1-1007431-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1007431
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 1007431
    reference: chr 1
allele count: 0
allele frequency: 0.0e0
allele num: 9310
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000237330
  ensembl protein: ENSP00000410533
  ensembl transcript: ENST00000453464
  gene symbol: RNF223
  hgvsc: ENST00000453464.2:c.516G>A
  hgvsp: ENST00000453464.2:c.516G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/40020
canonical: true
consequence: synonymous
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1108
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 969
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1019
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1184
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2037
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 190
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1097
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 464
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 276
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 185
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2010
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 522
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 368
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1377
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 9.75e1
  variant carriers: 0
hgvs: p.Ala172Ala
num of homozygotes: 0
population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 168
  num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 84
  num of homozygotes: 0
population: South Asian
population: Other
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff

1-1007432-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1007432
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 1007432
    reference: chr 1
allele count: 5532
allele frequency: 5.720785935884178e-1
allele num: 9670
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000237330
  ensembl protein: ENSP00000410533
  ensembl transcript: ENST00000453464
  gene symbol: RNF223
  hgvsc: ENST00000453464.2:c.515C>T
  hgvsp: ENSP00000410533.1:p.Ala172Val
  variant of: http://identifiers.org/hgnc/40020
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1050
  bin: 1.75e1
  variant carriers: 819
genotype depth: GenotypeDepth
  all individuals: 977
  bin: 2.25e1
  variant carriers: 752
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.25e1
  variant carriers: 56
genotype depth: GenotypeDepth
  all individuals: 978
  bin: 2.5e0
  variant carriers: 324
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 5.75e1
  variant carriers: 31
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 7.5e0
  variant carriers: 249
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 3.75e1
  variant carriers: 294
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 3.25e1
  variant carriers: 413
genotype depth: GenotypeDepth
  all individuals: 798
  bin: 2.75e1
  variant carriers: 637
genotype depth: GenotypeDepth
  all individuals: 920
  bin: 1.25e1
  variant carriers: 610
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 4.25e1
  variant carriers: 180
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 4.75e1
  variant carriers: 112
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 4.25e1
  variant carriers: 71
genotype quality: GenotypeQuality
  all individuals: 380
  bin: 2.25e1
  variant carriers: 58
genotype quality: GenotypeQuality
  all individuals: 146
  bin: 7.75e1
  variant carriers: 144
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 1.75e1
  variant carriers: 50
genotype quality: GenotypeQuality
  all individuals: 211
  bin: 3.25e1
  variant carriers: 77
genotype quality: GenotypeQuality
  all individuals: 782
  bin: 7.5e0
  variant carriers: 238
genotype quality: GenotypeQuality
  all individuals: 130
  bin: 8.25e1
  variant carriers: 130
genotype quality: GenotypeQuality
  all individuals: 149
  bin: 5.25e1
  variant carriers: 146
genotype quality: GenotypeQuality
  all individuals: 417
  bin: 6.25e1
  variant carriers: 128
genotype quality: GenotypeQuality
  all individuals: 150
  bin: 4.75e1
  variant carriers: 133
genotype quality: GenotypeQuality
  all individuals: 2578
  bin: 9.75e1
  variant carriers: 2578
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 8.75e1
  variant carriers: 76
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 1.25e1
  variant carriers: 89
genotype quality: GenotypeQuality
  all individuals: 157
  bin: 2.75e1
  variant carriers: 42
genotype quality: GenotypeQuality
  all individuals: 156
  bin: 6.75e1
  variant carriers: 133
genotype quality: GenotypeQuality
  all individuals: 176
  bin: 2.5e0
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 172
  bin: 3.75e1
  variant carriers: 98
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 5.75e1
  variant carriers: 84
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 9.25e1
  variant carriers: 118
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 7.25e1
  variant carriers: 100
hgvs: p.Ala172Val
num of homozygotes: 1619
population: South Asian
  type: Population
  allele count: 3843
  allele frequency: 5.623353819139596e-1
  allele num: 6834
  num of homozygotes: 1114
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: NaN
  allele num: 0
  num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: QD

1-1007433-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1007433
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 1007433
    reference: chr 1
allele count: 20
allele frequency: 2.101723413198823e-3
allele num: 9516
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000237330
  ensembl protein: ENSP00000410533
  ensembl transcript: ENST00000453464
  gene symbol: RNF223
  hgvsc: ENST00000453464.2:c.514G>A
  hgvsp: ENSP00000410533.1:p.Ala172Thr
  variant of: http://identifiers.org/hgnc/40020
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1252
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1866
  bin: 2.5e0
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 418
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1234
  bin: 2.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
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  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
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  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
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genotype depth: GenotypeDepth
  all individuals: 324
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  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 940
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 9.25e1
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 2.5e0
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genotype quality: GenotypeQuality
  all individuals: 218
  bin: 4.25e1
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genotype quality: GenotypeQuality
  all individuals: 478
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 8.25e1
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genotype quality: GenotypeQuality
  all individuals: 150
  bin: 1.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 9.75e1
  variant carriers: 20
genotype quality: GenotypeQuality
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  bin: 7.5e0
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genotype quality: GenotypeQuality
  all individuals: 293
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 89
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  variant carriers: 3
hgvs: p.Ala172Thr
num of homozygotes: 0
population: Other
  type: Population
  allele count: 1
  allele frequency: 9.433962264150943e-3
  allele num: 106
  num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 126
  num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
reference allele: C
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum

1-1007437-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1007437
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 1007437
    reference: chr 1
allele count: 1
allele frequency: 1.056635672020287e-4
allele num: 9464
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000237330
  ensembl protein: ENSP00000410533
  ensembl transcript: ENST00000453464
  gene symbol: RNF223
  hgvsc: ENST00000453464.2:c.510G>A
  hgvsp: ENST00000453464.2:c.510G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/40020
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1262
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 425
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genotype depth: GenotypeDepth
  all individuals: 2
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genotype depth: GenotypeDepth
  all individuals: 0
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1306
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1006
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 689
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 7.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 6.25e1
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genotype quality: GenotypeQuality
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  bin: 2.5e0
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genotype quality: GenotypeQuality
  all individuals: 1942
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 1.25e1
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genotype quality: GenotypeQuality
  all individuals: 108
  bin: 1.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 283
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Pro170Pro
num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: NaN
  allele num: 0
  num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 1
  allele frequency: 1.492091912861832e-4
  allele num: 6702
  num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: Other
population: East Asian
reference allele: C
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum

1-1007448-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1007448
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 1007448
    reference: chr 1
allele count: 3
allele frequency: 3.073770491803279e-4
allele num: 9760
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000237330
  ensembl protein: ENSP00000410533
  ensembl transcript: ENST00000453464
  gene symbol: RNF223
  hgvsc: ENST00000453464.2:c.499C>A
  hgvsp: ENSP00000410533.1:p.Pro167Thr
  variant of: http://identifiers.org/hgnc/40020
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1441
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2145
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 618
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Pro167Thr
num of homozygotes: 0
population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 174
  num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 108
  num of homozygotes: 0
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum

1-1007463-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1007463
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 1007463
    reference: chr 1
allele count: 6
allele frequency: 5.984440454817474e-4
allele num: 10026
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000237330
  ensembl protein: ENSP00000410533
  ensembl transcript: ENST00000453464
  gene symbol: RNF223
  hgvsc: ENST00000453464.2:c.484G>A
  hgvsp: ENSP00000410533.1:p.Val162Met
  variant of: http://identifiers.org/hgnc/40020
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
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  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Val162Met
num of homozygotes: 1
population: Other
  type: Population
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  allele frequency: 0.0e0
  allele num: 110
  num of homozygotes: 0
population: Latino
  type: Population
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  allele num: 88
  num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
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1-1007481-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1007481
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 1007481
    reference: chr 1
allele count: 1
allele frequency: 9.765625000000001e-5
allele num: 10240
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000237330
  ensembl protein: ENSP00000410533
  ensembl transcript: ENST00000453464
  gene symbol: RNF223
  hgvsc: ENST00000453464.2:c.466G>C
  hgvsp: ENSP00000410533.1:p.Gly156Arg
  variant of: http://identifiers.org/hgnc/40020
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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hgvs: p.Gly156Arg
num of homozygotes: 0
population: African
  type: Population
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  allele frequency: 0.0e0
  allele num: 184
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population: European (Finnish)
  type: Population
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  allele frequency: NaN
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  num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Latino
population: East Asian
population: Other
reference allele: C
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
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1-1007481-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1007481
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 1007481
    reference: chr 1
allele count: 1
allele frequency: 9.765625000000001e-5
allele num: 10240
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000237330
  ensembl protein: ENSP00000410533
  ensembl transcript: ENST00000453464
  gene symbol: RNF223
  hgvsc: ENST00000453464.2:c.466G>A
  hgvsp: ENSP00000410533.1:p.Gly156Ser
  variant of: http://identifiers.org/hgnc/40020
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1857
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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hgvs: p.Gly156Ser
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population: East Asian
  type: Population
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  allele num: 130
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population: Latino
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  num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: African
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
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site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum

1-1007489-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1007489
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 1007489
    reference: chr 1
allele count: 1
allele frequency: 9.72951936174353e-5
allele num: 10278
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000237330
  ensembl protein: ENSP00000410533
  ensembl transcript: ENST00000453464
  gene symbol: RNF223
  hgvsc: ENST00000453464.2:c.458G>A
  hgvsp: ENSP00000410533.1:p.Arg153His
  variant of: http://identifiers.org/hgnc/40020
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
hgvs: p.Arg153His
num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 1
  allele frequency: 1.383125864453665e-4
  allele num: 7230
  num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 132
  num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff

1-1007531-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1007531
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 1007531
    reference: chr 1
allele count: 1
allele frequency: 1.009896990506968e-4
allele num: 9902
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000237330
  ensembl protein: ENSP00000410533
  ensembl transcript: ENST00000453464
  gene symbol: RNF223
  hgvsc: ENST00000453464.2:c.416G>A
  hgvsp: ENSP00000410533.1:p.Gly139Asp
  variant of: http://identifiers.org/hgnc/40020
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1864
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2349
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1310
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1158
  bin: 7.5e0
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genotype quality: GenotypeQuality
  all individuals: 57
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 165
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.25e1
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genotype quality: GenotypeQuality
  all individuals: 21
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genotype quality: GenotypeQuality
  all individuals: 26
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 7.25e1
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genotype quality: GenotypeQuality
  all individuals: 3802
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 426
  bin: 6.75e1
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genotype quality: GenotypeQuality
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 558
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Gly139Asp
num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 1
  allele frequency: 1.433897332950961e-4
  allele num: 6974
  num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 2418
  num of homozygotes: 0
population: African
population: Other
population: Latino
population: European (Finnish)
population: East Asian
reference allele: C
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum

1-1007556-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1007556
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 1007556
    reference: chr 1
allele count: 1
allele frequency: 1.148633126579371e-4
allele num: 8706
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000237330
  ensembl protein: ENSP00000410533
  ensembl transcript: ENST00000453464
  gene symbol: RNF223
  hgvsc: ENST00000453464.2:c.391C>T
  hgvsp: ENSP00000410533.1:p.Arg131Cys
  variant of: http://identifiers.org/hgnc/40020
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1017
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 904
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1567
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1362
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  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1597
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2395
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 167
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1429
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 209
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 3
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  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 287
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  variant carriers: 0
hgvs: p.Arg131Cys
num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: NaN
  allele num: 0
  num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 6118
  num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Other
population: Latino
population: East Asian
reference allele: G
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: QD

1-1007558-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1007558
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 1007558
    reference: chr 1
allele count: 1
allele frequency: 1.172058134083451e-4
allele num: 8532
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000237330
  ensembl protein: ENSP00000410533
  ensembl transcript: ENST00000453464
  gene symbol: RNF223
  hgvsc: ENST00000453464.2:c.389G>A
  hgvsp: ENSP00000410533.1:p.Arg130Gln
  variant of: http://identifiers.org/hgnc/40020
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1267
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1117
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 976
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 346
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.25e1
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genotype depth: GenotypeDepth
  all individuals: 0
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 253
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 3
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genotype quality: GenotypeQuality
  all individuals: 2
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  variant carriers: 0
hgvs: p.Arg130Gln
num of homozygotes: 0
population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 164
  num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 1
  allele frequency: 1.671122994652406e-4
  allele num: 5984
  num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Other
population: Latino
reference allele: C
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: ReadPosRankSum

1-1007559-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1007559
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 1007559
    reference: chr 1
allele count: 11
allele frequency: 1.295947219604147e-3
allele num: 8488
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000237330
  ensembl protein: ENSP00000410533
  ensembl transcript: ENST00000453464
  gene symbol: RNF223
  hgvsc: ENST00000453464.2:c.388C>G
  hgvsp: ENSP00000410533.1:p.Arg130Gly
  variant of: http://identifiers.org/hgnc/40020
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1338
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genotype depth: GenotypeDepth
  all individuals: 1617
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 1118
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2303
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1503
  bin: 7.5e0
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 9.75e1
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genotype quality: GenotypeQuality
  all individuals: 46
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genotype quality: GenotypeQuality
  all individuals: 16
  bin: 1.25e1
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genotype quality: GenotypeQuality
  all individuals: 209
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  variant carriers: 0
hgvs: p.Arg130Gly
num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: NaN
  allele num: 0
  num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 98
  num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: FS
site quality: QD

1-1007567-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1007567
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 1007567
    reference: chr 1
allele count: 1
allele frequency: 1.259128682951398e-4
allele num: 7942
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000237330
  ensembl protein: ENSP00000410533
  ensembl transcript: ENST00000453464
  gene symbol: RNF223
  hgvsc: ENST00000453464.2:c.380C>T
  hgvsp: ENSP00000410533.1:p.Ala127Val
  variant of: http://identifiers.org/hgnc/40020
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1545
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1618
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Ala127Val
num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: NaN
  allele num: 0
  num of homozygotes: 0
population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 162
  num of homozygotes: 0
population: East Asian
population: Other
population: South Asian
population: European (Non-Finnish)
population: Latino
reference allele: G
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ

1-1007570-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1007570
    reference: chr 1
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    type: ExactPosition
    position: 1007570
    reference: chr 1
allele count: 2
allele frequency: 2.579313902501935e-4
allele num: 7754
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000237330
  ensembl protein: ENSP00000410533
  ensembl transcript: ENST00000453464
  gene symbol: RNF223
  hgvsc: ENST00000453464.2:c.377C>T
  hgvsp: ENSP00000410533.1:p.Pro126Leu
  variant of: http://identifiers.org/hgnc/40020
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Pro126Leu
num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: NaN
  allele num: 0
  num of homozygotes: 0
population: Latino
  type: Population
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  allele frequency: 0.0e0
  allele num: 74
  num of homozygotes: 0
population: African
population: Other
population: South Asian
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD

1-1007608-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1007608
    reference: chr 1
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    type: ExactPosition
    position: 1007608
    reference: chr 1
allele count: 9
allele frequency: 2.730582524271845e-3
allele num: 3296
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000237330
  ensembl protein: ENSP00000410533
  ensembl transcript: ENST00000453464
  gene symbol: RNF223
  hgvsc: ENST00000453464.2:c.339C>T
  hgvsp: ENST00000453464.2:c.339C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/40020
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Pro113Pro
num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: NaN
  allele num: 0
  num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 718
  num of homozygotes: 0
population: Other
population: Latino
population: African
population: East Asian
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
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1-1007610-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1007610
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 1007610
    reference: chr 1
allele count: 1
allele frequency: 4.15973377703827e-4
allele num: 2404
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000237330
  ensembl protein: ENSP00000410533
  ensembl transcript: ENST00000453464
  gene symbol: RNF223
  hgvsc: ENST00000453464.2:c.337C>G
  hgvsp: ENSP00000410533.1:p.Pro113Ala
  variant of: http://identifiers.org/hgnc/40020
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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hgvs: p.Pro113Ala
num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 482
  num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: NaN
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  num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: South Asian
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
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site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD

1-1007617-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1007617
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 1007617
    reference: chr 1
allele count: 0
allele frequency: 0.0e0
allele num: 2060
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000237330
  ensembl protein: ENSP00000410533
  ensembl transcript: ENST00000453464
  gene symbol: RNF223
  hgvsc: ENST00000453464.2:c.330C>T
  hgvsp: ENST00000453464.2:c.330C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/40020
canonical: true
consequence: synonymous
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
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  bin: 7.5e0
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 8.25e1
  variant carriers: 0
hgvs: p.Ala110Ala
num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: NaN
  allele num: 0
  num of homozygotes: 0
population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 48
  num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP

1-1007623-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1007623
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 1007623
    reference: chr 1
allele count: 2
allele frequency: 1.658374792703151e-3
allele num: 1206
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000237330
  ensembl protein: ENSP00000410533
  ensembl transcript: ENST00000453464
  gene symbol: RNF223
  hgvsc: ENST00000453464.2:c.324G>A
  hgvsp: ENST00000453464.2:c.324G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/40020
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Pro108Pro
num of homozygotes: 1
population: South Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 910
  num of homozygotes: 0
population: Latino
  type: Population
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  allele frequency: 0.0e0
  allele num: 14
  num of homozygotes: 0
population: East Asian
population: Other
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP

1-1007628-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1007628
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 1007628
    reference: chr 1
allele count: 0
allele frequency: 0.0e0
allele num: 808
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000237330
  ensembl protein: ENSP00000410533
  ensembl transcript: ENST00000453464
  gene symbol: RNF223
  hgvsc: ENST00000453464.2:c.319G>A
  hgvsp: ENSP00000410533.1:p.Val107Met
  variant of: http://identifiers.org/hgnc/40020
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
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  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Val107Met
num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 12
  num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: NaN
  allele num: 0
  num of homozygotes: 0
population: African
population: Other
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: C
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum

1-1007633-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1007633
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 1007633
    reference: chr 1
allele count: 0
allele frequency: 0.0e0
allele num: 564
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000237330
  ensembl protein: ENSP00000410533
  ensembl transcript: ENST00000453464
  gene symbol: RNF223
  hgvsc: ENST00000453464.2:c.314C>T
  hgvsp: ENSP00000410533.1:p.Thr105Met
  variant of: http://identifiers.org/hgnc/40020
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Thr105Met
num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: NaN
  allele num: 0
  num of homozygotes: 0
population: East Asian
  type: Population
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  allele frequency: 0.0e0
  allele num: 6
  num of homozygotes: 0
population: Latino
population: South Asian
population: Other
population: African
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: ClippingRankSum

1-1007698-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1007698
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 1007698
    reference: chr 1
allele count: 0
allele frequency: 0.0e0
allele num: 84
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000237330
  ensembl protein: ENSP00000410533
  ensembl transcript: ENST00000453464
  gene symbol: RNF223
  hgvsc: ENST00000453464.2:c.249G>A
  hgvsp: ENST00000453464.2:c.249G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/40020
canonical: true
consequence: synonymous
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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hgvs: p.Ala83Ala
num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: NaN
  allele num: 0
  num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 22
  num of homozygotes: 0
population: East Asian
population: Other
population: Latino
population: African
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: ClippingRankSum

1-1007699-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1007699
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 1007699
    reference: chr 1
allele count: 0
allele frequency: 0.0e0
allele num: 82
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000237330
  ensembl protein: ENSP00000410533
  ensembl transcript: ENST00000453464
  gene symbol: RNF223
  hgvsc: ENST00000453464.2:c.248C>T
  hgvsp: ENSP00000410533.1:p.Ala83Val
  variant of: http://identifiers.org/hgnc/40020
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Ala83Val
num of homozygotes: 0
population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 4
  num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 54
  num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum

1-1007706-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1007706
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 1007706
    reference: chr 1
allele count: 0
allele frequency: 0.0e0
allele num: 100
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000237330
  ensembl protein: ENSP00000410533
  ensembl transcript: ENST00000453464
  gene symbol: RNF223
  hgvsc: ENST00000453464.2:c.241C>T
  hgvsp: ENSP00000410533.1:p.Arg81Trp
  variant of: http://identifiers.org/hgnc/40020
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Arg81Trp
num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 24
  num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 64
  num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD

1-1007708-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1007708
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 1007708
    reference: chr 1
allele count: 1
allele frequency: 9.433962264150943e-3
allele num: 106
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000237330
  ensembl protein: ENSP00000410533
  ensembl transcript: ENST00000453464
  gene symbol: RNF223
  hgvsc: ENST00000453464.2:c.239C>T
  hgvsp: ENSP00000410533.1:p.Ala80Val
  variant of: http://identifiers.org/hgnc/40020
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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hgvs: p.Ala80Val
num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: NaN
  allele num: 0
  num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 24
  num of homozygotes: 0
population: East Asian
population: African
population: Other
population: European (Finnish)
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: QD
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site quality: BaseQRankSum

1-1007730-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1007730
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 1007730
    reference: chr 1
allele count: 0
allele frequency: 0.0e0
allele num: 132
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000237330
  ensembl protein: ENSP00000410533
  ensembl transcript: ENST00000453464
  gene symbol: RNF223
  hgvsc: ENST00000453464.2:c.217G>A
  hgvsp: ENSP00000410533.1:p.Val73Ile
  variant of: http://identifiers.org/hgnc/40020
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Val73Ile
num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 36
  num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 78
  num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
population: Other
population: African
reference allele: C
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum

1-1007765-ATGT-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1007765
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 1007762
    reference: chr 1
allele count: 0
allele frequency: 0.0e0
allele num: 348
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000237330
  ensembl protein: ENSP00000410533
  ensembl transcript: ENST00000453464
  gene symbol: RNF223
  hgvsc: ENST00000453464.2:c.179_181delACA
  hgvsp: ENSP00000410533.1:p.Asn60del
  variant of: http://identifiers.org/hgnc/40020
canonical: true
consequence: inframe deletion
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 8.75e1
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genotype quality: GenotypeQuality
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  bin: 3.25e1
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genotype quality: GenotypeQuality
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  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 270
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 6.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 2.25e1
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genotype quality: GenotypeQuality
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  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
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  variant carriers: 1
hgvs: p.Asn60del
num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 2
  num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 82
  num of homozygotes: 0
population: Other
population: East Asian
population: South Asian
population: African
population: European (Finnish)
reference allele: ATGT
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum

1-1007802-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1007802
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 1007802
    reference: chr 1
allele count: 0
allele frequency: 0.0e0
allele num: 1236
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000237330
  ensembl protein: ENSP00000410533
  ensembl transcript: ENST00000453464
  gene symbol: RNF223
  hgvsc: ENST00000453464.2:c.145C>G
  hgvsp: ENSP00000410533.1:p.Leu49Val
  variant of: http://identifiers.org/hgnc/40020
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 2.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 6.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 3.75e1
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 12
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hgvs: p.Leu49Val
num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 12
  num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: NaN
  allele num: 0
  num of homozygotes: 0
population: East Asian
population: African
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: DP

1-1007803-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1007803
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 1007803
    reference: chr 1
allele count: 2
allele frequency: 1.531393568147014e-3
allele num: 1306
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000237330
  ensembl protein: ENSP00000410533
  ensembl transcript: ENST00000453464
  gene symbol: RNF223
  hgvsc: ENST00000453464.2:c.144C>G
  hgvsp: ENST00000453464.2:c.144C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/40020
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
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genotype depth: GenotypeDepth
  all individuals: 0
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genotype depth: GenotypeDepth
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  variant carriers: 2
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1
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hgvs: p.Pro48Pro
num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 16
  num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: NaN
  allele num: 0
  num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD

1-1007805-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1007805
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 1007805
    reference: chr 1
allele count: 0
allele frequency: 0.0e0
allele num: 1412
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000237330
  ensembl protein: ENSP00000410533
  ensembl transcript: ENST00000453464
  gene symbol: RNF223
  hgvsc: ENST00000453464.2:c.142C>T
  hgvsp: ENSP00000410533.1:p.Pro48Ser
  variant of: http://identifiers.org/hgnc/40020
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 3292
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  variant carriers: 0
hgvs: p.Pro48Ser
num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 18
  num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: NaN
  allele num: 0
  num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: MQ
site quality: DP

1-1007814-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1007814
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 1007814
    reference: chr 1
allele count: 0
allele frequency: 0.0e0
allele num: 1812
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000237330
  ensembl protein: ENSP00000410533
  ensembl transcript: ENST00000453464
  gene symbol: RNF223
  hgvsc: ENST00000453464.2:c.133G>A
  hgvsp: ENSP00000410533.1:p.Val45Met
  variant of: http://identifiers.org/hgnc/40020
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 3779
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 82
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  variant carriers: 0
hgvs: p.Val45Met
num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 22
  num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 434
  num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD

1-1007820-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1007820
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 1007820
    reference: chr 1
allele count: 0
allele frequency: 0.0e0
allele num: 2196
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000237330
  ensembl protein: ENSP00000410533
  ensembl transcript: ENST00000453464
  gene symbol: RNF223
  hgvsc: ENST00000453464.2:c.127G>A
  hgvsp: ENSP00000410533.1:p.Glu43Lys
  variant of: http://identifiers.org/hgnc/40020
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
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  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 2.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 2.25e1
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genotype quality: GenotypeQuality
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  bin: 1.75e1
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 3.75e1
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genotype quality: GenotypeQuality
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  bin: 7.25e1
  variant carriers: 0
hgvs: p.Glu43Lys
num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 542
  num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 80
  num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Latino
population: Other
population: African
reference allele: C
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum

1-1007821-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1007821
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 1007821
    reference: chr 1
allele count: 0
allele frequency: 0.0e0
allele num: 2254
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000237330
  ensembl protein: ENSP00000410533
  ensembl transcript: ENST00000453464
  gene symbol: RNF223
  hgvsc: ENST00000453464.2:c.126G>A
  hgvsp: ENST00000453464.2:c.126G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/40020
canonical: true
consequence: synonymous
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 3766
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Ser42Ser
num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 18
  num of homozygotes: 0
population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 66
  num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: C
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: MQRankSum

1-1007825-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1007825
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 1007825
    reference: chr 1
allele count: 11
allele frequency: 4.368546465448769e-3
allele num: 2518
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000237330
  ensembl protein: ENSP00000410533
  ensembl transcript: ENST00000453464
  gene symbol: RNF223
  hgvsc: ENST00000453464.2:c.122G>A
  hgvsp: ENSP00000410533.1:p.Gly41Asp
  variant of: http://identifiers.org/hgnc/40020
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Gly41Asp
num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 26
  num of homozygotes: 0
population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 66
  num of homozygotes: 0
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: MQ

1-1007834-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1007834
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 1007834
    reference: chr 1
allele count: 3
allele frequency: 8.823529411764706e-4
allele num: 3400
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000237330
  ensembl protein: ENSP00000410533
  ensembl transcript: ENST00000453464
  gene symbol: RNF223
  hgvsc: ENST00000453464.2:c.113G>A
  hgvsp: ENSP00000410533.1:p.Gly38Asp
  variant of: http://identifiers.org/hgnc/40020
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 50
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hgvs: p.Gly38Asp
num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 110
  num of homozygotes: 0
population: African
  type: Population
  allele count: 3
  allele frequency: 2.830188679245283e-2
  allele num: 106
  num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
reference allele: C
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD

1-1007837-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1007837
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 1007837
    reference: chr 1
allele count: 1
allele frequency: 2.600104004160167e-4
allele num: 3846
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000237330
  ensembl protein: ENSP00000410533
  ensembl transcript: ENST00000453464
  gene symbol: RNF223
  hgvsc: ENST00000453464.2:c.110C>G
  hgvsp: ENSP00000410533.1:p.Pro37Arg
  variant of: http://identifiers.org/hgnc/40020
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3581
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 5.75e1
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.5e0
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genotype quality: GenotypeQuality
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  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 896
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 190
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 6.25e1
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genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Pro37Arg
num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 116
  num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 2564
  num of homozygotes: 0
population: African
population: Latino
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD

1-1007854-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1007854
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 1007854
    reference: chr 1
allele count: 10
allele frequency: 1.747640685075148e-3
allele num: 5722
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000237330
  ensembl protein: ENSP00000410533
  ensembl transcript: ENST00000453464
  gene symbol: RNF223
  hgvsc: ENST00000453464.2:c.93C>T
  hgvsp: ENST00000453464.2:c.93C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/40020
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11042
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.25e1
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genotype depth: GenotypeDepth
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  variant carriers: 3
genotype depth: GenotypeDepth
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  bin: 3.75e1
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genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
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  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
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  bin: 7.5e0
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.5e0
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 4.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 6.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 8
hgvs: p.Ala31Ala
num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 126
  num of homozygotes: 0
population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 164
  num of homozygotes: 0
population: European (Finnish)
population: Latino
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: MQ

1-1007855-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1007855
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 1007855
    reference: chr 1
allele count: 0
allele frequency: 0.0e0
allele num: 5868
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000237330
  ensembl protein: ENSP00000410533
  ensembl transcript: ENST00000453464
  gene symbol: RNF223
  hgvsc: ENST00000453464.2:c.92C>T
  hgvsp: ENSP00000410533.1:p.Ala31Val
  variant of: http://identifiers.org/hgnc/40020
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.75e1
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.5e0
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 6.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Ala31Val
num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 124
  num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 2
  num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
population: Other
reference allele: G
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD

1-1007857-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1007857
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 1007857
    reference: chr 1
allele count: 0
allele frequency: 0.0e0
allele num: 6204
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000237330
  ensembl protein: ENSP00000410533
  ensembl transcript: ENST00000453464
  gene symbol: RNF223
  hgvsc: ENST00000453464.2:c.90G>A
  hgvsp: ENST00000453464.2:c.90G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/40020
canonical: true
consequence: synonymous
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2843
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1820
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 765
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 54
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hgvs: p.Ser30Ser
num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 52
  num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 82
  num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD

1-1007866-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1007866
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 1007866
    reference: chr 1
allele count: 1
allele frequency: 1.3430029546065e-4
allele num: 7446
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000237330
  ensembl protein: ENSP00000410533
  ensembl transcript: ENST00000453464
  gene symbol: RNF223
  hgvsc: ENST00000453464.2:c.81C>T
  hgvsp: ENST00000453464.2:c.81C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/40020
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2550
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 1
hgvs: p.Ser27Ser
num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 5028
  num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 62
  num of homozygotes: 0
population: Other
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP

1-1007897-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1007897
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 1007897
    reference: chr 1
allele count: 1
allele frequency: 1.194172438500119e-4
allele num: 8374
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000237330
  ensembl protein: ENSP00000410533
  ensembl transcript: ENST00000453464
  gene symbol: RNF223
  hgvsc: ENST00000453464.2:c.50G>A
  hgvsp: ENSP00000410533.1:p.Arg17Gln
  variant of: http://identifiers.org/hgnc/40020
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 2827
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 9.75e1
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genotype quality: GenotypeQuality
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  bin: 1.25e1
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genotype quality: GenotypeQuality
  all individuals: 2169
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 131
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 905
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.75e1
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genotype quality: GenotypeQuality
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  bin: 1.75e1
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genotype quality: GenotypeQuality
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  bin: 7.5e0
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genotype quality: GenotypeQuality
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  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 165
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3008
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Arg17Gln
num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: NaN
  allele num: 0
  num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 136
  num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: C
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum

1-1007898-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1007898
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 1007898
    reference: chr 1
allele count: 2
allele frequency: 2.386065378191362e-4
allele num: 8382
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000237330
  ensembl protein: ENSP00000410533
  ensembl transcript: ENST00000453464
  gene symbol: RNF223
  hgvsc: ENST00000453464.2:c.49C>T
  hgvsp: ENSP00000410533.1:p.Arg17Trp
  variant of: http://identifiers.org/hgnc/40020
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2805
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 593
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2056
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.75e1
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.25e1
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genotype quality: GenotypeQuality
  all individuals: 145
  bin: 2.75e1
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genotype quality: GenotypeQuality
  all individuals: 2992
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 896
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6717
  bin: 7.5e0
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 2.25e1
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genotype quality: GenotypeQuality
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  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 28
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Arg17Trp
num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 2132
  num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 72
  num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: Other
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff

1-1007900-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1007900
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 1007900
    reference: chr 1
allele count: 1
allele frequency: 1.197318007662835e-4
allele num: 8352
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000237330
  ensembl protein: ENSP00000410533
  ensembl transcript: ENST00000453464
  gene symbol: RNF223
  hgvsc: ENST00000453464.2:c.47G>A
  hgvsp: ENSP00000410533.1:p.Arg16His
  variant of: http://identifiers.org/hgnc/40020
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 2775
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 618
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2044
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 161
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genotype quality: GenotypeQuality
  all individuals: 2960
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 61
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Arg16His
num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 1
  allele frequency: 4.708097928436911e-4
  allele num: 2124
  num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 90
  num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Latino
population: African
population: South Asian
reference allele: C
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD

1-1007901-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1007901
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 1007901
    reference: chr 1
allele count: 1
allele frequency: 1.194457716196847e-4
allele num: 8372
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000237330
  ensembl protein: ENSP00000410533
  ensembl transcript: ENST00000453464
  gene symbol: RNF223
  hgvsc: ENST00000453464.2:c.46C>T
  hgvsp: ENSP00000410533.1:p.Arg16Cys
  variant of: http://identifiers.org/hgnc/40020
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2047
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2768
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.25e1
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 41
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2184
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Arg16Cys
num of homozygotes: 0
population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 294
  num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 74
  num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: DP

1-1007917-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1007917
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 1007917
    reference: chr 1
allele count: 1
allele frequency: 1.249687578105474e-4
allele num: 8002
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000237330
  ensembl protein: ENSP00000410533
  ensembl transcript: ENST00000453464
  gene symbol: RNF223
  hgvsc: ENST00000453464.2:c.30G>A
  hgvsp: ENST00000453464.2:c.30G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/40020
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 841
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 617
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6467
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.75e1
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genotype depth: GenotypeDepth
  all individuals: 0
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.5e0
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genotype quality: GenotypeQuality
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  bin: 8.25e1
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genotype quality: GenotypeQuality
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  bin: 3.25e1
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genotype quality: GenotypeQuality
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  bin: 4.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 7.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 4.25e1
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genotype quality: GenotypeQuality
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  bin: 3.75e1
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genotype quality: GenotypeQuality
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  bin: 6.75e1
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genotype quality: GenotypeQuality
  all individuals: 581
  bin: 2.5e0
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genotype quality: GenotypeQuality
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  bin: 2.25e1
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genotype quality: GenotypeQuality
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  bin: 7.75e1
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genotype quality: GenotypeQuality
  all individuals: 100
  bin: 1.75e1
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genotype quality: GenotypeQuality
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  bin: 8.75e1
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genotype quality: GenotypeQuality
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  bin: 6.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Thr10Thr
num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 84
  num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 134
  num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD

1-1007918-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1007918
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 1007918
    reference: chr 1
allele count: 1
allele frequency: 1.257861635220126e-4
allele num: 7950
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000237330
  ensembl protein: ENSP00000410533
  ensembl transcript: ENST00000453464
  gene symbol: RNF223
  hgvsc: ENST00000453464.2:c.29C>T
  hgvsp: ENSP00000410533.1:p.Thr10Met
  variant of: http://identifiers.org/hgnc/40020
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 863
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genotype depth: GenotypeDepth
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  bin: 8.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 92
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  variant carriers: 0
hgvs: p.Thr10Met
num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 2028
  num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: NaN
  allele num: 0
  num of homozygotes: 0
population: Other
population: Latino
population: East Asian
population: African
population: South Asian
reference allele: G
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum

1-1007919-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1007919
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 1007919
    reference: chr 1
allele count: 2
allele frequency: 2.522704339051463e-4
allele num: 7928
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000237330
  ensembl protein: ENSP00000410533
  ensembl transcript: ENST00000453464
  gene symbol: RNF223
  hgvsc: ENST00000453464.2:c.28A>C
  hgvsp: ENSP00000410533.1:p.Thr10Pro
  variant of: http://identifiers.org/hgnc/40020
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 919
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 39
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hgvs: p.Thr10Pro
num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 74
  num of homozygotes: 0
population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 252
  num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: T
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ

1-1007941-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1007941
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 1007941
    reference: chr 1
allele count: 1
allele frequency: 1.538461538461539e-4
allele num: 6500
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000237330
  ensembl protein: ENSP00000410533
  ensembl transcript: ENST00000453464
  gene symbol: RNF223
  hgvsc: ENST00000453464.2:c.6G>C
  hgvsp: ENST00000453464.2:c.6G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/40020
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 813
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 53
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hgvs: p.Ser2Ser
num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 62
  num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 1672
  num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: East Asian
population: African
population: Other
reference allele: C
site quality: DP
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum

1-1007973-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1007973
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 1007973
    reference: chr 1
allele count: 0
allele frequency: 0.0e0
allele num: 4512
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000237330
  ensembl protein: ENSP00000410533
  ensembl transcript: ENST00000453464
  gene symbol: RNF223
  hgvsc: ENST00000453464.2:c.-9-18A>G
  variant of: http://identifiers.org/hgnc/40020
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2016
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genotype depth: GenotypeDepth
  all individuals: 18
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 414
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 289
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 120
  num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 2912
  num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 54
  num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
reference allele: T
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum

1-1007987-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1007987
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 1007987
    reference: chr 1
allele count: 39
allele frequency: 1.326530612244898e-2
allele num: 2940
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000237330
  ensembl protein: ENSP00000410533
  ensembl transcript: ENST00000453464
  gene symbol: RNF223
  hgvsc: ENST00000453464.2:c.-9-32G>A
  variant of: http://identifiers.org/hgnc/40020
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1357
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  variant carriers: 33
genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
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  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5509
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  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 5
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genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3251
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  variant carriers: 53
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.25e1
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genotype quality: GenotypeQuality
  all individuals: 10
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  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 321
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genotype quality: GenotypeQuality
  all individuals: 4373
  bin: 7.5e0
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genotype quality: GenotypeQuality
  all individuals: 44
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  variant carriers: 44
genotype quality: GenotypeQuality
  all individuals: 18
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  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 98
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  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 1509
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
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  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 6.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 8.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 254
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  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2073
  bin: 2.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 721
  bin: 1.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 845
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genotype quality: GenotypeQuality
  all individuals: 5
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  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
  type: Population
  allele count: 1
  allele frequency: 7.936507936507936e-3
  allele num: 126
  num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 28
  allele frequency: 1.487778958554729e-2
  allele num: 1882
  num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 104
  num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: Latino
reference allele: C
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum

1-1007988-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1007988
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 1007988
    reference: chr 1
allele count: 6
allele frequency: 2.13371266002845e-3
allele num: 2812
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000237330
  ensembl protein: ENSP00000410533
  ensembl transcript: ENST00000453464
  gene symbol: RNF223
  hgvsc: ENST00000453464.2:c.-9-33C>T
  variant of: http://identifiers.org/hgnc/40020
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1303
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  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5591
  bin: 2.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
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genotype depth: GenotypeDepth
  all individuals: 3281
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  variant carriers: 9
genotype depth: GenotypeDepth
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  variant carriers: 2
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2030
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genotype quality: GenotypeQuality
  all individuals: 1515
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
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  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 792
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 884
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genotype quality: GenotypeQuality
  all individuals: 248
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
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  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.25e1
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genotype quality: GenotypeQuality
  all individuals: 1
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genotype quality: GenotypeQuality
  all individuals: 91
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 19
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 3
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  variant carriers: 3
num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 4
  allele frequency: 5.361930294906166e-3
  allele num: 746
  num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 26
  num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 30
  num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: South Asian
population: African
reference allele: G
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ

1-1007991-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1007991
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 1007991
    reference: chr 1
allele count: 4
allele frequency: 1.567398119122257e-3
allele num: 2552
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000237330
  ensembl protein: ENSP00000410533
  ensembl transcript: ENST00000453464
  gene symbol: RNF223
  hgvsc: ENST00000453464.2:c.-9-36G>A
  variant of: http://identifiers.org/hgnc/40020
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1177
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  variant carriers: 3
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 0
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genotype depth: GenotypeDepth
  all individuals: 4
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5690
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
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genotype depth: GenotypeDepth
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  variant carriers: 6
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 0
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genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
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  variant carriers: 5
genotype quality: GenotypeQuality
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  variant carriers: 1
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 991
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 242
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 21
  bin: 4.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 314
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 24
  num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 24
  num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 96
  num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum

1-1018225-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1018225
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 1018225
    reference: chr 1
allele count: 1
allele frequency: 4.609144542772861e-5
allele num: 21696
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000131591
  ensembl protein: ENSP00000368644
  ensembl transcript: ENST00000379339
  gene symbol: C1orf159
  hgvsc: ENST00000379339.1:c.*48G>C
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000131591
  ensembl protein: ENSP00000463144
  ensembl transcript: ENST00000467751
  gene symbol: C1orf159
  hgvsc: ENST00000467751.1:c.*578G>C
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131591
  ensembl transcript: ENST00000487177
  gene symbol: C1orf159
  hgvsc: ENST00000487177.1:n.2295G>C
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000131591
  ensembl protein: ENSP00000294576
  ensembl transcript: ENST00000294576
  gene symbol: C1orf159
  hgvsc: ENST00000294576.5:c.*48G>C
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000131591
  ensembl protein: ENSP00000400736
  ensembl transcript: ENST00000421241
  gene symbol: C1orf159
  hgvsc: ENST00000421241.2:c.*48G>C
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000131591
  ensembl protein: ENSP00000368624
  ensembl transcript: ENST00000379320
  gene symbol: C1orf159
  hgvsc: ENST00000379320.1:c.*48G>C
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000131591
  ensembl protein: ENSP00000368629
  ensembl transcript: ENST00000379325
  gene symbol: C1orf159
  hgvsc: ENST00000379325.3:c.*247G>C
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000131591
  ensembl protein: ENSP00000462798
  ensembl transcript: ENST00000477196
  gene symbol: C1orf159
  hgvsc: ENST00000477196.1:c.*1732G>C
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000131591
  ensembl protein: ENSP00000392290
  ensembl transcript: ENST00000448924
  gene symbol: C1orf159
  hgvsc: ENST00000448924.1:c.*48G>C
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131591
  ensembl transcript: ENST00000465822
  gene symbol: C1orf159
  hgvsc: ENST00000465822.1:n.911G>C
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131591
  ensembl transcript: ENST00000464905
  gene symbol: C1orf159
  hgvsc: ENST00000464905.1:n.301G>C
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000131591
  ensembl protein: ENSP00000368623
  ensembl transcript: ENST00000379319
  gene symbol: C1orf159
  hgvsc: ENST00000379319.1:c.*48G>C
  variant of: http://identifiers.org/hgnc/26062
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 699
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27610
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
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genotype depth: GenotypeDepth
  all individuals: 1578
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genotype depth: GenotypeDepth
  all individuals: 1349
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3545
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2281
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19418
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: Latino
population: European (Finnish)
population: East Asian
population: African
population: South Asian
reference allele: C
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum

1-1018229-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1018229
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 1018229
    reference: chr 1
allele count: 0
allele frequency: 0.0e0
allele num: 21686
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000131591
  ensembl protein: ENSP00000463144
  ensembl transcript: ENST00000467751
  gene symbol: C1orf159
  hgvsc: ENST00000467751.1:c.*574G>A
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131591
  ensembl transcript: ENST00000464905
  gene symbol: C1orf159
  hgvsc: ENST00000464905.1:n.297G>A
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000131591
  ensembl protein: ENSP00000400736
  ensembl transcript: ENST00000421241
  gene symbol: C1orf159
  hgvsc: ENST00000421241.2:c.*44G>A
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000131591
  ensembl protein: ENSP00000368644
  ensembl transcript: ENST00000379339
  gene symbol: C1orf159
  hgvsc: ENST00000379339.1:c.*44G>A
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000131591
  ensembl protein: ENSP00000368623
  ensembl transcript: ENST00000379319
  gene symbol: C1orf159
  hgvsc: ENST00000379319.1:c.*44G>A
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000131591
  ensembl protein: ENSP00000368629
  ensembl transcript: ENST00000379325
  gene symbol: C1orf159
  hgvsc: ENST00000379325.3:c.*243G>A
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000131591
  ensembl protein: ENSP00000294576
  ensembl transcript: ENST00000294576
  gene symbol: C1orf159
  hgvsc: ENST00000294576.5:c.*44G>A
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000131591
  ensembl protein: ENSP00000392290
  ensembl transcript: ENST00000448924
  gene symbol: C1orf159
  hgvsc: ENST00000448924.1:c.*44G>A
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131591
  ensembl transcript: ENST00000487177
  gene symbol: C1orf159
  hgvsc: ENST00000487177.1:n.2291G>A
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000131591
  ensembl protein: ENSP00000368624
  ensembl transcript: ENST00000379320
  gene symbol: C1orf159
  hgvsc: ENST00000379320.1:c.*44G>A
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000131591
  ensembl protein: ENSP00000462798
  ensembl transcript: ENST00000477196
  gene symbol: C1orf159
  hgvsc: ENST00000477196.1:c.*1728G>A
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131591
  ensembl transcript: ENST00000465822
  gene symbol: C1orf159
  hgvsc: ENST00000465822.1:n.907G>A
  variant of: http://identifiers.org/hgnc/26062
canonical: true
consequence: 3' UTR
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 1346
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3564
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27489
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19614
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1659
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2301
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: South Asian
population: African
population: Latino
population: East Asian
reference allele: C
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum

1-1018230-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1018230
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 1018230
    reference: chr 1
allele count: 1
allele frequency: 4.587997797761057e-5
allele num: 21796
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000131591
  ensembl protein: ENSP00000294576
  ensembl transcript: ENST00000294576
  gene symbol: C1orf159
  hgvsc: ENST00000294576.5:c.*43C>T
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000131591
  ensembl protein: ENSP00000368644
  ensembl transcript: ENST00000379339
  gene symbol: C1orf159
  hgvsc: ENST00000379339.1:c.*43C>T
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000131591
  ensembl protein: ENSP00000368624
  ensembl transcript: ENST00000379320
  gene symbol: C1orf159
  hgvsc: ENST00000379320.1:c.*43C>T
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000131591
  ensembl protein: ENSP00000368623
  ensembl transcript: ENST00000379319
  gene symbol: C1orf159
  hgvsc: ENST00000379319.1:c.*43C>T
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000131591
  ensembl protein: ENSP00000392290
  ensembl transcript: ENST00000448924
  gene symbol: C1orf159
  hgvsc: ENST00000448924.1:c.*43C>T
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131591
  ensembl transcript: ENST00000464905
  gene symbol: C1orf159
  hgvsc: ENST00000464905.1:n.296C>T
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000131591
  ensembl protein: ENSP00000400736
  ensembl transcript: ENST00000421241
  gene symbol: C1orf159
  hgvsc: ENST00000421241.2:c.*43C>T
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000131591
  ensembl protein: ENSP00000463144
  ensembl transcript: ENST00000467751
  gene symbol: C1orf159
  hgvsc: ENST00000467751.1:c.*573C>T
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000131591
  ensembl protein: ENSP00000462798
  ensembl transcript: ENST00000477196
  gene symbol: C1orf159
  hgvsc: ENST00000477196.1:c.*1727C>T
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131591
  ensembl transcript: ENST00000487177
  gene symbol: C1orf159
  hgvsc: ENST00000487177.1:n.2290C>T
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000131591
  ensembl protein: ENSP00000368629
  ensembl transcript: ENST00000379325
  gene symbol: C1orf159
  hgvsc: ENST00000379325.3:c.*242C>T
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131591
  ensembl transcript: ENST00000465822
  gene symbol: C1orf159
  hgvsc: ENST00000465822.1:n.906C>T
  variant of: http://identifiers.org/hgnc/26062
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1704
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3583
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1344
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27407
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2298
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19739
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Latino
reference allele: G
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: QD
site quality: FS

1-1018235-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1018235
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 1018235
    reference: chr 1
allele count: 1
allele frequency: 4.52980612429788e-5
allele num: 22076
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000131591
  ensembl protein: ENSP00000368624
  ensembl transcript: ENST00000379320
  gene symbol: C1orf159
  hgvsc: ENST00000379320.1:c.*38G>A
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000131591
  ensembl protein: ENSP00000368629
  ensembl transcript: ENST00000379325
  gene symbol: C1orf159
  hgvsc: ENST00000379325.3:c.*237G>A
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000131591
  ensembl protein: ENSP00000368644
  ensembl transcript: ENST00000379339
  gene symbol: C1orf159
  hgvsc: ENST00000379339.1:c.*38G>A
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000131591
  ensembl protein: ENSP00000294576
  ensembl transcript: ENST00000294576
  gene symbol: C1orf159
  hgvsc: ENST00000294576.5:c.*38G>A
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131591
  ensembl transcript: ENST00000465822
  gene symbol: C1orf159
  hgvsc: ENST00000465822.1:n.901G>A
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000131591
  ensembl protein: ENSP00000368623
  ensembl transcript: ENST00000379319
  gene symbol: C1orf159
  hgvsc: ENST00000379319.1:c.*38G>A
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000131591
  ensembl protein: ENSP00000462798
  ensembl transcript: ENST00000477196
  gene symbol: C1orf159
  hgvsc: ENST00000477196.1:c.*1722G>A
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131591
  ensembl transcript: ENST00000487177
  gene symbol: C1orf159
  hgvsc: ENST00000487177.1:n.2285G>A
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131591
  ensembl transcript: ENST00000464905
  gene symbol: C1orf159
  hgvsc: ENST00000464905.1:n.291G>A
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000131591
  ensembl protein: ENSP00000463144
  ensembl transcript: ENST00000467751
  gene symbol: C1orf159
  hgvsc: ENST00000467751.1:c.*568G>A
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000131591
  ensembl protein: ENSP00000392290
  ensembl transcript: ENST00000448924
  gene symbol: C1orf159
  hgvsc: ENST00000448924.1:c.*38G>A
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000131591
  ensembl protein: ENSP00000400736
  ensembl transcript: ENST00000421241
  gene symbol: C1orf159
  hgvsc: ENST00000421241.2:c.*38G>A
  variant of: http://identifiers.org/hgnc/26062
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20839
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26397
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1873
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2366
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1330
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3622
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: Latino
population: European (Finnish)
population: East Asian
population: African
population: South Asian
reference allele: C
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD

1-1018241-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1018241
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 1018241
    reference: chr 1
allele count: 0
allele frequency: 0.0e0
allele num: 22588
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000131591
  ensembl protein: ENSP00000368644
  ensembl transcript: ENST00000379339
  gene symbol: C1orf159
  hgvsc: ENST00000379339.1:c.*32C>T
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000131591
  ensembl protein: ENSP00000294576
  ensembl transcript: ENST00000294576
  gene symbol: C1orf159
  hgvsc: ENST00000294576.5:c.*32C>T
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000131591
  ensembl protein: ENSP00000368629
  ensembl transcript: ENST00000379325
  gene symbol: C1orf159
  hgvsc: ENST00000379325.3:c.*231C>T
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000131591
  ensembl protein: ENSP00000463144
  ensembl transcript: ENST00000467751
  gene symbol: C1orf159
  hgvsc: ENST00000467751.1:c.*562C>T
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131591
  ensembl transcript: ENST00000465822
  gene symbol: C1orf159
  hgvsc: ENST00000465822.1:n.895C>T
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000131591
  ensembl protein: ENSP00000462798
  ensembl transcript: ENST00000477196
  gene symbol: C1orf159
  hgvsc: ENST00000477196.1:c.*1716C>T
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000131591
  ensembl protein: ENSP00000368623
  ensembl transcript: ENST00000379319
  gene symbol: C1orf159
  hgvsc: ENST00000379319.1:c.*32C>T
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000131591
  ensembl protein: ENSP00000400736
  ensembl transcript: ENST00000421241
  gene symbol: C1orf159
  hgvsc: ENST00000421241.2:c.*32C>T
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131591
  ensembl transcript: ENST00000487177
  gene symbol: C1orf159
  hgvsc: ENST00000487177.1:n.2279C>T
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000131591
  ensembl protein: ENSP00000368624
  ensembl transcript: ENST00000379320
  gene symbol: C1orf159
  hgvsc: ENST00000379320.1:c.*32C>T
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131591
  ensembl transcript: ENST00000464905
  gene symbol: C1orf159
  hgvsc: ENST00000464905.1:n.285C>T
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000131591
  ensembl protein: ENSP00000392290
  ensembl transcript: ENST00000448924
  gene symbol: C1orf159
  hgvsc: ENST00000448924.1:c.*32C>T
  variant of: http://identifiers.org/hgnc/26062
canonical: true
consequence: 3' UTR
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1338
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23073
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3660
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2010
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2596
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24092
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
population: South Asian
population: Latino
reference allele: G
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: MQ

1-1018242-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1018242
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 1018242
    reference: chr 1
allele count: 2
allele frequency: 8.763473841030585e-5
allele num: 22822
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131591
  ensembl transcript: ENST00000487177
  gene symbol: C1orf159
  hgvsc: ENST00000487177.1:n.2278G>C
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000131591
  ensembl protein: ENSP00000368629
  ensembl transcript: ENST00000379325
  gene symbol: C1orf159
  hgvsc: ENST00000379325.3:c.*230G>C
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000131591
  ensembl protein: ENSP00000462798
  ensembl transcript: ENST00000477196
  gene symbol: C1orf159
  hgvsc: ENST00000477196.1:c.*1715G>C
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000131591
  ensembl protein: ENSP00000463144
  ensembl transcript: ENST00000467751
  gene symbol: C1orf159
  hgvsc: ENST00000467751.1:c.*561G>C
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131591
  ensembl transcript: ENST00000464905
  gene symbol: C1orf159
  hgvsc: ENST00000464905.1:n.284G>C
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000131591
  ensembl protein: ENSP00000392290
  ensembl transcript: ENST00000448924
  gene symbol: C1orf159
  hgvsc: ENST00000448924.1:c.*31G>C
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131591
  ensembl transcript: ENST00000465822
  gene symbol: C1orf159
  hgvsc: ENST00000465822.1:n.894G>C
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000131591
  ensembl protein: ENSP00000400736
  ensembl transcript: ENST00000421241
  gene symbol: C1orf159
  hgvsc: ENST00000421241.2:c.*31G>C
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000131591
  ensembl protein: ENSP00000368624
  ensembl transcript: ENST00000379320
  gene symbol: C1orf159
  hgvsc: ENST00000379320.1:c.*31G>C
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000131591
  ensembl protein: ENSP00000368644
  ensembl transcript: ENST00000379339
  gene symbol: C1orf159
  hgvsc: ENST00000379339.1:c.*31G>C
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000131591
  ensembl protein: ENSP00000368623
  ensembl transcript: ENST00000379319
  gene symbol: C1orf159
  hgvsc: ENST00000379319.1:c.*31G>C
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000131591
  ensembl protein: ENSP00000294576
  ensembl transcript: ENST00000294576
  gene symbol: C1orf159
  hgvsc: ENST00000294576.5:c.*31G>C
  variant of: http://identifiers.org/hgnc/26062
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23601
  bin: 7.5e0
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 3656
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1336
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2047
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23601
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2606
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: European (Finnish)
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ

1-1018249-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1018249
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 1018249
    reference: chr 1
allele count: 3
allele frequency: 1.273020453195281e-4
allele num: 23566
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000131591
  ensembl protein: ENSP00000368644
  ensembl transcript: ENST00000379339
  gene symbol: C1orf159
  hgvsc: ENST00000379339.1:c.*24G>C
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000131591
  ensembl protein: ENSP00000463144
  ensembl transcript: ENST00000467751
  gene symbol: C1orf159
  hgvsc: ENST00000467751.1:c.*554G>C
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131591
  ensembl transcript: ENST00000487177
  gene symbol: C1orf159
  hgvsc: ENST00000487177.1:n.2271G>C
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000131591
  ensembl protein: ENSP00000368624
  ensembl transcript: ENST00000379320
  gene symbol: C1orf159
  hgvsc: ENST00000379320.1:c.*24G>C
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000131591
  ensembl protein: ENSP00000400736
  ensembl transcript: ENST00000421241
  gene symbol: C1orf159
  hgvsc: ENST00000421241.2:c.*24G>C
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000131591
  ensembl protein: ENSP00000294576
  ensembl transcript: ENST00000294576
  gene symbol: C1orf159
  hgvsc: ENST00000294576.5:c.*24G>C
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131591
  ensembl transcript: ENST00000464905
  gene symbol: C1orf159
  hgvsc: ENST00000464905.1:n.277G>C
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131591
  ensembl transcript: ENST00000465822
  gene symbol: C1orf159
  hgvsc: ENST00000465822.1:n.887G>C
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000131591
  ensembl protein: ENSP00000462798
  ensembl transcript: ENST00000477196
  gene symbol: C1orf159
  hgvsc: ENST00000477196.1:c.*1708G>C
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000131591
  ensembl protein: ENSP00000368623
  ensembl transcript: ENST00000379319
  gene symbol: C1orf159
  hgvsc: ENST00000379319.1:c.*24G>C
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000131591
  ensembl protein: ENSP00000368629
  ensembl transcript: ENST00000379325
  gene symbol: C1orf159
  hgvsc: ENST00000379325.3:c.*223G>C
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000131591
  ensembl protein: ENSP00000392290
  ensembl transcript: ENST00000448924
  gene symbol: C1orf159
  hgvsc: ENST00000448924.1:c.*24G>C
  variant of: http://identifiers.org/hgnc/26062
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 20332
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3694
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2250
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26573
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1346
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2875
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Other
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ

1-1018249-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1018249
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 1018249
    reference: chr 1
allele count: 201
allele frequency: 8.529237036408385e-3
allele num: 23566
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000131591
  ensembl protein: ENSP00000368644
  ensembl transcript: ENST00000379339
  gene symbol: C1orf159
  hgvsc: ENST00000379339.1:c.*24G>A
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000131591
  ensembl protein: ENSP00000368624
  ensembl transcript: ENST00000379320
  gene symbol: C1orf159
  hgvsc: ENST00000379320.1:c.*24G>A
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000131591
  ensembl protein: ENSP00000400736
  ensembl transcript: ENST00000421241
  gene symbol: C1orf159
  hgvsc: ENST00000421241.2:c.*24G>A
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000131591
  ensembl protein: ENSP00000368629
  ensembl transcript: ENST00000379325
  gene symbol: C1orf159
  hgvsc: ENST00000379325.3:c.*223G>A
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000131591
  ensembl protein: ENSP00000462798
  ensembl transcript: ENST00000477196
  gene symbol: C1orf159
  hgvsc: ENST00000477196.1:c.*1708G>A
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000131591
  ensembl protein: ENSP00000392290
  ensembl transcript: ENST00000448924
  gene symbol: C1orf159
  hgvsc: ENST00000448924.1:c.*24G>A
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000131591
  ensembl protein: ENSP00000368623
  ensembl transcript: ENST00000379319
  gene symbol: C1orf159
  hgvsc: ENST00000379319.1:c.*24G>A
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131591
  ensembl transcript: ENST00000487177
  gene symbol: C1orf159
  hgvsc: ENST00000487177.1:n.2271G>A
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000131591
  ensembl protein: ENSP00000463144
  ensembl transcript: ENST00000467751
  gene symbol: C1orf159
  hgvsc: ENST00000467751.1:c.*554G>A
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131591
  ensembl transcript: ENST00000465822
  gene symbol: C1orf159
  hgvsc: ENST00000465822.1:n.887G>A
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131591
  ensembl transcript: ENST00000464905
  gene symbol: C1orf159
  hgvsc: ENST00000464905.1:n.277G>A
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000131591
  ensembl protein: ENSP00000294576
  ensembl transcript: ENST00000294576
  gene symbol: C1orf159
  hgvsc: ENST00000294576.5:c.*24G>A
  variant of: http://identifiers.org/hgnc/26062
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 6.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 20332
  bin: 2.5e0
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 3694
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2250
  bin: 2.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 4.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 1.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 5.75e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 2875
  bin: 1.25e1
  variant carriers: 51
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 4.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 6.25e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 7.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 9.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 26573
  bin: 7.5e0
  variant carriers: 99
genotype depth: GenotypeDepth
  all individuals: 1346
  bin: 3.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 5.25e1
  variant carriers: 10
genotype quality: GenotypeQuality
num of homozygotes: 1
population: African
population: Latino
population: South Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQ

1-1018254-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1018254
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 1018254
    reference: chr 1
allele count: 3
allele frequency: 1.222294654498044e-4
allele num: 24544
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000131591
  ensembl protein: ENSP00000462798
  ensembl transcript: ENST00000477196
  gene symbol: C1orf159
  hgvsc: ENST00000477196.1:c.*1703G>A
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000131591
  ensembl protein: ENSP00000368644
  ensembl transcript: ENST00000379339
  gene symbol: C1orf159
  hgvsc: ENST00000379339.1:c.*19G>A
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000131591
  ensembl protein: ENSP00000368623
  ensembl transcript: ENST00000379319
  gene symbol: C1orf159
  hgvsc: ENST00000379319.1:c.*19G>A
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131591
  ensembl transcript: ENST00000487177
  gene symbol: C1orf159
  hgvsc: ENST00000487177.1:n.2266G>A
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000131591
  ensembl protein: ENSP00000368624
  ensembl transcript: ENST00000379320
  gene symbol: C1orf159
  hgvsc: ENST00000379320.1:c.*19G>A
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000131591
  ensembl protein: ENSP00000392290
  ensembl transcript: ENST00000448924
  gene symbol: C1orf159
  hgvsc: ENST00000448924.1:c.*19G>A
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000131591
  ensembl protein: ENSP00000294576
  ensembl transcript: ENST00000294576
  gene symbol: C1orf159
  hgvsc: ENST00000294576.5:c.*19G>A
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131591
  ensembl transcript: ENST00000464905
  gene symbol: C1orf159
  hgvsc: ENST00000464905.1:n.272G>A
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000131591
  ensembl protein: ENSP00000400736
  ensembl transcript: ENST00000421241
  gene symbol: C1orf159
  hgvsc: ENST00000421241.2:c.*19G>A
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000131591
  ensembl protein: ENSP00000368629
  ensembl transcript: ENST00000379325
  gene symbol: C1orf159
  hgvsc: ENST00000379325.3:c.*218G>A
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000131591
  ensembl protein: ENSP00000463144
  ensembl transcript: ENST00000467751
  gene symbol: C1orf159
  hgvsc: ENST00000467751.1:c.*549G>A
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131591
  ensembl transcript: ENST00000465822
  gene symbol: C1orf159
  hgvsc: ENST00000465822.1:n.882G>A
  variant of: http://identifiers.org/hgnc/26062
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1363
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28402
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3818
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18232
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3079
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2481
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: DP

1-1018255-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1018255
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 1018255
    reference: chr 1
allele count: 0
allele frequency: 0.0e0
allele num: 24970
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000131591
  ensembl protein: ENSP00000400736
  ensembl transcript: ENST00000421241
  gene symbol: C1orf159
  hgvsc: ENST00000421241.2:c.*18C>T
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000131591
  ensembl protein: ENSP00000368623
  ensembl transcript: ENST00000379319
  gene symbol: C1orf159
  hgvsc: ENST00000379319.1:c.*18C>T
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000131591
  ensembl protein: ENSP00000294576
  ensembl transcript: ENST00000294576
  gene symbol: C1orf159
  hgvsc: ENST00000294576.5:c.*18C>T
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000131591
  ensembl protein: ENSP00000463144
  ensembl transcript: ENST00000467751
  gene symbol: C1orf159
  hgvsc: ENST00000467751.1:c.*548C>T
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000131591
  ensembl protein: ENSP00000368629
  ensembl transcript: ENST00000379325
  gene symbol: C1orf159
  hgvsc: ENST00000379325.3:c.*217C>T
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131591
  ensembl transcript: ENST00000487177
  gene symbol: C1orf159
  hgvsc: ENST00000487177.1:n.2265C>T
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000131591
  ensembl protein: ENSP00000462798
  ensembl transcript: ENST00000477196
  gene symbol: C1orf159
  hgvsc: ENST00000477196.1:c.*1702C>T
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000131591
  ensembl protein: ENSP00000368644
  ensembl transcript: ENST00000379339
  gene symbol: C1orf159
  hgvsc: ENST00000379339.1:c.*18C>T
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000131591
  ensembl protein: ENSP00000368624
  ensembl transcript: ENST00000379320
  gene symbol: C1orf159
  hgvsc: ENST00000379320.1:c.*18C>T
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131591
  ensembl transcript: ENST00000465822
  gene symbol: C1orf159
  hgvsc: ENST00000465822.1:n.881C>T
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131591
  ensembl transcript: ENST00000464905
  gene symbol: C1orf159
  hgvsc: ENST00000464905.1:n.271C>T
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000131591
  ensembl protein: ENSP00000392290
  ensembl transcript: ENST00000448924
  gene symbol: C1orf159
  hgvsc: ENST00000448924.1:c.*18C>T
  variant of: http://identifiers.org/hgnc/26062
canonical: true
consequence: 3' UTR
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3120
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17457
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1360
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2583
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29090
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3838
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: South Asian
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: MQ

1-1018258-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1018258
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 1018258
    reference: chr 1
allele count: 1
allele frequency: 3.887420307883688e-5
allele num: 25724
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000131591
  ensembl protein: ENSP00000368624
  ensembl transcript: ENST00000379320
  gene symbol: C1orf159
  hgvsc: ENST00000379320.1:c.*15C>T
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000131591
  ensembl protein: ENSP00000462798
  ensembl transcript: ENST00000477196
  gene symbol: C1orf159
  hgvsc: ENST00000477196.1:c.*1699C>T
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000131591
  ensembl protein: ENSP00000392290
  ensembl transcript: ENST00000448924
  gene symbol: C1orf159
  hgvsc: ENST00000448924.1:c.*15C>T
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131591
  ensembl transcript: ENST00000465822
  gene symbol: C1orf159
  hgvsc: ENST00000465822.1:n.878C>T
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000131591
  ensembl protein: ENSP00000368644
  ensembl transcript: ENST00000379339
  gene symbol: C1orf159
  hgvsc: ENST00000379339.1:c.*15C>T
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000131591
  ensembl protein: ENSP00000368629
  ensembl transcript: ENST00000379325
  gene symbol: C1orf159
  hgvsc: ENST00000379325.3:c.*214C>T
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000131591
  ensembl protein: ENSP00000463144
  ensembl transcript: ENST00000467751
  gene symbol: C1orf159
  hgvsc: ENST00000467751.1:c.*545C>T
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131591
  ensembl transcript: ENST00000487177
  gene symbol: C1orf159
  hgvsc: ENST00000487177.1:n.2262C>T
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000131591
  ensembl protein: ENSP00000400736
  ensembl transcript: ENST00000421241
  gene symbol: C1orf159
  hgvsc: ENST00000421241.2:c.*15C>T
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131591
  ensembl transcript: ENST00000464905
  gene symbol: C1orf159
  hgvsc: ENST00000464905.1:n.268C>T
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000131591
  ensembl protein: ENSP00000294576
  ensembl transcript: ENST00000294576
  gene symbol: C1orf159
  hgvsc: ENST00000294576.5:c.*15C>T
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000131591
  ensembl protein: ENSP00000368623
  ensembl transcript: ENST00000379319
  gene symbol: C1orf159
  hgvsc: ENST00000379319.1:c.*15C>T
  variant of: http://identifiers.org/hgnc/26062
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3860
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30071
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16244
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3271
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1356
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2727
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: South Asian
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP

1-1018262-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1018262
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 1018262
    reference: chr 1
allele count: 1
allele frequency: 3.734129947722181e-5
allele num: 26780
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000131591
  ensembl protein: ENSP00000392290
  ensembl transcript: ENST00000448924
  gene symbol: C1orf159
  hgvsc: ENST00000448924.1:c.*11G>A
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000131591
  ensembl protein: ENSP00000368623
  ensembl transcript: ENST00000379319
  gene symbol: C1orf159
  hgvsc: ENST00000379319.1:c.*11G>A
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000131591
  ensembl protein: ENSP00000368644
  ensembl transcript: ENST00000379339
  gene symbol: C1orf159
  hgvsc: ENST00000379339.1:c.*11G>A
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000131591
  ensembl protein: ENSP00000294576
  ensembl transcript: ENST00000294576
  gene symbol: C1orf159
  hgvsc: ENST00000294576.5:c.*11G>A
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000131591
  ensembl protein: ENSP00000368624
  ensembl transcript: ENST00000379320
  gene symbol: C1orf159
  hgvsc: ENST00000379320.1:c.*11G>A
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000131591
  ensembl protein: ENSP00000368629
  ensembl transcript: ENST00000379325
  gene symbol: C1orf159
  hgvsc: ENST00000379325.3:c.*210G>A
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131591
  ensembl transcript: ENST00000464905
  gene symbol: C1orf159
  hgvsc: ENST00000464905.1:n.264G>A
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131591
  ensembl transcript: ENST00000465822
  gene symbol: C1orf159
  hgvsc: ENST00000465822.1:n.874G>A
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000131591
  ensembl protein: ENSP00000400736
  ensembl transcript: ENST00000421241
  gene symbol: C1orf159
  hgvsc: ENST00000421241.2:c.*11G>A
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131591
  ensembl transcript: ENST00000487177
  gene symbol: C1orf159
  hgvsc: ENST00000487177.1:n.2258G>A
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000131591
  ensembl protein: ENSP00000462798
  ensembl transcript: ENST00000477196
  gene symbol: C1orf159
  hgvsc: ENST00000477196.1:c.*1695G>A
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000131591
  ensembl protein: ENSP00000463144
  ensembl transcript: ENST00000467751
  gene symbol: C1orf159
  hgvsc: ENST00000467751.1:c.*541G>A
  variant of: http://identifiers.org/hgnc/26062
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14299
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3012
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31471
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1353
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3609
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3891
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum

1-1018263-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1018263
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 1018263
    reference: chr 1
allele count: 5
allele frequency: 1.828153564899452e-4
allele num: 27350
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000131591
  ensembl protein: ENSP00000368623
  ensembl transcript: ENST00000379319
  gene symbol: C1orf159
  hgvsc: ENST00000379319.1:c.*10C>T
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000131591
  ensembl protein: ENSP00000462798
  ensembl transcript: ENST00000477196
  gene symbol: C1orf159
  hgvsc: ENST00000477196.1:c.*1694C>T
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000131591
  ensembl protein: ENSP00000368644
  ensembl transcript: ENST00000379339
  gene symbol: C1orf159
  hgvsc: ENST00000379339.1:c.*10C>T
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000131591
  ensembl protein: ENSP00000400736
  ensembl transcript: ENST00000421241
  gene symbol: C1orf159
  hgvsc: ENST00000421241.2:c.*10C>T
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000131591
  ensembl protein: ENSP00000368624
  ensembl transcript: ENST00000379320
  gene symbol: C1orf159
  hgvsc: ENST00000379320.1:c.*10C>T
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131591
  ensembl transcript: ENST00000487177
  gene symbol: C1orf159
  hgvsc: ENST00000487177.1:n.2257C>T
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000131591
  ensembl protein: ENSP00000392290
  ensembl transcript: ENST00000448924
  gene symbol: C1orf159
  hgvsc: ENST00000448924.1:c.*10C>T
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000131591
  ensembl protein: ENSP00000294576
  ensembl transcript: ENST00000294576
  gene symbol: C1orf159
  hgvsc: ENST00000294576.5:c.*10C>T
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000131591
  ensembl protein: ENSP00000463144
  ensembl transcript: ENST00000467751
  gene symbol: C1orf159
  hgvsc: ENST00000467751.1:c.*540C>T
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000131591
  ensembl protein: ENSP00000368629
  ensembl transcript: ENST00000379325
  gene symbol: C1orf159
  hgvsc: ENST00000379325.3:c.*209C>T
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131591
  ensembl transcript: ENST00000464905
  gene symbol: C1orf159
  hgvsc: ENST00000464905.1:n.263C>T
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131591
  ensembl transcript: ENST00000465822
  gene symbol: C1orf159
  hgvsc: ENST00000465822.1:n.873C>T
  variant of: http://identifiers.org/hgnc/26062
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32154
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1351
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3673
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3897
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13424
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: East Asian
population: Other
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: African
reference allele: G
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: MQ

http://identifiers.org/exac.variant/1-1018274-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1018274
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 1018274
    reference: chr 1
allele count: 1
allele frequency: 3.017501508750754e-5
allele num: 33140
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: stop_lost
  ensembl gene: ENSG00000131591
  ensembl protein: ENSP00000294576
  ensembl transcript: ENST00000294576
  gene symbol: C1orf159
  hgvsc: ENST00000294576.5:c.1034G>T
  hgvsp: ENSP00000294576.5:p.Ter345LeuextTer43
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: false
  consequence: stop_lost
  ensembl gene: ENSG00000131591
  ensembl protein: ENSP00000392290
  ensembl transcript: ENST00000448924
  gene symbol: C1orf159
  hgvsc: ENST00000448924.1:c.1142G>T
  hgvsp: ENSP00000392290.1:p.Ter381LeuextTer43
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000131591
  ensembl protein: ENSP00000368629
  ensembl transcript: ENST00000379325
  gene symbol: C1orf159
  hgvsc: ENST00000379325.3:c.*198G>T
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131591
  ensembl transcript: ENST00000465822
  gene symbol: C1orf159
  hgvsc: ENST00000465822.1:n.862G>T
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000131591
  ensembl protein: ENSP00000463144
  ensembl transcript: ENST00000467751
  gene symbol: C1orf159
  hgvsc: ENST00000467751.1:c.*529G>T
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000131591
  ensembl protein: ENSP00000462798
  ensembl transcript: ENST00000477196
  gene symbol: C1orf159
  hgvsc: ENST00000477196.1:c.*1683G>T
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: false
  consequence: stop_lost
  ensembl gene: ENSG00000131591
  ensembl protein: ENSP00000368624
  ensembl transcript: ENST00000379320
  gene symbol: C1orf159
  hgvsc: ENST00000379320.1:c.1034G>T
  hgvsp: ENSP00000368624.1:p.Ter345LeuextTer43
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: true
  consequence: stop_lost
  ensembl gene: ENSG00000131591
  ensembl protein: ENSP00000400736
  ensembl transcript: ENST00000421241
  gene symbol: C1orf159
  hgvsc: ENST00000421241.2:c.596G>T
  hgvsp: ENSP00000400736.2:p.Ter199LeuextTer43
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: false
  consequence: stop_lost
  ensembl gene: ENSG00000131591
  ensembl protein: ENSP00000368623
  ensembl transcript: ENST00000379319
  gene symbol: C1orf159
  hgvsc: ENST00000379319.1:c.596G>T
  hgvsp: ENSP00000368623.1:p.Ter199LeuextTer43
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: false
  consequence: stop_lost
  ensembl gene: ENSG00000131591
  ensembl protein: ENSP00000368644
  ensembl transcript: ENST00000379339
  gene symbol: C1orf159
  hgvsc: ENST00000379339.1:c.1142G>T
  hgvsp: ENSP00000368644.1:p.Ter381LeuextTer43
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131591
  ensembl transcript: ENST00000487177
  gene symbol: C1orf159
  hgvsc: ENST00000487177.1:n.2246G>T
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131591
  ensembl transcript: ENST00000464905
  gene symbol: C1orf159
  hgvsc: ENST00000464905.1:n.252G>T
  variant of: http://identifiers.org/hgnc/26062
canonical: true
consequence: stop lost
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5095
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3983
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8985
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34081
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4315
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1363
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ter199LeuextTer43
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Latino
population: Other
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum

1-1018289-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1018289
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 1018289
    reference: chr 1
allele count: 0
allele frequency: 0.0e0
allele num: 40222
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131591
  ensembl protein: ENSP00000368624
  ensembl transcript: ENST00000379320
  gene symbol: C1orf159
  hgvsc: ENST00000379320.1:c.1019G>A
  hgvsp: ENSP00000368624.1:p.Arg340His
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131591
  ensembl transcript: ENST00000465822
  gene symbol: C1orf159
  hgvsc: ENST00000465822.1:n.847G>A
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131591
  ensembl protein: ENSP00000368644
  ensembl transcript: ENST00000379339
  gene symbol: C1orf159
  hgvsc: ENST00000379339.1:c.1127G>A
  hgvsp: ENSP00000368644.1:p.Arg376His
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131591
  ensembl protein: ENSP00000294576
  ensembl transcript: ENST00000294576
  gene symbol: C1orf159
  hgvsc: ENST00000294576.5:c.1019G>A
  hgvsp: ENSP00000294576.5:p.Arg340His
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000131591
  ensembl protein: ENSP00000400736
  ensembl transcript: ENST00000421241
  gene symbol: C1orf159
  hgvsc: ENST00000421241.2:c.581G>A
  hgvsp: ENSP00000400736.2:p.Arg194His
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131591
  ensembl transcript: ENST00000464905
  gene symbol: C1orf159
  hgvsc: ENST00000464905.1:n.237G>A
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000131591
  ensembl protein: ENSP00000463144
  ensembl transcript: ENST00000467751
  gene symbol: C1orf159
  hgvsc: ENST00000467751.1:c.*514G>A
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000131591
  ensembl protein: ENSP00000462798
  ensembl transcript: ENST00000477196
  gene symbol: C1orf159
  hgvsc: ENST00000477196.1:c.*1668G>A
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000131591
  ensembl protein: ENSP00000368629
  ensembl transcript: ENST00000379325
  gene symbol: C1orf159
  hgvsc: ENST00000379325.3:c.*183G>A
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131591
  ensembl protein: ENSP00000368623
  ensembl transcript: ENST00000379319
  gene symbol: C1orf159
  hgvsc: ENST00000379319.1:c.581G>A
  hgvsp: ENSP00000368623.1:p.Arg194His
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131591
  ensembl protein: ENSP00000392290
  ensembl transcript: ENST00000448924
  gene symbol: C1orf159
  hgvsc: ENST00000448924.1:c.1127G>A
  hgvsp: ENSP00000392290.1:p.Arg376His
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131591
  ensembl transcript: ENST00000487177
  gene symbol: C1orf159
  hgvsc: ENST00000487177.1:n.2231G>A
  variant of: http://identifiers.org/hgnc/26062
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7660
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6285
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4772
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1388
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4180
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1254
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33050
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg194His
num of homozygotes: 0
population: European (Finnish)
population: Other
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum

1-1018300-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1018300
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 1018300
    reference: chr 1
allele count: 1
allele frequency: 2.014260967650969e-5
allele num: 49646
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131591
  ensembl protein: ENSP00000294576
  ensembl transcript: ENST00000294576
  gene symbol: C1orf159
  hgvsc: ENST00000294576.5:c.1008G>C
  hgvsp: ENST00000294576.5:c.1008G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131591
  ensembl transcript: ENST00000464905
  gene symbol: C1orf159
  hgvsc: ENST00000464905.1:n.226G>C
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131591
  ensembl transcript: ENST00000465822
  gene symbol: C1orf159
  hgvsc: ENST00000465822.1:n.836G>C
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131591
  ensembl protein: ENSP00000368644
  ensembl transcript: ENST00000379339
  gene symbol: C1orf159
  hgvsc: ENST00000379339.1:c.1116G>C
  hgvsp: ENST00000379339.1:c.1116G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000131591
  ensembl protein: ENSP00000368629
  ensembl transcript: ENST00000379325
  gene symbol: C1orf159
  hgvsc: ENST00000379325.3:c.*172G>C
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131591
  ensembl protein: ENSP00000368623
  ensembl transcript: ENST00000379319
  gene symbol: C1orf159
  hgvsc: ENST00000379319.1:c.570G>C
  hgvsp: ENST00000379319.1:c.570G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131591
  ensembl protein: ENSP00000392290
  ensembl transcript: ENST00000448924
  gene symbol: C1orf159
  hgvsc: ENST00000448924.1:c.1116G>C
  hgvsp: ENST00000448924.1:c.1116G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131591
  ensembl protein: ENSP00000390635
  ensembl transcript: ENST00000434641
  gene symbol: C1orf159
  hgvsc: ENST00000434641.1:c.667G>C
  hgvsp: ENSP00000390635.1:p.Gly223Arg
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000131591
  ensembl protein: ENSP00000463144
  ensembl transcript: ENST00000467751
  gene symbol: C1orf159
  hgvsc: ENST00000467751.1:c.*503G>C
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131591
  ensembl transcript: ENST00000487177
  gene symbol: C1orf159
  hgvsc: ENST00000487177.1:n.2220G>C
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131591
  ensembl protein: ENSP00000368624
  ensembl transcript: ENST00000379320
  gene symbol: C1orf159
  hgvsc: ENST00000379320.1:c.1008G>C
  hgvsp: ENST00000379320.1:c.1008G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000131591
  ensembl protein: ENSP00000400736
  ensembl transcript: ENST00000421241
  gene symbol: C1orf159
  hgvsc: ENST00000421241.2:c.570G>C
  hgvsp: ENST00000421241.2:c.570G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000131591
  ensembl protein: ENSP00000462798
  ensembl transcript: ENST00000477196
  gene symbol: C1orf159
  hgvsc: ENST00000477196.1:c.*1657G>C
  variant of: http://identifiers.org/hgnc/26062
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30131
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5104
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4606
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4629
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1396
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly223Arg
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
population: South Asian
population: European (Finnish)
population: African
reference allele: C
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD

1-1018300-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1018300
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 1018300
    reference: chr 1
allele count: 1
allele frequency: 2.014260967650969e-5
allele num: 49646
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131591
  ensembl protein: ENSP00000368624
  ensembl transcript: ENST00000379320
  gene symbol: C1orf159
  hgvsc: ENST00000379320.1:c.1008G>A
  hgvsp: ENST00000379320.1:c.1008G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000131591
  ensembl protein: ENSP00000368629
  ensembl transcript: ENST00000379325
  gene symbol: C1orf159
  hgvsc: ENST00000379325.3:c.*172G>A
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131591
  ensembl transcript: ENST00000464905
  gene symbol: C1orf159
  hgvsc: ENST00000464905.1:n.226G>A
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131591
  ensembl protein: ENSP00000390635
  ensembl transcript: ENST00000434641
  gene symbol: C1orf159
  hgvsc: ENST00000434641.1:c.667G>A
  hgvsp: ENSP00000390635.1:p.Gly223Arg
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131591
  ensembl protein: ENSP00000392290
  ensembl transcript: ENST00000448924
  gene symbol: C1orf159
  hgvsc: ENST00000448924.1:c.1116G>A
  hgvsp: ENST00000448924.1:c.1116G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131591
  ensembl transcript: ENST00000465822
  gene symbol: C1orf159
  hgvsc: ENST00000465822.1:n.836G>A
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131591
  ensembl protein: ENSP00000368623
  ensembl transcript: ENST00000379319
  gene symbol: C1orf159
  hgvsc: ENST00000379319.1:c.570G>A
  hgvsp: ENST00000379319.1:c.570G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000131591
  ensembl protein: ENSP00000400736
  ensembl transcript: ENST00000421241
  gene symbol: C1orf159
  hgvsc: ENST00000421241.2:c.570G>A
  hgvsp: ENST00000421241.2:c.570G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000131591
  ensembl protein: ENSP00000463144
  ensembl transcript: ENST00000467751
  gene symbol: C1orf159
  hgvsc: ENST00000467751.1:c.*503G>A
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131591
  ensembl protein: ENSP00000368644
  ensembl transcript: ENST00000379339
  gene symbol: C1orf159
  hgvsc: ENST00000379339.1:c.1116G>A
  hgvsp: ENST00000379339.1:c.1116G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131591
  ensembl transcript: ENST00000487177
  gene symbol: C1orf159
  hgvsc: ENST00000487177.1:n.2220G>A
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000131591
  ensembl protein: ENSP00000462798
  ensembl transcript: ENST00000477196
  gene symbol: C1orf159
  hgvsc: ENST00000477196.1:c.*1657G>A
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131591
  ensembl protein: ENSP00000294576
  ensembl transcript: ENST00000294576
  gene symbol: C1orf159
  hgvsc: ENST00000294576.5:c.1008G>A
  hgvsp: ENST00000294576.5:c.1008G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26062
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4629
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4606
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1396
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30131
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11372
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1467
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5104
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly223Arg
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
population: South Asian
population: East Asian
reference allele: C
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff

1-1018301-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1018301
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 1018301
    reference: chr 1
allele count: 6
allele frequency: 1.178550383028874e-4
allele num: 50910
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131591
  ensembl transcript: ENST00000464905
  gene symbol: C1orf159
  hgvsc: ENST00000464905.1:n.225C>T
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131591
  ensembl protein: ENSP00000392290
  ensembl transcript: ENST00000448924
  gene symbol: C1orf159
  hgvsc: ENST00000448924.1:c.1115C>T
  hgvsp: ENSP00000392290.1:p.Pro372Leu
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131591
  ensembl protein: ENSP00000368623
  ensembl transcript: ENST00000379319
  gene symbol: C1orf159
  hgvsc: ENST00000379319.1:c.569C>T
  hgvsp: ENSP00000368623.1:p.Pro190Leu
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131591
  ensembl transcript: ENST00000487177
  gene symbol: C1orf159
  hgvsc: ENST00000487177.1:n.2219C>T
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000131591
  ensembl protein: ENSP00000400736
  ensembl transcript: ENST00000421241
  gene symbol: C1orf159
  hgvsc: ENST00000421241.2:c.569C>T
  hgvsp: ENSP00000400736.2:p.Pro190Leu
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000131591
  ensembl protein: ENSP00000462798
  ensembl transcript: ENST00000477196
  gene symbol: C1orf159
  hgvsc: ENST00000477196.1:c.*1656C>T
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131591
  ensembl protein: ENSP00000390635
  ensembl transcript: ENST00000434641
  gene symbol: C1orf159
  hgvsc: ENST00000434641.1:c.666C>T
  hgvsp: ENST00000434641.1:c.666C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131591
  ensembl protein: ENSP00000294576
  ensembl transcript: ENST00000294576
  gene symbol: C1orf159
  hgvsc: ENST00000294576.5:c.1007C>T
  hgvsp: ENSP00000294576.5:p.Pro336Leu
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000131591
  ensembl protein: ENSP00000368629
  ensembl transcript: ENST00000379325
  gene symbol: C1orf159
  hgvsc: ENST00000379325.3:c.*171C>T
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131591
  ensembl transcript: ENST00000465822
  gene symbol: C1orf159
  hgvsc: ENST00000465822.1:n.835C>T
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131591
  ensembl protein: ENSP00000368644
  ensembl transcript: ENST00000379339
  gene symbol: C1orf159
  hgvsc: ENST00000379339.1:c.1115C>T
  hgvsp: ENSP00000368644.1:p.Pro372Leu
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000131591
  ensembl protein: ENSP00000463144
  ensembl transcript: ENST00000467751
  gene symbol: C1orf159
  hgvsc: ENST00000467751.1:c.*502C>T
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131591
  ensembl protein: ENSP00000368624
  ensembl transcript: ENST00000379320
  gene symbol: C1orf159
  hgvsc: ENST00000379320.1:c.1007C>T
  hgvsp: ENSP00000368624.1:p.Pro336Leu
  variant of: http://identifiers.org/hgnc/26062
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11906
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4474
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29728
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5062
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1415
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1464
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro190Leu
num of homozygotes: 0
population: African
population: South Asian
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: G
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD

1-1018307-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1018307
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 1018307
    reference: chr 1
allele count: 24
allele frequency: 4.412900378773949e-4
allele num: 54386
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131591
  ensembl protein: ENSP00000294576
  ensembl transcript: ENST00000294576
  gene symbol: C1orf159
  hgvsc: ENST00000294576.5:c.1001C>A
  hgvsp: ENSP00000294576.5:p.Ala334Asp
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131591
  ensembl protein: ENSP00000368644
  ensembl transcript: ENST00000379339
  gene symbol: C1orf159
  hgvsc: ENST00000379339.1:c.1109C>A
  hgvsp: ENSP00000368644.1:p.Ala370Asp
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000131591
  ensembl protein: ENSP00000368629
  ensembl transcript: ENST00000379325
  gene symbol: C1orf159
  hgvsc: ENST00000379325.3:c.*165C>A
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131591
  ensembl transcript: ENST00000487177
  gene symbol: C1orf159
  hgvsc: ENST00000487177.1:n.2213C>A
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000131591
  ensembl protein: ENSP00000462798
  ensembl transcript: ENST00000477196
  gene symbol: C1orf159
  hgvsc: ENST00000477196.1:c.*1650C>A
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131591
  ensembl transcript: ENST00000465822
  gene symbol: C1orf159
  hgvsc: ENST00000465822.1:n.829C>A
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000131591
  ensembl protein: ENSP00000400736
  ensembl transcript: ENST00000421241
  gene symbol: C1orf159
  hgvsc: ENST00000421241.2:c.563C>A
  hgvsp: ENSP00000400736.2:p.Ala188Asp
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131591
  ensembl protein: ENSP00000392290
  ensembl transcript: ENST00000448924
  gene symbol: C1orf159
  hgvsc: ENST00000448924.1:c.1109C>A
  hgvsp: ENSP00000392290.1:p.Ala370Asp
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131591
  ensembl protein: ENSP00000368624
  ensembl transcript: ENST00000379320
  gene symbol: C1orf159
  hgvsc: ENST00000379320.1:c.1001C>A
  hgvsp: ENSP00000368624.1:p.Ala334Asp
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000131591
  ensembl protein: ENSP00000390635
  ensembl transcript: ENST00000434641
  gene symbol: C1orf159
  hgvsc: ENST00000434641.1:c.660C>A
  hgvsp: ENSP00000390635.1:p.Cys220Ter
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131591
  ensembl transcript: ENST00000464905
  gene symbol: C1orf159
  hgvsc: ENST00000464905.1:n.219C>A
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131591
  ensembl protein: ENSP00000368623
  ensembl transcript: ENST00000379319
  gene symbol: C1orf159
  hgvsc: ENST00000379319.1:c.563C>A
  hgvsp: ENSP00000368623.1:p.Ala188Asp
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000131591
  ensembl protein: ENSP00000463144
  ensembl transcript: ENST00000467751
  gene symbol: C1orf159
  hgvsc: ENST00000467751.1:c.*496C>A
  variant of: http://identifiers.org/hgnc/26062
canonical: false
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13188
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 4.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 28678
  bin: 7.5e0
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 5155
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 4100
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4779
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1393
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Cys220Ter
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: Other
population: South Asian
population: European (Finnish)
population: African
population: East Asian
reference allele: G
site quality: MQ
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum

1-1018311-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1018311
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 1018311
    reference: chr 1
allele count: 8
allele frequency: 1.436730002514278e-4
allele num: 55682
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131591
  ensembl protein: ENSP00000294576
  ensembl transcript: ENST00000294576
  gene symbol: C1orf159
  hgvsc: ENST00000294576.5:c.997G>A
  hgvsp: ENSP00000294576.5:p.Ala333Thr
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131591
  ensembl protein: ENSP00000368644
  ensembl transcript: ENST00000379339
  gene symbol: C1orf159
  hgvsc: ENST00000379339.1:c.1105G>A
  hgvsp: ENSP00000368644.1:p.Ala369Thr
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131591
  ensembl transcript: ENST00000487177
  gene symbol: C1orf159
  hgvsc: ENST00000487177.1:n.2209G>A
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131591
  ensembl protein: ENSP00000392290
  ensembl transcript: ENST00000448924
  gene symbol: C1orf159
  hgvsc: ENST00000448924.1:c.1105G>A
  hgvsp: ENSP00000392290.1:p.Ala369Thr
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000131591
  ensembl protein: ENSP00000400736
  ensembl transcript: ENST00000421241
  gene symbol: C1orf159
  hgvsc: ENST00000421241.2:c.559G>A
  hgvsp: ENSP00000400736.2:p.Ala187Thr
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000131591
  ensembl protein: ENSP00000368629
  ensembl transcript: ENST00000379325
  gene symbol: C1orf159
  hgvsc: ENST00000379325.3:c.*161G>A
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131591
  ensembl protein: ENSP00000390635
  ensembl transcript: ENST00000434641
  gene symbol: C1orf159
  hgvsc: ENST00000434641.1:c.656G>A
  hgvsp: ENSP00000390635.1:p.Arg219His
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131591
  ensembl protein: ENSP00000368624
  ensembl transcript: ENST00000379320
  gene symbol: C1orf159
  hgvsc: ENST00000379320.1:c.997G>A
  hgvsp: ENSP00000368624.1:p.Ala333Thr
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000131591
  ensembl protein: ENSP00000462798
  ensembl transcript: ENST00000477196
  gene symbol: C1orf159
  hgvsc: ENST00000477196.1:c.*1646G>A
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000131591
  ensembl protein: ENSP00000463144
  ensembl transcript: ENST00000467751
  gene symbol: C1orf159
  hgvsc: ENST00000467751.1:c.*492G>A
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131591
  ensembl transcript: ENST00000464905
  gene symbol: C1orf159
  hgvsc: ENST00000464905.1:n.215G>A
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131591
  ensembl protein: ENSP00000368623
  ensembl transcript: ENST00000379319
  gene symbol: C1orf159
  hgvsc: ENST00000379319.1:c.559G>A
  hgvsp: ENSP00000368623.1:p.Ala187Thr
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131591
  ensembl transcript: ENST00000465822
  gene symbol: C1orf159
  hgvsc: ENST00000465822.1:n.825G>A
  variant of: http://identifiers.org/hgnc/26062
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 27876
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4910
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1423
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13583
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3968
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala187Thr
num of homozygotes: 0
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: South Asian
population: Latino
population: East Asian
reference allele: C
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum

1-1018312-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1018312
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 1018312
    reference: chr 1
allele count: 9
allele frequency: 1.594613749114104e-4
allele num: 56440
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131591
  ensembl transcript: ENST00000465822
  gene symbol: C1orf159
  hgvsc: ENST00000465822.1:n.824C>T
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131591
  ensembl protein: ENSP00000368624
  ensembl transcript: ENST00000379320
  gene symbol: C1orf159
  hgvsc: ENST00000379320.1:c.996C>T
  hgvsp: ENST00000379320.1:c.996C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131591
  ensembl protein: ENSP00000294576
  ensembl transcript: ENST00000294576
  gene symbol: C1orf159
  hgvsc: ENST00000294576.5:c.996C>T
  hgvsp: ENST00000294576.5:c.996C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000131591
  ensembl protein: ENSP00000463144
  ensembl transcript: ENST00000467751
  gene symbol: C1orf159
  hgvsc: ENST00000467751.1:c.*491C>T
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131591
  ensembl transcript: ENST00000464905
  gene symbol: C1orf159
  hgvsc: ENST00000464905.1:n.214C>T
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131591
  ensembl protein: ENSP00000390635
  ensembl transcript: ENST00000434641
  gene symbol: C1orf159
  hgvsc: ENST00000434641.1:c.655C>T
  hgvsp: ENSP00000390635.1:p.Arg219Cys
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131591
  ensembl protein: ENSP00000368644
  ensembl transcript: ENST00000379339
  gene symbol: C1orf159
  hgvsc: ENST00000379339.1:c.1104C>T
  hgvsp: ENST00000379339.1:c.1104C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131591
  ensembl protein: ENSP00000392290
  ensembl transcript: ENST00000448924
  gene symbol: C1orf159
  hgvsc: ENST00000448924.1:c.1104C>T
  hgvsp: ENST00000448924.1:c.1104C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131591
  ensembl protein: ENSP00000368623
  ensembl transcript: ENST00000379319
  gene symbol: C1orf159
  hgvsc: ENST00000379319.1:c.558C>T
  hgvsp: ENST00000379319.1:c.558C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000131591
  ensembl protein: ENSP00000462798
  ensembl transcript: ENST00000477196
  gene symbol: C1orf159
  hgvsc: ENST00000477196.1:c.*1645C>T
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000131591
  ensembl protein: ENSP00000400736
  ensembl transcript: ENST00000421241
  gene symbol: C1orf159
  hgvsc: ENST00000421241.2:c.558C>T
  hgvsp: ENST00000421241.2:c.558C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131591
  ensembl transcript: ENST00000487177
  gene symbol: C1orf159
  hgvsc: ENST00000487177.1:n.2208C>T
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000131591
  ensembl protein: ENSP00000368629
  ensembl transcript: ENST00000379325
  gene symbol: C1orf159
  hgvsc: ENST00000379325.3:c.*160C>T
  variant of: http://identifiers.org/hgnc/26062
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1536
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4913
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1403
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5450
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 27689
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3927
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg219Cys
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: G
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum

1-1018318-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1018318
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 1018318
    reference: chr 1
allele count: 1
allele frequency: 1.721763085399449e-5
allele num: 58080
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000131591
  ensembl protein: ENSP00000462798
  ensembl transcript: ENST00000477196
  gene symbol: C1orf159
  hgvsc: ENST00000477196.1:c.*1639G>A
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131591
  ensembl protein: ENSP00000294576
  ensembl transcript: ENST00000294576
  gene symbol: C1orf159
  hgvsc: ENST00000294576.5:c.990G>A
  hgvsp: ENST00000294576.5:c.990G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131591
  ensembl transcript: ENST00000487177
  gene symbol: C1orf159
  hgvsc: ENST00000487177.1:n.2202G>A
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131591
  ensembl protein: ENSP00000392290
  ensembl transcript: ENST00000448924
  gene symbol: C1orf159
  hgvsc: ENST00000448924.1:c.1098G>A
  hgvsp: ENST00000448924.1:c.1098G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131591
  ensembl protein: ENSP00000368623
  ensembl transcript: ENST00000379319
  gene symbol: C1orf159
  hgvsc: ENST00000379319.1:c.552G>A
  hgvsp: ENST00000379319.1:c.552G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131591
  ensembl transcript: ENST00000465822
  gene symbol: C1orf159
  hgvsc: ENST00000465822.1:n.818G>A
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131591
  ensembl protein: ENSP00000368644
  ensembl transcript: ENST00000379339
  gene symbol: C1orf159
  hgvsc: ENST00000379339.1:c.1098G>A
  hgvsp: ENST00000379339.1:c.1098G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000131591
  ensembl protein: ENSP00000463144
  ensembl transcript: ENST00000467751
  gene symbol: C1orf159
  hgvsc: ENST00000467751.1:c.*485G>A
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000131591
  ensembl protein: ENSP00000400736
  ensembl transcript: ENST00000421241
  gene symbol: C1orf159
  hgvsc: ENST00000421241.2:c.552G>A
  hgvsp: ENST00000421241.2:c.552G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131591
  ensembl protein: ENSP00000368624
  ensembl transcript: ENST00000379320
  gene symbol: C1orf159
  hgvsc: ENST00000379320.1:c.990G>A
  hgvsp: ENST00000379320.1:c.990G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131591
  ensembl protein: ENSP00000390635
  ensembl transcript: ENST00000434641
  gene symbol: C1orf159
  hgvsc: ENST00000434641.1:c.649G>A
  hgvsp: ENSP00000390635.1:p.Gly217Arg
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000131591
  ensembl protein: ENSP00000368629
  ensembl transcript: ENST00000379325
  gene symbol: C1orf159
  hgvsc: ENST00000379325.3:c.*154G>A
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131591
  ensembl transcript: ENST00000464905
  gene symbol: C1orf159
  hgvsc: ENST00000464905.1:n.208G>A
  variant of: http://identifiers.org/hgnc/26062
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14444
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5623
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1410
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3819
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5002
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1472
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly217Arg
num of homozygotes: 0
population: Other
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
reference allele: C
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum

1-1018326-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1018326
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 1018326
    reference: chr 1
allele count: 3
allele frequency: 5.09614731263165e-5
allele num: 58868
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131591
  ensembl transcript: ENST00000465822
  gene symbol: C1orf159
  hgvsc: ENST00000465822.1:n.810A>G
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131591
  ensembl protein: ENSP00000392290
  ensembl transcript: ENST00000448924
  gene symbol: C1orf159
  hgvsc: ENST00000448924.1:c.1090A>G
  hgvsp: ENSP00000392290.1:p.Arg364Gly
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131591
  ensembl protein: ENSP00000368644
  ensembl transcript: ENST00000379339
  gene symbol: C1orf159
  hgvsc: ENST00000379339.1:c.1090A>G
  hgvsp: ENSP00000368644.1:p.Arg364Gly
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000131591
  ensembl protein: ENSP00000400736
  ensembl transcript: ENST00000421241
  gene symbol: C1orf159
  hgvsc: ENST00000421241.2:c.544A>G
  hgvsp: ENSP00000400736.2:p.Arg182Gly
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131591
  ensembl transcript: ENST00000464905
  gene symbol: C1orf159
  hgvsc: ENST00000464905.1:n.200A>G
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131591
  ensembl protein: ENSP00000368624
  ensembl transcript: ENST00000379320
  gene symbol: C1orf159
  hgvsc: ENST00000379320.1:c.982A>G
  hgvsp: ENSP00000368624.1:p.Arg328Gly
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131591
  ensembl protein: ENSP00000294576
  ensembl transcript: ENST00000294576
  gene symbol: C1orf159
  hgvsc: ENST00000294576.5:c.982A>G
  hgvsp: ENSP00000294576.5:p.Arg328Gly
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000131591
  ensembl protein: ENSP00000463144
  ensembl transcript: ENST00000467751
  gene symbol: C1orf159
  hgvsc: ENST00000467751.1:c.*477A>G
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131591
  ensembl protein: ENSP00000368623
  ensembl transcript: ENST00000379319
  gene symbol: C1orf159
  hgvsc: ENST00000379319.1:c.544A>G
  hgvsp: ENSP00000368623.1:p.Arg182Gly
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131591
  ensembl protein: ENSP00000390635
  ensembl transcript: ENST00000434641
  gene symbol: C1orf159
  hgvsc: ENST00000434641.1:c.641A>G
  hgvsp: ENSP00000390635.1:p.Gln214Arg
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000131591
  ensembl protein: ENSP00000462798
  ensembl transcript: ENST00000477196
  gene symbol: C1orf159
  hgvsc: ENST00000477196.1:c.*1631A>G
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000131591
  ensembl protein: ENSP00000368629
  ensembl transcript: ENST00000379325
  gene symbol: C1orf159
  hgvsc: ENST00000379325.3:c.*146A>G
  variant of: http://identifiers.org/hgnc/26062
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131591
  ensembl transcript: ENST00000487177
  gene symbol: C1orf159
  hgvsc: ENST00000487177.1:n.2194A>G
  variant of: http://identifiers.org/hgnc/26062
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13527
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Arg182Gly
num of homozygotes: 0
reference allele: T

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 102
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 124
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2236
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.07676e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.89e0

MQ
type: SiteQuality
SIO_000300: 5.896e1

QD
type: SiteQuality
SIO_000300: 8.699999999999999e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.132e0

MQRankSum
type: SiteQuality
SIO_000300: -3.55e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.43e0

VQSLOD
type: SiteQuality
SIO_000300: -2.514e0

FS
type: SiteQuality
SIO_000300: 1.4924e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.59e-2

Latino
type: Population
allele count: 50
allele frequency: 5.813953488372093e-1
allele num: 86
num of homozygotes: 10

African
type: Population
allele count: 56
allele frequency: 3.333333333333333e-1
allele num: 168
num of homozygotes: 4

East Asian
type: Population
allele count: 102
allele frequency: 7.96875e-1
allele num: 128
num of homozygotes: 42

European (Non-Finnish)
type: Population
allele count: 1423
allele frequency: 6.065643648763853e-1
allele num: 2346
num of homozygotes: 434

Other
type: Population
allele count: 58
allele frequency: 5.370370370370371e-1
allele num: 108
num of homozygotes: 15

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.29e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.05e0

FS
type: SiteQuality
SIO_000300: 1.786e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.53e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.22e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.29e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.01e-1

DP
type: SiteQuality
SIO_000300: 1.23478e5

QD
type: SiteQuality
SIO_000300: 2.239e1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 170
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 8.748906386701663e-4
allele num: 2286
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 2.325581395348837e-2
allele num: 86
num of homozygotes: 0

South Asian
type: Population
allele count: 15
allele frequency: 2.22485909225749e-3
allele num: 6742
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.971e1

QD
type: SiteQuality
SIO_000300: 1.812e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.61e-1

FS
type: SiteQuality
SIO_000300: 1.754e0

MQRankSum
type: SiteQuality
SIO_000300: 3.01e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.06e0

DP
type: SiteQuality
SIO_000300: 1.09594e5

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.04e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.88e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.93e-1

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2276
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 86
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 172
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 102
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 126
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 7.2e0

VQSLOD
type: SiteQuality
SIO_000300: -2.295e0

DP
type: SiteQuality
SIO_000300: 1.09775e5

MQRankSum
type: SiteQuality
SIO_000300: 1.74e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 4.19e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.99e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.093e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.08e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.189e0

European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 86
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.449695563931574e-4
allele num: 6898
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 126
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 8.445945945945946e-4
allele num: 2368
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.31e0

FS
type: SiteQuality
SIO_000300: 1.133e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.86e-1

QD
type: SiteQuality
SIO_000300: 1.29e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.17374e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.94e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 7.76e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.72e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.12e-1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 182
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 128
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

South Asian
type: Population
allele count: 5
allele frequency: 7.064142413111048e-4
allele num: 7078
num of homozygotes: 1

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 4.098360655737705e-4
allele num: 2440
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.59e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.81e-1

DP
type: SiteQuality
SIO_000300: 1.25792e5

MQRankSum
type: SiteQuality
SIO_000300: -9.8e-2

FS
type: SiteQuality
SIO_000300: 4.188e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.89e-2

VQSLOD
type: SiteQuality
SIO_000300: -2.371e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.6e-1

QD
type: SiteQuality
SIO_000300: 3.228e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2518
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.386962552011096e-4
allele num: 7210
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 88
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 130
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 110
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 8.599999999999999e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -3.9e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.76e-2

QD
type: SiteQuality
SIO_000300: 5.66e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.4e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -1.727e0

FS
type: SiteQuality
SIO_000300: 7.686e0

DP
type: SiteQuality
SIO_000300: 1.29115e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.23e-1

European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2518
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 110
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 184
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.386962552011096e-4
allele num: 7210
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.4e0

MQRankSum
type: SiteQuality
SIO_000300: 8.599999999999999e-2

FS
type: SiteQuality
SIO_000300: 7.686e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 5.66e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.76e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -3.9e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.727e0

DP
type: SiteQuality
SIO_000300: 1.29115e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.23e-1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 184
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 90
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2532
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 110
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.34e0

MQRankSum
type: SiteQuality
SIO_000300: -4.6e-2

DP
type: SiteQuality
SIO_000300: 1.29705e5

BaseQRankSum
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VQSLOD
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FS
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MQ
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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QD
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InbreedingCoeff
type: SiteQuality
SIO_000300: -2.8e-2

African
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Other
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Latino
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European (Finnish)
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allele frequency: NaN
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East Asian
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FS
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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MQ
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QD
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MQRankSum
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BaseQRankSum
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InbreedingCoeff
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DP
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VQSLOD
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ReadPosRankSum
type: SiteQuality
SIO_000300: -8.22e-1

European (Non-Finnish)
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African
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Other
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Latino
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East Asian
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BaseQRankSum
type: SiteQuality
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ReadPosRankSum
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InbreedingCoeff
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MQ
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ClippingRankSum
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FS
type: SiteQuality
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VQSLOD
type: SiteQuality
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MQRankSum
type: SiteQuality
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DP
type: SiteQuality
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QD
type: SiteQuality
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European (Finnish)
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East Asian
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European (Non-Finnish)
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Other
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Latino
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DP
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MQRankSum
type: SiteQuality
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VQSLOD
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InbreedingCoeff
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BaseQRankSum
type: SiteQuality
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QD
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ClippingRankSum
type: SiteQuality
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FS
type: SiteQuality
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MQ
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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European (Non-Finnish)
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African
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Latino
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East Asian
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South Asian
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ClippingRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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VQSLOD
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InbreedingCoeff
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 2.0e-1

ReadPosRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.915e1

DP
type: SiteQuality
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FS
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.262e1

East Asian
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Other
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South Asian
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European (Non-Finnish)
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allele frequency: 5.159958720330237e-4
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Latino
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ReadPosRankSum
type: SiteQuality
SIO_000300: 1.17e0

MQRankSum
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SIO_000300: 1.47e0

DP
type: SiteQuality
SIO_000300: 8.8441e4

VQSLOD
type: SiteQuality
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QD
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InbreedingCoeff
type: SiteQuality
SIO_000300: -2.76e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 1.16e0

FS
type: SiteQuality
SIO_000300: 3.006e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.134e0

MQ
type: SiteQuality
SIO_000300: 5.924e1

African
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Other
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South Asian
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allele frequency: 3.68052999631947e-4
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European (Non-Finnish)
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allele num: 1878
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East Asian
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MQ
type: SiteQuality
SIO_000300: 5.884e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.89e-1

FS
type: SiteQuality
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MQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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VQSLOD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 8.5423e4

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.65e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.16e-1

QD
type: SiteQuality
SIO_000300: 9.949999999999999e0

Other
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Latino
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allele frequency: 2.777777777777778e-2
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African
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East Asian
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South Asian
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ReadPosRankSum
type: SiteQuality
SIO_000300: -2.12e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.54e-1

DP
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QD
type: SiteQuality
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MQRankSum
type: SiteQuality
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FS
type: SiteQuality
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InbreedingCoeff
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VQSLOD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

East Asian
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Latino
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African
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South Asian
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Other
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BaseQRankSum
type: SiteQuality
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ReadPosRankSum
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FS
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MQRankSum
type: SiteQuality
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VQSLOD
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MQ
type: SiteQuality
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DP
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ClippingRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -5.39e-2

QD
type: SiteQuality
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East Asian
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Latino
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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Other
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South Asian
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InbreedingCoeff
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MQ
type: SiteQuality
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FS
type: SiteQuality
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VQSLOD
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QD
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MQRankSum
type: SiteQuality
SIO_000300: 9.22e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.98e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -9.22e-1

ClippingRankSum
type: SiteQuality
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DP
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East Asian
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allele frequency: 8.333333333333333e-2
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Other
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 24
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European (Finnish)
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allele count: 0
allele frequency: NaN
allele num: 0
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 216
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MQ
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QD
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FS
type: SiteQuality
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VQSLOD
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InbreedingCoeff
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DP
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African
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Other
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European (Non-Finnish)
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East Asian
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South Asian
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MQ
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VQSLOD
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FS
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MQRankSum
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DP
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ClippingRankSum
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ReadPosRankSum
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InbreedingCoeff
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QD
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BaseQRankSum
type: SiteQuality
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Latino
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South Asian
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Other
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African
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European (Non-Finnish)
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InbreedingCoeff
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VQSLOD
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BaseQRankSum
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MQRankSum
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DP
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ReadPosRankSum
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MQ
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FS
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QD
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ClippingRankSum
type: SiteQuality
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East Asian
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Other
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Latino
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African
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South Asian
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BaseQRankSum
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QD
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VQSLOD
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ReadPosRankSum
type: SiteQuality
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FS
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InbreedingCoeff
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MQRankSum
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MQ
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DP
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ClippingRankSum
type: SiteQuality
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East Asian
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allele frequency: 0.0e0
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Latino
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allele frequency: NaN
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European (Non-Finnish)
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Other
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European (Finnish)
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allele frequency: NaN
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MQRankSum
type: SiteQuality
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ReadPosRankSum
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FS
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QD
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BaseQRankSum
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InbreedingCoeff
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DP
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MQ
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VQSLOD
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ClippingRankSum
type: SiteQuality
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European (Finnish)
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allele frequency: NaN
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African
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allele num: 4
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Latino
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allele frequency: NaN
allele num: 0
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East Asian
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Other
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InbreedingCoeff
type: SiteQuality
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MQRankSum
type: SiteQuality
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ReadPosRankSum
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QD
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MQ
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ClippingRankSum
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DP
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BaseQRankSum
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FS
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VQSLOD
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East Asian
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African
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Other
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European (Finnish)
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allele frequency: NaN
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South Asian
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allele frequency: 1.428571428571429e-2
allele num: 70
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InbreedingCoeff
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FS
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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MQ
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VQSLOD
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DP
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ClippingRankSum
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QD
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MQRankSum
type: SiteQuality
SIO_000300: 2.96e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.231e0

Latino
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allele frequency: NaN
allele num: 0
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 12
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European (Finnish)
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allele frequency: NaN
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Other
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allele frequency: NaN
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 6
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MQ
type: SiteQuality
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VQSLOD
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DP
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QD
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FS
type: SiteQuality
SIO_000300: 9.82e-1

BaseQRankSum
type: SiteQuality
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InbreedingCoeff
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ReadPosRankSum
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MQRankSum
type: SiteQuality
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ClippingRankSum
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SIO_000300: 3.58e-1

Other
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East Asian
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South Asian
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allele frequency: 0.0e0
allele num: 220
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African
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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MQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 3.979e0

DP
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -7.770000000000001e-2

QD
type: SiteQuality
SIO_000300: 9.890000000000001e0

MQ
type: SiteQuality
SIO_000300: 5.604e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.88e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.06e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.06e-1

East Asian
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allele frequency: 0.0e0
allele num: 58
num of homozygotes: 0

African
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
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South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 816
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European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 300
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 5.72e-1

VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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QD
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SIO_000300: 1.616e1

ReadPosRankSum
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SIO_000300: 0.0e0

FS
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SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 5.2721e4

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 2.358490566037736e-3
allele num: 848
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African
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allele frequency: 0.0e0
allele num: 40
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 330
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
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MQ
type: SiteQuality
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QD
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DP
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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MQRankSum
type: SiteQuality
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FS
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 7.29e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.61e-1

VQSLOD
type: SiteQuality
SIO_000300: -8.229e-1

European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 346
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Latino
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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InbreedingCoeff
type: SiteQuality
SIO_000300: -7.439999999999999e-2

VQSLOD
type: SiteQuality
SIO_000300: 5.649999999999999e-1

FS
type: SiteQuality
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QD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.516e1

DP
type: SiteQuality
SIO_000300: 5.4238e4

African
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allele frequency: 0.0e0
allele num: 52
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East Asian
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allele frequency: 0.0e0
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
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South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 1216
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VQSLOD
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: -1.591e0

FS
type: SiteQuality
SIO_000300: 3.136e0

ReadPosRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.84e-1

DP
type: SiteQuality
SIO_000300: 5.9431e4

BaseQRankSum
type: SiteQuality
SIO_000300: -1.77e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.630000000000001e-2

QD
type: SiteQuality
SIO_000300: 1.393e1

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 1464
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4
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Latino
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allele frequency: 0.0e0
allele num: 18
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 26
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African
type: Population
allele count: 0
allele frequency: 0.0e0
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ClippingRankSum
type: SiteQuality
SIO_000300: -4.21e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.21e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.79e-2

MQ
type: SiteQuality
SIO_000300: 4.984e1

QD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 6.3451e4

VQSLOD
type: SiteQuality
SIO_000300: 1.94e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.21e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.21e-1

South Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 546
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East Asian
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allele frequency: 0.0e0
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Other
type: Population
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MQ
type: SiteQuality
SIO_000300: 5.766e1

ClippingRankSum
type: SiteQuality
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DP
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -7.86e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.8e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.27e0

QD
type: SiteQuality
SIO_000300: 1.816e1

VQSLOD
type: SiteQuality
SIO_000300: 3.93e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.8e-1

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 2
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Latino
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allele frequency: 3.846153846153846e-2
allele num: 26
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European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 584
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East Asian
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allele frequency: 0.0e0
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South Asian
type: Population
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allele frequency: 5.793742757821553e-3
allele num: 1726
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InbreedingCoeff
type: SiteQuality
SIO_000300: -7.98e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.46e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.05e-1

VQSLOD
type: SiteQuality
SIO_000300: -5.89e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 3.12e-1

FS
type: SiteQuality
SIO_000300: 1.4722e1

DP
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.085e1

BaseQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

Other
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 32
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European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
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South Asian
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allele count: 0
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allele num: 2274
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MQ
type: SiteQuality
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FS
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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VQSLOD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 7.7772e4

ClippingRankSum
type: SiteQuality
SIO_000300: 6.7e-2

ReadPosRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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QD
type: SiteQuality
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African
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Latino
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Other
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European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.030927835051546e-3
allele num: 970
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BaseQRankSum
type: SiteQuality
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MQ
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -7.75e-2

MQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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FS
type: SiteQuality
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QD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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DP
type: SiteQuality
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VQSLOD
type: SiteQuality
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European (Finnish)
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allele frequency: 0.0e0
allele num: 2
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Latino
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allele num: 44
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Other
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South Asian
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allele frequency: 2.577319587628866e-4
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European (Non-Finnish)
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allele frequency: 6.258692628650904e-3
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ClippingRankSum
type: SiteQuality
SIO_000300: -7.83e-1

ReadPosRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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QD
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 3.73e-1

DP
type: SiteQuality
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VQSLOD
type: SiteQuality
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FS
type: SiteQuality
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MQ
type: SiteQuality
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African
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allele num: 168
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 1470
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Latino
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South Asian
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Other
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MQ
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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QD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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MQRankSum
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ClippingRankSum
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FS
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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DP
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VQSLOD
type: SiteQuality
SIO_000300: 4.72e-1

African
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East Asian
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South Asian
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European (Non-Finnish)
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European (Finnish)
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BaseQRankSum
type: SiteQuality
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FS
type: SiteQuality
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DP
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ClippingRankSum
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MQRankSum
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MQ
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InbreedingCoeff
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QD
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ReadPosRankSum
type: SiteQuality
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VQSLOD
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Other
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African
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East Asian
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European (Finnish)
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European (Non-Finnish)
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MQ
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InbreedingCoeff
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ClippingRankSum
type: SiteQuality
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ReadPosRankSum
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VQSLOD
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QD
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FS
type: SiteQuality
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MQRankSum
type: SiteQuality
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BaseQRankSum
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DP
type: SiteQuality
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African
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South Asian
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European (Non-Finnish)
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Latino
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Other
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DP
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QD
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VQSLOD
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ClippingRankSum
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FS
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BaseQRankSum
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InbreedingCoeff
type: SiteQuality
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MQ
type: SiteQuality
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MQRankSum
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ReadPosRankSum
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East Asian
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African
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European (Finnish)
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allele frequency: NaN
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Other
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allele num: 90
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South Asian
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VQSLOD
type: SiteQuality
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FS
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 6.16e-1

MQRankSum
type: SiteQuality
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BaseQRankSum
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MQ
type: SiteQuality
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DP
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QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -6.45e-2

East Asian
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European (Finnish)
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allele frequency: NaN
allele num: 0
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Latino
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allele frequency: 0.0e0
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African
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South Asian
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QD
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InbreedingCoeff
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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DP
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FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
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ReadPosRankSum
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MQ
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MQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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South Asian
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East Asian
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European (Non-Finnish)
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allele count: 0
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European (Finnish)
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allele count: 0
allele frequency: NaN
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Other
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ClippingRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: -1.457e0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -2.538e0

MQRankSum
type: SiteQuality
SIO_000300: -2.51e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.370000000000001e-2

QD
type: SiteQuality
SIO_000300: 1.227e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.1793e5

European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 252
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 2032
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South Asian
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allele frequency: 1.842978252856616e-4
allele num: 5426
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.344e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.07e-2

VQSLOD
type: SiteQuality
SIO_000300: -4.287e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.03e0

DP
type: SiteQuality
SIO_000300: 1.11941e5

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.36e0

MQRankSum
type: SiteQuality
SIO_000300: 3.54e-1

QD
type: SiteQuality
SIO_000300: 9.08e0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 82
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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South Asian
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allele frequency: 1.858736059479554e-4
allele num: 5380
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FS
type: SiteQuality
SIO_000300: 1.585e0

MQRankSum
type: SiteQuality
SIO_000300: 1.57e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
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ReadPosRankSum
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InbreedingCoeff
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SIO_000300: -5.98e-2

DP
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SIO_000300: 1.11404e5

VQSLOD
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QD
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SIO_000300: 1.043e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.58e-1

South Asian
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allele frequency: 1.865671641791045e-4
allele num: 5360
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 4.935834155972359e-4
allele num: 2026
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East Asian
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Other
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FS
type: SiteQuality
SIO_000300: 9.5e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.22e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.36e-1

ClippingRankSum
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SIO_000300: 3.36e-1

InbreedingCoeff
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SIO_000300: -5.88e-2

QD
type: SiteQuality
SIO_000300: 1.042e1

BaseQRankSum
type: SiteQuality
SIO_000300: 8.29e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.1e-2

DP
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SIO_000300: 1.09976e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 4342
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 128
num of homozygotes: 0

African
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allele frequency: 4.424778761061947e-3
allele num: 226
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 70
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 8.4174e4

QD
type: SiteQuality
SIO_000300: 1.263e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
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SIO_000300: 1.5e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.8e-2

MQRankSum
type: SiteQuality
SIO_000300: -3.23e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.1e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.31e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.94e-1

African
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allele count: 0
allele frequency: 0.0e0
allele num: 200
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 1182
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 40
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 6.2437e4

MQRankSum
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SIO_000300: 0.0e0

VQSLOD
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SIO_000300: -1.894e0

ClippingRankSum
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SIO_000300: -1.38e0

InbreedingCoeff
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SIO_000300: -6.279999999999999e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
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SIO_000300: 0.0e0

ReadPosRankSum
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SIO_000300: 1.38e0

QD
type: SiteQuality
SIO_000300: 9.109999999999999e0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.2e-1

European (Finnish)
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allele frequency: 2.5e-1
allele num: 4
num of homozygotes: 0

European (Non-Finnish)
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allele count: 7
allele frequency: 9.186351706036745e-3
allele num: 762
num of homozygotes: 0

Other
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allele frequency: 5.555555555555555e-2
allele num: 36
num of homozygotes: 0

Latino
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num of homozygotes: 0

ClippingRankSum
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SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 5.4113e4

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.21e-1

FS
type: SiteQuality
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VQSLOD
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QD
type: SiteQuality
SIO_000300: 1.458e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.09e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 1.13e0

MQRankSum
type: SiteQuality
SIO_000300: 2.78e-1

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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South Asian
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allele frequency: 5.574136008918618e-4
allele num: 1794
num of homozygotes: 0

African
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allele frequency: 8.928571428571428e-3
allele num: 112
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 5.3727e4

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.909999999999999e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 4.06e-1

MQRankSum
type: SiteQuality
SIO_000300: -5.46e-1

FS
type: SiteQuality
SIO_000300: 5.83e-1

ReadPosRankSum
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.352e1

VQSLOD
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SIO_000300: -5.131e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.12e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

European (Finnish)
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allele frequency: 0.0e0
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South Asian
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allele frequency: 1.847290640394089e-3
allele num: 1624
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African
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.474926253687316e-3
allele num: 678
num of homozygotes: 0

FS
type: SiteQuality
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VQSLOD
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MQRankSum
type: SiteQuality
SIO_000300: -7.31e-1

BaseQRankSum
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MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
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SIO_000300: -7.33e-2

DP
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SIO_000300: 5.3194e4

ClippingRankSum
type: SiteQuality
SIO_000300: 7.27e-1

QD
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ReadPosRankSum
type: SiteQuality
SIO_000300: -5.83e-1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 8934
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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African
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allele num: 2696
num of homozygotes: 0

South Asian
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allele num: 8042
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.563e0

QD
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ReadPosRankSum
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VQSLOD
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InbreedingCoeff
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DP
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MQRankSum
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BaseQRankSum
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MQ
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ClippingRankSum
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SIO_000300: 5.91e-1

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele num: 8938
num of homozygotes: 0

European (Finnish)
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Other
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South Asian
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African
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Latino
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East Asian
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DP
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MQ
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InbreedingCoeff
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BaseQRankSum
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MQRankSum
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VQSLOD
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FS
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ReadPosRankSum
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QD
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ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele num: 198
num of homozygotes: 0

European (Finnish)
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African
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European (Non-Finnish)
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East Asian
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South Asian
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Latino
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VQSLOD
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MQRankSum
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InbreedingCoeff
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ClippingRankSum
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BaseQRankSum
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ReadPosRankSum
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DP
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MQ
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QD
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FS
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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Other
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Latino
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European (Finnish)
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East Asian
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African
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South Asian
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allele frequency: 1.238850346878097e-4
allele num: 8072
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.432e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.21e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.285e-1

MQ
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SIO_000300: 5.968e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.2e0

BaseQRankSum
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SIO_000300: -1.562e0

DP
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SIO_000300: 5.15836e5

MQRankSum
type: SiteQuality
SIO_000300: 5.47e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.551e0

QD
type: SiteQuality
SIO_000300: 1.14e1

GenotypeDepth
all individuals: 229
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variant carriers: 0

GenotypeDepth
all individuals: 315
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 19
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variant carriers: 0

GenotypeQuality
all individuals: 5168
bin: 6.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 196
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9476
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 180
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 2792
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-2

ReadPosRankSum
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SIO_000300: 3.61e-1

BaseQRankSum
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SIO_000300: 2.71e0

MQRankSum
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SIO_000300: 1.6e-2

VQSLOD
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SIO_000300: 4.21e0

FS
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SIO_000300: 0.0e0

DP
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SIO_000300: 5.34598e5

QD
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SIO_000300: 1.374e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.48e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 6

GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8128
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2814
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 920
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 186
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 200
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 2.083333333333333e-3
allele num: 960
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9614
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.06e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.58e-1

QD
type: SiteQuality
SIO_000300: 1.136e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.06e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.88e-2

FS
type: SiteQuality
SIO_000300: 2.297e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.58e-1

DP
type: SiteQuality
SIO_000300: 5.38301e5

VQSLOD
type: SiteQuality
SIO_000300: 1.42e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 2

GenotypeQuality
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GenotypeQuality
all individuals: 1358
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 166
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2854
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10028
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 204
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 2.85171102661597e-3
allele num: 1052
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 222
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1002
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.231e0

QD
type: SiteQuality
SIO_000300: 1.138e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.44e-1

FS
type: SiteQuality
SIO_000300: 5.75e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.22e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.36e0

DP
type: SiteQuality
SIO_000300: 5.65069e5

ClippingRankSum
type: SiteQuality
SIO_000300: 2.31e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.39e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeDepth
all individuals: 54
bin: 7.75e1
variant carriers: 7

GenotypeDepth
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variant carriers: 2

GenotypeQuality
all individuals: 93
bin: 4.75e1
variant carriers: 2

GenotypeQuality
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GenotypeQuality
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variant carriers: 9

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 5

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 4

GenotypeQuality
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GenotypeQuality
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bin: 1.75e1
variant carriers: 8

GenotypeQuality
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GenotypeQuality
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variant carriers: 9

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 1.25e1
variant carriers: 4

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 14

GenotypeQuality
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bin: 7.75e1
variant carriers: 4

GenotypeQuality
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variant carriers: 5

GenotypeQuality
all individuals: 1358
bin: 9.75e1
variant carriers: 201

GenotypeQuality
all individuals: 1214
bin: 2.75e1
variant carriers: 7

African
type: Population
allele count: 1
allele frequency: 3.50385423966363e-4
allele num: 2854
num of homozygotes: 0

Latino
type: Population
allele count: 15
allele frequency: 1.425855513307985e-2
allele num: 1052
num of homozygotes: 0

South Asian
type: Population
allele count: 112
allele frequency: 1.36518771331058e-2
allele num: 8204
num of homozygotes: 1

Other
type: Population
allele count: 1
allele frequency: 4.901960784313725e-3
allele num: 204
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 222
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 71
allele frequency: 7.080175508575987e-3
allele num: 10028
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 9.98003992015968e-4
allele num: 1002
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.31e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.44e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.39e-2

QD
type: SiteQuality
SIO_000300: 1.138e1

VQSLOD
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SIO_000300: 3.36e0

DP
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SIO_000300: 5.65069e5

MQRankSum
type: SiteQuality
SIO_000300: 3.22e-1

BaseQRankSum
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SIO_000300: -1.231e0

FS
type: SiteQuality
SIO_000300: 5.75e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 80
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GenotypeQuality
all individuals: 1000
bin: 3.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2934
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1100
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1164
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 248
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8252
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 2.820609251598345e-4
allele num: 10636
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 210
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.78e-1

BaseQRankSum
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ReadPosRankSum
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VQSLOD
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InbreedingCoeff
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SIO_000300: -3.26e-2

MQ
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SIO_000300: 6.0e1

ClippingRankSum
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SIO_000300: -1.398e0

QD
type: SiteQuality
SIO_000300: 1.575e1

FS
type: SiteQuality
SIO_000300: 4.011e0

DP
type: SiteQuality
SIO_000300: 5.7733e5

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 89
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2948
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8276
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 1138
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 1228
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 10910
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 212
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.2e-1

InbreedingCoeff
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QD
type: SiteQuality
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FS
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BaseQRankSum
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ClippingRankSum
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SIO_000300: 3.55e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.982e0

DP
type: SiteQuality
SIO_000300: 5.83901e5

MQRankSum
type: SiteQuality
SIO_000300: -7.47e-1

MQ
type: SiteQuality
SIO_000300: 5.79e1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
all individuals: 306
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GenotypeQuality
all individuals: 291
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variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1332
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8320
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 212
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1222
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3014
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 8.821453775582216e-5
allele num: 11336
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 288
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -3.82e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
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SIO_000300: 3.82e-1

QD
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FS
type: SiteQuality
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VQSLOD
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BaseQRankSum
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SIO_000300: -2.78e-1

InbreedingCoeff
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SIO_000300: -2.96e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.78e-1

DP
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SIO_000300: 5.93637e5

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
variant carriers: 1

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 11944
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 214
num of homozygotes: 0

African
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allele count: 1
allele frequency: 3.253090435914119e-4
allele num: 3074
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 1480
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

ClippingRankSum
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SIO_000300: 0.0e0

FS
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BaseQRankSum
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InbreedingCoeff
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MQ
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DP
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QD
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SIO_000300: 1.205e1

VQSLOD
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SIO_000300: 3.3e-1

MQRankSum
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SIO_000300: -5.72e-1

ReadPosRankSum
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SIO_000300: -2.54e-1

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 4

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 1570
num of homozygotes: 0

East Asian
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allele frequency: 6.925207756232687e-4
allele num: 1444
num of homozygotes: 0

Other
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8414
num of homozygotes: 0

European (Non-Finnish)
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allele count: 4
allele frequency: 3.265839320705421e-4
allele num: 12248
num of homozygotes: 0

African
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ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

QD
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ReadPosRankSum
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SIO_000300: -1.85e-1

VQSLOD
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BaseQRankSum
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InbreedingCoeff
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SIO_000300: -2.61e-2

MQRankSum
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FS
type: SiteQuality
SIO_000300: 1.591e0

DP
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SIO_000300: 6.19057e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 2118
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 6.411900487304436e-5
allele num: 15596
num of homozygotes: 0

InbreedingCoeff
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SIO_000300: -1.84e-2

VQSLOD
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QD
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MQRankSum
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MQ
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DP
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ClippingRankSum
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FS
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SIO_000300: 5.219e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.52e-1

BaseQRankSum
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SIO_000300: 1.94e-1

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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South Asian
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Latino
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allele frequency: 0.0e0
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African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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QD
type: SiteQuality
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VQSLOD
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MQRankSum
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InbreedingCoeff
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FS
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ClippingRankSum
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MQ
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DP
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BaseQRankSum
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 25264
num of homozygotes: 0

Latino
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East Asian
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Other
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South Asian
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European (Finnish)
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African
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QD
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FS
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InbreedingCoeff
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MQ
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ClippingRankSum
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DP
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MQRankSum
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ReadPosRankSum
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BaseQRankSum
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VQSLOD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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European (Non-Finnish)
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allele num: 25264
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Latino
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African
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European (Finnish)
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South Asian
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East Asian
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VQSLOD
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MQ
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FS
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ClippingRankSum
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QD
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MQRankSum
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ReadPosRankSum
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DP
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BaseQRankSum
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InbreedingCoeff
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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num of homozygotes: 0

South Asian
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European (Finnish)
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allele frequency: 0.0e0
allele num: 1086
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4030
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.844970778222086e-5
allele num: 26008
num of homozygotes: 0

Latino
type: Population
allele count: 5
allele frequency: 1.023751023751024e-3
allele num: 4884
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 336
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 8.23144e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.22e-2

FS
type: SiteQuality
SIO_000300: 1.103e0

MQRankSum
type: SiteQuality
SIO_000300: 2.13e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.52e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.81e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.84e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.16e-1

QD
type: SiteQuality
SIO_000300: 9.1e0

GenotypeDepth
all individuals: 149
bin: 5.25e1
variant carriers: 1

GenotypeDepth
all individuals: 34
bin: 8.75e1
variant carriers: 1

GenotypeDepth
all individuals: 20
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 79
bin: 9.75e1
variant carriers: 1

GenotypeDepth
all individuals: 1445
bin: 1.75e1
variant carriers: 2

GenotypeDepth
all individuals: 210
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 208
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1175
bin: 9.75e1
variant carriers: 26

GenotypeQuality
all individuals: 1178
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 88
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1480
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 353
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 711
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 2

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15967
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 664
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1313
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 338
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 407
bin: 5.75e1
variant carriers: 2

GenotypeQuality
all individuals: 72
bin: 8.75e1
variant carriers: 2

European (Non-Finnish)
type: Population
allele count: 8
allele frequency: 2.858367871945119e-4
allele num: 27988
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5346
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 370
num of homozygotes: 0

South Asian
type: Population
allele count: 16
allele frequency: 1.584472172707467e-3
allele num: 10098
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1228
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4956
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4400
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 8.45059e5

QD
type: SiteQuality
SIO_000300: 1.071e1

VQSLOD
type: SiteQuality
SIO_000300: 1.62e0

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.12e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.122e0

FS
type: SiteQuality
SIO_000300: 1.103e0

MQRankSum
type: SiteQuality
SIO_000300: -1.1e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.98e-1

GenotypeDepth
all individuals: 1604
bin: 1.75e1
variant carriers: 4

GenotypeDepth
all individuals: 147
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 46
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 89
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variant carriers: 1

GenotypeDepth
all individuals: 211
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variant carriers: 0

GenotypeDepth
all individuals: 5387
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variant carriers: 0

GenotypeQuality
all individuals: 169
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3963
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 332
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29285
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 735
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 487
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 554
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variant carriers: 0

GenotypeQuality
all individuals: 520
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1290
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 90
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 831
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16046
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 365
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1156
bin: 9.75e1
variant carriers: 8

GenotypeQuality
all individuals: 1470
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 302
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 993
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1176
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 392
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1292
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 2.434105292440364e-4
allele num: 28758
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.993620414673046e-4
allele num: 5016
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10176
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5516
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4532
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 8.57201e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.14e-2

MQRankSum
type: SiteQuality
SIO_000300: 4.73e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.22e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.03e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 9.77e0

FS
type: SiteQuality
SIO_000300: 4.52e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.7e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.33e-1

GenotypeDepth
all individuals: 78
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 37
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 13844
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 118
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 64
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variant carriers: 0

GenotypeDepth
all individuals: 147
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variant carriers: 0

GenotypeQuality
all individuals: 3931
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 350
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 808
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 272
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variant carriers: 0

GenotypeQuality
all individuals: 167
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1501
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16427
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variant carriers: 0

GenotypeQuality
all individuals: 1163
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 912
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 527
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 29298
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variant carriers: 0

GenotypeQuality
all individuals: 458
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 284
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variant carriers: 0

GenotypeQuality
all individuals: 67
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variant carriers: 0

GenotypeQuality
all individuals: 473
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variant carriers: 0

GenotypeQuality
all individuals: 334
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variant carriers: 1

GenotypeQuality
all individuals: 1156
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variant carriers: 8

GenotypeQuality
all individuals: 88
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variant carriers: 0

GenotypeQuality
all individuals: 1264
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variant carriers: 0

GenotypeQuality
all individuals: 697
bin: 3.75e1
variant carriers: 0

South Asian
type: Population
allele count: 3
allele frequency: 2.932551319648094e-4
allele num: 10230
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5066
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4596
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.77683013503909e-4
allele num: 5628
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 1.712680687812564e-4
allele num: 29194
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1326
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 400
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 8.60147e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.8e-3

MQRankSum
type: SiteQuality
SIO_000300: -4.06e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.28e0

QD
type: SiteQuality
SIO_000300: 1.321e1

FS
type: SiteQuality
SIO_000300: 7.847e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.79e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 9.14e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.35e-1

GenotypeDepth
all individuals: 33
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 78
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 26993
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 147
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 118
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variant carriers: 0

GenotypeDepth
all individuals: 88
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variant carriers: 0

GenotypeQuality
all individuals: 271
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variant carriers: 0

GenotypeQuality
all individuals: 467
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variant carriers: 0

GenotypeQuality
all individuals: 1508
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variant carriers: 0

GenotypeQuality
all individuals: 349
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variant carriers: 0

GenotypeQuality
all individuals: 1106
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variant carriers: 0

GenotypeQuality
all individuals: 801
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variant carriers: 0

GenotypeQuality
all individuals: 631
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variant carriers: 0

GenotypeQuality
all individuals: 637
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variant carriers: 0

GenotypeQuality
all individuals: 241
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variant carriers: 0

GenotypeQuality
all individuals: 87
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GenotypeQuality
all individuals: 1149
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variant carriers: 1

GenotypeQuality
all individuals: 3821
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GenotypeQuality
all individuals: 17363
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GenotypeQuality
all individuals: 1257
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variant carriers: 0

GenotypeQuality
all individuals: 29061
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GenotypeQuality
all individuals: 458
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GenotypeQuality
all individuals: 66
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GenotypeQuality
all individuals: 333
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GenotypeQuality
all individuals: 398
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GenotypeQuality
all individuals: 168
bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 416
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5116
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.311039004039468e-5
allele num: 30202
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4762
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5862
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10328
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1394
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 8.25e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.03e-2

MQRankSum
type: SiteQuality
SIO_000300: 4.65e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.45e0

VQSLOD
type: SiteQuality
SIO_000300: -1.123e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.49e-1

DP
type: SiteQuality
SIO_000300: 8.71106e5

BaseQRankSum
type: SiteQuality
SIO_000300: -1.849e0