgvsc: ENST00000409183.1:c.1164+33C>T
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000387071
  ensembl transcript: ENST00000409933
  gene symbol: AFTPH
  hgvsc: ENST00000409933.1:c.2271+33C>T
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000238856
  ensembl transcript: ENST00000238856
  gene symbol: AFTPH
  hgvsc: ENST00000238856.4:c.2271+33C>T
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl transcript: ENST00000498706
  gene symbol: AFTPH
  hgvsc: ENST00000498706.1:n.2389+33C>T
  variant of: http://identifiers.org/hgnc/25951
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1522
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2294
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 894
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3425
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2879
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3639
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 11018
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5154
  bin: 4.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 821
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9166
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7128
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9152
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 519
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1130
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 506
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 648
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 290
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8859
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4479
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 445
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 375
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum

2-64796847-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64796847
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 64796847
    reference: chr 2
allele count: 42538
allele frequency: 3.517339463196018e-1
allele num: 120938
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000386913
  ensembl transcript: ENST00000409183
  gene symbol: AFTPH
  hgvsc: ENST00000409183.1:c.1164+34A>G
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000397726
  ensembl transcript: ENST00000422803
  gene symbol: AFTPH
  hgvsc: ENST00000422803.1:c.2271+34A>G
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl transcript: ENST00000498706
  gene symbol: AFTPH
  hgvsc: ENST00000498706.1:n.2389+34A>G
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000238856
  ensembl transcript: ENST00000238856
  gene symbol: AFTPH
  hgvsc: ENST00000238856.4:c.2271+34A>G
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000238855
  ensembl transcript: ENST00000238855
  gene symbol: AFTPH
  hgvsc: ENST00000238855.7:c.2271+34A>G
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl transcript: ENST00000487769
  gene symbol: AFTPH
  hgvsc: ENST00000487769.1:n.535-3233A>G
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000387071
  ensembl transcript: ENST00000409933
  gene symbol: AFTPH
  hgvsc: ENST00000409933.1:c.2271+34A>G
  variant of: http://identifiers.org/hgnc/25951
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7083
  bin: 4.25e1
  variant carriers: 4684
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 1.25e1
  variant carriers: 103
genotype depth: GenotypeDepth
  all individuals: 3045
  bin: 5.75e1
  variant carriers: 2463
genotype depth: GenotypeDepth
  all individuals: 7849
  bin: 2.75e1
  variant carriers: 2096
genotype depth: GenotypeDepth
  all individuals: 620
  bin: 8.25e1
  variant carriers: 444
genotype depth: GenotypeDepth
  all individuals: 945
  bin: 1.75e1
  variant carriers: 287
genotype depth: GenotypeDepth
  all individuals: 4373
  bin: 9.75e1
  variant carriers: 3202
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 9.25e1
  variant carriers: 322
genotype depth: GenotypeDepth
  all individuals: 5700
  bin: 4.75e1
  variant carriers: 4201
genotype depth: GenotypeDepth
  all individuals: 813
  bin: 7.75e1
  variant carriers: 616
genotype depth: GenotypeDepth
  all individuals: 1131
  bin: 7.25e1
  variant carriers: 897
genotype depth: GenotypeDepth
  all individuals: 8198
  bin: 3.75e1
  variant carriers: 4462
genotype depth: GenotypeDepth
  all individuals: 9446
  bin: 3.25e1
  variant carriers: 3487
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 7.5e0
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 2264
  bin: 2.25e1
  variant carriers: 908
genotype depth: GenotypeDepth
  all individuals: 2049
  bin: 6.25e1
  variant carriers: 1700
genotype depth: GenotypeDepth
  all individuals: 1554
  bin: 6.75e1
  variant carriers: 1248
genotype depth: GenotypeDepth
  all individuals: 4164
  bin: 5.25e1
  variant carriers: 3236
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 8.75e1
  variant carriers: 373
genotype quality: GenotypeQuality
  all individuals: 193
  bin: 2.75e1
  variant carriers: 21
genotype quality: GenotypeQuality
  all individuals: 40211
  bin: 9.75e1
  variant carriers: 33214
genotype quality: GenotypeQuality
  all individuals: 324
  bin: 3.75e1
  variant carriers: 42
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 2.5e0
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 3077
  bin: 6.75e1
  variant carriers: 125
genotype quality: GenotypeQuality
  all individuals: 2205
  bin: 7.75e1
  variant carriers: 151
genotype quality: GenotypeQuality
  all individuals: 203
  bin: 4.25e1
  variant carriers: 45
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 7.5e0
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 1013
  bin: 8.75e1
  variant carriers: 161
genotype quality: GenotypeQuality
  all individuals: 6865
  bin: 6.25e1
  variant carriers: 105
num of homozygotes: 7855
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
population: Other
population: European (Finnish)
population: South Asian
reference allele: A
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: InbreedingCoeff

2-64796862-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64796862
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 64796862
    reference: chr 2
allele count: 1
allele frequency: 8.271298593879239e-6
allele num: 120900
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl transcript: ENST00000487769
  gene symbol: AFTPH
  hgvsc: ENST00000487769.1:n.535-3218C>G
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000238856
  ensembl transcript: ENST00000238856
  gene symbol: AFTPH
  hgvsc: ENST00000238856.4:c.2271+49C>G
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000238855
  ensembl transcript: ENST00000238855
  gene symbol: AFTPH
  hgvsc: ENST00000238855.7:c.2271+49C>G
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl transcript: ENST00000498706
  gene symbol: AFTPH
  hgvsc: ENST00000498706.1:n.2389+49C>G
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000386913
  ensembl transcript: ENST00000409183
  gene symbol: AFTPH
  hgvsc: ENST00000409183.1:c.1164+49C>G
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000397726
  ensembl transcript: ENST00000422803
  gene symbol: AFTPH
  hgvsc: ENST00000422803.1:c.2271+49C>G
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000387071
  ensembl transcript: ENST00000409933
  gene symbol: AFTPH
  hgvsc: ENST00000409933.1:c.2271+49C>G
  variant of: http://identifiers.org/hgnc/25951
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 584
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 876
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2247
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1479
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8278
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3588
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6799
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3430
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5432
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10882
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10447
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 967
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3166
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 750
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2865
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2099
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9592
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1977
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 537
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1286
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum

2-64800036-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64800036
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 64800036
    reference: chr 2
allele count: 35
allele frequency: 2.901626568950938e-4
allele num: 120622
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000238855
  ensembl transcript: ENST00000238855
  gene symbol: AFTPH
  hgvsc: ENST00000238855.7:c.2272-44C>T
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000387071
  ensembl transcript: ENST00000409933
  gene symbol: AFTPH
  hgvsc: ENST00000409933.1:c.2272-44C>T
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000386913
  ensembl transcript: ENST00000409183
  gene symbol: AFTPH
  hgvsc: ENST00000409183.1:c.1165-44C>T
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl transcript: ENST00000487769
  gene symbol: AFTPH
  hgvsc: ENST00000487769.1:n.535-44C>T
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000397726
  ensembl transcript: ENST00000422803
  gene symbol: AFTPH
  hgvsc: ENST00000422803.1:c.2272-44C>T
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000238856
  ensembl transcript: ENST00000238856
  gene symbol: AFTPH
  hgvsc: ENST00000238856.4:c.2272-44C>T
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl transcript: ENST00000498706
  gene symbol: AFTPH
  hgvsc: ENST00000498706.1:n.2390-44C>T
  variant of: http://identifiers.org/hgnc/25951
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6651
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3128
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 647
  bin: 9.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6299
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1376
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6354
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5607
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3137
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 985
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4446
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 6905
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1761
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4993
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2383
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1402
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2505
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 758
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1057
  bin: 8.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1742
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3234
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6812
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 297
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4111
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32950
  bin: 9.75e1
  variant carriers: 35
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 502
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Other
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
reference allele: C
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum

2-64800043-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64800043
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 64800043
    reference: chr 2
allele count: 1
allele frequency: 8.281710670156027e-6
allele num: 120748
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl transcript: ENST00000487769
  gene symbol: AFTPH
  hgvsc: ENST00000487769.1:n.535-37C>T
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000238856
  ensembl transcript: ENST00000238856
  gene symbol: AFTPH
  hgvsc: ENST00000238856.4:c.2272-37C>T
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000397726
  ensembl transcript: ENST00000422803
  gene symbol: AFTPH
  hgvsc: ENST00000422803.1:c.2272-37C>T
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000238855
  ensembl transcript: ENST00000238855
  gene symbol: AFTPH
  hgvsc: ENST00000238855.7:c.2272-37C>T
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000387071
  ensembl transcript: ENST00000409933
  gene symbol: AFTPH
  hgvsc: ENST00000409933.1:c.2272-37C>T
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000386913
  ensembl transcript: ENST00000409183
  gene symbol: AFTPH
  hgvsc: ENST00000409183.1:c.1165-37C>T
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl transcript: ENST00000498706
  gene symbol: AFTPH
  hgvsc: ENST00000498706.1:n.2390-37C>T
  variant of: http://identifiers.org/hgnc/25951
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 618
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 645
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1400
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6431
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6650
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2502
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1057
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2382
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3825
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6909
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 742
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5259
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3129
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6300
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5609
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1760
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 757
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4447
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 215
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 180
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1898
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 372
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 371
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3375
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 194
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4237
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: VQSLOD

http://identifiers.org/exac.variant/2-64800048-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64800048
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 64800048
    reference: chr 2
allele count: 1
allele frequency: 8.272940865018697e-6
allele num: 120876
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl transcript: ENST00000487769
  gene symbol: AFTPH
  hgvsc: ENST00000487769.1:n.535-32A>C
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000238856
  ensembl transcript: ENST00000238856
  gene symbol: AFTPH
  hgvsc: ENST00000238856.4:c.2272-32A>C
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl transcript: ENST00000498706
  gene symbol: AFTPH
  hgvsc: ENST00000498706.1:n.2390-32A>C
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000386913
  ensembl transcript: ENST00000409183
  gene symbol: AFTPH
  hgvsc: ENST00000409183.1:c.1165-32A>C
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000238855
  ensembl transcript: ENST00000238855
  gene symbol: AFTPH
  hgvsc: ENST00000238855.7:c.2272-32A>C
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000387071
  ensembl transcript: ENST00000409933
  gene symbol: AFTPH
  hgvsc: ENST00000409933.1:c.2272-32A>C
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000397726
  ensembl transcript: ENST00000422803
  gene symbol: AFTPH
  hgvsc: ENST00000422803.1:c.2272-32A>C
  variant of: http://identifiers.org/hgnc/25951
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5609
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5464
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1761
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1057
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4043
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1400
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6478
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2381
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3129
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6652
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6304
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2502
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6907
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 757
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4446
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 645
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 258
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 341
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32935
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 237
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8439
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 155
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
reference allele: A
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum

2-64800048-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64800048
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 64800048
    reference: chr 2
allele count: 1
allele frequency: 8.272940865018697e-6
allele num: 120876
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000238856
  ensembl transcript: ENST00000238856
  gene symbol: AFTPH
  hgvsc: ENST00000238856.4:c.2272-32A>G
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000397726
  ensembl transcript: ENST00000422803
  gene symbol: AFTPH
  hgvsc: ENST00000422803.1:c.2272-32A>G
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000238855
  ensembl transcript: ENST00000238855
  gene symbol: AFTPH
  hgvsc: ENST00000238855.7:c.2272-32A>G
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000387071
  ensembl transcript: ENST00000409933
  gene symbol: AFTPH
  hgvsc: ENST00000409933.1:c.2272-32A>G
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl transcript: ENST00000487769
  gene symbol: AFTPH
  hgvsc: ENST00000487769.1:n.535-32A>G
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl transcript: ENST00000498706
  gene symbol: AFTPH
  hgvsc: ENST00000498706.1:n.2390-32A>G
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000386913
  ensembl transcript: ENST00000409183
  gene symbol: AFTPH
  hgvsc: ENST00000409183.1:c.1165-32A>G
  variant of: http://identifiers.org/hgnc/25951
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4043
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1057
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4446
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6478
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1400
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3129
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 645
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5464
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6907
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6652
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2381
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1761
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6304
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 757
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2502
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5609
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8439
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 237
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 258
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 155
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: Other
population: East Asian
population: African
population: South Asian
population: European (Finnish)
reference allele: A
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: QD

2-64800051-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64800051
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 64800051
    reference: chr 2
allele count: 1
allele frequency: 8.271572260455268e-6
allele num: 120896
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000238856
  ensembl transcript: ENST00000238856
  gene symbol: AFTPH
  hgvsc: ENST00000238856.4:c.2272-29C>T
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000397726
  ensembl transcript: ENST00000422803
  gene symbol: AFTPH
  hgvsc: ENST00000422803.1:c.2272-29C>T
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000387071
  ensembl transcript: ENST00000409933
  gene symbol: AFTPH
  hgvsc: ENST00000409933.1:c.2272-29C>T
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000386913
  ensembl transcript: ENST00000409183
  gene symbol: AFTPH
  hgvsc: ENST00000409183.1:c.1165-29C>T
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl transcript: ENST00000487769
  gene symbol: AFTPH
  hgvsc: ENST00000487769.1:n.535-29C>T
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000238855
  ensembl transcript: ENST00000238855
  gene symbol: AFTPH
  hgvsc: ENST00000238855.7:c.2272-29C>T
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl transcript: ENST00000498706
  gene symbol: AFTPH
  hgvsc: ENST00000498706.1:n.2390-29C>T
  variant of: http://identifiers.org/hgnc/25951
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 757
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6912
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4120
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5552
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1760
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6309
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4446
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3129
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6527
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6652
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1400
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2503
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1057
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2381
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5610
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 644
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1751
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4318
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 206
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8638
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: East Asian
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum

2-64800058-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64800058
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 64800058
    reference: chr 2
allele count: 1
allele frequency: 8.263370132874991e-6
allele num: 121016
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000387071
  ensembl transcript: ENST00000409933
  gene symbol: AFTPH
  hgvsc: ENST00000409933.1:c.2272-22A>G
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000238856
  ensembl transcript: ENST00000238856
  gene symbol: AFTPH
  hgvsc: ENST00000238856.4:c.2272-22A>G
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl transcript: ENST00000487769
  gene symbol: AFTPH
  hgvsc: ENST00000487769.1:n.535-22A>G
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000397726
  ensembl transcript: ENST00000422803
  gene symbol: AFTPH
  hgvsc: ENST00000422803.1:c.2272-22A>G
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000386913
  ensembl transcript: ENST00000409183
  gene symbol: AFTPH
  hgvsc: ENST00000409183.1:c.1165-22A>G
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000238855
  ensembl transcript: ENST00000238855
  gene symbol: AFTPH
  hgvsc: ENST00000238855.7:c.2272-22A>G
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl transcript: ENST00000498706
  gene symbol: AFTPH
  hgvsc: ENST00000498706.1:n.2390-22A>G
  variant of: http://identifiers.org/hgnc/25951
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4446
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6551
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3129
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5734
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6912
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1760
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6308
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2502
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6653
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1400
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4325
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 757
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2381
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 644
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5610
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1058
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 220
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9099
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
population: African
reference allele: A
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum

2-64800063-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64800063
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 64800063
    reference: chr 2
allele count: 2
allele frequency: 1.651173158529135e-5
allele num: 121126
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000397726
  ensembl transcript: ENST00000422803
  gene symbol: AFTPH
  hgvsc: ENST00000422803.1:c.2272-17T>A
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000387071
  ensembl transcript: ENST00000409933
  gene symbol: AFTPH
  hgvsc: ENST00000409933.1:c.2272-17T>A
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000386913
  ensembl transcript: ENST00000409183
  gene symbol: AFTPH
  hgvsc: ENST00000409183.1:c.1165-17T>A
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000238855
  ensembl transcript: ENST00000238855
  gene symbol: AFTPH
  hgvsc: ENST00000238855.7:c.2272-17T>A
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl transcript: ENST00000487769
  gene symbol: AFTPH
  hgvsc: ENST00000487769.1:n.535-17T>A
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000238856
  ensembl transcript: ENST00000238856
  gene symbol: AFTPH
  hgvsc: ENST00000238856.4:c.2272-17T>A
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl transcript: ENST00000498706
  gene symbol: AFTPH
  hgvsc: ENST00000498706.1:n.2390-17T>A
  variant of: http://identifiers.org/hgnc/25951
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1058
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1760
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4430
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2381
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6911
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6312
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1400
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4447
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6653
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5836
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6576
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2502
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 758
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3129
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 644
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5609
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3256
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1922
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: Other
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: MQ
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum

2-64800064-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64800064
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 64800064
    reference: chr 2
allele count: 1
allele frequency: 8.255184255712587e-6
allele num: 121136
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000387071
  ensembl transcript: ENST00000409933
  gene symbol: AFTPH
  hgvsc: ENST00000409933.1:c.2272-16A>G
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000386913
  ensembl transcript: ENST00000409183
  gene symbol: AFTPH
  hgvsc: ENST00000409183.1:c.1165-16A>G
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000238856
  ensembl transcript: ENST00000238856
  gene symbol: AFTPH
  hgvsc: ENST00000238856.4:c.2272-16A>G
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000238855
  ensembl transcript: ENST00000238855
  gene symbol: AFTPH
  hgvsc: ENST00000238855.7:c.2272-16A>G
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl transcript: ENST00000487769
  gene symbol: AFTPH
  hgvsc: ENST00000487769.1:n.535-16A>G
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl transcript: ENST00000498706
  gene symbol: AFTPH
  hgvsc: ENST00000498706.1:n.2390-16A>G
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000397726
  ensembl transcript: ENST00000422803
  gene symbol: AFTPH
  hgvsc: ENST00000422803.1:c.2272-16A>G
  variant of: http://identifiers.org/hgnc/25951
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2502
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 644
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6581
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4447
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2381
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5844
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3128
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1058
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1761
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 757
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6652
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5608
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6313
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1400
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6911
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3399
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32937
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1750
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3309
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9348
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: African
population: East Asian
reference allele: A
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum

2-64800066-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64800066
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 64800066
    reference: chr 2
allele count: 1436
allele frequency: 1.18497491418009e-2
allele num: 121184
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl transcript: ENST00000487769
  gene symbol: AFTPH
  hgvsc: ENST00000487769.1:n.535-14T>C
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl transcript: ENST00000498706
  gene symbol: AFTPH
  hgvsc: ENST00000498706.1:n.2390-14T>C
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000386913
  ensembl transcript: ENST00000409183
  gene symbol: AFTPH
  hgvsc: ENST00000409183.1:c.1165-14T>C
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000387071
  ensembl transcript: ENST00000409933
  gene symbol: AFTPH
  hgvsc: ENST00000409933.1:c.2272-14T>C
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000238856
  ensembl transcript: ENST00000238856
  gene symbol: AFTPH
  hgvsc: ENST00000238856.4:c.2272-14T>C
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000238855
  ensembl transcript: ENST00000238855
  gene symbol: AFTPH
  hgvsc: ENST00000238855.7:c.2272-14T>C
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000397726
  ensembl transcript: ENST00000422803
  gene symbol: AFTPH
  hgvsc: ENST00000422803.1:c.2272-14T>C
  variant of: http://identifiers.org/hgnc/25951
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6574
  bin: 4.75e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 4399
  bin: 2.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 800
  bin: 8.75e1
  variant carriers: 78
genotype depth: GenotypeDepth
  all individuals: 1731
  bin: 7.25e1
  variant carriers: 45
genotype depth: GenotypeDepth
  all individuals: 2279
  bin: 6.75e1
  variant carriers: 33
genotype depth: GenotypeDepth
  all individuals: 5494
  bin: 5.25e1
  variant carriers: 35
genotype depth: GenotypeDepth
  all individuals: 5822
  bin: 2.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3233
  bin: 9.75e1
  variant carriers: 871
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 9.25e1
  variant carriers: 81
genotype depth: GenotypeDepth
  all individuals: 6265
  bin: 3.75e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 4338
  bin: 5.75e1
  variant carriers: 31
genotype depth: GenotypeDepth
  all individuals: 6539
  bin: 3.25e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 6839
  bin: 4.25e1
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3035
  bin: 6.25e1
  variant carriers: 31
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1379
  bin: 7.75e1
  variant carriers: 45
genotype depth: GenotypeDepth
  all individuals: 1064
  bin: 8.25e1
  variant carriers: 56
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33170
  bin: 9.75e1
  variant carriers: 1415
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3372
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 21
population: Latino
population: European (Finnish)
population: Other
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: T
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: QD
site quality: InbreedingCoeff

2-64800070-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64800070
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 64800070
    reference: chr 2
allele count: 1
allele frequency: 8.248919391559706e-6
allele num: 121228
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000238856
  ensembl transcript: ENST00000238856
  gene symbol: AFTPH
  hgvsc: ENST00000238856.4:c.2272-10C>G
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl transcript: ENST00000498706
  gene symbol: AFTPH
  hgvsc: ENST00000498706.1:n.2390-10C>G
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000397726
  ensembl transcript: ENST00000422803
  gene symbol: AFTPH
  hgvsc: ENST00000422803.1:c.2272-10C>G
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl transcript: ENST00000487769
  gene symbol: AFTPH
  hgvsc: ENST00000487769.1:n.535-10C>G
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000386913
  ensembl transcript: ENST00000409183
  gene symbol: AFTPH
  hgvsc: ENST00000409183.1:c.1165-10C>G
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000387071
  ensembl transcript: ENST00000409933
  gene symbol: AFTPH
  hgvsc: ENST00000409933.1:c.2272-10C>G
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000238855
  ensembl transcript: ENST00000238855
  gene symbol: AFTPH
  hgvsc: ENST00000238855.7:c.2272-10C>G
  variant of: http://identifiers.org/hgnc/25951
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5605
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5967
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4409
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2298
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1367
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4436
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6727
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3087
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 630
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6697
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6979
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 742
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1730
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2438
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6395
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1037
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1950
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9544
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1787
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3299
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
population: African
reference allele: C
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum

2-64800071-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64800071
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 64800071
    reference: chr 2
allele count: 1
allele frequency: 8.248919391559706e-6
allele num: 121228
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000397726
  ensembl transcript: ENST00000422803
  gene symbol: AFTPH
  hgvsc: ENST00000422803.1:c.2272-9C>G
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000238855
  ensembl transcript: ENST00000238855
  gene symbol: AFTPH
  hgvsc: ENST00000238855.7:c.2272-9C>G
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000238856
  ensembl transcript: ENST00000238856
  gene symbol: AFTPH
  hgvsc: ENST00000238856.4:c.2272-9C>G
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl transcript: ENST00000498706
  gene symbol: AFTPH
  hgvsc: ENST00000498706.1:n.2390-9C>G
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000387071
  ensembl transcript: ENST00000409933
  gene symbol: AFTPH
  hgvsc: ENST00000409933.1:c.2272-9C>G
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000386913
  ensembl transcript: ENST00000409183
  gene symbol: AFTPH
  hgvsc: ENST00000409183.1:c.1165-9C>G
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl transcript: ENST00000487769
  gene symbol: AFTPH
  hgvsc: ENST00000487769.1:n.535-9C>G
  variant of: http://identifiers.org/hgnc/25951
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3088
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5605
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 742
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6397
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6705
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2298
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5981
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6728
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6980
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1367
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4410
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 630
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2437
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1037
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4415
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1730
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1790
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3301
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1947
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3371
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
population: Other
population: South Asian
population: European (Finnish)
reference allele: C
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD

2-64800091-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64800091
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 64800091
    reference: chr 2
allele count: 1
allele frequency: 8.240083060037246e-6
allele num: 121358
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000238856
  ensembl transcript: ENST00000238856
  gene symbol: AFTPH
  hgvsc: ENST00000238856.4:c.2283G>A
  hgvsp: ENST00000238856.4:c.2283G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000386913
  ensembl transcript: ENST00000409183
  gene symbol: AFTPH
  hgvsc: ENST00000409183.1:c.1176G>A
  hgvsp: ENST00000409183.1:c.1176G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000119844
  ensembl transcript: ENST00000487769
  gene symbol: AFTPH
  hgvsc: ENST00000487769.1:n.546G>A
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000387071
  ensembl transcript: ENST00000409933
  gene symbol: AFTPH
  hgvsc: ENST00000409933.1:c.2283G>A
  hgvsp: ENST00000409933.1:c.2283G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000238855
  ensembl transcript: ENST00000238855
  gene symbol: AFTPH
  hgvsc: ENST00000238855.7:c.2283G>A
  hgvsp: ENST00000238855.7:c.2283G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000119844
  ensembl transcript: ENST00000498706
  gene symbol: AFTPH
  hgvsc: ENST00000498706.1:n.2401G>A
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000397726
  ensembl transcript: ENST00000422803
  gene symbol: AFTPH
  hgvsc: ENST00000422803.1:c.2283G>A
  hgvsp: ENST00000422803.1:c.2283G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25951
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6716
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6397
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1037
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5604
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6728
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1367
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 742
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6980
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4442
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4410
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2438
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6060
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2298
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1730
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 629
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3087
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3456
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Glu761Glu
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
population: East Asian
population: Other
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD

2-64800097-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64800097
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 64800097
    reference: chr 2
allele count: 1
allele frequency: 8.2387253044209e-6
allele num: 121378
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000386913
  ensembl transcript: ENST00000409183
  gene symbol: AFTPH
  hgvsc: ENST00000409183.1:c.1182C>G
  hgvsp: ENST00000409183.1:c.1182C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000119844
  ensembl transcript: ENST00000487769
  gene symbol: AFTPH
  hgvsc: ENST00000487769.1:n.552C>G
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000387071
  ensembl transcript: ENST00000409933
  gene symbol: AFTPH
  hgvsc: ENST00000409933.1:c.2289C>G
  hgvsp: ENST00000409933.1:c.2289C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000397726
  ensembl transcript: ENST00000422803
  gene symbol: AFTPH
  hgvsc: ENST00000422803.1:c.2289C>G
  hgvsp: ENST00000422803.1:c.2289C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000238855
  ensembl transcript: ENST00000238855
  gene symbol: AFTPH
  hgvsc: ENST00000238855.7:c.2289C>G
  hgvsp: ENST00000238855.7:c.2289C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000238856
  ensembl transcript: ENST00000238856
  gene symbol: AFTPH
  hgvsc: ENST00000238856.4:c.2289C>G
  hgvsp: ENST00000238856.4:c.2289C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000119844
  ensembl transcript: ENST00000498706
  gene symbol: AFTPH
  hgvsc: ENST00000498706.1:n.2407C>G
  variant of: http://identifiers.org/hgnc/25951
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1037
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6394
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3087
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6731
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 742
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1730
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 629
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6980
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5604
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2298
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6076
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2438
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1367
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6717
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4410
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4432
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32571
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1788
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Thr763Thr
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: C
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: QD

http://identifiers.org/exac.variant/2-64800098-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64800098
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 64800098
    reference: chr 2
allele count: 1
allele frequency: 8.238453806989504e-6
allele num: 121382
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000238855
  ensembl transcript: ENST00000238855
  gene symbol: AFTPH
  hgvsc: ENST00000238855.7:c.2290A>C
  hgvsp: ENSP00000238855.7:p.Lys764Gln
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000119844
  ensembl transcript: ENST00000498706
  gene symbol: AFTPH
  hgvsc: ENST00000498706.1:n.2408A>C
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000386913
  ensembl transcript: ENST00000409183
  gene symbol: AFTPH
  hgvsc: ENST00000409183.1:c.1183A>C
  hgvsp: ENSP00000386913.1:p.Lys395Gln
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000238856
  ensembl transcript: ENST00000238856
  gene symbol: AFTPH
  hgvsc: ENST00000238856.4:c.2290A>C
  hgvsp: ENSP00000238856.4:p.Lys764Gln
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000387071
  ensembl transcript: ENST00000409933
  gene symbol: AFTPH
  hgvsc: ENST00000409933.1:c.2290A>C
  hgvsp: ENSP00000387071.1:p.Lys764Gln
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000397726
  ensembl transcript: ENST00000422803
  gene symbol: AFTPH
  hgvsc: ENST00000422803.1:c.2290A>C
  hgvsp: ENSP00000397726.1:p.Lys764Gln
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000119844
  ensembl transcript: ENST00000487769
  gene symbol: AFTPH
  hgvsc: ENST00000487769.1:n.553A>C
  variant of: http://identifiers.org/hgnc/25951
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1730
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 742
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6730
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 629
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1037
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6978
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6394
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6719
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2297
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6079
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4435
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4410
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3087
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1367
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2438
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5604
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3370
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32570
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3456
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3301
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Lys764Gln
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: South Asian
population: African
reference allele: A
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum

2-64800109-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64800109
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 64800109
    reference: chr 2
allele count: 1
allele frequency: 8.237775141689733e-6
allele num: 121392
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000238856
  ensembl transcript: ENST00000238856
  gene symbol: AFTPH
  hgvsc: ENST00000238856.4:c.2301G>A
  hgvsp: ENST00000238856.4:c.2301G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000386913
  ensembl transcript: ENST00000409183
  gene symbol: AFTPH
  hgvsc: ENST00000409183.1:c.1194G>A
  hgvsp: ENST00000409183.1:c.1194G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000238855
  ensembl transcript: ENST00000238855
  gene symbol: AFTPH
  hgvsc: ENST00000238855.7:c.2301G>A
  hgvsp: ENST00000238855.7:c.2301G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000119844
  ensembl transcript: ENST00000487769
  gene symbol: AFTPH
  hgvsc: ENST00000487769.1:n.564G>A
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000397726
  ensembl transcript: ENST00000422803
  gene symbol: AFTPH
  hgvsc: ENST00000422803.1:c.2301G>A
  hgvsp: ENST00000422803.1:c.2301G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000387071
  ensembl transcript: ENST00000409933
  gene symbol: AFTPH
  hgvsc: ENST00000409933.1:c.2301G>A
  hgvsp: ENST00000409933.1:c.2301G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000119844
  ensembl transcript: ENST00000498706
  gene symbol: AFTPH
  hgvsc: ENST00000498706.1:n.2419G>A
  variant of: http://identifiers.org/hgnc/25951
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6079
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1037
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2297
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6978
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4438
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5605
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1367
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6730
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6395
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4410
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 742
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2437
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3088
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6723
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1730
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 629
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4524
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Leu767Leu
num of homozygotes: 0
population: Latino
population: South Asian
population: Other
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: QD

2-64800140-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64800140
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 64800140
    reference: chr 2
allele count: 1
allele frequency: 8.236960890909689e-6
allele num: 121404
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000119844
  ensembl transcript: ENST00000487769
  gene symbol: AFTPH
  hgvsc: ENST00000487769.1:n.595T>A
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000238855
  ensembl transcript: ENST00000238855
  gene symbol: AFTPH
  hgvsc: ENST00000238855.7:c.2332T>A
  hgvsp: ENSP00000238855.7:p.Ser778Thr
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000238856
  ensembl transcript: ENST00000238856
  gene symbol: AFTPH
  hgvsc: ENST00000238856.4:c.2332T>A
  hgvsp: ENSP00000238856.4:p.Ser778Thr
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000387071
  ensembl transcript: ENST00000409933
  gene symbol: AFTPH
  hgvsc: ENST00000409933.1:c.2332T>A
  hgvsp: ENSP00000387071.1:p.Ser778Thr
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000386913
  ensembl transcript: ENST00000409183
  gene symbol: AFTPH
  hgvsc: ENST00000409183.1:c.1225T>A
  hgvsp: ENSP00000386913.1:p.Ser409Thr
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000119844
  ensembl transcript: ENST00000498706
  gene symbol: AFTPH
  hgvsc: ENST00000498706.1:n.2450T>A
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000397726
  ensembl transcript: ENST00000422803
  gene symbol: AFTPH
  hgvsc: ENST00000422803.1:c.2332T>A
  hgvsp: ENSP00000397726.1:p.Ser778Thr
  variant of: http://identifiers.org/hgnc/25951
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5605
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6395
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6731
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6977
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2297
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1730
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1037
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 742
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4411
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1367
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3087
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4444
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2437
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6084
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6722
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 629
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3301
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1789
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Ser778Thr
num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: T
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: QD

2-64800145-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64800145
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 64800145
    reference: chr 2
allele count: 3
allele frequency: 2.471088267272907e-5
allele num: 121404
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000238855
  ensembl transcript: ENST00000238855
  gene symbol: AFTPH
  hgvsc: ENST00000238855.7:c.2337C>T
  hgvsp: ENST00000238855.7:c.2337C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000386913
  ensembl transcript: ENST00000409183
  gene symbol: AFTPH
  hgvsc: ENST00000409183.1:c.1230C>T
  hgvsp: ENST00000409183.1:c.1230C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000397726
  ensembl transcript: ENST00000422803
  gene symbol: AFTPH
  hgvsc: ENST00000422803.1:c.2337C>T
  hgvsp: ENST00000422803.1:c.2337C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000119844
  ensembl transcript: ENST00000498706
  gene symbol: AFTPH
  hgvsc: ENST00000498706.1:n.2455C>T
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000387071
  ensembl transcript: ENST00000409933
  gene symbol: AFTPH
  hgvsc: ENST00000409933.1:c.2337C>T
  hgvsp: ENST00000409933.1:c.2337C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000119844
  ensembl transcript: ENST00000487769
  gene symbol: AFTPH
  hgvsc: ENST00000487769.1:n.600C>T
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000238856
  ensembl transcript: ENST00000238856
  gene symbol: AFTPH
  hgvsc: ENST00000238856.4:c.2337C>T
  hgvsp: ENST00000238856.4:c.2337C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25951
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6396
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6085
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1037
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4410
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6722
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6730
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3086
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5604
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1367
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 629
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6977
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 742
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1730
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2297
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2440
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4442
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3301
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3371
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9724
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Ile779Ile
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: South Asian
population: African
population: East Asian
population: Latino
reference allele: C
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum

2-64800146-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64800146
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 64800146
    reference: chr 2
allele count: 1
allele frequency: 8.237096588194593e-6
allele num: 121402
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000238856
  ensembl transcript: ENST00000238856
  gene symbol: AFTPH
  hgvsc: ENST00000238856.4:c.2338G>A
  hgvsp: ENSP00000238856.4:p.Gly780Ser
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000386913
  ensembl transcript: ENST00000409183
  gene symbol: AFTPH
  hgvsc: ENST00000409183.1:c.1231G>A
  hgvsp: ENSP00000386913.1:p.Gly411Ser
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000119844
  ensembl transcript: ENST00000498706
  gene symbol: AFTPH
  hgvsc: ENST00000498706.1:n.2456G>A
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000238855
  ensembl transcript: ENST00000238855
  gene symbol: AFTPH
  hgvsc: ENST00000238855.7:c.2338G>A
  hgvsp: ENSP00000238855.7:p.Gly780Ser
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000397726
  ensembl transcript: ENST00000422803
  gene symbol: AFTPH
  hgvsc: ENST00000422803.1:c.2338G>A
  hgvsp: ENSP00000397726.1:p.Gly780Ser
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000119844
  ensembl transcript: ENST00000487769
  gene symbol: AFTPH
  hgvsc: ENST00000487769.1:n.601G>A
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000387071
  ensembl transcript: ENST00000409933
  gene symbol: AFTPH
  hgvsc: ENST00000409933.1:c.2338G>A
  hgvsp: ENSP00000387071.1:p.Gly780Ser
  variant of: http://identifiers.org/hgnc/25951
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1367
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6731
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6977
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2438
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1037
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6396
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3086
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4441
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6086
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1730
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 629
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4411
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 742
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6722
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5605
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2296
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4525
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1957
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9724
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Gly780Ser
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
population: East Asian
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum

2-64800167-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64800167
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 64800167
    reference: chr 2
allele count: 1
allele frequency: 8.237367996177861e-6
allele num: 121398
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000397726
  ensembl transcript: ENST00000422803
  gene symbol: AFTPH
  hgvsc: ENST00000422803.1:c.2359C>T
  hgvsp: ENSP00000397726.1:p.Pro787Ser
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000387071
  ensembl transcript: ENST00000409933
  gene symbol: AFTPH
  hgvsc: ENST00000409933.1:c.2359C>T
  hgvsp: ENSP00000387071.1:p.Pro787Ser
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000238856
  ensembl transcript: ENST00000238856
  gene symbol: AFTPH
  hgvsc: ENST00000238856.4:c.2359C>T
  hgvsp: ENSP00000238856.4:p.Pro787Ser
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000119844
  ensembl transcript: ENST00000487769
  gene symbol: AFTPH
  hgvsc: ENST00000487769.1:n.622C>T
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000238855
  ensembl transcript: ENST00000238855
  gene symbol: AFTPH
  hgvsc: ENST00000238855.7:c.2359C>T
  hgvsp: ENSP00000238855.7:p.Pro787Ser
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000119844
  ensembl transcript: ENST00000498706
  gene symbol: AFTPH
  hgvsc: ENST00000498706.1:n.2477C>T
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000386913
  ensembl transcript: ENST00000409183
  gene symbol: AFTPH
  hgvsc: ENST00000409183.1:c.1252C>T
  hgvsp: ENSP00000386913.1:p.Pro418Ser
  variant of: http://identifiers.org/hgnc/25951
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 629
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6084
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6724
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 742
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2438
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4439
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6729
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1367
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2296
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1730
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4411
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3086
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5606
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6978
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1037
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6395
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1789
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1956
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Pro787Ser
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: African
population: European (Finnish)
population: Other
reference allele: C
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum

2-64800173-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64800173
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 64800173
    reference: chr 2
allele count: 2
allele frequency: 1.647582173160887e-5
allele num: 121390
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000238855
  ensembl transcript: ENST00000238855
  gene symbol: AFTPH
  hgvsc: ENST00000238855.7:c.2365A>G
  hgvsp: ENSP00000238855.7:p.Met789Val
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000397726
  ensembl transcript: ENST00000422803
  gene symbol: AFTPH
  hgvsc: ENST00000422803.1:c.2365A>G
  hgvsp: ENSP00000397726.1:p.Met789Val
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000387071
  ensembl transcript: ENST00000409933
  gene symbol: AFTPH
  hgvsc: ENST00000409933.1:c.2365A>G
  hgvsp: ENSP00000387071.1:p.Met789Val
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000386913
  ensembl transcript: ENST00000409183
  gene symbol: AFTPH
  hgvsc: ENST00000409183.1:c.1258A>G
  hgvsp: ENSP00000386913.1:p.Met420Val
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000119844
  ensembl transcript: ENST00000498706
  gene symbol: AFTPH
  hgvsc: ENST00000498706.1:n.2483A>G
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000238856
  ensembl transcript: ENST00000238856
  gene symbol: AFTPH
  hgvsc: ENST00000238856.4:c.2365A>G
  hgvsp: ENSP00000238856.4:p.Met789Val
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000119844
  ensembl transcript: ENST00000487769
  gene symbol: AFTPH
  hgvsc: ENST00000487769.1:n.628A>G
  variant of: http://identifiers.org/hgnc/25951
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6979
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4436
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 742
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6081
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1367
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6730
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6724
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1038
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6393
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4411
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5605
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 629
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2296
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2438
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3086
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1730
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1956
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3301
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Met789Val
num of homozygotes: 0
population: European (Finnish)
population: African
population: Other
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Latino
reference allele: A
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD

2-64800178-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64800178
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 64800178
    reference: chr 2
allele count: 1
allele frequency: 8.238046594391538e-6
allele num: 121388
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000238856
  ensembl transcript: ENST00000238856
  gene symbol: AFTPH
  hgvsc: ENST00000238856.4:c.2370C>T
  hgvsp: ENST00000238856.4:c.2370C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000238855
  ensembl transcript: ENST00000238855
  gene symbol: AFTPH
  hgvsc: ENST00000238855.7:c.2370C>T
  hgvsp: ENST00000238855.7:c.2370C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000397726
  ensembl transcript: ENST00000422803
  gene symbol: AFTPH
  hgvsc: ENST00000422803.1:c.2370C>T
  hgvsp: ENST00000422803.1:c.2370C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000119844
  ensembl transcript: ENST00000498706
  gene symbol: AFTPH
  hgvsc: ENST00000498706.1:n.2488C>T
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000386913
  ensembl transcript: ENST00000409183
  gene symbol: AFTPH
  hgvsc: ENST00000409183.1:c.1263C>T
  hgvsp: ENST00000409183.1:c.1263C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000387071
  ensembl transcript: ENST00000409933
  gene symbol: AFTPH
  hgvsc: ENST00000409933.1:c.2370C>T
  hgvsp: ENST00000409933.1:c.2370C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000119844
  ensembl transcript: ENST00000487769
  gene symbol: AFTPH
  hgvsc: ENST00000487769.1:n.633C>T
  variant of: http://identifiers.org/hgnc/25951
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1730
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1367
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5605
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 629
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6395
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6729
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2296
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6728
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2438
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3086
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1037
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6978
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4428
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6081
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 742
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4410
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3302
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3372
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9711
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1956
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Asn790Asn
num of homozygotes: 0
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: African
population: South Asian
population: Latino
population: East Asian
reference allele: C
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum

2-64800184-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64800184
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 64800184
    reference: chr 2
allele count: 5
allele frequency: 4.119430529923544e-5
allele num: 121376
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000238855
  ensembl transcript: ENST00000238855
  gene symbol: AFTPH
  hgvsc: ENST00000238855.7:c.2376T>C
  hgvsp: ENST00000238855.7:c.2376T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000387071
  ensembl transcript: ENST00000409933
  gene symbol: AFTPH
  hgvsc: ENST00000409933.1:c.2376T>C
  hgvsp: ENST00000409933.1:c.2376T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000386913
  ensembl transcript: ENST00000409183
  gene symbol: AFTPH
  hgvsc: ENST00000409183.1:c.1269T>C
  hgvsp: ENST00000409183.1:c.1269T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000119844
  ensembl transcript: ENST00000487769
  gene symbol: AFTPH
  hgvsc: ENST00000487769.1:n.639T>C
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000238856
  ensembl transcript: ENST00000238856
  gene symbol: AFTPH
  hgvsc: ENST00000238856.4:c.2376T>C
  hgvsp: ENST00000238856.4:c.2376T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000119844
  ensembl transcript: ENST00000498706
  gene symbol: AFTPH
  hgvsc: ENST00000498706.1:n.2494T>C
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000397726
  ensembl transcript: ENST00000422803
  gene symbol: AFTPH
  hgvsc: ENST00000422803.1:c.2376T>C
  hgvsp: ENST00000422803.1:c.2376T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25951
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2296
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3086
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6083
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4418
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4408
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6978
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 742
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6727
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1037
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1367
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6729
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2440
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 5604
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6392
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 631
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1730
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3453
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9706
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Cys792Cys
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
reference allele: T
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum

2-64800189-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64800189
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 64800189
    reference: chr 2
allele count: 1
allele frequency: 8.240083060037246e-6
allele num: 121358
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000238855
  ensembl transcript: ENST00000238855
  gene symbol: AFTPH
  hgvsc: ENST00000238855.7:c.2381C>G
  hgvsp: ENSP00000238855.7:p.Ser794Cys
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000238856
  ensembl transcript: ENST00000238856
  gene symbol: AFTPH
  hgvsc: ENST00000238856.4:c.2381C>G
  hgvsp: ENSP00000238856.4:p.Ser794Cys
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000387071
  ensembl transcript: ENST00000409933
  gene symbol: AFTPH
  hgvsc: ENST00000409933.1:c.2381C>G
  hgvsp: ENSP00000387071.1:p.Ser794Cys
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000119844
  ensembl transcript: ENST00000487769
  gene symbol: AFTPH
  hgvsc: ENST00000487769.1:n.644C>G
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000397726
  ensembl transcript: ENST00000422803
  gene symbol: AFTPH
  hgvsc: ENST00000422803.1:c.2381C>G
  hgvsp: ENSP00000397726.1:p.Ser794Cys
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000386913
  ensembl transcript: ENST00000409183
  gene symbol: AFTPH
  hgvsc: ENST00000409183.1:c.1274C>G
  hgvsp: ENSP00000386913.1:p.Ser425Cys
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000119844
  ensembl transcript: ENST00000498706
  gene symbol: AFTPH
  hgvsc: ENST00000498706.1:n.2499C>G
  variant of: http://identifiers.org/hgnc/25951
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5604
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4408
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6977
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6082
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1037
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1730
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6730
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2437
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 629
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4395
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6394
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2296
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3086
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6730
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1368
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 742
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9674
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3302
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1786
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Ser794Cys
num of homozygotes: 0
population: Other
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/2-64800195-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64800195
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 64800195
    reference: chr 2
allele count: 1
allele frequency: 8.241169586787756e-6
allele num: 121342
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000238855
  ensembl transcript: ENST00000238855
  gene symbol: AFTPH
  hgvsc: ENST00000238855.7:c.2387A>C
  hgvsp: ENSP00000238855.7:p.Gln796Pro
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000238856
  ensembl transcript: ENST00000238856
  gene symbol: AFTPH
  hgvsc: ENST00000238856.4:c.2387A>C
  hgvsp: ENSP00000238856.4:p.Gln796Pro
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000387071
  ensembl transcript: ENST00000409933
  gene symbol: AFTPH
  hgvsc: ENST00000409933.1:c.2387A>C
  hgvsp: ENSP00000387071.1:p.Gln796Pro
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000119844
  ensembl transcript: ENST00000487769
  gene symbol: AFTPH
  hgvsc: ENST00000487769.1:n.650A>C
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000119844
  ensembl transcript: ENST00000498706
  gene symbol: AFTPH
  hgvsc: ENST00000498706.1:n.2505A>C
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000397726
  ensembl transcript: ENST00000422803
  gene symbol: AFTPH
  hgvsc: ENST00000422803.1:c.2387A>C
  hgvsp: ENSP00000397726.1:p.Gln796Pro
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000386913
  ensembl transcript: ENST00000409183
  gene symbol: AFTPH
  hgvsc: ENST00000409183.1:c.1280A>C
  hgvsp: ENSP00000386913.1:p.Gln427Pro
  variant of: http://identifiers.org/hgnc/25951
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4408
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5604
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6730
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1730
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6977
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 629
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4369
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6727
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6074
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1037
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3085
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2296
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1367
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 742
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6395
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2438
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1786
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9643
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3373
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Gln796Pro
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: Latino
population: East Asian
population: African
population: South Asian
population: European (Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: FS
site quality: ClippingRankSum

2-64800197-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64800197
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 64800197
    reference: chr 2
allele count: 1
allele frequency: 8.241169586787756e-6
allele num: 121342
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000387071
  ensembl transcript: ENST00000409933
  gene symbol: AFTPH
  hgvsc: ENST00000409933.1:c.2389T>G
  hgvsp: ENSP00000387071.1:p.Phe797Val
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000119844
  ensembl transcript: ENST00000487769
  gene symbol: AFTPH
  hgvsc: ENST00000487769.1:n.652T>G
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000386913
  ensembl transcript: ENST00000409183
  gene symbol: AFTPH
  hgvsc: ENST00000409183.1:c.1282T>G
  hgvsp: ENSP00000386913.1:p.Phe428Val
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000238855
  ensembl transcript: ENST00000238855
  gene symbol: AFTPH
  hgvsc: ENST00000238855.7:c.2389T>G
  hgvsp: ENSP00000238855.7:p.Phe797Val
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000397726
  ensembl transcript: ENST00000422803
  gene symbol: AFTPH
  hgvsc: ENST00000422803.1:c.2389T>G
  hgvsp: ENSP00000397726.1:p.Phe797Val
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000238856
  ensembl transcript: ENST00000238856
  gene symbol: AFTPH
  hgvsc: ENST00000238856.4:c.2389T>G
  hgvsp: ENSP00000238856.4:p.Phe797Val
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000119844
  ensembl transcript: ENST00000498706
  gene symbol: AFTPH
  hgvsc: ENST00000498706.1:n.2507T>G
  variant of: http://identifiers.org/hgnc/25951
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6077
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5604
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2296
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6978
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6726
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 629
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1730
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6395
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 742
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1368
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4408
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4356
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1037
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3085
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2437
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6730
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4511
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Phe797Val
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
population: European (Finnish)
population: Latino
reference allele: T
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: MQRankSum

2-64800199-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64800199
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 64800199
    reference: chr 2
allele count: 1
allele frequency: 8.241577108195424e-6
allele num: 121336
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000386913
  ensembl transcript: ENST00000409183
  gene symbol: AFTPH
  hgvsc: ENST00000409183.1:c.1284C>G
  hgvsp: ENSP00000386913.1:p.Phe428Leu
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000397726
  ensembl transcript: ENST00000422803
  gene symbol: AFTPH
  hgvsc: ENST00000422803.1:c.2391C>G
  hgvsp: ENSP00000397726.1:p.Phe797Leu
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000238855
  ensembl transcript: ENST00000238855
  gene symbol: AFTPH
  hgvsc: ENST00000238855.7:c.2391C>G
  hgvsp: ENSP00000238855.7:p.Phe797Leu
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000119844
  ensembl transcript: ENST00000487769
  gene symbol: AFTPH
  hgvsc: ENST00000487769.1:n.654C>G
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000238856
  ensembl transcript: ENST00000238856
  gene symbol: AFTPH
  hgvsc: ENST00000238856.4:c.2391C>G
  hgvsp: ENSP00000238856.4:p.Phe797Leu
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000387071
  ensembl transcript: ENST00000409933
  gene symbol: AFTPH
  hgvsc: ENST00000409933.1:c.2391C>G
  hgvsp: ENSP00000387071.1:p.Phe797Leu
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000119844
  ensembl transcript: ENST00000498706
  gene symbol: AFTPH
  hgvsc: ENST00000498706.1:n.2509C>G
  variant of: http://identifiers.org/hgnc/25951
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6720
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6730
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6076
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2438
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4348
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1367
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3085
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6396
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2295
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5604
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1730
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4408
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6978
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1037
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 742
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 629
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3374
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4511
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Phe797Leu
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: East Asian
population: African
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum

2-64800212-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64800212
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 64800212
    reference: chr 2
allele count: 2
allele frequency: 1.649457328538911e-5
allele num: 121252
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000397726
  ensembl transcript: ENST00000422803
  gene symbol: AFTPH
  hgvsc: ENST00000422803.1:c.2394+10T>C
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl transcript: ENST00000487769
  gene symbol: AFTPH
  hgvsc: ENST00000487769.1:n.657+10T>C
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000387071
  ensembl transcript: ENST00000409933
  gene symbol: AFTPH
  hgvsc: ENST00000409933.1:c.2394+10T>C
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000238856
  ensembl transcript: ENST00000238856
  gene symbol: AFTPH
  hgvsc: ENST00000238856.4:c.2394+10T>C
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000386913
  ensembl transcript: ENST00000409183
  gene symbol: AFTPH
  hgvsc: ENST00000409183.1:c.1287+10T>C
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000238855
  ensembl transcript: ENST00000238855
  gene symbol: AFTPH
  hgvsc: ENST00000238855.7:c.2394+10T>C
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl transcript: ENST00000498706
  gene symbol: AFTPH
  hgvsc: ENST00000498706.1:n.2512+10T>C
  variant of: http://identifiers.org/hgnc/25951
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 629
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4409
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4159
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1367
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6393
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 742
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2437
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3085
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6020
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2295
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6693
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5604
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1730
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1037
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6730
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6980
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32561
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4489
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 206
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1953
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum

2-64800213-CTA-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64800213
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 64800211
    reference: chr 2
allele count: 3
allele frequency: 2.474226804123711e-5
allele num: 121250
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl transcript: ENST00000498706
  gene symbol: AFTPH
  hgvsc: ENST00000498706.1:n.2512+15_2512+16delAT
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000387071
  ensembl transcript: ENST00000409933
  gene symbol: AFTPH
  hgvsc: ENST00000409933.1:c.2394+15_2394+16delAT
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000397726
  ensembl transcript: ENST00000422803
  gene symbol: AFTPH
  hgvsc: ENST00000422803.1:c.2394+15_2394+16delAT
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000238856
  ensembl transcript: ENST00000238856
  gene symbol: AFTPH
  hgvsc: ENST00000238856.4:c.2394+15_2394+16delAT
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000386913
  ensembl transcript: ENST00000409183
  gene symbol: AFTPH
  hgvsc: ENST00000409183.1:c.1287+15_1287+16delAT
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000238855
  ensembl transcript: ENST00000238855
  gene symbol: AFTPH
  hgvsc: ENST00000238855.7:c.2394+15_2394+16delAT
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl transcript: ENST00000487769
  gene symbol: AFTPH
  hgvsc: ENST00000487769.1:n.657+15_657+16delAT
  variant of: http://identifiers.org/hgnc/25951
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1730
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 629
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 742
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6699
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5605
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6730
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1036
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4408
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2295
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4136
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6019
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6982
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1367
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6401
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3085
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2437
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 211
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4482
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3452
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
reference allele: CTA
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ

2-64800215-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64800215
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 64800215
    reference: chr 2
allele count: 3
allele frequency: 2.474634991338777e-5
allele num: 121230
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000386913
  ensembl transcript: ENST00000409183
  gene symbol: AFTPH
  hgvsc: ENST00000409183.1:c.1287+13A>G
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000397726
  ensembl transcript: ENST00000422803
  gene symbol: AFTPH
  hgvsc: ENST00000422803.1:c.2394+13A>G
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl transcript: ENST00000487769
  gene symbol: AFTPH
  hgvsc: ENST00000487769.1:n.657+13A>G
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000238855
  ensembl transcript: ENST00000238855
  gene symbol: AFTPH
  hgvsc: ENST00000238855.7:c.2394+13A>G
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl transcript: ENST00000498706
  gene symbol: AFTPH
  hgvsc: ENST00000498706.1:n.2512+13A>G
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000387071
  ensembl transcript: ENST00000409933
  gene symbol: AFTPH
  hgvsc: ENST00000409933.1:c.2394+13A>G
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000238856
  ensembl transcript: ENST00000238856
  gene symbol: AFTPH
  hgvsc: ENST00000238856.4:c.2394+13A>G
  variant of: http://identifiers.org/hgnc/25951
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6396
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1730
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6690
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2437
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3085
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6025
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2295
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6728
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4057
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5606
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1367
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 742
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6979
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4408
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1036
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3296
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1784
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1947
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4476
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9232
  bin: 6.25e1
  variant carriers: 1
num of homozygotes: 0
population: East Asian
population: South Asian
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
reference allele: A
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: QD

2-64800218-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64800218
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 64800218
    reference: chr 2
allele count: 1
allele frequency: 8.249191579225235e-6
allele num: 121224
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl transcript: ENST00000487769
  gene symbol: AFTPH
  hgvsc: ENST00000487769.1:n.657+16T>C
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000386913
  ensembl transcript: ENST00000409183
  gene symbol: AFTPH
  hgvsc: ENST00000409183.1:c.1287+16T>C
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000238856
  ensembl transcript: ENST00000238856
  gene symbol: AFTPH
  hgvsc: ENST00000238856.4:c.2394+16T>C
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl transcript: ENST00000498706
  gene symbol: AFTPH
  hgvsc: ENST00000498706.1:n.2512+16T>C
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000397726
  ensembl transcript: ENST00000422803
  gene symbol: AFTPH
  hgvsc: ENST00000422803.1:c.2394+16T>C
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000387071
  ensembl transcript: ENST00000409933
  gene symbol: AFTPH
  hgvsc: ENST00000409933.1:c.2394+16T>C
  variant of: http://identifiers.org/hgnc/25951
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000119844
  ensembl protein: ENSP00000238855
  ensembl transcript: ENST00000238855
  gene symbol: AFTPH
  hgvsc: ENST00000238855.7:c.2394+16T>C
  variant of: http://identifiers.org/hgnc/25951
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3992
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 743
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5995
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4410
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3085
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6979
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6391
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2295
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6728
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1367
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2435
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1038
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
reference allele: T

GenotypeQuality
all individuals: 3433
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2955
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35458
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 3595
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1872
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.609840476648087e-5
allele num: 10406
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.997242536866083e-5
allele num: 66728
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 8.42e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.629999999999999e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.9e-3

FS
type: SiteQuality
SIO_000300: 1.107e0

MQRankSum
type: SiteQuality
SIO_000300: 6.2e-1

DP
type: SiteQuality
SIO_000300: 2.949064e6

ClippingRankSum
type: SiteQuality
SIO_000300: -6.13e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.54e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.229e1

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35457
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 5
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3428
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3187
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2956
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3594
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1871
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1624
bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498621268433042e-5
allele num: 66728
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.472e0

MQ
type: SiteQuality
SIO_000300: 5.888e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.1e-3

MQRankSum
type: SiteQuality
SIO_000300: -8.999999999999999e-3

QD
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FS
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SIO_000300: 8.972e0

BaseQRankSum
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SIO_000300: -1.793e0

ReadPosRankSum
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SIO_000300: 1.24e0

ClippingRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 2.948775e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 908
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66712
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African
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allele frequency: 9.609840476648087e-5
allele num: 10406
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQRankSum
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MQ
type: SiteQuality
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DP
type: SiteQuality
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ClippingRankSum
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SIO_000300: 7.46e-1

QD
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FS
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: -8.023999999999999e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.64e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.98e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66684
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 8.647526807333103e-5
allele num: 11564
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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MQRankSum
type: SiteQuality
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DP
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ClippingRankSum
type: SiteQuality
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VQSLOD
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MQ
type: SiteQuality
SIO_000300: 5.967e1

BaseQRankSum
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FS
type: SiteQuality
SIO_000300: 9.993e0

InbreedingCoeff
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SIO_000300: -1.0e-4

QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 3.36e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele frequency: 0.0e0
allele num: 16426
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
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Other
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allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 3.000660145231951e-5
allele num: 66652
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 2.43e-1

DP
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SIO_000300: 2.944397e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.29e0

MQRankSum
type: SiteQuality
SIO_000300: 1.17e-1

BaseQRankSum
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QD
type: SiteQuality
SIO_000300: 1.065e1

VQSLOD
type: SiteQuality
SIO_000300: 2.46e-1

FS
type: SiteQuality
SIO_000300: 1.854e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele frequency: 6.431695394906098e-5
allele num: 15548
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66336
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11548
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Other
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allele count: 0
allele frequency: 0.0e0
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African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -9.14e-1

QD
type: SiteQuality
SIO_000300: 1.27e1

MQ
type: SiteQuality
SIO_000300: 5.963e1

MQRankSum
type: SiteQuality
SIO_000300: 1.8e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.33e-1

FS
type: SiteQuality
SIO_000300: 8.709e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.45e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.68e-1

DP
type: SiteQuality
SIO_000300: 2.910045e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11526
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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South Asian
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allele count: 0
allele frequency: 0.0e0
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African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.518556763651825e-5
allele num: 65852
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.858229e6

ReadPosRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -9.74e-1

VQSLOD
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BaseQRankSum
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MQRankSum
type: SiteQuality
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FS
type: SiteQuality
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InbreedingCoeff
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MQ
type: SiteQuality
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QD
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
type: Population
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num of homozygotes: 0

Latino
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allele frequency: 1.041485853150495e-3
allele num: 11522
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East Asian
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
allele num: 10320
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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South Asian
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ClippingRankSum
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QD
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FS
type: SiteQuality
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BaseQRankSum
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DP
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VQSLOD
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InbreedingCoeff
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ReadPosRankSum
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MQRankSum
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele num: 65814
num of homozygotes: 0

East Asian
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African
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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num of homozygotes: 0

South Asian
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VQSLOD
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BaseQRankSum
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FS
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DP
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ClippingRankSum
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MQRankSum
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QD
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MQ
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InbreedingCoeff
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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European (Non-Finnish)
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European (Finnish)
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allele num: 6612
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South Asian
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East Asian
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allele frequency: 1.160362032954282e-4
allele num: 8618
num of homozygotes: 0

Latino
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ClippingRankSum
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DP
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ReadPosRankSum
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FS
type: SiteQuality
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MQ
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MQRankSum
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InbreedingCoeff
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BaseQRankSum
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VQSLOD
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele frequency: 1.523600572873815e-5
allele num: 65634
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East Asian
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6612
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Other
type: Population
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Latino
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African
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South Asian
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num of homozygotes: 0

BaseQRankSum
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QD
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FS
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ReadPosRankSum
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InbreedingCoeff
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MQRankSum
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MQ
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VQSLOD
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DP
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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num of homozygotes: 0

South Asian
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num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10184
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.164144353899884e-4
allele num: 8590
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 856
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 65352
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.169e1

DP
type: SiteQuality
SIO_000300: 2.827676e6

MQ
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BaseQRankSum
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SIO_000300: 3.75e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.22e-1

QD
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MQRankSum
type: SiteQuality
SIO_000300: 1.13e0

VQSLOD
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SIO_000300: -1.758e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.1e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.31e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10368
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.501140867058965e-5
allele num: 66616
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11514
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.8e-3

DP
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SIO_000300: 2.825791e6

QD
type: SiteQuality
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MQ
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SIO_000300: 6.0e1

ClippingRankSum
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SIO_000300: 1.22e0

VQSLOD
type: SiteQuality
SIO_000300: -2.721e0

FS
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SIO_000300: 0.0e0

ReadPosRankSum
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SIO_000300: -9.340000000000001e-1

BaseQRankSum
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SIO_000300: 3.26e0

MQRankSum
type: SiteQuality
SIO_000300: 4.25e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
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allele frequency: 6.936416184971098e-4
allele num: 8650
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10368
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11528
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66674
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

DP
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 8.92e-1

InbreedingCoeff
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SIO_000300: 8.0e-4

ReadPosRankSum
type: SiteQuality
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QD
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SIO_000300: 1.515e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 2.38e0

MQRankSum
type: SiteQuality
SIO_000300: 1.16e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.96e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.3e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10368
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66678
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11530
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.05913717886573e-5
allele num: 16504
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.812e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -1.66e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.66e0

FS
type: SiteQuality
SIO_000300: 5.547e0

MQRankSum
type: SiteQuality
SIO_000300: 4.9e-2

ReadPosRankSum
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SIO_000300: 2.04e0

DP
type: SiteQuality
SIO_000300: 2.831811e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -6.462e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11536
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499610101373643e-5
allele num: 66684
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10370
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.05e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.1e-2

FS
type: SiteQuality
SIO_000300: 1.3046e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -1.54e0

MQ
type: SiteQuality
SIO_000300: 5.959e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.21e0

MQRankSum
type: SiteQuality
SIO_000300: -1.18e-1

DP
type: SiteQuality
SIO_000300: 2.832307e6

QD
type: SiteQuality
SIO_000300: 1.478e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66682
num of homozygotes: 0

Other
type: Population
allele count: 3
allele frequency: 3.303964757709251e-3
allele num: 908
num of homozygotes: 0

African
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allele count: 343
allele frequency: 3.308256172839506e-2
allele num: 10368
num of homozygotes: 4

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Latino
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allele count: 12
allele frequency: 1.040221914008322e-3
allele num: 11536
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.47e0

VQSLOD
type: SiteQuality
SIO_000300: 6.1e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.76e-1

MQRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.979e1

QD
type: SiteQuality
SIO_000300: 1.456e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.76e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.27e-2

DP
type: SiteQuality
SIO_000300: 2.84118e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

Latino
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allele count: 2
allele frequency: 1.73460537727667e-4
allele num: 11530
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66684
num of homozygotes: 0

African
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Other
type: Population
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BaseQRankSum
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InbreedingCoeff
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FS
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VQSLOD
type: SiteQuality
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ReadPosRankSum
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ClippingRankSum
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MQ
type: SiteQuality
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QD
type: SiteQuality
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MQRankSum
type: SiteQuality
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10374
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6606
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East Asian
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66690
num of homozygotes: 0

South Asian
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allele frequency: 6.05766900896535e-5
allele num: 16508
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.161e1

FS
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InbreedingCoeff
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ReadPosRankSum
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BaseQRankSum
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MQ
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MQRankSum
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VQSLOD
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ClippingRankSum
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DP
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele frequency: 6.058403004967891e-5
allele num: 16506
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 66696
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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African
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

East Asian
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num of homozygotes: 0

Other
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num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
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MQ
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VQSLOD
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BaseQRankSum
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InbreedingCoeff
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FS
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QD
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MQRankSum
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DP
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ClippingRankSum
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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num of homozygotes: 0

Latino
type: Population
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 3
allele frequency: 4.497885993583016e-5
allele num: 66698
num of homozygotes: 0

Other
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allele num: 908
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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East Asian
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num of homozygotes: 0

South Asian
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MQRankSum
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BaseQRankSum
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VQSLOD
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DP
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ReadPosRankSum
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MQ
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FS
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ClippingRankSum
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InbreedingCoeff
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10388
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11538
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.499250374812594e-5
allele num: 66700
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.805e1

QD
type: SiteQuality
SIO_000300: 1.142e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.402e0

FS
type: SiteQuality
SIO_000300: 4.77e0

DP
type: SiteQuality
SIO_000300: 2.843386e6

VQSLOD
type: SiteQuality
SIO_000300: -7.292999999999999e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.23e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -6.48e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.46e-1

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
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bin: 7.25e1
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 26962
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 2
bin: 4.75e1
variant carriers: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 2.997961386257345e-5
allele num: 66712
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10392
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -3.77e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.73e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.1e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.27e-1

DP
type: SiteQuality
SIO_000300: 2.844166e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -9.58e-1

QD
type: SiteQuality
SIO_000300: 1.244e1

FS
type: SiteQuality
SIO_000300: 2.797e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498980693128672e-5
allele num: 66712
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10392
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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MQRankSum
type: SiteQuality
SIO_000300: -3.77e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.27e-1

QD
type: SiteQuality
SIO_000300: 1.244e1

VQSLOD
type: SiteQuality
SIO_000300: 2.73e0

DP
type: SiteQuality
SIO_000300: 2.844166e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -9.58e-1

FS
type: SiteQuality
SIO_000300: 2.797e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.1e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 40
allele frequency: 5.995743022454057e-4
allele num: 66714
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.661008141347653e-5
allele num: 11546
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 32
allele frequency: 4.842615012106538e-3
allele num: 6608
num of homozygotes: 0

Other
type: Population
allele count: 2
allele frequency: 2.202643171806168e-3
allele num: 908
num of homozygotes: 0

African
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allele count: 2
allele frequency: 1.924557351809084e-4
allele num: 10392
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.24e0

QD
type: SiteQuality
SIO_000300: 1.232e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.95e-1

FS
type: SiteQuality
SIO_000300: 1.253e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.39e0

MQ
type: SiteQuality
SIO_000300: 5.957e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.02e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

MQRankSum
type: SiteQuality
SIO_000300: -4.5e-2

DP
type: SiteQuality
SIO_000300: 2.847337e6

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 6
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10392
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 7.494678778067572e-5
allele num: 66714
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11546
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.39e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.02e-1

QD
type: SiteQuality
SIO_000300: 1.232e1

MQRankSum
type: SiteQuality
SIO_000300: -4.5e-2

FS
type: SiteQuality
SIO_000300: 1.253e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.95e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

MQ
type: SiteQuality
SIO_000300: 5.957e1

VQSLOD
type: SiteQuality
SIO_000300: 3.24e0

DP
type: SiteQuality
SIO_000300: 2.847337e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 4438
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GenotypeQuality
all individuals: 2
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10392
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66716
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.21153380179307e-4
allele num: 16508
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11544
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.17e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.46e0

MQRankSum
type: SiteQuality
SIO_000300: 2.59e-1

FS
type: SiteQuality
SIO_000300: 2.733e0

DP
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SIO_000300: 2.844861e6

BaseQRankSum
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VQSLOD
type: SiteQuality
SIO_000300: 8.56e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.238e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele frequency: 6.056935190793458e-5
allele num: 16510
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66722
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

QD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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FS
type: SiteQuality
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MQRankSum
type: SiteQuality
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ReadPosRankSum
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VQSLOD
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BaseQRankSum
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DP
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MQ
type: SiteQuality
SIO_000300: 5.824e1

ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
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allele frequency: 1.15606936416185e-4
allele num: 8650
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66726
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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South Asian
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allele count: 0
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MQRankSum
type: SiteQuality
SIO_000300: 7.92e-1

InbreedingCoeff
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.988e1

VQSLOD
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DP
type: SiteQuality
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BaseQRankSum
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QD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 2.4e-1

FS
type: SiteQuality
SIO_000300: 5.21e-1

ReadPosRankSum
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11552
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66724
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
allele num: 16510
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
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Other
type: Population
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East Asian
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MQ
type: SiteQuality
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QD
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InbreedingCoeff
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ReadPosRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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BaseQRankSum
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FS
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ClippingRankSum
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VQSLOD
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DP
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11548
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.498711108446736e-5
allele num: 66724
num of homozygotes: 0

South Asian
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FS
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SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.5e-2

DP
type: SiteQuality
SIO_000300: 2.844884e6

MQ
type: SiteQuality
SIO_000300: 5.954e1

QD
type: SiteQuality
SIO_000300: 5.24e0

VQSLOD
type: SiteQuality
SIO_000300: -1.543e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.5e-2

MQRankSum
type: SiteQuality
SIO_000300: -3.84e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.64e-1

GenotypeQuality
all individuals: 2247
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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bin: 9.75e1
variant carriers: 4

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3781
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 5.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66716
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Latino
type: Population
allele count: 4
allele frequency: 3.465603881476347e-4
allele num: 11542
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.925e1

FS
type: SiteQuality
SIO_000300: 8.95e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.37e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.5e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.68e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.06e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.63e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.68e-1

DP
type: SiteQuality
SIO_000300: 2.844459e6

QD
type: SiteQuality
SIO_000300: 1.254e1

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 85
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 3
bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 4431
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 2.75e1
variant carriers: 0

Latino
type: Population
allele count: 4
allele frequency: 3.46860908775581e-4
allele num: 11532
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.921968095329617e-4
allele num: 10406
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 47
allele frequency: 7.045420476690152e-4
allele num: 66710
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.15e-1

QD
type: SiteQuality
SIO_000300: 1.368e1

MQRankSum
type: SiteQuality
SIO_000300: 3.9e-1

MQ
type: SiteQuality
SIO_000300: 5.964e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.66e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.2e-3

FS
type: SiteQuality
SIO_000300: 1.252e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.52e0

VQSLOD
type: SiteQuality
SIO_000300: 4.09e0

DP
type: SiteQuality
SIO_000300: 2.8458e6

GenotypeQuality
all individuals: 10808
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 2708
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 5217
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 4.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 101
allele frequency: 1.513970500059959e-3
allele num: 66712
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 12
allele frequency: 1.817080557238038e-3
allele num: 6604
num of homozygotes: 0

Other
type: Population
allele count: 11
allele frequency: 1.211453744493392e-2
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 691
allele frequency: 6.640399769363829e-2
allele num: 10406
num of homozygotes: 24

East Asian
type: Population
allele count: 1246
allele frequency: 1.441462285978714e-1
allele num: 8644
num of homozygotes: 102

Latino
type: Population
allele count: 36
allele frequency: 3.121206866655107e-3
allele num: 11534
num of homozygotes: 1

South Asian
type: Population
allele count: 93
allele frequency: 5.633632178337775e-3
allele num: 16508
num of homozygotes: 3

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.44e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -3.04e0

VQSLOD
type: SiteQuality
SIO_000300: 6.74e0

QD
type: SiteQuality
SIO_000300: 1.379e1

MQRankSum
type: SiteQuality
SIO_000300: 1.67e-1

MQ
type: SiteQuality
SIO_000300: 5.97e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.915712e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.41e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.8e-2

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2280
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GenotypeQuality
all individuals: 10994
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variant carriers: 0

GenotypeQuality
all individuals: 92
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variant carriers: 0

GenotypeQuality
all individuals: 49
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variant carriers: 0

GenotypeQuality
all individuals: 4530
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variant carriers: 0

GenotypeQuality
all individuals: 2796
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variant carriers: 0

GenotypeQuality
all individuals: 29
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GenotypeQuality
all individuals: 4302
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variant carriers: 0

GenotypeQuality
all individuals: 26111
bin: 9.75e1
variant carriers: 2

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11524
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66702
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.313208420078649e-4
allele num: 8646
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 9.544e0

VQSLOD
type: SiteQuality
SIO_000300: 1.02e0

MQRankSum
type: SiteQuality
SIO_000300: 1.53e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.47e-1

DP
type: SiteQuality
SIO_000300: 2.823335e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.01e-1

QD
type: SiteQuality
SIO_000300: 1.676e1

MQ
type: SiteQuality
SIO_000300: 5.998e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.6e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -5.5e-2

GenotypeQuality
all individuals: 2280
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2795
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variant carriers: 0

GenotypeQuality
all individuals: 0
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variant carriers: 0

GenotypeQuality
all individuals: 141
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variant carriers: 0

GenotypeQuality
all individuals: 26
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variant carriers: 0

GenotypeQuality
all individuals: 26
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variant carriers: 0

GenotypeQuality
all individuals: 4529
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variant carriers: 0

GenotypeQuality
all individuals: 90
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26109
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 4302
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11526
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.49748141041017e-5
allele num: 66704
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.47e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.0e-1

DP
type: SiteQuality
SIO_000300: 2.82332e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.156e0

QD
type: SiteQuality
SIO_000300: 1.74e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -4.76e-1

MQ
type: SiteQuality
SIO_000300: 5.941e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.3e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.822e0

GenotypeQuality
all individuals: 5377
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 91
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variant carriers: 0

GenotypeQuality
all individuals: 142
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variant carriers: 0

GenotypeQuality
all individuals: 65
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variant carriers: 0

GenotypeQuality
all individuals: 26109
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 3830
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variant carriers: 0

GenotypeQuality
all individuals: 0
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variant carriers: 0

GenotypeQuality
all individuals: 4301
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variant carriers: 0

GenotypeQuality
all individuals: 24
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variant carriers: 0

GenotypeQuality
all individuals: 11030
bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66694
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 2.883506343713956e-4
allele num: 10404
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11524
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.3e-3

VQSLOD
type: SiteQuality
SIO_000300: 2.7e0

DP
type: SiteQuality
SIO_000300: 2.823431e6

MQRankSum
type: SiteQuality
SIO_000300: 4.08e-1

QD
type: SiteQuality
SIO_000300: 1.058e1

MQ
type: SiteQuality
SIO_000300: 5.923e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.12e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.746e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.79e-1

GenotypeQuality
all individuals: 178
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10663
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variant carriers: 0

GenotypeQuality
all individuals: 190
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GenotypeQuality
all individuals: 4513
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GenotypeQuality
all individuals: 2776
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26100
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 161
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32
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variant carriers: 0

GenotypeQuality
all individuals: 90
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3823
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11518
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.49947518368571e-5
allele num: 66690
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.321e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.62e0

VQSLOD
type: SiteQuality
SIO_000300: 6.07e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.27e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.286e0

DP
type: SiteQuality
SIO_000300: 2.81922e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.4e-3

MQRankSum
type: SiteQuality
SIO_000300: -8.69e-1

GenotypeQuality
all individuals: 15
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variant carriers: 0

GenotypeQuality
all individuals: 2275
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variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 408
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GenotypeQuality
all individuals: 156
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GenotypeQuality
all individuals: 3818
bin: 9.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 26098
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variant carriers: 2

GenotypeQuality
all individuals: 298
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 137
bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66676
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.737015806843842e-4
allele num: 11514
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16498
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.317e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.22e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

DP
type: SiteQuality
SIO_000300: 2.81246e6

VQSLOD
type: SiteQuality
SIO_000300: 1.87e0

MQRankSum
type: SiteQuality
SIO_000300: 2.81e-1

MQ
type: SiteQuality
SIO_000300: 5.925e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.12e0

FS
type: SiteQuality
SIO_000300: 2.318e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.086e0

GenotypeQuality
all individuals: 23
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 383
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 254
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2736
bin: 7.25e1
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GenotypeQuality
all individuals: 4283
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5002
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 197
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26101
bin: 9.75e1
variant carriers: 18

GenotypeQuality
all individuals: 2274
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3815
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 18
allele frequency: 2.700432069131061e-4
allele num: 66656
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11508
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16498
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 1.71e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.85e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.3e-1

FS
type: SiteQuality
SIO_000300: 7.62e-1

DP
type: SiteQuality
SIO_000300: 2.810087e6

QD
type: SiteQuality
SIO_000300: 1.725e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.2e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.69e-1

GenotypeQuality
all individuals: 2051
bin: 8.25e1
variant carriers: 223

GenotypeQuality
all individuals: 1562
bin: 9.25e1
variant carriers: 284

GenotypeQuality
all individuals: 37
bin: 1.25e1
variant carriers: 12

GenotypeQuality
all individuals: 47
bin: 1.75e1
variant carriers: 18

GenotypeQuality
all individuals: 1548
bin: 7.25e1
variant carriers: 103

GenotypeQuality
all individuals: 228
bin: 5.75e1
variant carriers: 63

GenotypeQuality
all individuals: 228
bin: 5.25e1
variant carriers: 75

GenotypeQuality
all individuals: 223
bin: 4.75e1
variant carriers: 41

GenotypeQuality
all individuals: 309
bin: 3.25e1
variant carriers: 27

GenotypeQuality
all individuals: 273
bin: 2.25e1
variant carriers: 13

European (Non-Finnish)
type: Population
allele count: 25728
allele frequency: 3.869919677506694e-1
allele num: 66482
num of homozygotes: 4978

East Asian
type: Population
allele count: 1548
allele frequency: 1.797909407665505e-1
allele num: 8610
num of homozygotes: 148

Latino
type: Population
allele count: 2705
allele frequency: 2.357503921910406e-1
allele num: 11474
num of homozygotes: 359

African
type: Population
allele count: 3319
allele frequency: 3.191346153846154e-1
allele num: 10400
num of homozygotes: 528

Other
type: Population
allele count: 344
allele frequency: 3.813747228381374e-1
allele num: 902
num of homozygotes: 67

European (Finnish)
type: Population
allele count: 2261
allele frequency: 3.439306358381503e-1
allele num: 6574
num of homozygotes: 382

South Asian
type: Population
allele count: 6633
allele frequency: 4.020974781765276e-1
allele num: 16496
num of homozygotes: 1393

BaseQRankSum
type: SiteQuality
SIO_000300: 3.12e0

VQSLOD
type: SiteQuality
SIO_000300: 4.67e0

MQ
type: SiteQuality
SIO_000300: 5.988e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.99e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.24e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.4e-2

DP
type: SiteQuality
SIO_000300: 3.063995e6

QD
type: SiteQuality
SIO_000300: 2.064e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.28e-2

GenotypeQuality
all individuals: 623
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1870
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 3039
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1363
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4121
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17461
bin: 9.75e1
variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10384
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6578
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11464
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.504166541319455e-5
allele num: 66482
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16468
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.799999999999999e-2

VQSLOD
type: SiteQuality
SIO_000300: 4.8e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.655e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 1.587e0

MQRankSum
type: SiteQuality
SIO_000300: 6.26e-1

DP
type: SiteQuality
SIO_000300: 2.547211e6

QD
type: SiteQuality
SIO_000300: 9.369999999999999e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.3e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 5.89e-1

GenotypeQuality
all individuals: 50
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 612
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variant carriers: 0

GenotypeQuality
all individuals: 3367
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variant carriers: 0

African
type: Population
allele count: 34
allele frequency: 3.330721003134796e-3
allele num: 10208
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66430
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.103752759381898e-3
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11540
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16284
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.98e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.387e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

QD
type: SiteQuality
SIO_000300: 1.367e1

VQSLOD
type: SiteQuality
SIO_000300: 5.8e0

DP
type: SiteQuality
SIO_000300: 2.988807e6

ClippingRankSum
type: SiteQuality
SIO_000300: -2.18e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.85e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.62e-1

GenotypeQuality
all individuals: 11
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 394
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variant carriers: 0

GenotypeQuality
all individuals: 7914
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variant carriers: 0

GenotypeQuality
all individuals: 25
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 32935
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variant carriers: 1

GenotypeQuality
all individuals: 23
bin: 7.5e0
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16344
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11540
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10230
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.504438092372499e-5
allele num: 66470
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.641e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.8e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.41e-1

DP
type: SiteQuality
SIO_000300: 2.996751e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -5.37e-1

QD
type: SiteQuality
SIO_000300: 7.39e0

VQSLOD
type: SiteQuality
SIO_000300: -4.728e-1

GenotypeQuality
all individuals: 10
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 71
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GenotypeQuality
all individuals: 3307
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 4324
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 1748
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variant carriers: 0

GenotypeQuality
all individuals: 98
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variant carriers: 0

GenotypeQuality
all individuals: 3388
bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.095330976472023e-5
allele num: 16406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11546
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10248
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66510
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.286e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

MQ
type: SiteQuality
SIO_000300: 5.967e1

DP
type: SiteQuality
SIO_000300: 3.001796e6

VQSLOD
type: SiteQuality
SIO_000300: 1.08e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.53e0

MQRankSum
type: SiteQuality
SIO_000300: 3.33e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.73e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.621e0

GenotypeQuality
all individuals: 341
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
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variant carriers: 0

GenotypeQuality
all individuals: 3264
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
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variant carriers: 0

GenotypeQuality
all individuals: 4324
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1919
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variant carriers: 0

GenotypeQuality
all individuals: 1748
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3388
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32935
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3307
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11546
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66510
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10248
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.095330976472023e-5
allele num: 16406
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.967e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.73e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 3.33e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.53e0

VQSLOD
type: SiteQuality
SIO_000300: 1.08e0

DP
type: SiteQuality
SIO_000300: 3.001796e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.621e0

QD
type: SiteQuality
SIO_000300: 1.286e1

GenotypeQuality
all individuals: 135
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3308
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1903
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 32933
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3389
bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16410
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.661008141347653e-5
allele num: 11546
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10254
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66520
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 6.753e0

VQSLOD
type: SiteQuality
SIO_000300: -1.331e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.214e0

MQRankSum
type: SiteQuality
SIO_000300: 8.72e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.27e0

MQ
type: SiteQuality
SIO_000300: 5.981e1

DP
type: SiteQuality
SIO_000300: 3.00465e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

QD
type: SiteQuality
SIO_000300: 1.775e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.69e0

GenotypeQuality
all individuals: 32936
bin: 9.75e1
variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 6
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GenotypeQuality
all individuals: 6
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GenotypeQuality
all individuals: 1751
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GenotypeQuality
all individuals: 79
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3309
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variant carriers: 0

GenotypeQuality
all individuals: 3259
bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16458
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11548
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155802126675913e-4
allele num: 8652
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66558
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10280
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.600000000000001e-1

MQ
type: SiteQuality
SIO_000300: 5.974e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -5.35e-1

VQSLOD
type: SiteQuality
SIO_000300: -4.311e-1

QD
type: SiteQuality
SIO_000300: 1.86e1

BaseQRankSum
type: SiteQuality
SIO_000300: 9.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

DP
type: SiteQuality
SIO_000300: 3.00957e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.22e-1

GenotypeQuality
all individuals: 15
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variant carriers: 0

GenotypeQuality
all individuals: 164
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3400
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variant carriers: 0

GenotypeQuality
all individuals: 4417
bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11550
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66590
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.21300339640951e-4
allele num: 16488
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 3.01257e6

BaseQRankSum
type: SiteQuality
SIO_000300: -4.27e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.27e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.43e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 5.11e0

QD
type: SiteQuality
SIO_000300: 1.559e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.6e-1

GenotypeQuality
all individuals: 150
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1924
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GenotypeQuality
all individuals: 44
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GenotypeQuality
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GenotypeQuality
all individuals: 39
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 22
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variant carriers: 0

GenotypeQuality
all individuals: 4426
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16488
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11550
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.501636784094663e-5
allele num: 66594
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10330
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.482e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

BaseQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 3.181e0

MQRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 3.012837e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 1.24e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.54e-1

GenotypeQuality
all individuals: 3227
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1899
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3286
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9326
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4401
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1737
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 55
allele frequency: 4.760256188333045e-3
allele num: 11554
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 145
allele frequency: 2.192319322648927e-2
allele num: 6614
num of homozygotes: 3

Other
type: Population
allele count: 13
allele frequency: 1.434878587196468e-2
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 149
allele frequency: 9.031397745181234e-3
allele num: 16498
num of homozygotes: 4

East Asian
type: Population
allele count: 1
allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 28
allele frequency: 2.708454246469337e-3
allele num: 10338
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1045
allele frequency: 1.568598018613029e-2
allele num: 66620
num of homozygotes: 14

ClippingRankSum
type: SiteQuality
SIO_000300: -3.91e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.54e0

MQRankSum
type: SiteQuality
SIO_000300: 2.18e-1

MQ
type: SiteQuality
SIO_000300: 5.971e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.64e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.43e0

DP
type: SiteQuality
SIO_000300: 3.078773e6

FS
type: SiteQuality
SIO_000300: 7.39e-1

QD
type: SiteQuality
SIO_000300: 1.557e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.24e-2

GenotypeQuality
all individuals: 24
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4497
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3370
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 100
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3447
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32570
bin: 9.75e1
variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500555205426008e-5
allele num: 66642
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11554
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10352
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.955e1

VQSLOD
type: SiteQuality
SIO_000300: 1.33e0

FS
type: SiteQuality
SIO_000300: 1.993e0

QD
type: SiteQuality
SIO_000300: 1.598e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 1.0e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.88e-1

DP
type: SiteQuality
SIO_000300: 3.000801e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.1e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.09e0

GenotypeQuality
all individuals: 6
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 95
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4494
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32571
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 24
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9555
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3449
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 4.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.5004651441947e-5
allele num: 66646
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10352
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11554
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.948e1

FS
type: SiteQuality
SIO_000300: 4.868e0

MQRankSum
type: SiteQuality
SIO_000300: 6.43e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.82e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

DP
type: SiteQuality
SIO_000300: 3.00109e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.35e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.261e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.24e0

QD
type: SiteQuality
SIO_000300: 9.710000000000001e0

GenotypeQuality
all individuals: 3370
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32570
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4522
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9682
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variant carriers: 0

GenotypeQuality
all individuals: 3302
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
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variant carriers: 0

GenotypeQuality
all individuals: 1788
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1958
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10396
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.49907057624273e-5
allele num: 66708
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.52e-1

MQ
type: SiteQuality
SIO_000300: 5.934e1

DP
type: SiteQuality
SIO_000300: 3.002852e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.17e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.468e0

FS
type: SiteQuality
SIO_000300: 4.667e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.39e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.51e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.2e-3

QD
type: SiteQuality
SIO_000300: 1.39e1

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4521
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3456
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variant carriers: 0

GenotypeQuality
all individuals: 9695
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3370
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1957
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
all individuals: 3301
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.615384615384615e-5
allele num: 10400
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66718
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 3.003096e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 3.86e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.57e-1

FS
type: SiteQuality
SIO_000300: 3.058e0

MQRankSum
type: SiteQuality
SIO_000300: 1.83e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.811e0

MQ
type: SiteQuality
SIO_000300: 5.966e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.99e-1

QD
type: SiteQuality
SIO_000300: 1.233e1

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9704
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4523
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
all individuals: 1957
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1789
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498756032493031e-5
allele num: 66722
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.68e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.09e-1

DP
type: SiteQuality
SIO_000300: 3.003128e6

FS
type: SiteQuality
SIO_000300: 1.424e0

QD
type: SiteQuality
SIO_000300: 1.357e1

VQSLOD
type: SiteQuality
SIO_000300: 8.55e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.1e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.967e1

MQRankSum
type: SiteQuality
SIO_000300: 9.08e-1

GenotypeQuality
all individuals: 3455
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1957
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3371
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variant carriers: 0

GenotypeQuality
all individuals: 3
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variant carriers: 0

GenotypeQuality
all individuals: 0
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variant carriers: 0

GenotypeQuality
all individuals: 1788
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variant carriers: 0

GenotypeQuality
all individuals: 32571
bin: 9.75e1
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GenotypeQuality
all individuals: 3
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variant carriers: 0

GenotypeQuality
all individuals: 9711
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variant carriers: 0

GenotypeQuality
all individuals: 3300
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66728
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 2.822e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.88e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.069e0

DP
type: SiteQuality
SIO_000300: 3.003163e6

MQRankSum
type: SiteQuality
SIO_000300: 1.52e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.297e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.824e0

MQ
type: SiteQuality
SIO_000300: 5.901e1

QD
type: SiteQuality
SIO_000300: 1.073e1

GenotypeQuality
all individuals: 3
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1957
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3454
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9722
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4526
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3371
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 3.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66736
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.733e1

VQSLOD
type: SiteQuality
SIO_000300: -1.722e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.418e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.73e-1

MQRankSum
type: SiteQuality
SIO_000300: -7.61e-1

DP
type: SiteQuality
SIO_000300: 3.003336e6

QD
type: SiteQuality
SIO_000300: 7.25e0

GenotypeQuality
all individuals: 2
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3454
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
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variant carriers: 0

GenotypeQuality
all individuals: 0
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
all individuals: 32570
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 4525
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498441620714457e-5
allele num: 66736
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.640055296353897e-5
allele num: 11574
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 7.92e-1

FS
type: SiteQuality
SIO_000300: 5.19e-1

QD
type: SiteQuality
SIO_000300: 1.21e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.7e-3

VQSLOD
type: SiteQuality
SIO_000300: 1.91e0

MQ
type: SiteQuality
SIO_000300: 5.961e1

DP
type: SiteQuality
SIO_000300: 3.003692e6

BaseQRankSum
type: SiteQuality
SIO_000300: -3.63e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.16e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.8e-1

GenotypeQuality
all individuals: 3371
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1789
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variant carriers: 0

GenotypeQuality
all individuals: 0
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
all individuals: 3454
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variant carriers: 0

GenotypeQuality
all individuals: 0
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variant carriers: 0

GenotypeQuality
all individuals: 3301
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32570
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 3.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498441620714457e-5
allele num: 66736
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

South Asian
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allele count: 0
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African
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East Asian
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Other
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ReadPosRankSum
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MQ
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MQRankSum
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VQSLOD
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DP
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FS
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InbreedingCoeff
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BaseQRankSum
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QD
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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South Asian
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East Asian
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African
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European (Finnish)
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Other
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FS
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VQSLOD
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ReadPosRankSum
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QD
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MQRankSum
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MQ
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BaseQRankSum
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InbreedingCoeff
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DP
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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African
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Other
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South Asian
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European (Non-Finnish)
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East Asian
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Latino
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FS
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MQRankSum
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DP
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InbreedingCoeff
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ClippingRankSum
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QD
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MQ
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BaseQRankSum
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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Other
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European (Non-Finnish)
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allele num: 66728
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African
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South Asian
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Latino
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East Asian
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BaseQRankSum
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MQRankSum
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FS
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SIO_000300: 4.992e0

InbreedingCoeff
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VQSLOD
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DP
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MQ
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QD
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ClippingRankSum
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SIO_000300: 2.84e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.429999999999999e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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African
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allele frequency: 4.806767929244376e-4
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East Asian
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European (Non-Finnish)
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European (Finnish)
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Latino
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Other
type: Population
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MQ
type: SiteQuality
SIO_000300: 5.975e1

MQRankSum
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InbreedingCoeff
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DP
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FS
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ReadPosRankSum
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ClippingRankSum
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QD
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VQSLOD
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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African
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South Asian
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Latino
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European (Non-Finnish)
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East Asian
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European (Finnish)
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InbreedingCoeff
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MQRankSum
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VQSLOD
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DP
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BaseQRankSum
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FS
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QD
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MQ
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ClippingRankSum
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele num: 66700
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Other
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Latino
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East Asian
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African
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South Asian
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European (Finnish)
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BaseQRankSum
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MQ
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MQRankSum
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VQSLOD
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InbreedingCoeff
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ReadPosRankSum
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DP
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QD
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FS
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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African
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East Asian
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Other
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European (Finnish)
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Latino
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DP
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MQ
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ReadPosRankSum
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InbreedingCoeff
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ClippingRankSum
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FS
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BaseQRankSum
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QD
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VQSLOD
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MQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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European (Non-Finnish)
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Other
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East Asian
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African
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South Asian
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ClippingRankSum
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VQSLOD
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ReadPosRankSum
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InbreedingCoeff
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QD
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FS
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DP
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MQ
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BaseQRankSum
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MQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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Latino
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African
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East Asian
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European (Non-Finnish)
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South Asian
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ClippingRankSum
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QD
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DP
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InbreedingCoeff
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MQ
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MQRankSum
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VQSLOD
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FS
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BaseQRankSum
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ReadPosRankSum
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32561
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 3296
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9314
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3373
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1949
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1784
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 4.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10394
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.000930288389401e-5
allele num: 66646
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.067961165048543e-5
allele num: 16480
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.12e0

VQSLOD
type: SiteQuality
SIO_000300: 1.82e0

DP
type: SiteQuality
SIO_000300: 2.9989e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.1e-3

QD
type: SiteQuality
SIO_000300: 1.668e1

FS
type: SiteQuality
SIO_000300: 3.796e0

MQRankSum
type: SiteQuality
SIO_000300: 1.35e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.04e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.506e0

MQ
type: SiteQuality
SIO_000300: 6.095e1

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3373
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 32558
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 3453
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 246
bin: 2.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16472
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.501935832407936e-5
allele num: 66638
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10392
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 6.42e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.267e-1

MQ
type: SiteQuality
SIO_000300: 5.967e1

FS
type: SiteQuality
SIO_000300: 6.002e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.72e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.96e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.3e-3

DP
type: SiteQuality
SIO_000300: 2.997784e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.59e-1

QD
type: SiteQuality
SIO_000300: 7.71e0