4-15995708-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15995708
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 15995708
    reference: chr 4
allele count: 4
allele frequency: 3.31707964308223e-5
allele num: 120588
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000445526
  ensembl transcript: ENST00000543373
  gene symbol: PROM1
  hgvsc: ENST00000543373.1:c.1656-14G>A
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000427346
  ensembl transcript: ENST00000508167
  gene symbol: PROM1
  hgvsc: ENST00000508167.1:c.1656-14G>A
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000443620
  ensembl transcript: ENST00000539194
  gene symbol: PROM1
  hgvsc: ENST00000539194.1:c.1683-14G>A
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000415481
  ensembl transcript: ENST00000447510
  gene symbol: PROM1
  hgvsc: ENST00000447510.2:c.1683-14G>A
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000438045
  ensembl transcript: ENST00000540805
  gene symbol: PROM1
  hgvsc: ENST00000540805.1:c.1683-14G>A
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000426809
  ensembl transcript: ENST00000510224
  gene symbol: PROM1
  hgvsc: ENST00000510224.1:c.1683-14G>A
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000426090
  ensembl transcript: ENST00000505450
  gene symbol: PROM1
  hgvsc: ENST00000505450.1:c.1656-14G>A
  variant of: http://identifiers.org/hgnc/9454
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9603
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7003
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4259
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 950
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1720
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8341
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10059
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3195
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3565
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1299
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5149
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 775
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2502
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 620
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4133
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 189
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2132
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Finnish)
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: BaseQRankSum

4-15995712-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15995712
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 15995712
    reference: chr 4
allele count: 1
allele frequency: 8.29393713195654e-6
allele num: 120570
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000438045
  ensembl transcript: ENST00000540805
  gene symbol: PROM1
  hgvsc: ENST00000540805.1:c.1683-18C>A
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000427346
  ensembl transcript: ENST00000508167
  gene symbol: PROM1
  hgvsc: ENST00000508167.1:c.1656-18C>A
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000426090
  ensembl transcript: ENST00000505450
  gene symbol: PROM1
  hgvsc: ENST00000505450.1:c.1656-18C>A
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000415481
  ensembl transcript: ENST00000447510
  gene symbol: PROM1
  hgvsc: ENST00000447510.2:c.1683-18C>A
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000443620
  ensembl transcript: ENST00000539194
  gene symbol: PROM1
  hgvsc: ENST00000539194.1:c.1683-18C>A
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000445526
  ensembl transcript: ENST00000543373
  gene symbol: PROM1
  hgvsc: ENST00000543373.1:c.1656-18C>A
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000426809
  ensembl transcript: ENST00000510224
  gene symbol: PROM1
  hgvsc: ENST00000510224.1:c.1683-18C>A
  variant of: http://identifiers.org/hgnc/9454
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 620
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5148
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7003
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 775
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4186
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8333
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9564
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2502
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1718
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1298
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3565
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10028
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3195
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 950
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3969
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 249
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
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genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 110
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 28
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genotype quality: GenotypeQuality
  all individuals: 4132
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2131
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

4-15995728-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15995728
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 15995728
    reference: chr 4
allele count: 1
allele frequency: 8.302613662781043e-6
allele num: 120444
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000438045
  ensembl transcript: ENST00000540805
  gene symbol: PROM1
  hgvsc: ENST00000540805.1:c.1683-34T>A
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000426090
  ensembl transcript: ENST00000505450
  gene symbol: PROM1
  hgvsc: ENST00000505450.1:c.1656-34T>A
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000426809
  ensembl transcript: ENST00000510224
  gene symbol: PROM1
  hgvsc: ENST00000510224.1:c.1683-34T>A
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000445526
  ensembl transcript: ENST00000543373
  gene symbol: PROM1
  hgvsc: ENST00000543373.1:c.1656-34T>A
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000415481
  ensembl transcript: ENST00000447510
  gene symbol: PROM1
  hgvsc: ENST00000447510.2:c.1683-34T>A
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000427346
  ensembl transcript: ENST00000508167
  gene symbol: PROM1
  hgvsc: ENST00000508167.1:c.1656-34T>A
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000443620
  ensembl transcript: ENST00000539194
  gene symbol: PROM1
  hgvsc: ENST00000539194.1:c.1683-34T>A
  variant of: http://identifiers.org/hgnc/9454
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6993
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 620
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 824
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1718
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9739
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2500
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 239
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: South Asian
population: Other
population: European (Finnish)
population: East Asian
population: African
reference allele: A
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: QD

http://identifiers.org/exac.variant/4-15995729-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15995729
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 15995729
    reference: chr 4
allele count: 1
allele frequency: 8.30357884248111e-6
allele num: 120430
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000443620
  ensembl transcript: ENST00000539194
  gene symbol: PROM1
  hgvsc: ENST00000539194.1:c.1683-35T>G
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000426090
  ensembl transcript: ENST00000505450
  gene symbol: PROM1
  hgvsc: ENST00000505450.1:c.1656-35T>G
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000445526
  ensembl transcript: ENST00000543373
  gene symbol: PROM1
  hgvsc: ENST00000543373.1:c.1656-35T>G
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000426809
  ensembl transcript: ENST00000510224
  gene symbol: PROM1
  hgvsc: ENST00000510224.1:c.1683-35T>G
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000427346
  ensembl transcript: ENST00000508167
  gene symbol: PROM1
  hgvsc: ENST00000508167.1:c.1656-35T>G
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000438045
  ensembl transcript: ENST00000540805
  gene symbol: PROM1
  hgvsc: ENST00000540805.1:c.1683-35T>G
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000415481
  ensembl transcript: ENST00000447510
  gene symbol: PROM1
  hgvsc: ENST00000447510.2:c.1683-35T>G
  variant of: http://identifiers.org/hgnc/9454
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2500
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3463
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6991
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3565
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 950
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 620
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1299
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3195
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 573
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 601
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 219
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 627
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 328
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2524
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Latino
population: East Asian
population: African
reference allele: A
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD

4-15995731-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15995731
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 15995731
    reference: chr 4
allele count: 1
allele frequency: 8.307165761185599e-6
allele num: 120378
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000415481
  ensembl transcript: ENST00000447510
  gene symbol: PROM1
  hgvsc: ENST00000447510.2:c.1683-37C>A
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000427346
  ensembl transcript: ENST00000508167
  gene symbol: PROM1
  hgvsc: ENST00000508167.1:c.1656-37C>A
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000445526
  ensembl transcript: ENST00000543373
  gene symbol: PROM1
  hgvsc: ENST00000543373.1:c.1656-37C>A
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000443620
  ensembl transcript: ENST00000539194
  gene symbol: PROM1
  hgvsc: ENST00000539194.1:c.1683-37C>A
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000438045
  ensembl transcript: ENST00000540805
  gene symbol: PROM1
  hgvsc: ENST00000540805.1:c.1683-37C>A
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000426809
  ensembl transcript: ENST00000510224
  gene symbol: PROM1
  hgvsc: ENST00000510224.1:c.1683-37C>A
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000426090
  ensembl transcript: ENST00000505450
  gene symbol: PROM1
  hgvsc: ENST00000505450.1:c.1656-37C>A
  variant of: http://identifiers.org/hgnc/9454
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3471
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2174
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3564
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5145
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8411
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 620
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 841
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 775
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2500
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6988
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1299
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9409
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8211
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 950
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1719
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3195
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 571
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2123
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 416
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 462
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 743
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 332
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4090
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2484
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8744
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Latino
population: Other
population: European (Non-Finnish)
population: East Asian
population: African
reference allele: G
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: QD

4-15995738-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15995738
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 15995738
    reference: chr 4
allele count: 2
allele frequency: 1.662980393461161e-5
allele num: 120266
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000438045
  ensembl transcript: ENST00000540805
  gene symbol: PROM1
  hgvsc: ENST00000540805.1:c.1683-44G>A
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000426090
  ensembl transcript: ENST00000505450
  gene symbol: PROM1
  hgvsc: ENST00000505450.1:c.1656-44G>A
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000427346
  ensembl transcript: ENST00000508167
  gene symbol: PROM1
  hgvsc: ENST00000508167.1:c.1656-44G>A
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000443620
  ensembl transcript: ENST00000539194
  gene symbol: PROM1
  hgvsc: ENST00000539194.1:c.1683-44G>A
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000415481
  ensembl transcript: ENST00000447510
  gene symbol: PROM1
  hgvsc: ENST00000447510.2:c.1683-44G>A
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000426809
  ensembl transcript: ENST00000510224
  gene symbol: PROM1
  hgvsc: ENST00000510224.1:c.1683-44G>A
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000445526
  ensembl transcript: ENST00000543373
  gene symbol: PROM1
  hgvsc: ENST00000543373.1:c.1656-44G>A
  variant of: http://identifiers.org/hgnc/9454
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 775
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 949
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1298
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8977
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 620
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2309
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4450
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6981
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7787
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8140
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5141
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3195
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3564
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2501
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1716
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 844
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 827
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4700
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1167
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 594
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 208
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 685
  bin: 4.25e1
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genotype quality: GenotypeQuality
  all individuals: 26190
  bin: 9.75e1
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genotype quality: GenotypeQuality
  all individuals: 31
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7689
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: South Asian
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: ReadPosRankSum

4-15995744-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15995744
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 15995744
    reference: chr 4
allele count: 1
allele frequency: 8.326533331112925e-6
allele num: 120098
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000427346
  ensembl transcript: ENST00000508167
  gene symbol: PROM1
  hgvsc: ENST00000508167.1:c.1656-50G>A
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000426809
  ensembl transcript: ENST00000510224
  gene symbol: PROM1
  hgvsc: ENST00000510224.1:c.1683-50G>A
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000445526
  ensembl transcript: ENST00000543373
  gene symbol: PROM1
  hgvsc: ENST00000543373.1:c.1656-50G>A
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000443620
  ensembl transcript: ENST00000539194
  gene symbol: PROM1
  hgvsc: ENST00000539194.1:c.1683-50G>A
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000438045
  ensembl transcript: ENST00000540805
  gene symbol: PROM1
  hgvsc: ENST00000540805.1:c.1683-50G>A
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000426090
  ensembl transcript: ENST00000505450
  gene symbol: PROM1
  hgvsc: ENST00000505450.1:c.1656-50G>A
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000415481
  ensembl transcript: ENST00000447510
  gene symbol: PROM1
  hgvsc: ENST00000447510.2:c.1683-50G>A
  variant of: http://identifiers.org/hgnc/9454
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 775
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6956
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2499
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 949
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 825
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8453
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3195
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5142
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 415
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3563
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2221
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1140
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 4.75e1
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genotype quality: GenotypeQuality
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  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 490
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Other
population: East Asian
population: African
population: Latino
reference allele: C
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: QD

4-15999959-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15999959
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 15999959
    reference: chr 4
allele count: 1
allele frequency: 2.023390392942414e-5
allele num: 49422
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000443620
  ensembl transcript: ENST00000539194
  gene symbol: PROM1
  hgvsc: ENST00000539194.1:c.1682+49T>C
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000426090
  ensembl transcript: ENST00000505450
  gene symbol: PROM1
  hgvsc: ENST00000505450.1:c.1655+49T>C
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000415481
  ensembl transcript: ENST00000447510
  gene symbol: PROM1
  hgvsc: ENST00000447510.2:c.1682+49T>C
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000438045
  ensembl transcript: ENST00000540805
  gene symbol: PROM1
  hgvsc: ENST00000540805.1:c.1682+49T>C
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000427346
  ensembl transcript: ENST00000508167
  gene symbol: PROM1
  hgvsc: ENST00000508167.1:c.1655+49T>C
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000426809
  ensembl transcript: ENST00000510224
  gene symbol: PROM1
  hgvsc: ENST00000510224.1:c.1682+49T>C
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000445526
  ensembl transcript: ENST00000543373
  gene symbol: PROM1
  hgvsc: ENST00000543373.1:c.1655+49T>C
  variant of: http://identifiers.org/hgnc/9454
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25058
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 962
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.25e1
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genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3018
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 734
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4820
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4721
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 691
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13595
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 938
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 954
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6400
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8763
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: Other
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: QD

http://identifiers.org/exac.variant/4-15999965-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15999965
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 15999965
    reference: chr 4
allele count: 1
allele frequency: 2.012153406575717e-5
allele num: 49698
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000438045
  ensembl transcript: ENST00000540805
  gene symbol: PROM1
  hgvsc: ENST00000540805.1:c.1682+43T>G
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000426809
  ensembl transcript: ENST00000510224
  gene symbol: PROM1
  hgvsc: ENST00000510224.1:c.1682+43T>G
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000445526
  ensembl transcript: ENST00000543373
  gene symbol: PROM1
  hgvsc: ENST00000543373.1:c.1655+43T>G
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000427346
  ensembl transcript: ENST00000508167
  gene symbol: PROM1
  hgvsc: ENST00000508167.1:c.1655+43T>G
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000426090
  ensembl transcript: ENST00000505450
  gene symbol: PROM1
  hgvsc: ENST00000505450.1:c.1655+43T>G
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000443620
  ensembl transcript: ENST00000539194
  gene symbol: PROM1
  hgvsc: ENST00000539194.1:c.1682+43T>G
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000415481
  ensembl transcript: ENST00000447510
  gene symbol: PROM1
  hgvsc: ENST00000447510.2:c.1682+43T>G
  variant of: http://identifiers.org/hgnc/9454
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1522
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2655
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9554
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1612
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1859
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10491
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 963
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2560
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25465
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5041
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3993
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1869
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17889
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 668
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 683
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 715
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 794
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 772
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
population: East Asian
population: European (Finnish)
population: Latino
reference allele: A
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD

4-15999969-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15999969
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 15999969
    reference: chr 4
allele count: 0
allele frequency: 0.0e0
allele num: 50146
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000426090
  ensembl transcript: ENST00000505450
  gene symbol: PROM1
  hgvsc: ENST00000505450.1:c.1655+39G>A
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000427346
  ensembl transcript: ENST00000508167
  gene symbol: PROM1
  hgvsc: ENST00000508167.1:c.1655+39G>A
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000445526
  ensembl transcript: ENST00000543373
  gene symbol: PROM1
  hgvsc: ENST00000543373.1:c.1655+39G>A
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000443620
  ensembl transcript: ENST00000539194
  gene symbol: PROM1
  hgvsc: ENST00000539194.1:c.1682+39G>A
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000426809
  ensembl transcript: ENST00000510224
  gene symbol: PROM1
  hgvsc: ENST00000510224.1:c.1682+39G>A
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000438045
  ensembl transcript: ENST00000540805
  gene symbol: PROM1
  hgvsc: ENST00000540805.1:c.1682+39G>A
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000415481
  ensembl transcript: ENST00000447510
  gene symbol: PROM1
  hgvsc: ENST00000447510.2:c.1682+39G>A
  variant of: http://identifiers.org/hgnc/9454
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 2663
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1518
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2594
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 962
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8889
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2006
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25910
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10560
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1617
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 644
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 650
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6556
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4027
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 277
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1871
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5157
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 645
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19922
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3017
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3656
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: Other
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: FS

4-15999971-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15999971
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 15999971
    reference: chr 4
allele count: 1
allele frequency: 1.977691638319753e-5
allele num: 50564
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000426090
  ensembl transcript: ENST00000505450
  gene symbol: PROM1
  hgvsc: ENST00000505450.1:c.1655+37A>G
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000443620
  ensembl transcript: ENST00000539194
  gene symbol: PROM1
  hgvsc: ENST00000539194.1:c.1682+37A>G
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000438045
  ensembl transcript: ENST00000540805
  gene symbol: PROM1
  hgvsc: ENST00000540805.1:c.1682+37A>G
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000427346
  ensembl transcript: ENST00000508167
  gene symbol: PROM1
  hgvsc: ENST00000508167.1:c.1655+37A>G
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000426809
  ensembl transcript: ENST00000510224
  gene symbol: PROM1
  hgvsc: ENST00000510224.1:c.1682+37A>G
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000445526
  ensembl transcript: ENST00000543373
  gene symbol: PROM1
  hgvsc: ENST00000543373.1:c.1655+37A>G
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000415481
  ensembl transcript: ENST00000447510
  gene symbol: PROM1
  hgvsc: ENST00000447510.2:c.1682+37A>G
  variant of: http://identifiers.org/hgnc/9454
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1516
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1469
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2605
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2664
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10527
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2260
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8410
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26320
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 550
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 963
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 434
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 563
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 935
  bin: 7.75e1
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genotype quality: GenotypeQuality
  all individuals: 2331
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1886
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21050
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 3154
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4066
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Other
population: European (Finnish)
population: African
population: Latino
reference allele: T
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: QD

4-15999978-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15999978
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 15999978
    reference: chr 4
allele count: 2
allele frequency: 3.882138281765597e-5
allele num: 51518
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000426090
  ensembl transcript: ENST00000505450
  gene symbol: PROM1
  hgvsc: ENST00000505450.1:c.1655+30A>G
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000426809
  ensembl transcript: ENST00000510224
  gene symbol: PROM1
  hgvsc: ENST00000510224.1:c.1682+30A>G
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000415481
  ensembl transcript: ENST00000447510
  gene symbol: PROM1
  hgvsc: ENST00000447510.2:c.1682+30A>G
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000438045
  ensembl transcript: ENST00000540805
  gene symbol: PROM1
  hgvsc: ENST00000540805.1:c.1682+30A>G
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000427346
  ensembl transcript: ENST00000508167
  gene symbol: PROM1
  hgvsc: ENST00000508167.1:c.1655+30A>G
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000443620
  ensembl transcript: ENST00000539194
  gene symbol: PROM1
  hgvsc: ENST00000539194.1:c.1682+30A>G
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000445526
  ensembl transcript: ENST00000543373
  gene symbol: PROM1
  hgvsc: ENST00000543373.1:c.1655+30A>G
  variant of: http://identifiers.org/hgnc/9454
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 27988
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3497
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1121
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10146
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6234
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2673
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 963
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2672
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1519
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 363
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24344
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2074
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2043
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 131
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4053
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 671
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5183
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1949
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 405
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: East Asian
population: Latino
population: South Asian
population: African
reference allele: T
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ

http://identifiers.org/exac.variant/4-15999981-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15999981
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 15999981
    reference: chr 4
allele count: 1
allele frequency: 1.919164779487967e-5
allele num: 52106
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000438045
  ensembl transcript: ENST00000540805
  gene symbol: PROM1
  hgvsc: ENST00000540805.1:c.1682+27G>T
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000427346
  ensembl transcript: ENST00000508167
  gene symbol: PROM1
  hgvsc: ENST00000508167.1:c.1655+27G>T
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000443620
  ensembl transcript: ENST00000539194
  gene symbol: PROM1
  hgvsc: ENST00000539194.1:c.1682+27G>T
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000426090
  ensembl transcript: ENST00000505450
  gene symbol: PROM1
  hgvsc: ENST00000505450.1:c.1655+27G>T
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000415481
  ensembl transcript: ENST00000447510
  gene symbol: PROM1
  hgvsc: ENST00000447510.2:c.1682+27G>T
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000426809
  ensembl transcript: ENST00000510224
  gene symbol: PROM1
  hgvsc: ENST00000510224.1:c.1682+27G>T
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000445526
  ensembl transcript: ENST00000543373
  gene symbol: PROM1
  hgvsc: ENST00000543373.1:c.1655+27G>T
  variant of: http://identifiers.org/hgnc/9454
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9920
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2679
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2742
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1093
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28461
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 644
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4240
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 963
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5222
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1520
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 931
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 404
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 564
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 442
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 150
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3977
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3018
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 684
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1552
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: East Asian
population: African
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum

4-15999982-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15999982
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 15999982
    reference: chr 4
allele count: 0
allele frequency: 0.0e0
allele num: 52824
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000415481
  ensembl transcript: ENST00000447510
  gene symbol: PROM1
  hgvsc: ENST00000447510.2:c.1682+26C>T
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000443620
  ensembl transcript: ENST00000539194
  gene symbol: PROM1
  hgvsc: ENST00000539194.1:c.1682+26C>T
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000426809
  ensembl transcript: ENST00000510224
  gene symbol: PROM1
  hgvsc: ENST00000510224.1:c.1682+26C>T
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000438045
  ensembl transcript: ENST00000540805
  gene symbol: PROM1
  hgvsc: ENST00000540805.1:c.1682+26C>T
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000427346
  ensembl transcript: ENST00000508167
  gene symbol: PROM1
  hgvsc: ENST00000508167.1:c.1655+26C>T
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000445526
  ensembl transcript: ENST00000543373
  gene symbol: PROM1
  hgvsc: ENST00000543373.1:c.1655+26C>T
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000426090
  ensembl transcript: ENST00000505450
  gene symbol: PROM1
  hgvsc: ENST00000505450.1:c.1655+26C>T
  variant of: http://identifiers.org/hgnc/9454
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 2694
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28668
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 963
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4783
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1134
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2788
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9698
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1519
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4608
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1927
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3912
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1133
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 604
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1276
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 422
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4115
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 932
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26304
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: Other
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: FS
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff

4-15999988-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15999988
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 15999988
    reference: chr 4
allele count: 2
allele frequency: 3.557579422960618e-5
allele num: 56218
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000443620
  ensembl transcript: ENST00000539194
  gene symbol: PROM1
  hgvsc: ENST00000539194.1:c.1682+20A>G
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000438045
  ensembl transcript: ENST00000540805
  gene symbol: PROM1
  hgvsc: ENST00000540805.1:c.1682+20A>G
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000415481
  ensembl transcript: ENST00000447510
  gene symbol: PROM1
  hgvsc: ENST00000447510.2:c.1682+20A>G
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000426090
  ensembl transcript: ENST00000505450
  gene symbol: PROM1
  hgvsc: ENST00000505450.1:c.1655+20A>G
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000426809
  ensembl transcript: ENST00000510224
  gene symbol: PROM1
  hgvsc: ENST00000510224.1:c.1682+20A>G
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000427346
  ensembl transcript: ENST00000508167
  gene symbol: PROM1
  hgvsc: ENST00000508167.1:c.1655+20A>G
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000445526
  ensembl transcript: ENST00000543373
  gene symbol: PROM1
  hgvsc: ENST00000543373.1:c.1655+20A>G
  variant of: http://identifiers.org/hgnc/9454
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6920
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2698
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28768
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8848
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2909
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 963
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3152
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1111
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1519
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1578
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3669
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 194
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 938
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 404
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 783
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9875
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2941
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 325
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3962
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
reference allele: T
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP

4-15999994-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15999994
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 15999994
    reference: chr 4
allele count: 1
allele frequency: 1.689360408149475e-5
allele num: 59194
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000445526
  ensembl transcript: ENST00000543373
  gene symbol: PROM1
  hgvsc: ENST00000543373.1:c.1655+14C>G
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000438045
  ensembl transcript: ENST00000540805
  gene symbol: PROM1
  hgvsc: ENST00000540805.1:c.1682+14C>G
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000415481
  ensembl transcript: ENST00000447510
  gene symbol: PROM1
  hgvsc: ENST00000447510.2:c.1682+14C>G
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000443620
  ensembl transcript: ENST00000539194
  gene symbol: PROM1
  hgvsc: ENST00000539194.1:c.1682+14C>G
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000426809
  ensembl transcript: ENST00000510224
  gene symbol: PROM1
  hgvsc: ENST00000510224.1:c.1682+14C>G
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000427346
  ensembl transcript: ENST00000508167
  gene symbol: PROM1
  hgvsc: ENST00000508167.1:c.1655+14C>G
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000426090
  ensembl transcript: ENST00000505450
  gene symbol: PROM1
  hgvsc: ENST00000505450.1:c.1655+14C>G
  variant of: http://identifiers.org/hgnc/9454
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7987
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 963
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28127
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2711
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9164
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2149
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1188
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1518
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3096
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3017
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1413
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2119
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12143
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 675
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 372
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3382
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 701
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 350
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 278
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: South Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
reference allele: G
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: DP

4-16000004-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16000004
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 16000004
    reference: chr 4
allele count: 1
allele frequency: 1.482887478498132e-5
allele num: 67436
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000426809
  ensembl transcript: ENST00000510224
  gene symbol: PROM1
  hgvsc: ENST00000510224.1:c.1682+4T>A
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000445526
  ensembl transcript: ENST00000543373
  gene symbol: PROM1
  hgvsc: ENST00000543373.1:c.1655+4T>A
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000415481
  ensembl transcript: ENST00000447510
  gene symbol: PROM1
  hgvsc: ENST00000447510.2:c.1682+4T>A
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000438045
  ensembl transcript: ENST00000540805
  gene symbol: PROM1
  hgvsc: ENST00000540805.1:c.1682+4T>A
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000443620
  ensembl transcript: ENST00000539194
  gene symbol: PROM1
  hgvsc: ENST00000539194.1:c.1682+4T>A
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000426090
  ensembl transcript: ENST00000505450
  gene symbol: PROM1
  hgvsc: ENST00000505450.1:c.1655+4T>A
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000427346
  ensembl transcript: ENST00000508167
  gene symbol: PROM1
  hgvsc: ENST00000508167.1:c.1655+4T>A
  variant of: http://identifiers.org/hgnc/9454
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3480
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2739
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1170
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14199
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6370
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25157
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1325
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 963
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1518
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1188
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 722
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 405
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 173
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 947
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 471
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24582
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3017
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2703
  bin: 2.75e1
  variant carriers: 0
hgvs: c.1682+4T>A
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: African
population: Other
population: East Asian
population: South Asian
reference allele: A
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: QD

4-16000027-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16000027
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 16000027
    reference: chr 4
allele count: 1
allele frequency: 1.111975981318804e-5
allele num: 89930
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000438045
  ensembl transcript: ENST00000540805
  gene symbol: PROM1
  hgvsc: ENST00000540805.1:c.1663A>T
  hgvsp: ENSP00000438045.1:p.Thr555Ser
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000427346
  ensembl transcript: ENST00000508167
  gene symbol: PROM1
  hgvsc: ENST00000508167.1:c.1636A>T
  hgvsp: ENSP00000427346.1:p.Thr546Ser
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000426090
  ensembl transcript: ENST00000505450
  gene symbol: PROM1
  hgvsc: ENST00000505450.1:c.1636A>T
  hgvsp: ENSP00000426090.1:p.Thr546Ser
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000426809
  ensembl transcript: ENST00000510224
  gene symbol: PROM1
  hgvsc: ENST00000510224.1:c.1663A>T
  hgvsp: ENSP00000426809.1:p.Thr555Ser
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000415481
  ensembl transcript: ENST00000447510
  gene symbol: PROM1
  hgvsc: ENST00000447510.2:c.1663A>T
  hgvsp: ENSP00000415481.2:p.Thr555Ser
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000443620
  ensembl transcript: ENST00000539194
  gene symbol: PROM1
  hgvsc: ENST00000539194.1:c.1663A>T
  hgvsp: ENSP00000443620.1:p.Thr555Ser
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000445526
  ensembl transcript: ENST00000543373
  gene symbol: PROM1
  hgvsc: ENST00000543373.1:c.1636A>T
  hgvsp: ENSP00000445526.1:p.Thr546Ser
  variant of: http://identifiers.org/hgnc/9454
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4974
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3418
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1522
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14933
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26478
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2868
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1464
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 964
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15252
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1035
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 234
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29241
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 670
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1280
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 995
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2666
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 335
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Thr555Ser
num of homozygotes: 0
population: European (Finnish)
population: Other
population: South Asian
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
reference allele: T
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP

4-16000027-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16000027
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 16000027
    reference: chr 4
allele count: 1
allele frequency: 1.111975981318804e-5
allele num: 89930
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000427346
  ensembl transcript: ENST00000508167
  gene symbol: PROM1
  hgvsc: ENST00000508167.1:c.1636A>C
  hgvsp: ENSP00000427346.1:p.Thr546Pro
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000438045
  ensembl transcript: ENST00000540805
  gene symbol: PROM1
  hgvsc: ENST00000540805.1:c.1663A>C
  hgvsp: ENSP00000438045.1:p.Thr555Pro
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000426090
  ensembl transcript: ENST00000505450
  gene symbol: PROM1
  hgvsc: ENST00000505450.1:c.1636A>C
  hgvsp: ENSP00000426090.1:p.Thr546Pro
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000443620
  ensembl transcript: ENST00000539194
  gene symbol: PROM1
  hgvsc: ENST00000539194.1:c.1663A>C
  hgvsp: ENSP00000443620.1:p.Thr555Pro
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000445526
  ensembl transcript: ENST00000543373
  gene symbol: PROM1
  hgvsc: ENST00000543373.1:c.1636A>C
  hgvsp: ENSP00000445526.1:p.Thr546Pro
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000426809
  ensembl transcript: ENST00000510224
  gene symbol: PROM1
  hgvsc: ENST00000510224.1:c.1663A>C
  hgvsp: ENSP00000426809.1:p.Thr555Pro
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000415481
  ensembl transcript: ENST00000447510
  gene symbol: PROM1
  hgvsc: ENST00000447510.2:c.1663A>C
  hgvsp: ENSP00000415481.2:p.Thr555Pro
  variant of: http://identifiers.org/hgnc/9454
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14933
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1464
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26478
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1522
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4974
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2868
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3418
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 964
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 335
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1035
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 234
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29241
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 885
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 790
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1280
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 750
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Thr555Pro
num of homozygotes: 0
population: East Asian
population: African
population: Other
population: South Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: T
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: MQ

4-16000039-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16000039
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 16000039
    reference: chr 4
allele count: 6
allele frequency: 6.178433149353324e-5
allele num: 97112
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000443620
  ensembl transcript: ENST00000539194
  gene symbol: PROM1
  hgvsc: ENST00000539194.1:c.1651A>G
  hgvsp: ENSP00000443620.1:p.Lys551Glu
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000438045
  ensembl transcript: ENST00000540805
  gene symbol: PROM1
  hgvsc: ENST00000540805.1:c.1651A>G
  hgvsp: ENSP00000438045.1:p.Lys551Glu
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000445526
  ensembl transcript: ENST00000543373
  gene symbol: PROM1
  hgvsc: ENST00000543373.1:c.1624A>G
  hgvsp: ENSP00000445526.1:p.Lys542Glu
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000426809
  ensembl transcript: ENST00000510224
  gene symbol: PROM1
  hgvsc: ENST00000510224.1:c.1651A>G
  hgvsp: ENSP00000426809.1:p.Lys551Glu
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000415481
  ensembl transcript: ENST00000447510
  gene symbol: PROM1
  hgvsc: ENST00000447510.2:c.1651A>G
  hgvsp: ENSP00000415481.2:p.Lys551Glu
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000426090
  ensembl transcript: ENST00000505450
  gene symbol: PROM1
  hgvsc: ENST00000505450.1:c.1624A>G
  hgvsp: ENSP00000426090.1:p.Lys542Glu
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000427346
  ensembl transcript: ENST00000508167
  gene symbol: PROM1
  hgvsc: ENST00000508167.1:c.1624A>G
  hgvsp: ENSP00000427346.1:p.Lys542Glu
  variant of: http://identifiers.org/hgnc/9454
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2901
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11531
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1520
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30192
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1277
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2588
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 963
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5747
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 233
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3019
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 943
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 406
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 600
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 281
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Lys551Glu
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: Other
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: T
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD

4-16000045-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16000045
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 16000045
    reference: chr 4
allele count: 1
allele frequency: 9.965122072745391e-6
allele num: 100350
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000443620
  ensembl transcript: ENST00000539194
  gene symbol: PROM1
  hgvsc: ENST00000539194.1:c.1645A>T
  hgvsp: ENSP00000443620.1:p.Lys549Ter
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000445526
  ensembl transcript: ENST00000543373
  gene symbol: PROM1
  hgvsc: ENST00000543373.1:c.1618A>T
  hgvsp: ENSP00000445526.1:p.Lys540Ter
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000426090
  ensembl transcript: ENST00000505450
  gene symbol: PROM1
  hgvsc: ENST00000505450.1:c.1618A>T
  hgvsp: ENSP00000426090.1:p.Lys540Ter
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000426809
  ensembl transcript: ENST00000510224
  gene symbol: PROM1
  hgvsc: ENST00000510224.1:c.1645A>T
  hgvsp: ENSP00000426809.1:p.Lys549Ter
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000427346
  ensembl transcript: ENST00000508167
  gene symbol: PROM1
  hgvsc: ENST00000508167.1:c.1618A>T
  hgvsp: ENSP00000427346.1:p.Lys540Ter
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000415481
  ensembl transcript: ENST00000447510
  gene symbol: PROM1
  hgvsc: ENST00000447510.2:c.1645A>T
  hgvsp: ENSP00000415481.2:p.Lys549Ter
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000438045
  ensembl transcript: ENST00000540805
  gene symbol: PROM1
  hgvsc: ENST00000540805.1:c.1645A>T
  hgvsp: ENSP00000438045.1:p.Lys549Ter
  variant of: http://identifiers.org/hgnc/9454
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6125
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2194
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9979
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1524
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 963
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31921
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1112
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2940
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 808
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 716
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 694
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 408
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 284
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 185
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Lys549Ter
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Latino
population: African
population: Other
reference allele: T
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD

4-16000045-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16000045
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 16000045
    reference: chr 4
allele count: 1
allele frequency: 9.965122072745391e-6
allele num: 100350
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000427346
  ensembl transcript: ENST00000508167
  gene symbol: PROM1
  hgvsc: ENST00000508167.1:c.1618A>G
  hgvsp: ENSP00000427346.1:p.Lys540Glu
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000426809
  ensembl transcript: ENST00000510224
  gene symbol: PROM1
  hgvsc: ENST00000510224.1:c.1645A>G
  hgvsp: ENSP00000426809.1:p.Lys549Glu
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000445526
  ensembl transcript: ENST00000543373
  gene symbol: PROM1
  hgvsc: ENST00000543373.1:c.1618A>G
  hgvsp: ENSP00000445526.1:p.Lys540Glu
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000415481
  ensembl transcript: ENST00000447510
  gene symbol: PROM1
  hgvsc: ENST00000447510.2:c.1645A>G
  hgvsp: ENSP00000415481.2:p.Lys549Glu
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000438045
  ensembl transcript: ENST00000540805
  gene symbol: PROM1
  hgvsc: ENST00000540805.1:c.1645A>G
  hgvsp: ENSP00000438045.1:p.Lys549Glu
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000443620
  ensembl transcript: ENST00000539194
  gene symbol: PROM1
  hgvsc: ENST00000539194.1:c.1645A>G
  hgvsp: ENSP00000443620.1:p.Lys549Glu
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000426090
  ensembl transcript: ENST00000505450
  gene symbol: PROM1
  hgvsc: ENST00000505450.1:c.1618A>G
  hgvsp: ENSP00000426090.1:p.Lys540Glu
  variant of: http://identifiers.org/hgnc/9454
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2194
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1524
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 963
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9979
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6125
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1112
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31921
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2940
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 808
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 456
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 694
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10557
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3017
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 724
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 185
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 466
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 851
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Lys549Glu
num of homozygotes: 0
population: Other
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: T
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP

4-16000046-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16000046
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 16000046
    reference: chr 4
allele count: 1
allele frequency: 9.916109711837852e-6
allele num: 100846
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000426809
  ensembl transcript: ENST00000510224
  gene symbol: PROM1
  hgvsc: ENST00000510224.1:c.1644T>C
  hgvsp: ENST00000510224.1:c.1644T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000443620
  ensembl transcript: ENST00000539194
  gene symbol: PROM1
  hgvsc: ENST00000539194.1:c.1644T>C
  hgvsp: ENST00000539194.1:c.1644T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000438045
  ensembl transcript: ENST00000540805
  gene symbol: PROM1
  hgvsc: ENST00000540805.1:c.1644T>C
  hgvsp: ENST00000540805.1:c.1644T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000426090
  ensembl transcript: ENST00000505450
  gene symbol: PROM1
  hgvsc: ENST00000505450.1:c.1617T>C
  hgvsp: ENST00000505450.1:c.1617T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000427346
  ensembl transcript: ENST00000508167
  gene symbol: PROM1
  hgvsc: ENST00000508167.1:c.1617T>C
  hgvsp: ENST00000508167.1:c.1617T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000445526
  ensembl transcript: ENST00000543373
  gene symbol: PROM1
  hgvsc: ENST00000543373.1:c.1617T>C
  hgvsp: ENST00000543373.1:c.1617T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000415481
  ensembl transcript: ENST00000447510
  gene symbol: PROM1
  hgvsc: ENST00000447510.2:c.1644T>C
  hgvsp: ENST00000447510.2:c.1644T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9454
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1082
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32201
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2119
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9733
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 963
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1528
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6179
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2956
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 683
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 692
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3017
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 565
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 473
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36557
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 183
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Asn548Asn
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Other
population: South Asian
population: Latino
population: African
population: European (Finnish)
reference allele: A
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: MQ

4-16000052-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16000052
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 16000052
    reference: chr 4
allele count: 1
allele frequency: 9.689171382063406e-6
allele num: 103208
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000426090
  ensembl transcript: ENST00000505450
  gene symbol: PROM1
  hgvsc: ENST00000505450.1:c.1611A>G
  hgvsp: ENST00000505450.1:c.1611A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000426809
  ensembl transcript: ENST00000510224
  gene symbol: PROM1
  hgvsc: ENST00000510224.1:c.1638A>G
  hgvsp: ENST00000510224.1:c.1638A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000415481
  ensembl transcript: ENST00000447510
  gene symbol: PROM1
  hgvsc: ENST00000447510.2:c.1638A>G
  hgvsp: ENST00000447510.2:c.1638A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000445526
  ensembl transcript: ENST00000543373
  gene symbol: PROM1
  hgvsc: ENST00000543373.1:c.1611A>G
  hgvsp: ENST00000543373.1:c.1611A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000443620
  ensembl transcript: ENST00000539194
  gene symbol: PROM1
  hgvsc: ENST00000539194.1:c.1638A>G
  hgvsp: ENST00000539194.1:c.1638A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000427346
  ensembl transcript: ENST00000508167
  gene symbol: PROM1
  hgvsc: ENST00000508167.1:c.1611A>G
  hgvsp: ENST00000508167.1:c.1611A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000438045
  ensembl transcript: ENST00000540805
  gene symbol: PROM1
  hgvsc: ENST00000540805.1:c.1638A>G
  hgvsp: ENST00000540805.1:c.1638A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9454
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8563
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1854
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2975
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33387
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1524
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 963
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6492
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1016
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 857
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 899
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 408
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 509
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 194
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 565
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38007
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 166
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Leu546Leu
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Other
population: African
reference allele: T
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/4-16000058-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16000058
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 16000058
    reference: chr 4
allele count: 6
allele frequency: 5.724644594981395e-5
allele num: 104810
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000415481
  ensembl transcript: ENST00000447510
  gene symbol: PROM1
  hgvsc: ENST00000447510.2:c.1632G>T
  hgvsp: ENST00000447510.2:c.1632G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000445526
  ensembl transcript: ENST00000543373
  gene symbol: PROM1
  hgvsc: ENST00000543373.1:c.1605G>T
  hgvsp: ENST00000543373.1:c.1605G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000438045
  ensembl transcript: ENST00000540805
  gene symbol: PROM1
  hgvsc: ENST00000540805.1:c.1632G>T
  hgvsp: ENST00000540805.1:c.1632G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000443620
  ensembl transcript: ENST00000539194
  gene symbol: PROM1
  hgvsc: ENST00000539194.1:c.1632G>T
  hgvsp: ENST00000539194.1:c.1632G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000427346
  ensembl transcript: ENST00000508167
  gene symbol: PROM1
  hgvsc: ENST00000508167.1:c.1605G>T
  hgvsp: ENST00000508167.1:c.1605G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000426809
  ensembl transcript: ENST00000510224
  gene symbol: PROM1
  hgvsc: ENST00000510224.1:c.1632G>T
  hgvsp: ENST00000510224.1:c.1632G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000426090
  ensembl transcript: ENST00000505450
  gene symbol: PROM1
  hgvsc: ENST00000505450.1:c.1605G>T
  hgvsp: ENST00000505450.1:c.1605G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9454
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1529
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1697
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 902
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 966
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7771
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3026
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6757
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34147
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 451
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 406
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 154
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8529
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 181
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3019
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 448
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Gly544Gly
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: South Asian
population: African
population: Latino
population: East Asian
reference allele: C
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP

4-16000068-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16000068
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 16000068
    reference: chr 4
allele count: 2
allele frequency: 1.882778227552577e-5
allele num: 106226
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000438045
  ensembl transcript: ENST00000540805
  gene symbol: PROM1
  hgvsc: ENST00000540805.1:c.1622A>G
  hgvsp: ENSP00000438045.1:p.Tyr541Cys
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000415481
  ensembl transcript: ENST00000447510
  gene symbol: PROM1
  hgvsc: ENST00000447510.2:c.1622A>G
  hgvsp: ENSP00000415481.2:p.Tyr541Cys
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000427346
  ensembl transcript: ENST00000508167
  gene symbol: PROM1
  hgvsc: ENST00000508167.1:c.1595A>G
  hgvsp: ENSP00000427346.1:p.Tyr532Cys
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000426809
  ensembl transcript: ENST00000510224
  gene symbol: PROM1
  hgvsc: ENST00000510224.1:c.1622A>G
  hgvsp: ENSP00000426809.1:p.Tyr541Cys
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000426090
  ensembl transcript: ENST00000505450
  gene symbol: PROM1
  hgvsc: ENST00000505450.1:c.1595A>G
  hgvsp: ENSP00000426090.1:p.Tyr532Cys
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000443620
  ensembl transcript: ENST00000539194
  gene symbol: PROM1
  hgvsc: ENST00000539194.1:c.1622A>G
  hgvsp: ENSP00000443620.1:p.Tyr541Cys
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000445526
  ensembl transcript: ENST00000543373
  gene symbol: PROM1
  hgvsc: ENST00000543373.1:c.1595A>G
  hgvsp: ENSP00000445526.1:p.Tyr532Cys
  variant of: http://identifiers.org/hgnc/9454
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1527
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1831
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7096
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7095
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34396
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 963
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3034
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 860
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 349
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 388
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 257
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1070
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3167
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 678
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 407
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 874
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Tyr541Cys
num of homozygotes: 0
population: Latino
population: African
population: Other
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: T
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum

4-16000068-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16000068
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 16000068
    reference: chr 4
allele count: 1
allele frequency: 9.413891137762884e-6
allele num: 106226
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000426809
  ensembl transcript: ENST00000510224
  gene symbol: PROM1
  hgvsc: ENST00000510224.1:c.1622A>C
  hgvsp: ENSP00000426809.1:p.Tyr541Ser
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000415481
  ensembl transcript: ENST00000447510
  gene symbol: PROM1
  hgvsc: ENST00000447510.2:c.1622A>C
  hgvsp: ENSP00000415481.2:p.Tyr541Ser
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000445526
  ensembl transcript: ENST00000543373
  gene symbol: PROM1
  hgvsc: ENST00000543373.1:c.1595A>C
  hgvsp: ENSP00000445526.1:p.Tyr532Ser
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000443620
  ensembl transcript: ENST00000539194
  gene symbol: PROM1
  hgvsc: ENST00000539194.1:c.1622A>C
  hgvsp: ENSP00000443620.1:p.Tyr541Ser
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000438045
  ensembl transcript: ENST00000540805
  gene symbol: PROM1
  hgvsc: ENST00000540805.1:c.1622A>C
  hgvsp: ENSP00000438045.1:p.Tyr541Ser
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000426090
  ensembl transcript: ENST00000505450
  gene symbol: PROM1
  hgvsc: ENST00000505450.1:c.1595A>C
  hgvsp: ENSP00000426090.1:p.Tyr532Ser
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000427346
  ensembl transcript: ENST00000508167
  gene symbol: PROM1
  hgvsc: ENST00000508167.1:c.1595A>C
  hgvsp: ENSP00000427346.1:p.Tyr532Ser
  variant of: http://identifiers.org/hgnc/9454
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1831
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 860
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7096
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 963
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3034
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1527
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7095
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34396
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 141
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 355
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 407
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3017
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 678
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Tyr541Ser
num of homozygotes: 0
population: European (Finnish)
population: African
population: Other
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: T
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: QD

4-16000075-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16000075
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 16000075
    reference: chr 4
allele count: 2
allele frequency: 1.886863655232273e-5
allele num: 105996
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000426090
  ensembl transcript: ENST00000505450
  gene symbol: PROM1
  hgvsc: ENST00000505450.1:c.1588G>A
  hgvsp: ENSP00000426090.1:p.Glu530Lys
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000443620
  ensembl transcript: ENST00000539194
  gene symbol: PROM1
  hgvsc: ENST00000539194.1:c.1615G>A
  hgvsp: ENSP00000443620.1:p.Glu539Lys
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000438045
  ensembl transcript: ENST00000540805
  gene symbol: PROM1
  hgvsc: ENST00000540805.1:c.1615G>A
  hgvsp: ENSP00000438045.1:p.Glu539Lys
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000426809
  ensembl transcript: ENST00000510224
  gene symbol: PROM1
  hgvsc: ENST00000510224.1:c.1615G>A
  hgvsp: ENSP00000426809.1:p.Glu539Lys
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000445526
  ensembl transcript: ENST00000543373
  gene symbol: PROM1
  hgvsc: ENST00000543373.1:c.1588G>A
  hgvsp: ENSP00000445526.1:p.Glu530Lys
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000415481
  ensembl transcript: ENST00000447510
  gene symbol: PROM1
  hgvsc: ENST00000447510.2:c.1615G>A
  hgvsp: ENSP00000415481.2:p.Glu539Lys
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000427346
  ensembl transcript: ENST00000508167
  gene symbol: PROM1
  hgvsc: ENST00000508167.1:c.1588G>A
  hgvsp: ENSP00000427346.1:p.Glu530Lys
  variant of: http://identifiers.org/hgnc/9454
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7302
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2332
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3080
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33418
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7172
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 992
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 965
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1533
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 177
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8848
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 429
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 286
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 409
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 150
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Glu539Lys
num of homozygotes: 1
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
population: South Asian
reference allele: C
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: MQ

4-16000080-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16000080
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 16000080
    reference: chr 4
allele count: 26
allele frequency: 2.465389721221316e-4
allele num: 105460
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000426090
  ensembl transcript: ENST00000505450
  gene symbol: PROM1
  hgvsc: ENST00000505450.1:c.1583A>G
  hgvsp: ENSP00000426090.1:p.Asp528Gly
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000438045
  ensembl transcript: ENST00000540805
  gene symbol: PROM1
  hgvsc: ENST00000540805.1:c.1610A>G
  hgvsp: ENSP00000438045.1:p.Asp537Gly
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000426809
  ensembl transcript: ENST00000510224
  gene symbol: PROM1
  hgvsc: ENST00000510224.1:c.1610A>G
  hgvsp: ENSP00000426809.1:p.Asp537Gly
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000427346
  ensembl transcript: ENST00000508167
  gene symbol: PROM1
  hgvsc: ENST00000508167.1:c.1583A>G
  hgvsp: ENSP00000427346.1:p.Asp528Gly
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000415481
  ensembl transcript: ENST00000447510
  gene symbol: PROM1
  hgvsc: ENST00000447510.2:c.1610A>G
  hgvsp: ENSP00000415481.2:p.Asp537Gly
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000443620
  ensembl transcript: ENST00000539194
  gene symbol: PROM1
  hgvsc: ENST00000539194.1:c.1610A>G
  hgvsp: ENSP00000443620.1:p.Asp537Gly
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000445526
  ensembl transcript: ENST00000543373
  gene symbol: PROM1
  hgvsc: ENST00000543373.1:c.1583A>G
  hgvsp: ENSP00000445526.1:p.Asp528Gly
  variant of: http://identifiers.org/hgnc/9454
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7451
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3050
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2907
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 7364
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 964
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1108
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 32413
  bin: 2.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1527
  bin: 3.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 166
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 432
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 814
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 476
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37946
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 457
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9646
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Asp537Gly
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
population: Other
reference allele: T
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum

4-16000095-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16000095
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 16000095
    reference: chr 4
allele count: 1
allele frequency: 9.751530990365488e-6
allele num: 102548
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000445526
  ensembl transcript: ENST00000543373
  gene symbol: PROM1
  hgvsc: ENST00000543373.1:c.1568A>G
  hgvsp: ENSP00000445526.1:p.Tyr523Cys
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000415481
  ensembl transcript: ENST00000447510
  gene symbol: PROM1
  hgvsc: ENST00000447510.2:c.1595A>G
  hgvsp: ENSP00000415481.2:p.Tyr532Cys
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000438045
  ensembl transcript: ENST00000540805
  gene symbol: PROM1
  hgvsc: ENST00000540805.1:c.1595A>G
  hgvsp: ENSP00000438045.1:p.Tyr532Cys
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000426090
  ensembl transcript: ENST00000505450
  gene symbol: PROM1
  hgvsc: ENST00000505450.1:c.1568A>G
  hgvsp: ENSP00000426090.1:p.Tyr523Cys
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000426809
  ensembl transcript: ENST00000510224
  gene symbol: PROM1
  hgvsc: ENST00000510224.1:c.1595A>G
  hgvsp: ENSP00000426809.1:p.Tyr532Cys
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000427346
  ensembl transcript: ENST00000508167
  gene symbol: PROM1
  hgvsc: ENST00000508167.1:c.1568A>G
  hgvsp: ENSP00000427346.1:p.Tyr523Cys
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000443620
  ensembl transcript: ENST00000539194
  gene symbol: PROM1
  hgvsc: ENST00000539194.1:c.1595A>G
  hgvsp: ENSP00000443620.1:p.Tyr532Cys
  variant of: http://identifiers.org/hgnc/9454
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3031
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1247
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7402
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8806
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 963
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5185
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28571
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1527
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 702
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13132
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 575
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 234
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34192
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3013
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 560
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Tyr532Cys
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum

4-16000096-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16000096
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 16000096
    reference: chr 4
allele count: 1
allele frequency: 9.769250307731384e-6
allele num: 102362
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000445526
  ensembl transcript: ENST00000543373
  gene symbol: PROM1
  hgvsc: ENST00000543373.1:c.1567T>C
  hgvsp: ENSP00000445526.1:p.Tyr523His
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000438045
  ensembl transcript: ENST00000540805
  gene symbol: PROM1
  hgvsc: ENST00000540805.1:c.1594T>C
  hgvsp: ENSP00000438045.1:p.Tyr532His
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000426090
  ensembl transcript: ENST00000505450
  gene symbol: PROM1
  hgvsc: ENST00000505450.1:c.1567T>C
  hgvsp: ENSP00000426090.1:p.Tyr523His
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000427346
  ensembl transcript: ENST00000508167
  gene symbol: PROM1
  hgvsc: ENST00000508167.1:c.1567T>C
  hgvsp: ENSP00000427346.1:p.Tyr523His
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000426809
  ensembl transcript: ENST00000510224
  gene symbol: PROM1
  hgvsc: ENST00000510224.1:c.1594T>C
  hgvsp: ENSP00000426809.1:p.Tyr532His
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000415481
  ensembl transcript: ENST00000447510
  gene symbol: PROM1
  hgvsc: ENST00000447510.2:c.1594T>C
  hgvsp: ENSP00000415481.2:p.Tyr532His
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000443620
  ensembl transcript: ENST00000539194
  gene symbol: PROM1
  hgvsc: ENST00000539194.1:c.1594T>C
  hgvsp: ENSP00000443620.1:p.Tyr532His
  variant of: http://identifiers.org/hgnc/9454
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1217
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28360
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 963
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5350
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8896
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1525
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3028
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7384
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 322
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 493
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 238
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13380
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34140
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 838
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 679
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 280
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Tyr532His
num of homozygotes: 0
population: South Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: East Asian
population: African
population: European (Finnish)
reference allele: A
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: DP

4-16000099-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16000099
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 16000099
    reference: chr 4
allele count: 1
allele frequency: 9.872447972199186e-6
allele num: 101292
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000445526
  ensembl transcript: ENST00000543373
  gene symbol: PROM1
  hgvsc: ENST00000543373.1:c.1564C>T
  hgvsp: ENSP00000445526.1:p.Pro522Ser
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000438045
  ensembl transcript: ENST00000540805
  gene symbol: PROM1
  hgvsc: ENST00000540805.1:c.1591C>T
  hgvsp: ENSP00000438045.1:p.Pro531Ser
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000443620
  ensembl transcript: ENST00000539194
  gene symbol: PROM1
  hgvsc: ENST00000539194.1:c.1591C>T
  hgvsp: ENSP00000443620.1:p.Pro531Ser
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000426090
  ensembl transcript: ENST00000505450
  gene symbol: PROM1
  hgvsc: ENST00000505450.1:c.1564C>T
  hgvsp: ENSP00000426090.1:p.Pro522Ser
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000426809
  ensembl transcript: ENST00000510224
  gene symbol: PROM1
  hgvsc: ENST00000510224.1:c.1591C>T
  hgvsp: ENSP00000426809.1:p.Pro531Ser
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000427346
  ensembl transcript: ENST00000508167
  gene symbol: PROM1
  hgvsc: ENST00000508167.1:c.1564C>T
  hgvsp: ENSP00000427346.1:p.Pro522Ser
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000415481
  ensembl transcript: ENST00000447510
  gene symbol: PROM1
  hgvsc: ENST00000447510.2:c.1591C>T
  hgvsp: ENSP00000415481.2:p.Pro531Ser
  variant of: http://identifiers.org/hgnc/9454
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6173
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3050
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1534
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1204
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26979
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7408
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 965
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9384
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14580
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 281
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 821
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3013
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 654
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3039
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 263
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1008
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Pro531Ser
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Non-Finnish)
population: Other
population: East Asian
population: European (Finnish)
population: African
reference allele: G
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: InbreedingCoeff

4-16000102-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16000102
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 16000102
    reference: chr 4
allele count: 1
allele frequency: 9.991207737191272e-6
allele num: 100088
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000438045
  ensembl transcript: ENST00000540805
  gene symbol: PROM1
  hgvsc: ENST00000540805.1:c.1588A>G
  hgvsp: ENSP00000438045.1:p.Thr530Ala
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000426809
  ensembl transcript: ENST00000510224
  gene symbol: PROM1
  hgvsc: ENST00000510224.1:c.1588A>G
  hgvsp: ENSP00000426809.1:p.Thr530Ala
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000445526
  ensembl transcript: ENST00000543373
  gene symbol: PROM1
  hgvsc: ENST00000543373.1:c.1561A>G
  hgvsp: ENSP00000445526.1:p.Thr521Ala
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000427346
  ensembl transcript: ENST00000508167
  gene symbol: PROM1
  hgvsc: ENST00000508167.1:c.1561A>G
  hgvsp: ENSP00000427346.1:p.Thr521Ala
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000443620
  ensembl transcript: ENST00000539194
  gene symbol: PROM1
  hgvsc: ENST00000539194.1:c.1588A>G
  hgvsp: ENSP00000443620.1:p.Thr530Ala
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000426090
  ensembl transcript: ENST00000505450
  gene symbol: PROM1
  hgvsc: ENST00000505450.1:c.1561A>G
  hgvsp: ENSP00000426090.1:p.Thr521Ala
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000415481
  ensembl transcript: ENST00000447510
  gene symbol: PROM1
  hgvsc: ENST00000447510.2:c.1588A>G
  hgvsp: ENSP00000415481.2:p.Thr530Ala
  variant of: http://identifiers.org/hgnc/9454
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7141
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3016
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1222
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9968
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1525
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7373
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25453
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 964
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 173
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 366
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 305
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 218
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3013
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 280
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3006
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Thr530Ala
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Other
population: Latino
population: European (Finnish)
population: South Asian
population: African
reference allele: T
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff

4-16000104-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16000104
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 16000104
    reference: chr 4
allele count: 1
allele frequency: 1.010693133350852e-5
allele num: 98942
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000426090
  ensembl transcript: ENST00000505450
  gene symbol: PROM1
  hgvsc: ENST00000505450.1:c.1559A>G
  hgvsp: ENSP00000426090.1:p.Asp520Gly
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000427346
  ensembl transcript: ENST00000508167
  gene symbol: PROM1
  hgvsc: ENST00000508167.1:c.1559A>G
  hgvsp: ENSP00000427346.1:p.Asp520Gly
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000445526
  ensembl transcript: ENST00000543373
  gene symbol: PROM1
  hgvsc: ENST00000543373.1:c.1559A>G
  hgvsp: ENSP00000445526.1:p.Asp520Gly
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000415481
  ensembl transcript: ENST00000447510
  gene symbol: PROM1
  hgvsc: ENST00000447510.2:c.1586A>G
  hgvsp: ENSP00000415481.2:p.Asp529Gly
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000443620
  ensembl transcript: ENST00000539194
  gene symbol: PROM1
  hgvsc: ENST00000539194.1:c.1586A>G
  hgvsp: ENSP00000443620.1:p.Asp529Gly
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000426809
  ensembl transcript: ENST00000510224
  gene symbol: PROM1
  hgvsc: ENST00000510224.1:c.1586A>G
  hgvsp: ENSP00000426809.1:p.Asp529Gly
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000438045
  ensembl transcript: ENST00000540805
  gene symbol: PROM1
  hgvsc: ENST00000540805.1:c.1586A>G
  hgvsp: ENSP00000438045.1:p.Asp529Gly
  variant of: http://identifiers.org/hgnc/9454
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7937
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 963
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3022
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24075
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1288
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7331
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10491
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1523
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 177
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 933
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 406
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 342
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 988
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 277
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 217
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Asp529Gly
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
population: African
population: South Asian
population: East Asian
reference allele: T
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: QD

http://identifiers.org/exac.variant/4-16000105-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16000105
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 16000105
    reference: chr 4
allele count: 1
allele frequency: 1.017811704834606e-5
allele num: 98250
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000438045
  ensembl transcript: ENST00000540805
  gene symbol: PROM1
  hgvsc: ENST00000540805.1:c.1585G>T
  hgvsp: ENSP00000438045.1:p.Asp529Tyr
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000415481
  ensembl transcript: ENST00000447510
  gene symbol: PROM1
  hgvsc: ENST00000447510.2:c.1585G>T
  hgvsp: ENSP00000415481.2:p.Asp529Tyr
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000427346
  ensembl transcript: ENST00000508167
  gene symbol: PROM1
  hgvsc: ENST00000508167.1:c.1558G>T
  hgvsp: ENSP00000427346.1:p.Asp520Tyr
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000443620
  ensembl transcript: ENST00000539194
  gene symbol: PROM1
  hgvsc: ENST00000539194.1:c.1585G>T
  hgvsp: ENSP00000443620.1:p.Asp529Tyr
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000426090
  ensembl transcript: ENST00000505450
  gene symbol: PROM1
  hgvsc: ENST00000505450.1:c.1558G>T
  hgvsp: ENSP00000426090.1:p.Asp520Tyr
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000426809
  ensembl transcript: ENST00000510224
  gene symbol: PROM1
  hgvsc: ENST00000510224.1:c.1585G>T
  hgvsp: ENSP00000426809.1:p.Asp529Tyr
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000445526
  ensembl transcript: ENST00000543373
  gene symbol: PROM1
  hgvsc: ENST00000543373.1:c.1558G>T
  hgvsp: ENSP00000445526.1:p.Asp520Tyr
  variant of: http://identifiers.org/hgnc/9454
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7334
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3037
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23199
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8450
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 967
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10757
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1332
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1531
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 357
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2949
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 680
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3012
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 279
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 384
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 990
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 406
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Asp529Tyr
num of homozygotes: 0
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Latino
population: African
population: East Asian
reference allele: C
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum

4-16000106-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16000106
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 16000106
    reference: chr 4
allele count: 1
allele frequency: 1.025157361655014e-5
allele num: 97546
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000443620
  ensembl transcript: ENST00000539194
  gene symbol: PROM1
  hgvsc: ENST00000539194.1:c.1584G>A
  hgvsp: ENST00000539194.1:c.1584G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000426809
  ensembl transcript: ENST00000510224
  gene symbol: PROM1
  hgvsc: ENST00000510224.1:c.1584G>A
  hgvsp: ENST00000510224.1:c.1584G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000438045
  ensembl transcript: ENST00000540805
  gene symbol: PROM1
  hgvsc: ENST00000540805.1:c.1584G>A
  hgvsp: ENST00000540805.1:c.1584G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000426090
  ensembl transcript: ENST00000505450
  gene symbol: PROM1
  hgvsc: ENST00000505450.1:c.1557G>A
  hgvsp: ENST00000505450.1:c.1557G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000415481
  ensembl transcript: ENST00000447510
  gene symbol: PROM1
  hgvsc: ENST00000447510.2:c.1584G>A
  hgvsp: ENST00000447510.2:c.1584G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000445526
  ensembl transcript: ENST00000543373
  gene symbol: PROM1
  hgvsc: ENST00000543373.1:c.1557G>A
  hgvsp: ENST00000543373.1:c.1557G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000427346
  ensembl transcript: ENST00000508167
  gene symbol: PROM1
  hgvsc: ENST00000508167.1:c.1557G>A
  hgvsp: ENST00000508167.1:c.1557G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9454
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 969
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11050
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1525
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3080
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7352
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8993
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1347
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22264
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 970
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 181
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 219
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 312
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 840
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18746
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 405
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Leu528Leu
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: DP

4-16000111-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16000111
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 16000111
    reference: chr 4
allele count: 1
allele frequency: 1.059434262104037e-5
allele num: 94390
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000445526
  ensembl transcript: ENST00000543373
  gene symbol: PROM1
  hgvsc: ENST00000543373.1:c.1552G>A
  hgvsp: ENSP00000445526.1:p.Val518Ile
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000426090
  ensembl transcript: ENST00000505450
  gene symbol: PROM1
  hgvsc: ENST00000505450.1:c.1552G>A
  hgvsp: ENSP00000426090.1:p.Val518Ile
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000438045
  ensembl transcript: ENST00000540805
  gene symbol: PROM1
  hgvsc: ENST00000540805.1:c.1579G>A
  hgvsp: ENSP00000438045.1:p.Val527Ile
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000443620
  ensembl transcript: ENST00000539194
  gene symbol: PROM1
  hgvsc: ENST00000539194.1:c.1579G>A
  hgvsp: ENSP00000443620.1:p.Val527Ile
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000427346
  ensembl transcript: ENST00000508167
  gene symbol: PROM1
  hgvsc: ENST00000508167.1:c.1552G>A
  hgvsp: ENSP00000427346.1:p.Val518Ile
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000426809
  ensembl transcript: ENST00000510224
  gene symbol: PROM1
  hgvsc: ENST00000510224.1:c.1579G>A
  hgvsp: ENSP00000426809.1:p.Val527Ile
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000415481
  ensembl transcript: ENST00000447510
  gene symbol: PROM1
  hgvsc: ENST00000447510.2:c.1579G>A
  hgvsp: ENSP00000415481.2:p.Val527Ile
  variant of: http://identifiers.org/hgnc/9454
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12504
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18276
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 548
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11694
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2995
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1520
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1553
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 964
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6882
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 405
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 674
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24618
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 777
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22575
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Val527Ile
num of homozygotes: 0
population: South Asian
population: Other
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: DP

4-16000112-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16000112
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 16000112
    reference: chr 4
allele count: 7
allele frequency: 7.490957344348608e-5
allele num: 93446
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000443620
  ensembl transcript: ENST00000539194
  gene symbol: PROM1
  hgvsc: ENST00000539194.1:c.1579-1G>C
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000445526
  ensembl transcript: ENST00000543373
  gene symbol: PROM1
  hgvsc: ENST00000543373.1:c.1552-1G>C
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000427346
  ensembl transcript: ENST00000508167
  gene symbol: PROM1
  hgvsc: ENST00000508167.1:c.1552-1G>C
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000415481
  ensembl transcript: ENST00000447510
  gene symbol: PROM1
  hgvsc: ENST00000447510.2:c.1579-1G>C
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000438045
  ensembl transcript: ENST00000540805
  gene symbol: PROM1
  hgvsc: ENST00000540805.1:c.1579-1G>C
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000426090
  ensembl transcript: ENST00000505450
  gene symbol: PROM1
  hgvsc: ENST00000505450.1:c.1552-1G>C
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: true
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000426809
  ensembl transcript: ENST00000510224
  gene symbol: PROM1
  hgvsc: ENST00000510224.1:c.1579-1G>C
  variant of: http://identifiers.org/hgnc/9454
canonical: true
consequence: splice acceptor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1522
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17266
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12867
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6708
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 617
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1597
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3001
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 12392
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 963
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 444
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 150
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2789
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 134
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 170
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23563
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23526
  bin: 2.25e1
  variant carriers: 0
hgvs: c.1579-1G>C
num of homozygotes: 0
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: DP
site quality: BaseQRankSum

4-16000117-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16000117
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 16000117
    reference: chr 4
allele count: 63
allele frequency: 7.071341983567548e-4
allele num: 89092
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000415481
  ensembl transcript: ENST00000447510
  gene symbol: PROM1
  hgvsc: ENST00000447510.2:c.1579-6T>C
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000438045
  ensembl transcript: ENST00000540805
  gene symbol: PROM1
  hgvsc: ENST00000540805.1:c.1579-6T>C
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000426090
  ensembl transcript: ENST00000505450
  gene symbol: PROM1
  hgvsc: ENST00000505450.1:c.1552-6T>C
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000426809
  ensembl transcript: ENST00000510224
  gene symbol: PROM1
  hgvsc: ENST00000510224.1:c.1579-6T>C
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000427346
  ensembl transcript: ENST00000508167
  gene symbol: PROM1
  hgvsc: ENST00000508167.1:c.1552-6T>C
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000445526
  ensembl transcript: ENST00000543373
  gene symbol: PROM1
  hgvsc: ENST00000543373.1:c.1552-6T>C
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000443620
  ensembl transcript: ENST00000539194
  gene symbol: PROM1
  hgvsc: ENST00000539194.1:c.1579-6T>C
  variant of: http://identifiers.org/hgnc/9454
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1517
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5480
  bin: 2.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 2931
  bin: 3.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1168
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 964
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 16440
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1899
  bin: 1.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 644
  bin: 9.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14450
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 548
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12068
  bin: 2.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 937
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 284
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28427
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 167
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 545
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1279
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1294
  bin: 3.25e1
  variant carriers: 0
hgvs: c.1579-6T>C
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Other
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
reference allele: A
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP

4-16000123-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16000123
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 16000123
    reference: chr 4
allele count: 5
allele frequency: 5.897617362585515e-5
allele num: 84780
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000445526
  ensembl transcript: ENST00000543373
  gene symbol: PROM1
  hgvsc: ENST00000543373.1:c.1552-12A>C
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000426809
  ensembl transcript: ENST00000510224
  gene symbol: PROM1
  hgvsc: ENST00000510224.1:c.1579-12A>C
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000427346
  ensembl transcript: ENST00000508167
  gene symbol: PROM1
  hgvsc: ENST00000508167.1:c.1552-12A>C
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000426090
  ensembl transcript: ENST00000505450
  gene symbol: PROM1
  hgvsc: ENST00000505450.1:c.1552-12A>C
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000438045
  ensembl transcript: ENST00000540805
  gene symbol: PROM1
  hgvsc: ENST00000540805.1:c.1579-12A>C
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000415481
  ensembl transcript: ENST00000447510
  gene symbol: PROM1
  hgvsc: ENST00000447510.2:c.1579-12A>C
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000443620
  ensembl transcript: ENST00000539194
  gene symbol: PROM1
  hgvsc: ENST00000539194.1:c.1579-12A>C
  variant of: http://identifiers.org/hgnc/9454
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 960
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2002
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1508
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19700
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15486
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2799
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2196
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4395
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7864
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2205
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 403
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 265
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 189
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 666
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 158
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12486
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 930
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 691
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Latino
population: African
population: Other
reference allele: T
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: DP

4-16000126-GA-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16000126
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 16000125
    reference: chr 4
allele count: 10
allele frequency: 1.205574576843323e-4
allele num: 82948
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000427346
  ensembl transcript: ENST00000508167
  gene symbol: PROM1
  hgvsc: ENST00000508167.1:c.1552-16delT
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000426090
  ensembl transcript: ENST00000505450
  gene symbol: PROM1
  hgvsc: ENST00000505450.1:c.1552-16delT
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000438045
  ensembl transcript: ENST00000540805
  gene symbol: PROM1
  hgvsc: ENST00000540805.1:c.1579-16delT
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000415481
  ensembl transcript: ENST00000447510
  gene symbol: PROM1
  hgvsc: ENST00000447510.2:c.1579-16delT
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000426809
  ensembl transcript: ENST00000510224
  gene symbol: PROM1
  hgvsc: ENST00000510224.1:c.1579-16delT
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000445526
  ensembl transcript: ENST00000543373
  gene symbol: PROM1
  hgvsc: ENST00000543373.1:c.1552-16delT
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000443620
  ensembl transcript: ENST00000539194
  gene symbol: PROM1
  hgvsc: ENST00000539194.1:c.1579-16delT
  variant of: http://identifiers.org/hgnc/9454
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2751
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2755
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6392
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1509
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3973
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 961
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20762
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2019
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15777
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3006
  bin: 9.75e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 1981
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1568
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 406
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 469
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 690
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 277
  bin: 8.75e1
  variant carriers: 1
num of homozygotes: 0
population: East Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: South Asian
population: African
population: European (Finnish)
reference allele: GA
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum

4-16000136-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16000136
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 16000136
    reference: chr 4
allele count: 27
allele frequency: 3.674669279764821e-4
allele num: 73476
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000438045
  ensembl transcript: ENST00000540805
  gene symbol: PROM1
  hgvsc: ENST00000540805.1:c.1579-25G>A
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000426809
  ensembl transcript: ENST00000510224
  gene symbol: PROM1
  hgvsc: ENST00000510224.1:c.1579-25G>A
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000426090
  ensembl transcript: ENST00000505450
  gene symbol: PROM1
  hgvsc: ENST00000505450.1:c.1552-25G>A
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000443620
  ensembl transcript: ENST00000539194
  gene symbol: PROM1
  hgvsc: ENST00000539194.1:c.1579-25G>A
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000427346
  ensembl transcript: ENST00000508167
  gene symbol: PROM1
  hgvsc: ENST00000508167.1:c.1552-25G>A
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000445526
  ensembl transcript: ENST00000543373
  gene symbol: PROM1
  hgvsc: ENST00000543373.1:c.1552-25G>A
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000415481
  ensembl transcript: ENST00000447510
  gene symbol: PROM1
  hgvsc: ENST00000447510.2:c.1579-25G>A
  variant of: http://identifiers.org/hgnc/9454
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6081
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2842
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 549
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2699
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1489
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 957
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2190
  bin: 1.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21256
  bin: 1.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 16683
  bin: 7.5e0
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2590
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2760
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7412
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1743
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 436
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 273
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1046
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 406
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1837
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 668
  bin: 7.25e1
  variant carriers: 1
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: Other
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: DP

4-16000137-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16000137
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 16000137
    reference: chr 4
allele count: 1
allele frequency: 1.385271790325262e-5
allele num: 72188
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000445526
  ensembl transcript: ENST00000543373
  gene symbol: PROM1
  hgvsc: ENST00000543373.1:c.1552-26C>T
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000415481
  ensembl transcript: ENST00000447510
  gene symbol: PROM1
  hgvsc: ENST00000447510.2:c.1579-26C>T
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000438045
  ensembl transcript: ENST00000540805
  gene symbol: PROM1
  hgvsc: ENST00000540805.1:c.1579-26C>T
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000427346
  ensembl transcript: ENST00000508167
  gene symbol: PROM1
  hgvsc: ENST00000508167.1:c.1552-26C>T
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000443620
  ensembl transcript: ENST00000539194
  gene symbol: PROM1
  hgvsc: ENST00000539194.1:c.1579-26C>T
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000426809
  ensembl transcript: ENST00000510224
  gene symbol: PROM1
  hgvsc: ENST00000510224.1:c.1579-26C>T
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000426090
  ensembl transcript: ENST00000505450
  gene symbol: PROM1
  hgvsc: ENST00000505450.1:c.1552-26C>T
  variant of: http://identifiers.org/hgnc/9454
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6469
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2827
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16882
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21082
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 632
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2569
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2083
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2423
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 954
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1486
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 548
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7947
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2989
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 664
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 937
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1675
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 495
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1824
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5718
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 658
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
reference allele: G
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum

4-16000137-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16000137
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 16000137
    reference: chr 4
allele count: 3
allele frequency: 4.155815370975786e-5
allele num: 72188
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000426809
  ensembl transcript: ENST00000510224
  gene symbol: PROM1
  hgvsc: ENST00000510224.1:c.1579-26C>G
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000443620
  ensembl transcript: ENST00000539194
  gene symbol: PROM1
  hgvsc: ENST00000539194.1:c.1579-26C>G
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000445526
  ensembl transcript: ENST00000543373
  gene symbol: PROM1
  hgvsc: ENST00000543373.1:c.1552-26C>G
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000415481
  ensembl transcript: ENST00000447510
  gene symbol: PROM1
  hgvsc: ENST00000447510.2:c.1579-26C>G
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000427346
  ensembl transcript: ENST00000508167
  gene symbol: PROM1
  hgvsc: ENST00000508167.1:c.1552-26C>G
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000438045
  ensembl transcript: ENST00000540805
  gene symbol: PROM1
  hgvsc: ENST00000540805.1:c.1579-26C>G
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000426090
  ensembl transcript: ENST00000505450
  gene symbol: PROM1
  hgvsc: ENST00000505450.1:c.1552-26C>G
  variant of: http://identifiers.org/hgnc/9454
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 21082
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2569
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 632
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2423
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2827
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6469
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 548
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 954
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16882
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2083
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1486
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1824
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 909
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 937
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 658
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7947
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5718
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1150
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 465
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: African
population: Latino
population: Other
population: East Asian
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ

http://identifiers.org/exac.variant/4-16000152-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16000152
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 16000152
    reference: chr 4
allele count: 0
allele frequency: 0.0e0
allele num: 49600
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000426090
  ensembl transcript: ENST00000505450
  gene symbol: PROM1
  hgvsc: ENST00000505450.1:c.1552-41G>T
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000415481
  ensembl transcript: ENST00000447510
  gene symbol: PROM1
  hgvsc: ENST00000447510.2:c.1579-41G>T
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000445526
  ensembl transcript: ENST00000543373
  gene symbol: PROM1
  hgvsc: ENST00000543373.1:c.1552-41G>T
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000443620
  ensembl transcript: ENST00000539194
  gene symbol: PROM1
  hgvsc: ENST00000539194.1:c.1579-41G>T
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000438045
  ensembl transcript: ENST00000540805
  gene symbol: PROM1
  hgvsc: ENST00000540805.1:c.1579-41G>T
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000426809
  ensembl transcript: ENST00000510224
  gene symbol: PROM1
  hgvsc: ENST00000510224.1:c.1579-41G>T
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000427346
  ensembl transcript: ENST00000508167
  gene symbol: PROM1
  hgvsc: ENST00000508167.1:c.1552-41G>T
  variant of: http://identifiers.org/hgnc/9454
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1331
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11818
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2878
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 621
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 632
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1706
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23968
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2025
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9951
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 909
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1418
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 304
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2561
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2982
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1318
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2101
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1355
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17162
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 873
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 615
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: Other
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: C
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD

4-16000159-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16000159
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 16000159
    reference: chr 4
allele count: 2
allele frequency: 5.415944540727903e-5
allele num: 36928
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000438045
  ensembl transcript: ENST00000540805
  gene symbol: PROM1
  hgvsc: ENST00000540805.1:c.1579-48T>C
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000443620
  ensembl transcript: ENST00000539194
  gene symbol: PROM1
  hgvsc: ENST00000539194.1:c.1579-48T>C
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000426090
  ensembl transcript: ENST00000505450
  gene symbol: PROM1
  hgvsc: ENST00000505450.1:c.1552-48T>C
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000427346
  ensembl transcript: ENST00000508167
  gene symbol: PROM1
  hgvsc: ENST00000508167.1:c.1552-48T>C
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000426809
  ensembl transcript: ENST00000510224
  gene symbol: PROM1
  hgvsc: ENST00000510224.1:c.1579-48T>C
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000415481
  ensembl transcript: ENST00000447510
  gene symbol: PROM1
  hgvsc: ENST00000447510.2:c.1579-48T>C
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000445526
  ensembl transcript: ENST00000543373
  gene symbol: PROM1
  hgvsc: ENST00000543373.1:c.1552-48T>C
  variant of: http://identifiers.org/hgnc/9454
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1720
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10388
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26076
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1785
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2422
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 895
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1854
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9210
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1263
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 632
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1034
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1610
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1039
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 829
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 560
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 242
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6620
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 700
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1753
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4358
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: Other
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
reference allele: A
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum

4-16000160-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16000160
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 16000160
    reference: chr 4
allele count: 0
allele frequency: 0.0e0
allele num: 37044
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000426090
  ensembl transcript: ENST00000505450
  gene symbol: PROM1
  hgvsc: ENST00000505450.1:c.1552-49A>G
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000443620
  ensembl transcript: ENST00000539194
  gene symbol: PROM1
  hgvsc: ENST00000539194.1:c.1579-49A>G
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000438045
  ensembl transcript: ENST00000540805
  gene symbol: PROM1
  hgvsc: ENST00000540805.1:c.1579-49A>G
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000415481
  ensembl transcript: ENST00000447510
  gene symbol: PROM1
  hgvsc: ENST00000447510.2:c.1579-49A>G
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000427346
  ensembl transcript: ENST00000508167
  gene symbol: PROM1
  hgvsc: ENST00000508167.1:c.1552-49A>G
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000426809
  ensembl transcript: ENST00000510224
  gene symbol: PROM1
  hgvsc: ENST00000510224.1:c.1579-49A>G
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000445526
  ensembl transcript: ENST00000543373
  gene symbol: PROM1
  hgvsc: ENST00000543373.1:c.1552-49A>G
  variant of: http://identifiers.org/hgnc/9454
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10386
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1781
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2428
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1713
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1862
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26091
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9197
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1261
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 632
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 899
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10419
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1113
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15411
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 833
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 425
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 359
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 701
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7717
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 242
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4312
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: African
population: European (Finnish)
reference allele: T
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum

4-16000161-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16000161
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 16000161
    reference: chr 4
allele count: 0
allele frequency: 0.0e0
allele num: 37110
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000415481
  ensembl transcript: ENST00000447510
  gene symbol: PROM1
  hgvsc: ENST00000447510.2:c.1579-50T>A
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000438045
  ensembl transcript: ENST00000540805
  gene symbol: PROM1
  hgvsc: ENST00000540805.1:c.1579-50T>A
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000426809
  ensembl transcript: ENST00000510224
  gene symbol: PROM1
  hgvsc: ENST00000510224.1:c.1579-50T>A
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000427346
  ensembl transcript: ENST00000508167
  gene symbol: PROM1
  hgvsc: ENST00000508167.1:c.1552-50T>A
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000445526
  ensembl transcript: ENST00000543373
  gene symbol: PROM1
  hgvsc: ENST00000543373.1:c.1552-50T>A
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000426090
  ensembl transcript: ENST00000505450
  gene symbol: PROM1
  hgvsc: ENST00000505450.1:c.1552-50T>A
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000443620
  ensembl transcript: ENST00000539194
  gene symbol: PROM1
  hgvsc: ENST00000539194.1:c.1579-50T>A
  variant of: http://identifiers.org/hgnc/9454
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1775
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2422
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1260
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10388
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9211
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26083
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1871
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 632
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 900
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1710
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 242
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4246
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 826
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1760
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 700
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 320
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7727
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10371
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2975
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1037
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD

4-16002070-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16002070
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 16002070
    reference: chr 4
allele count: 1
allele frequency: 9.276954190400208e-6
allele num: 107794
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000445526
  ensembl transcript: ENST00000543373
  gene symbol: PROM1
  hgvsc: ENST00000543373.1:c.1551+49G>A
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000438045
  ensembl transcript: ENST00000540805
  gene symbol: PROM1
  hgvsc: ENST00000540805.1:c.1578+49G>A
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000427346
  ensembl transcript: ENST00000508167
  gene symbol: PROM1
  hgvsc: ENST00000508167.1:c.1551+49G>A
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000415481
  ensembl transcript: ENST00000447510
  gene symbol: PROM1
  hgvsc: ENST00000447510.2:c.1578+49G>A
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000443620
  ensembl transcript: ENST00000539194
  gene symbol: PROM1
  hgvsc: ENST00000539194.1:c.1578+49G>A
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000426090
  ensembl transcript: ENST00000505450
  gene symbol: PROM1
  hgvsc: ENST00000505450.1:c.1551+49G>A
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000426809
  ensembl transcript: ENST00000510224
  gene symbol: PROM1
  hgvsc: ENST00000510224.1:c.1578+49G>A
  variant of: http://identifiers.org/hgnc/9454
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6576
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1499
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5718
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12501
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15899
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 589
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14595
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 170
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5862
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 401
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3276
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4772
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2316
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 653
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 683
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 192
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 248
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: DP

4-16002104-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16002104
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 16002104
    reference: chr 4
allele count: 1
allele frequency: 9.106804604400409e-6
allele num: 109808
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000426090
  ensembl transcript: ENST00000505450
  gene symbol: PROM1
  hgvsc: ENST00000505450.1:c.1551+15C>T
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000427346
  ensembl transcript: ENST00000508167
  gene symbol: PROM1
  hgvsc: ENST00000508167.1:c.1551+15C>T
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000438045
  ensembl transcript: ENST00000540805
  gene symbol: PROM1
  hgvsc: ENST00000540805.1:c.1578+15C>T
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000426809
  ensembl transcript: ENST00000510224
  gene symbol: PROM1
  hgvsc: ENST00000510224.1:c.1578+15C>T
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000415481
  ensembl transcript: ENST00000447510
  gene symbol: PROM1
  hgvsc: ENST00000447510.2:c.1578+15C>T
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000443620
  ensembl transcript: ENST00000539194
  gene symbol: PROM1
  hgvsc: ENST00000539194.1:c.1578+15C>T
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000445526
  ensembl transcript: ENST00000543373
  gene symbol: PROM1
  hgvsc: ENST00000543373.1:c.1551+15C>T
  variant of: http://identifiers.org/hgnc/9454
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1688
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3646
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 595
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8451
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5192
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29108
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8973
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1089
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2280
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 172
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3641
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1010
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2981
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 669
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 237
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1105
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: Other
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: QD
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD

4-16002104-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16002104
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 16002104
    reference: chr 4
allele count: 1
allele frequency: 9.106804604400409e-6
allele num: 109808
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000438045
  ensembl transcript: ENST00000540805
  gene symbol: PROM1
  hgvsc: ENST00000540805.1:c.1578+15C>A
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000443620
  ensembl transcript: ENST00000539194
  gene symbol: PROM1
  hgvsc: ENST00000539194.1:c.1578+15C>A
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000445526
  ensembl transcript: ENST00000543373
  gene symbol: PROM1
  hgvsc: ENST00000543373.1:c.1551+15C>A
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000426809
  ensembl transcript: ENST00000510224
  gene symbol: PROM1
  hgvsc: ENST00000510224.1:c.1578+15C>A
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000415481
  ensembl transcript: ENST00000447510
  gene symbol: PROM1
  hgvsc: ENST00000447510.2:c.1578+15C>A
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000426090
  ensembl transcript: ENST00000505450
  gene symbol: PROM1
  hgvsc: ENST00000505450.1:c.1551+15C>A
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000427346
  ensembl transcript: ENST00000508167
  gene symbol: PROM1
  hgvsc: ENST00000508167.1:c.1551+15C>A
  variant of: http://identifiers.org/hgnc/9454
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3646
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1688
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8451
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5192
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8973
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 595
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29108
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 172
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2760
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1089
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 148
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1010
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 381
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2280
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 505
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 180
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP

4-16002110-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16002110
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 16002110
    reference: chr 4
allele count: 1
allele frequency: 9.056494412142948e-6
allele num: 110418
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000427346
  ensembl transcript: ENST00000508167
  gene symbol: PROM1
  hgvsc: ENST00000508167.1:c.1551+9G>C
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000415481
  ensembl transcript: ENST00000447510
  gene symbol: PROM1
  hgvsc: ENST00000447510.2:c.1578+9G>C
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000438045
  ensembl transcript: ENST00000540805
  gene symbol: PROM1
  hgvsc: ENST00000540805.1:c.1578+9G>C
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000443620
  ensembl transcript: ENST00000539194
  gene symbol: PROM1
  hgvsc: ENST00000539194.1:c.1578+9G>C
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000426090
  ensembl transcript: ENST00000505450
  gene symbol: PROM1
  hgvsc: ENST00000505450.1:c.1551+9G>C
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000426809
  ensembl transcript: ENST00000510224
  gene symbol: PROM1
  hgvsc: ENST00000510224.1:c.1578+9G>C
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000445526
  ensembl transcript: ENST00000543373
  gene symbol: PROM1
  hgvsc: ENST00000543373.1:c.1551+9G>C
  variant of: http://identifiers.org/hgnc/9454
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1750
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4940
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 602
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9451
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3013
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30947
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6973
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3008
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6225
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 801
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2183
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 390
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 876
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1963
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1191
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: South Asian
reference allele: C
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: QD

4-16002112-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16002112
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 16002112
    reference: chr 4
allele count: 1
allele frequency: 9.030813134414622e-6
allele num: 110732
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000426809
  ensembl transcript: ENST00000510224
  gene symbol: PROM1
  hgvsc: ENST00000510224.1:c.1578+7A>G
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000445526
  ensembl transcript: ENST00000543373
  gene symbol: PROM1
  hgvsc: ENST00000543373.1:c.1551+7A>G
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000427346
  ensembl transcript: ENST00000508167
  gene symbol: PROM1
  hgvsc: ENST00000508167.1:c.1551+7A>G
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000443620
  ensembl transcript: ENST00000539194
  gene symbol: PROM1
  hgvsc: ENST00000539194.1:c.1578+7A>G
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000438045
  ensembl transcript: ENST00000540805
  gene symbol: PROM1
  hgvsc: ENST00000540805.1:c.1578+7A>G
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000415481
  ensembl transcript: ENST00000447510
  gene symbol: PROM1
  hgvsc: ENST00000447510.2:c.1578+7A>G
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000426090
  ensembl transcript: ENST00000505450
  gene symbol: PROM1
  hgvsc: ENST00000505450.1:c.1551+7A>G
  variant of: http://identifiers.org/hgnc/9454
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4825
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1715
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 599
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6484
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2728
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31777
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9555
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 622
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1837
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3104
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36989
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 419
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 972
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 1.25e1
  variant carriers: 0
hgvs: c.1578+7A>G
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
population: African
population: Other
population: East Asian
reference allele: T
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum

http://identifiers.org/exac.variant/4-16002120-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16002120
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 16002120
    reference: chr 4
allele count: 1
allele frequency: 8.966036653157838e-6
allele num: 111532
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000445526
  ensembl transcript: ENST00000543373
  gene symbol: PROM1
  hgvsc: ENST00000543373.1:c.1550G>T
  hgvsp: ENSP00000445526.1:p.Arg517Leu
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000415481
  ensembl transcript: ENST00000447510
  gene symbol: PROM1
  hgvsc: ENST00000447510.2:c.1577G>T
  hgvsp: ENSP00000415481.2:p.Arg526Leu
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000438045
  ensembl transcript: ENST00000540805
  gene symbol: PROM1
  hgvsc: ENST00000540805.1:c.1577G>T
  hgvsp: ENSP00000438045.1:p.Arg526Leu
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000426809
  ensembl transcript: ENST00000510224
  gene symbol: PROM1
  hgvsc: ENST00000510224.1:c.1577G>T
  hgvsp: ENSP00000426809.1:p.Arg526Leu
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000443620
  ensembl transcript: ENST00000539194
  gene symbol: PROM1
  hgvsc: ENST00000539194.1:c.1577G>T
  hgvsp: ENSP00000443620.1:p.Arg526Leu
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000426090
  ensembl transcript: ENST00000505450
  gene symbol: PROM1
  hgvsc: ENST00000505450.1:c.1550G>T
  hgvsp: ENSP00000426090.1:p.Arg517Leu
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000427346
  ensembl transcript: ENST00000508167
  gene symbol: PROM1
  hgvsc: ENST00000508167.1:c.1550G>T
  hgvsp: ENSP00000427346.1:p.Arg517Leu
  variant of: http://identifiers.org/hgnc/9454
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5145
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1860
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4373
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32974
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 615
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2378
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10346
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38024
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 131
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1529
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2164
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2324
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1533
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Arg526Leu
num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: African
population: Other
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ

4-16002120-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16002120
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 16002120
    reference: chr 4
allele count: 23
allele frequency: 2.062188430226303e-4
allele num: 111532
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000443620
  ensembl transcript: ENST00000539194
  gene symbol: PROM1
  hgvsc: ENST00000539194.1:c.1577G>A
  hgvsp: ENSP00000443620.1:p.Arg526Gln
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000445526
  ensembl transcript: ENST00000543373
  gene symbol: PROM1
  hgvsc: ENST00000543373.1:c.1550G>A
  hgvsp: ENSP00000445526.1:p.Arg517Gln
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000438045
  ensembl transcript: ENST00000540805
  gene symbol: PROM1
  hgvsc: ENST00000540805.1:c.1577G>A
  hgvsp: ENSP00000438045.1:p.Arg526Gln
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000426090
  ensembl transcript: ENST00000505450
  gene symbol: PROM1
  hgvsc: ENST00000505450.1:c.1550G>A
  hgvsp: ENSP00000426090.1:p.Arg517Gln
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000415481
  ensembl transcript: ENST00000447510
  gene symbol: PROM1
  hgvsc: ENST00000447510.2:c.1577G>A
  hgvsp: ENSP00000415481.2:p.Arg526Gln
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000426809
  ensembl transcript: ENST00000510224
  gene symbol: PROM1
  hgvsc: ENST00000510224.1:c.1577G>A
  hgvsp: ENSP00000426809.1:p.Arg526Gln
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000427346
  ensembl transcript: ENST00000508167
  gene symbol: PROM1
  hgvsc: ENST00000508167.1:c.1550G>A
  hgvsp: ENSP00000427346.1:p.Arg517Gln
  variant of: http://identifiers.org/hgnc/9454
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 32974
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1860
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 615
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 10346
  bin: 2.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 5145
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2378
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4373
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 1533
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 239
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 567
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 870
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 131
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5645
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 625
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Arg526Gln
num of homozygotes: 0
population: European (Finnish)
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: C
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD

4-16002121-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16002121
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 16002121
    reference: chr 4
allele count: 8
allele frequency: 7.159092942924132e-5
allele num: 111746
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000426090
  ensembl transcript: ENST00000505450
  gene symbol: PROM1
  hgvsc: ENST00000505450.1:c.1549C>T
  hgvsp: ENSP00000426090.1:p.Arg517Trp
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000426809
  ensembl transcript: ENST00000510224
  gene symbol: PROM1
  hgvsc: ENST00000510224.1:c.1576C>T
  hgvsp: ENSP00000426809.1:p.Arg526Trp
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000443620
  ensembl transcript: ENST00000539194
  gene symbol: PROM1
  hgvsc: ENST00000539194.1:c.1576C>T
  hgvsp: ENSP00000443620.1:p.Arg526Trp
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000438045
  ensembl transcript: ENST00000540805
  gene symbol: PROM1
  hgvsc: ENST00000540805.1:c.1576C>T
  hgvsp: ENSP00000438045.1:p.Arg526Trp
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000427346
  ensembl transcript: ENST00000508167
  gene symbol: PROM1
  hgvsc: ENST00000508167.1:c.1549C>T
  hgvsp: ENSP00000427346.1:p.Arg517Trp
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000445526
  ensembl transcript: ENST00000543373
  gene symbol: PROM1
  hgvsc: ENST00000543373.1:c.1549C>T
  hgvsp: ENSP00000445526.1:p.Arg517Trp
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000415481
  ensembl transcript: ENST00000447510
  gene symbol: PROM1
  hgvsc: ENST00000447510.2:c.1576C>T
  hgvsp: ENSP00000415481.2:p.Arg526Trp
  variant of: http://identifiers.org/hgnc/9454
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2310
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4928
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4262
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 607
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33209
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 10495
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1897
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1008
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1436
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 525
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 386
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 504
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Arg526Trp
num of homozygotes: 0
population: East Asian
population: Other
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: MQ

4-16002125-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16002125
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 16002125
    reference: chr 4
allele count: 2
allele frequency: 1.780183002812689e-5
allele num: 112348
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000426809
  ensembl transcript: ENST00000510224
  gene symbol: PROM1
  hgvsc: ENST00000510224.1:c.1572A>T
  hgvsp: ENSP00000426809.1:p.Leu524Phe
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000443620
  ensembl transcript: ENST00000539194
  gene symbol: PROM1
  hgvsc: ENST00000539194.1:c.1572A>T
  hgvsp: ENSP00000443620.1:p.Leu524Phe
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000426090
  ensembl transcript: ENST00000505450
  gene symbol: PROM1
  hgvsc: ENST00000505450.1:c.1545A>T
  hgvsp: ENSP00000426090.1:p.Leu515Phe
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000415481
  ensembl transcript: ENST00000447510
  gene symbol: PROM1
  hgvsc: ENST00000447510.2:c.1572A>T
  hgvsp: ENSP00000415481.2:p.Leu524Phe
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000445526
  ensembl transcript: ENST00000543373
  gene symbol: PROM1
  hgvsc: ENST00000543373.1:c.1545A>T
  hgvsp: ENSP00000445526.1:p.Leu515Phe
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000438045
  ensembl transcript: ENST00000540805
  gene symbol: PROM1
  hgvsc: ENST00000540805.1:c.1572A>T
  hgvsp: ENSP00000438045.1:p.Leu524Phe
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000427346
  ensembl transcript: ENST00000508167
  gene symbol: PROM1
  hgvsc: ENST00000508167.1:c.1545A>T
  hgvsp: ENSP00000427346.1:p.Leu515Phe
  variant of: http://identifiers.org/hgnc/9454
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2120
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4090
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4395
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34028
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10662
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1832
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1778
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 738
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40223
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 465
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5319
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 397
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 757
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Leu524Phe
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
population: Other
reference allele: T
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: QD

4-16002125-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16002125
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 16002125
    reference: chr 4
allele count: 3
allele frequency: 2.670274504219034e-5
allele num: 112348
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000426809
  ensembl transcript: ENST00000510224
  gene symbol: PROM1
  hgvsc: ENST00000510224.1:c.1572A>C
  hgvsp: ENSP00000426809.1:p.Leu524Phe
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000415481
  ensembl transcript: ENST00000447510
  gene symbol: PROM1
  hgvsc: ENST00000447510.2:c.1572A>C
  hgvsp: ENSP00000415481.2:p.Leu524Phe
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000426090
  ensembl transcript: ENST00000505450
  gene symbol: PROM1
  hgvsc: ENST00000505450.1:c.1545A>C
  hgvsp: ENSP00000426090.1:p.Leu515Phe
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000427346
  ensembl transcript: ENST00000508167
  gene symbol: PROM1
  hgvsc: ENST00000508167.1:c.1545A>C
  hgvsp: ENSP00000427346.1:p.Leu515Phe
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000445526
  ensembl transcript: ENST00000543373
  gene symbol: PROM1
  hgvsc: ENST00000543373.1:c.1545A>C
  hgvsp: ENSP00000445526.1:p.Leu515Phe
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000443620
  ensembl transcript: ENST00000539194
  gene symbol: PROM1
  hgvsc: ENST00000539194.1:c.1572A>C
  hgvsp: ENSP00000443620.1:p.Leu524Phe
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000438045
  ensembl transcript: ENST00000540805
  gene symbol: PROM1
  hgvsc: ENST00000540805.1:c.1572A>C
  hgvsp: ENSP00000438045.1:p.Leu524Phe
  variant of: http://identifiers.org/hgnc/9454
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4395
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2120
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10662
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34028
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4090
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1832
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3367
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 424
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1210
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1269
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2307
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 871
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 757
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Leu524Phe
num of homozygotes: 0
population: Other
population: African
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP

4-16002128-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16002128
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 16002128
    reference: chr 4
allele count: 1
allele frequency: 8.887624871129439e-6
allele num: 112516
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000415481
  ensembl transcript: ENST00000447510
  gene symbol: PROM1
  hgvsc: ENST00000447510.2:c.1569A>C
  hgvsp: ENSP00000415481.2:p.Glu523Asp
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000426809
  ensembl transcript: ENST00000510224
  gene symbol: PROM1
  hgvsc: ENST00000510224.1:c.1569A>C
  hgvsp: ENSP00000426809.1:p.Glu523Asp
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000438045
  ensembl transcript: ENST00000540805
  gene symbol: PROM1
  hgvsc: ENST00000540805.1:c.1569A>C
  hgvsp: ENSP00000438045.1:p.Glu523Asp
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000445526
  ensembl transcript: ENST00000543373
  gene symbol: PROM1
  hgvsc: ENST00000543373.1:c.1542A>C
  hgvsp: ENSP00000445526.1:p.Glu514Asp
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000426090
  ensembl transcript: ENST00000505450
  gene symbol: PROM1
  hgvsc: ENST00000505450.1:c.1542A>C
  hgvsp: ENSP00000426090.1:p.Glu514Asp
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000443620
  ensembl transcript: ENST00000539194
  gene symbol: PROM1
  hgvsc: ENST00000539194.1:c.1569A>C
  hgvsp: ENSP00000443620.1:p.Glu523Asp
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000427346
  ensembl transcript: ENST00000508167
  gene symbol: PROM1
  hgvsc: ENST00000508167.1:c.1542A>C
  hgvsp: ENSP00000427346.1:p.Glu514Asp
  variant of: http://identifiers.org/hgnc/9454
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4090
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10717
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4004
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1835
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34407
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2078
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 600
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40522
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3369
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 397
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1117
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 756
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1614
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 749
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Glu523Asp
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Latino
population: Other
population: South Asian
reference allele: T
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: VQSLOD

4-16002137-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16002137
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 16002137
    reference: chr 4
allele count: 2
allele frequency: 1.76831532598893e-5
allele num: 113102
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000443620
  ensembl transcript: ENST00000539194
  gene symbol: PROM1
  hgvsc: ENST00000539194.1:c.1560G>A
  hgvsp: ENST00000539194.1:c.1560G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000426090
  ensembl transcript: ENST00000505450
  gene symbol: PROM1
  hgvsc: ENST00000505450.1:c.1533G>A
  hgvsp: ENST00000505450.1:c.1533G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000445526
  ensembl transcript: ENST00000543373
  gene symbol: PROM1
  hgvsc: ENST00000543373.1:c.1533G>A
  hgvsp: ENST00000543373.1:c.1533G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000415481
  ensembl transcript: ENST00000447510
  gene symbol: PROM1
  hgvsc: ENST00000447510.2:c.1560G>A
  hgvsp: ENST00000447510.2:c.1560G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000438045
  ensembl transcript: ENST00000540805
  gene symbol: PROM1
  hgvsc: ENST00000540805.1:c.1560G>A
  hgvsp: ENST00000540805.1:c.1560G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000426809
  ensembl transcript: ENST00000510224
  gene symbol: PROM1
  hgvsc: ENST00000510224.1:c.1560G>A
  hgvsp: ENST00000510224.1:c.1560G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000427346
  ensembl transcript: ENST00000508167
  gene symbol: PROM1
  hgvsc: ENST00000508167.1:c.1533G>A
  hgvsp: ENST00000508167.1:c.1533G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9454
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11342
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1951
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34835
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3657
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3376
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 618
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1950
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3448
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4864
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 713
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 936
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2303
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 393
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1333
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Thr520Thr
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
population: Latino
population: East Asian
population: European (Finnish)
reference allele: C
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD

4-16002138-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16002138
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 16002138
    reference: chr 4
allele count: 6
allele frequency: 5.300072434323269e-5
allele num: 113206
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000438045
  ensembl transcript: ENST00000540805
  gene symbol: PROM1
  hgvsc: ENST00000540805.1:c.1559C>T
  hgvsp: ENSP00000438045.1:p.Thr520Met
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000426090
  ensembl transcript: ENST00000505450
  gene symbol: PROM1
  hgvsc: ENST00000505450.1:c.1532C>T
  hgvsp: ENSP00000426090.1:p.Thr511Met
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000426809
  ensembl transcript: ENST00000510224
  gene symbol: PROM1
  hgvsc: ENST00000510224.1:c.1559C>T
  hgvsp: ENSP00000426809.1:p.Thr520Met
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000445526
  ensembl transcript: ENST00000543373
  gene symbol: PROM1
  hgvsc: ENST00000543373.1:c.1532C>T
  hgvsp: ENSP00000445526.1:p.Thr511Met
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000443620
  ensembl transcript: ENST00000539194
  gene symbol: PROM1
  hgvsc: ENST00000539194.1:c.1559C>T
  hgvsp: ENSP00000443620.1:p.Thr520Met
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000415481
  ensembl transcript: ENST00000447510
  gene symbol: PROM1
  hgvsc: ENST00000447510.2:c.1559C>T
  hgvsp: ENSP00000415481.2:p.Thr520Met
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000427346
  ensembl transcript: ENST00000508167
  gene symbol: PROM1
  hgvsc: ENST00000508167.1:c.1532C>T
  hgvsp: ENSP00000427346.1:p.Thr511Met
  variant of: http://identifiers.org/hgnc/9454
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1926
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1976
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 34850
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3612
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3282
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11467
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 613
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 235
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 365
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 713
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 189
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 500
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1282
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4820
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Thr520Met
num of homozygotes: 0
population: African
population: East Asian
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum

4-16002140-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16002140
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 16002140
    reference: chr 4
allele count: 6
allele frequency: 5.291938613512083e-5
allele num: 113380
alternate allele: T
annotation: Annotation
  canonical: false
  clinical significance: not_provided
  consequence: stop_gained
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000427346
  ensembl transcript: ENST00000508167
  gene symbol: PROM1
  hgvsc: ENST00000508167.1:c.1530C>A
  hgvsp: ENSP00000427346.1:p.Tyr510Ter
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  clinical significance: not_provided
  consequence: stop_gained
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000438045
  ensembl transcript: ENST00000540805
  gene symbol: PROM1
  hgvsc: ENST00000540805.1:c.1557C>A
  hgvsp: ENSP00000438045.1:p.Tyr519Ter
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  clinical significance: not_provided
  consequence: stop_gained
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000443620
  ensembl transcript: ENST00000539194
  gene symbol: PROM1
  hgvsc: ENST00000539194.1:c.1557C>A
  hgvsp: ENSP00000443620.1:p.Tyr519Ter
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  clinical significance: not_provided
  consequence: stop_gained
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000415481
  ensembl transcript: ENST00000447510
  gene symbol: PROM1
  hgvsc: ENST00000447510.2:c.1557C>A
  hgvsp: ENSP00000415481.2:p.Tyr519Ter
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: true
  clinical significance: not_provided
  consequence: stop_gained
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000426809
  ensembl transcript: ENST00000510224
  gene symbol: PROM1
  hgvsc: ENST00000510224.1:c.1557C>A
  hgvsp: ENSP00000426809.1:p.Tyr519Ter
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  clinical significance: not_provided
  consequence: stop_gained
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000426090
  ensembl transcript: ENST00000505450
  gene symbol: PROM1
  hgvsc: ENST00000505450.1:c.1530C>A
  hgvsp: ENSP00000426090.1:p.Tyr510Ter
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  clinical significance: not_provided
  consequence: stop_gained
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000445526
  ensembl transcript: ENST00000543373
  gene symbol: PROM1
  hgvsc: ENST00000543373.1:c.1530C>A
  hgvsp: ENSP00000445526.1:p.Tyr510Ter
  variant of: http://identifiers.org/hgnc/9454
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3132
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1839
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11570
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35073
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 609
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1946
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3560
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4782
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2305
  bin: 9.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 665
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3531
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 774
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 409
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Tyr519Ter
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
population: Other
population: African
reference allele: G
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: DP

4-16002141-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16002141
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 16002141
    reference: chr 4
allele count: 3
allele frequency: 2.644196869270907e-5
allele num: 113456
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000445526
  ensembl transcript: ENST00000543373
  gene symbol: PROM1
  hgvsc: ENST00000543373.1:c.1529A>G
  hgvsp: ENSP00000445526.1:p.Tyr510Cys
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000426809
  ensembl transcript: ENST00000510224
  gene symbol: PROM1
  hgvsc: ENST00000510224.1:c.1556A>G
  hgvsp: ENSP00000426809.1:p.Tyr519Cys
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000426090
  ensembl transcript: ENST00000505450
  gene symbol: PROM1
  hgvsc: ENST00000505450.1:c.1529A>G
  hgvsp: ENSP00000426090.1:p.Tyr510Cys
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000415481
  ensembl transcript: ENST00000447510
  gene symbol: PROM1
  hgvsc: ENST00000447510.2:c.1556A>G
  hgvsp: ENSP00000415481.2:p.Tyr519Cys
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000438045
  ensembl transcript: ENST00000540805
  gene symbol: PROM1
  hgvsc: ENST00000540805.1:c.1556A>G
  hgvsp: ENSP00000438045.1:p.Tyr519Cys
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000443620
  ensembl transcript: ENST00000539194
  gene symbol: PROM1
  hgvsc: ENST00000539194.1:c.1556A>G
  hgvsp: ENSP00000443620.1:p.Tyr519Cys
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000427346
  ensembl transcript: ENST00000508167
  gene symbol: PROM1
  hgvsc: ENST00000508167.1:c.1529A>G
  hgvsp: ENSP00000427346.1:p.Tyr510Cys
  variant of: http://identifiers.org/hgnc/9454
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3090
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 604
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1932
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 35158
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1818
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3544
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11589
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 634
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 190
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 785
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4753
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42466
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 784
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1143
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 405
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Tyr519Cys
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
population: Latino
population: East Asian
population: South Asian
reference allele: T
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum

http://identifiers.org/exac.variant/4-16002142-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16002142
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 16002142
    reference: chr 4
allele count: 1
allele frequency: 8.810262193402876e-6
allele num: 113504
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000426090
  ensembl transcript: ENST00000505450
  gene symbol: PROM1
  hgvsc: ENST00000505450.1:c.1528T>G
  hgvsp: ENSP00000426090.1:p.Tyr510Asp
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000445526
  ensembl transcript: ENST00000543373
  gene symbol: PROM1
  hgvsc: ENST00000543373.1:c.1528T>G
  hgvsp: ENSP00000445526.1:p.Tyr510Asp
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000426809
  ensembl transcript: ENST00000510224
  gene symbol: PROM1
  hgvsc: ENST00000510224.1:c.1555T>G
  hgvsp: ENSP00000426809.1:p.Tyr519Asp
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000415481
  ensembl transcript: ENST00000447510
  gene symbol: PROM1
  hgvsc: ENST00000447510.2:c.1555T>G
  hgvsp: ENSP00000415481.2:p.Tyr519Asp
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000443620
  ensembl transcript: ENST00000539194
  gene symbol: PROM1
  hgvsc: ENST00000539194.1:c.1555T>G
  hgvsp: ENSP00000443620.1:p.Tyr519Asp
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000438045
  ensembl transcript: ENST00000540805
  gene symbol: PROM1
  hgvsc: ENST00000540805.1:c.1555T>G
  hgvsp: ENSP00000438045.1:p.Tyr519Asp
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000427346
  ensembl transcript: ENST00000508167
  gene symbol: PROM1
  hgvsc: ENST00000508167.1:c.1528T>G
  hgvsp: ENSP00000427346.1:p.Tyr510Asp
  variant of: http://identifiers.org/hgnc/9454
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 3021
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35223
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1928
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1805
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3515
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11637
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 784
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 678
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4733
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 237
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1095
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 322
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 672
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 758
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Tyr519Asp
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
population: European (Finnish)
population: South Asian
reference allele: A
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/4-16002163-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16002163
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 16002163
    reference: chr 4
allele count: 1
allele frequency: 8.846426043878273e-6
allele num: 113040
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000438045
  ensembl transcript: ENST00000540805
  gene symbol: PROM1
  hgvsc: ENST00000540805.1:c.1534G>T
  hgvsp: ENSP00000438045.1:p.Glu512Ter
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000443620
  ensembl transcript: ENST00000539194
  gene symbol: PROM1
  hgvsc: ENST00000539194.1:c.1534G>T
  hgvsp: ENSP00000443620.1:p.Glu512Ter
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000426809
  ensembl transcript: ENST00000510224
  gene symbol: PROM1
  hgvsc: ENST00000510224.1:c.1534G>T
  hgvsp: ENSP00000426809.1:p.Glu512Ter
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000445526
  ensembl transcript: ENST00000543373
  gene symbol: PROM1
  hgvsc: ENST00000543373.1:c.1507G>T
  hgvsp: ENSP00000445526.1:p.Glu503Ter
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000427346
  ensembl transcript: ENST00000508167
  gene symbol: PROM1
  hgvsc: ENST00000508167.1:c.1507G>T
  hgvsp: ENSP00000427346.1:p.Glu503Ter
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000426090
  ensembl transcript: ENST00000505450
  gene symbol: PROM1
  hgvsc: ENST00000505450.1:c.1507G>T
  hgvsp: ENSP00000426090.1:p.Glu503Ter
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000415481
  ensembl transcript: ENST00000447510
  gene symbol: PROM1
  hgvsc: ENST00000447510.2:c.1534G>T
  hgvsp: ENSP00000415481.2:p.Glu512Ter
  variant of: http://identifiers.org/hgnc/9454
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 34092
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2049
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12403
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3713
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2871
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 616
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1982
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 407
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 925
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 183
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 380
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5255
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3550
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Glu512Ter
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
reference allele: C
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS

4-16002164-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16002164
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 16002164
    reference: chr 4
allele count: 4
allele frequency: 3.541891724369986e-5
allele num: 112934
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000426090
  ensembl transcript: ENST00000505450
  gene symbol: PROM1
  hgvsc: ENST00000505450.1:c.1506G>A
  hgvsp: ENST00000505450.1:c.1506G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000443620
  ensembl transcript: ENST00000539194
  gene symbol: PROM1
  hgvsc: ENST00000539194.1:c.1533G>A
  hgvsp: ENST00000539194.1:c.1533G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000415481
  ensembl transcript: ENST00000447510
  gene symbol: PROM1
  hgvsc: ENST00000447510.2:c.1533G>A
  hgvsp: ENST00000447510.2:c.1533G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000438045
  ensembl transcript: ENST00000540805
  gene symbol: PROM1
  hgvsc: ENST00000540805.1:c.1533G>A
  hgvsp: ENST00000540805.1:c.1533G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000426809
  ensembl transcript: ENST00000510224
  gene symbol: PROM1
  hgvsc: ENST00000510224.1:c.1533G>A
  hgvsp: ENST00000510224.1:c.1533G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000445526
  ensembl transcript: ENST00000543373
  gene symbol: PROM1
  hgvsc: ENST00000543373.1:c.1506G>A
  hgvsp: ENST00000543373.1:c.1506G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000427346
  ensembl transcript: ENST00000508167
  gene symbol: PROM1
  hgvsc: ENST00000508167.1:c.1506G>A
  hgvsp: ENST00000508167.1:c.1506G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9454
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2005
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 33886
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2055
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2916
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3760
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 611
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12485
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 755
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 236
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 950
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 182
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2301
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 814
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 415
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Val511Val
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: C
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum

4-16002166-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16002166
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 16002166
    reference: chr 4
allele count: 1
allele frequency: 8.858337467224152e-6
allele num: 112888
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000443620
  ensembl transcript: ENST00000539194
  gene symbol: PROM1
  hgvsc: ENST00000539194.1:c.1531G>A
  hgvsp: ENSP00000443620.1:p.Val511Met
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000445526
  ensembl transcript: ENST00000543373
  gene symbol: PROM1
  hgvsc: ENST00000543373.1:c.1504G>A
  hgvsp: ENSP00000445526.1:p.Val502Met
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000438045
  ensembl transcript: ENST00000540805
  gene symbol: PROM1
  hgvsc: ENST00000540805.1:c.1531G>A
  hgvsp: ENSP00000438045.1:p.Val511Met
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000415481
  ensembl transcript: ENST00000447510
  gene symbol: PROM1
  hgvsc: ENST00000447510.2:c.1531G>A
  hgvsp: ENSP00000415481.2:p.Val511Met
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000427346
  ensembl transcript: ENST00000508167
  gene symbol: PROM1
  hgvsc: ENST00000508167.1:c.1504G>A
  hgvsp: ENSP00000427346.1:p.Val502Met
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000426809
  ensembl transcript: ENST00000510224
  gene symbol: PROM1
  hgvsc: ENST00000510224.1:c.1531G>A
  hgvsp: ENSP00000426809.1:p.Val511Met
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000426090
  ensembl transcript: ENST00000505450
  gene symbol: PROM1
  hgvsc: ENST00000505450.1:c.1504G>A
  hgvsp: ENSP00000426090.1:p.Val502Met
  variant of: http://identifiers.org/hgnc/9454
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12621
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 614
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 33824
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3792
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1977
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1983
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2911
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 906
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1245
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 179
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 706
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3532
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 795
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Val511Met
num of homozygotes: 0
population: Other
population: East Asian
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: MQ

4-16002172-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16002172
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 16002172
    reference: chr 4
allele count: 3
allele frequency: 2.665718855518038e-5
allele num: 112540
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000415481
  ensembl transcript: ENST00000447510
  gene symbol: PROM1
  hgvsc: ENST00000447510.2:c.1525G>A
  hgvsp: ENSP00000415481.2:p.Ala509Thr
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000427346
  ensembl transcript: ENST00000508167
  gene symbol: PROM1
  hgvsc: ENST00000508167.1:c.1498G>A
  hgvsp: ENSP00000427346.1:p.Ala500Thr
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000445526
  ensembl transcript: ENST00000543373
  gene symbol: PROM1
  hgvsc: ENST00000543373.1:c.1498G>A
  hgvsp: ENSP00000445526.1:p.Ala500Thr
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000426090
  ensembl transcript: ENST00000505450
  gene symbol: PROM1
  hgvsc: ENST00000505450.1:c.1498G>A
  hgvsp: ENSP00000426090.1:p.Ala500Thr
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000426809
  ensembl transcript: ENST00000510224
  gene symbol: PROM1
  hgvsc: ENST00000510224.1:c.1525G>A
  hgvsp: ENSP00000426809.1:p.Ala509Thr
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000443620
  ensembl transcript: ENST00000539194
  gene symbol: PROM1
  hgvsc: ENST00000539194.1:c.1525G>A
  hgvsp: ENSP00000443620.1:p.Ala509Thr
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000438045
  ensembl transcript: ENST00000540805
  gene symbol: PROM1
  hgvsc: ENST00000540805.1:c.1525G>A
  hgvsp: ENSP00000438045.1:p.Ala509Thr
  variant of: http://identifiers.org/hgnc/9454
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12770
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3955
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2007
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2992
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1736
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 615
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33643
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 629
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 597
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5756
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2300
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 379
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 953
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 737
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Ala509Thr
num of homozygotes: 0
population: African
population: European (Finnish)
population: South Asian
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum

4-16002174-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16002174
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 16002174
    reference: chr 4
allele count: 1
allele frequency: 8.893315783856854e-6
allele num: 112444
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000426090
  ensembl transcript: ENST00000505450
  gene symbol: PROM1
  hgvsc: ENST00000505450.1:c.1496G>A
  hgvsp: ENSP00000426090.1:p.Gly499Asp
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000443620
  ensembl transcript: ENST00000539194
  gene symbol: PROM1
  hgvsc: ENST00000539194.1:c.1523G>A
  hgvsp: ENSP00000443620.1:p.Gly508Asp
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000415481
  ensembl transcript: ENST00000447510
  gene symbol: PROM1
  hgvsc: ENST00000447510.2:c.1523G>A
  hgvsp: ENSP00000415481.2:p.Gly508Asp
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000426809
  ensembl transcript: ENST00000510224
  gene symbol: PROM1
  hgvsc: ENST00000510224.1:c.1523G>A
  hgvsp: ENSP00000426809.1:p.Gly508Asp
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000438045
  ensembl transcript: ENST00000540805
  gene symbol: PROM1
  hgvsc: ENST00000540805.1:c.1523G>A
  hgvsp: ENSP00000438045.1:p.Gly508Asp
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000427346
  ensembl transcript: ENST00000508167
  gene symbol: PROM1
  hgvsc: ENST00000508167.1:c.1496G>A
  hgvsp: ENSP00000427346.1:p.Gly499Asp
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000445526
  ensembl transcript: ENST00000543373
  gene symbol: PROM1
  hgvsc: ENST00000543373.1:c.1496G>A
  hgvsp: ENSP00000445526.1:p.Gly499Asp
  variant of: http://identifiers.org/hgnc/9454
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1632
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3989
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 614
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3007
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33646
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12835
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1991
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 577
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3532
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 665
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 771
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 730
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2298
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Gly508Asp
num of homozygotes: 0
population: African
population: European (Finnish)
population: Other
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum

4-16002199-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16002199
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 16002199
    reference: chr 4
allele count: 1
allele frequency: 9.269558769002595e-6
allele num: 107880
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000426809
  ensembl transcript: ENST00000510224
  gene symbol: PROM1
  hgvsc: ENST00000510224.1:c.1498A>G
  hgvsp: ENSP00000426809.1:p.Ile500Val
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000415481
  ensembl transcript: ENST00000447510
  gene symbol: PROM1
  hgvsc: ENST00000447510.2:c.1498A>G
  hgvsp: ENSP00000415481.2:p.Ile500Val
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000445526
  ensembl transcript: ENST00000543373
  gene symbol: PROM1
  hgvsc: ENST00000543373.1:c.1471A>G
  hgvsp: ENSP00000445526.1:p.Ile491Val
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000426090
  ensembl transcript: ENST00000505450
  gene symbol: PROM1
  hgvsc: ENST00000505450.1:c.1471A>G
  hgvsp: ENSP00000426090.1:p.Ile491Val
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000427346
  ensembl transcript: ENST00000508167
  gene symbol: PROM1
  hgvsc: ENST00000508167.1:c.1471A>G
  hgvsp: ENSP00000427346.1:p.Ile491Val
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000443620
  ensembl transcript: ENST00000539194
  gene symbol: PROM1
  hgvsc: ENST00000539194.1:c.1498A>G
  hgvsp: ENSP00000443620.1:p.Ile500Val
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000438045
  ensembl transcript: ENST00000540805
  gene symbol: PROM1
  hgvsc: ENST00000540805.1:c.1498A>G
  hgvsp: ENSP00000438045.1:p.Ile500Val
  variant of: http://identifiers.org/hgnc/9454
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1834
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6149
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 598
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1906
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5230
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12432
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29438
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 660
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1005
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 178
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1069
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9617
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 254
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 374
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Ile500Val
num of homozygotes: 0
population: South Asian
population: East Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: QD

4-16002200-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16002200
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 16002200
    reference: chr 4
allele count: 366
allele frequency: 3.393916913946588e-3
allele num: 107840
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000426809
  ensembl transcript: ENST00000510224
  gene symbol: PROM1
  hgvsc: ENST00000510224.1:c.1497C>T
  hgvsp: ENST00000510224.1:c.1497C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000426090
  ensembl transcript: ENST00000505450
  gene symbol: PROM1
  hgvsc: ENST00000505450.1:c.1470C>T
  hgvsp: ENST00000505450.1:c.1470C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000443620
  ensembl transcript: ENST00000539194
  gene symbol: PROM1
  hgvsc: ENST00000539194.1:c.1497C>T
  hgvsp: ENST00000539194.1:c.1497C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000438045
  ensembl transcript: ENST00000540805
  gene symbol: PROM1
  hgvsc: ENST00000540805.1:c.1497C>T
  hgvsp: ENST00000540805.1:c.1497C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000445526
  ensembl transcript: ENST00000543373
  gene symbol: PROM1
  hgvsc: ENST00000543373.1:c.1470C>T
  hgvsp: ENST00000543373.1:c.1470C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000415481
  ensembl transcript: ENST00000447510
  gene symbol: PROM1
  hgvsc: ENST00000447510.2:c.1497C>T
  hgvsp: ENST00000447510.2:c.1497C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000427346
  ensembl transcript: ENST00000508167
  gene symbol: PROM1
  hgvsc: ENST00000508167.1:c.1470C>T
  hgvsp: ENST00000508167.1:c.1470C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9454
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 5.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 29267
  bin: 2.25e1
  variant carriers: 57
genotype depth: GenotypeDepth
  all individuals: 12479
  bin: 2.75e1
  variant carriers: 78
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 3.75e1
  variant carriers: 36
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 6.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1799
  bin: 1.75e1
  variant carriers: 47
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 4.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 6153
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5236
  bin: 1.25e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 9.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 6.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1967
  bin: 3.25e1
  variant carriers: 50
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 4.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 5.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1052
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 568
  bin: 7.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 3118
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 255
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 331
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 173
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 652
  bin: 4.75e1
  variant carriers: 1
hgvs: p.Ile499Ile
num of homozygotes: 2
population: South Asian
population: Other
population: East Asian
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
reference allele: G
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD

4-16002200-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16002200
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 16002200
    reference: chr 4
allele count: 1
allele frequency: 9.272997032640949e-6
allele num: 107840
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000426809
  ensembl transcript: ENST00000510224
  gene symbol: PROM1
  hgvsc: ENST00000510224.1:c.1497C>A
  hgvsp: ENST00000510224.1:c.1497C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000445526
  ensembl transcript: ENST00000543373
  gene symbol: PROM1
  hgvsc: ENST00000543373.1:c.1470C>A
  hgvsp: ENST00000543373.1:c.1470C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000443620
  ensembl transcript: ENST00000539194
  gene symbol: PROM1
  hgvsc: ENST00000539194.1:c.1497C>A
  hgvsp: ENST00000539194.1:c.1497C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000427346
  ensembl transcript: ENST00000508167
  gene symbol: PROM1
  hgvsc: ENST00000508167.1:c.1470C>A
  hgvsp: ENST00000508167.1:c.1470C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000415481
  ensembl transcript: ENST00000447510
  gene symbol: PROM1
  hgvsc: ENST00000447510.2:c.1497C>A
  hgvsp: ENST00000447510.2:c.1497C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000438045
  ensembl transcript: ENST00000540805
  gene symbol: PROM1
  hgvsc: ENST00000540805.1:c.1497C>A
  hgvsp: ENST00000540805.1:c.1497C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9454
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000007062
  ensembl protein: ENSP00000426090
  ensembl transcript: ENST00000505450
  gene symbol: PROM1
  hgvsc: ENST00000505450.1:c.1470C>A
  hgvsp: ENST00000505450.1:c.1470C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9454
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1799
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6153
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1967
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12479
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5236
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29267
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 227
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Ile499Ile
num of homozygotes: 0
reference allele: G

GenotypeQuality
all individuals: 3518
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26213
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 20
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5435
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11930
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3969
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2575
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 5.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16442
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8614
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.116071428571429e-3
allele num: 896
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9794
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.5004500450045e-5
allele num: 66660
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.24e0

MQRankSum
type: SiteQuality
SIO_000300: -9.62e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.0e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.1e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.391e1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.03e-1

DP
type: SiteQuality
SIO_000300: 2.746386e6

MQ
type: SiteQuality
SIO_000300: 5.947e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.903e0

GenotypeQuality
all individuals: 34
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5417
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2574
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 74
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3518
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11779
bin: 6.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66662
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.021450459652707e-4
allele num: 9790
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8614
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16432
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.8e-3

QD
type: SiteQuality
SIO_000300: 1.316e1

FS
type: SiteQuality
SIO_000300: 3.664e0

DP
type: SiteQuality
SIO_000300: 2.744226e6

MQ
type: SiteQuality
SIO_000300: 5.985e1

MQRankSum
type: SiteQuality
SIO_000300: -2.616e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.86e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.563e0

VQSLOD
type: SiteQuality
SIO_000300: -1.895e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.23e-1

GenotypeQuality
all individuals: 467
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 265
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3516
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26205
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 108
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4113
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2539
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66590
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16404
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8594
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.021450459652707e-4
allele num: 9790
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.9e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -6.99e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -7.883e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.6e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 2.08e-1

DP
type: SiteQuality
SIO_000300: 2.725635e6

MQRankSum
type: SiteQuality
SIO_000300: -4.35e-1

QD
type: SiteQuality
SIO_000300: 6.9e0

GenotypeQuality
all individuals: 9602
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4108
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 94
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 326
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26204
bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3515
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3945
bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16400
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66584
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8588
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.021450459652707e-4
allele num: 9790
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.6e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.2e-1

DP
type: SiteQuality
SIO_000300: 2.720711e6

QD
type: SiteQuality
SIO_000300: 6.7e0

MQRankSum
type: SiteQuality
SIO_000300: 3.47e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.659999999999999e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.28e-1

VQSLOD
type: SiteQuality
SIO_000300: -8.961e-1

GenotypeQuality
all individuals: 629
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3511
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 369
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3942
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26201
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 32
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 819
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4862
bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16386
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.502494140272853e-5
allele num: 66556
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8586
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9786
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.89e0

DP
type: SiteQuality
SIO_000300: 2.713883e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.533e0

VQSLOD
type: SiteQuality
SIO_000300: 6.01e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.95e-1

FS
type: SiteQuality
SIO_000300: 3.61e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.1e-3

MQRankSum
type: SiteQuality
SIO_000300: 2.13e-1

MQ
type: SiteQuality
SIO_000300: 5.963e1

QD
type: SiteQuality
SIO_000300: 1.669e1

GenotypeQuality
all individuals: 2419
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3510
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2111
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4059
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1074
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 702
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3921
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 390
bin: 2.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16340
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9788
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8568
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11548
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.006614552014432e-5
allele num: 66520
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.2e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 1.68e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.47e0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.343e0

QD
type: SiteQuality
SIO_000300: 1.24e1

MQRankSum
type: SiteQuality
SIO_000300: 6.5e-1

DP
type: SiteQuality
SIO_000300: 2.703435e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.21e-1

GenotypeQuality
all individuals: 804
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 75
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5085
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1092
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 852
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2353
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3514
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2104
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3911
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.505162708088744e-5
allele num: 66438
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16326
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8522
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9772
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11540
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-3

MQRankSum
type: SiteQuality
SIO_000300: -1.48e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.77e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.53e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.221e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.62e-1

DP
type: SiteQuality
SIO_000300: 2.695714e6

MQ
type: SiteQuality
SIO_000300: 5.959e1

QD
type: SiteQuality
SIO_000300: 1.29e1

GenotypeQuality
all individuals: 2368
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 122
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 529
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1047
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4122
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 277
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 408
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 676
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1860
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4017
bin: 2.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9678
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5086
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 3.894080996884735e-4
allele num: 2568
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 476
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3492
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 24588
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3534
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.52e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 2.78e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.69e-2

VQSLOD
type: SiteQuality
SIO_000300: 2.27e0

DP
type: SiteQuality
SIO_000300: 8.86529e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.78e-1

QD
type: SiteQuality
SIO_000300: 1.409e1

GenotypeQuality
all individuals: 407
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4240
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 938
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2381
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4719
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 242
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4731
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3018
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 275
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5122
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 4.043671653861707e-5
allele num: 24730
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 474
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9704
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3514
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3562
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2592
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -3.58e-1

DP
type: SiteQuality
SIO_000300: 8.98631e5

VQSLOD
type: SiteQuality
SIO_000300: -2.083e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.58e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 2.927e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.45e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.57e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 2.49e0

QD
type: SiteQuality
SIO_000300: 1.777e1

GenotypeQuality
all individuals: 676
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2350
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 683
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variant carriers: 0

GenotypeQuality
all individuals: 53
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GenotypeQuality
all individuals: 4757
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 168
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 9736
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5138
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 476
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2644
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 3596
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 3568
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 24988
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
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MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -1.12e0

DP
type: SiteQuality
SIO_000300: 9.08295e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.1e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.589e0

MQRankSum
type: SiteQuality
SIO_000300: 5.72e-1

QD
type: SiteQuality
SIO_000300: 1.978e1

FS
type: SiteQuality
SIO_000300: 3.815e0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.962593120938342e-5
allele num: 25236
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 9780
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 3614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 480
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 3604
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 5162
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 2688
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 4.67e0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 6.889999999999999e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.44e-1

ClippingRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 9.13718e5

QD
type: SiteQuality
SIO_000300: 1.416e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 2

European (Non-Finnish)
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allele count: 2
allele frequency: 7.765180928715639e-5
allele num: 25756
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 3658
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 482
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3716
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 2780
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 9870
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 5256
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.96e-1

InbreedingCoeff
type: SiteQuality
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MQRankSum
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QD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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DP
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: -1.43e-1

FS
type: SiteQuality
SIO_000300: 3.804e0

BaseQRankSum
type: SiteQuality
SIO_000300: 6.48e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3692
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3784
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2868
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 484
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.838182236892607e-5
allele num: 26054
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.84e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.13e-2

QD
type: SiteQuality
SIO_000300: 1.002e1

VQSLOD
type: SiteQuality
SIO_000300: 2.39e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.72e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 4.62e-1

DP
type: SiteQuality
SIO_000300: 9.56314e5

BaseQRankSum
type: SiteQuality
SIO_000300: -3.123e0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3724
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5380
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 484
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2954
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3840
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 26474
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9968
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 8.369999999999999e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.23e0

VQSLOD
type: SiteQuality
SIO_000300: 2.86e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.58e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.58e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.23e0

DP
type: SiteQuality
SIO_000300: 9.67929e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.05e-2

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1999
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 695
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 2

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3898
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10218
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3278
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 7.02000702000702e-5
allele num: 28490
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5690
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4144
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 500
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.31e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.072e1

MQRankSum
type: SiteQuality
SIO_000300: -3.8e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.7e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.55e0

VQSLOD
type: SiteQuality
SIO_000300: 1.28e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.5e-1

DP
type: SiteQuality
SIO_000300: 1.003483e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3616
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 512
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5948
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 30272
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4030
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 2.264492753623188e-4
allele num: 4416
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.81e0

FS
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.922e1

VQSLOD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 5.82e-1

InbreedingCoeff
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: -2.14e-1

BaseQRankSum
type: SiteQuality
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QD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.040806e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 35160
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4428
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4696
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.503759398496241e-4
allele num: 6650
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 546
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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South Asian
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allele count: 0
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ReadPosRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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FS
type: SiteQuality
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VQSLOD
type: SiteQuality
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ClippingRankSum
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BaseQRankSum
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MQ
type: SiteQuality
SIO_000300: 5.923e1

MQRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.118556e6

QD
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5456
num of homozygotes: 0

Other
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num of homozygotes: 0

South Asian
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 8044
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 2.058206067591487e-5
allele num: 48586
num of homozygotes: 0

East Asian
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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VQSLOD
type: SiteQuality
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ClippingRankSum
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BaseQRankSum
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FS
type: SiteQuality
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QD
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MQRankSum
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ReadPosRankSum
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MQ
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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DP
type: SiteQuality
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GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

African
type: Population
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allele frequency: 0.0e0
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Other
type: Population
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12546
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5456
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.243162605668821e-4
allele num: 8044
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 48586
num of homozygotes: 0

VQSLOD
type: SiteQuality
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ReadPosRankSum
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BaseQRankSum
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MQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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DP
type: SiteQuality
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FS
type: SiteQuality
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QD
type: SiteQuality
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ClippingRankSum
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MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
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bin: 8.75e1
variant carriers: 1

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 688
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 561
bin: 3.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9034
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5778
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8400
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 750
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7124
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13162
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 1.13498789346247e-4
allele num: 52864
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.79e0

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 1.479e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.5e-3

DP
type: SiteQuality
SIO_000300: 1.382058e6

VQSLOD
type: SiteQuality
SIO_000300: 1.23e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.28e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.82e-1

QD
type: SiteQuality
SIO_000300: 1.262e1

GenotypeQuality
all individuals: 36179
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13478
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.825417107809134e-5
allele num: 54782
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7376
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5898
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9470
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8574
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 772
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.79e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.3e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -1.309e0

VQSLOD
type: SiteQuality
SIO_000300: 6.68e-1

DP
type: SiteQuality
SIO_000300: 1.412854e6

MQ
type: SiteQuality
SIO_000300: 5.941e1

MQRankSum
type: SiteQuality
SIO_000300: 2.94e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.98e0

QD
type: SiteQuality
SIO_000300: 1.252e1

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1062
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variant carriers: 0

GenotypeQuality
all individuals: 284
bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 772
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5898
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7376
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.166316771635176e-4
allele num: 8574
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 54782
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9470
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13478
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.94e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.309e0

VQSLOD
type: SiteQuality
SIO_000300: 6.68e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.98e0

QD
type: SiteQuality
SIO_000300: 1.252e1

MQ
type: SiteQuality
SIO_000300: 5.941e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.3e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 2.79e0

DP
type: SiteQuality
SIO_000300: 1.412854e6

GenotypeQuality
all individuals: 35
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 824
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 407
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 284
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 55076
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.349163518618457e-4
allele num: 7412
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 778
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13534
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9524
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8600
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5922
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.87e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.44e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.1e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -3.87e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.03e0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.64e0

DP
type: SiteQuality
SIO_000300: 1.417709e6

QD
type: SiteQuality
SIO_000300: 8.869999999999999e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 405
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3045
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9196
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 73
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1068
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variant carriers: 0

GenotypeQuality
all individuals: 702
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3016
bin: 9.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6034
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9770
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7600
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 56556
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13724
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 784
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.144164759725401e-4
allele num: 8740
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 7.89e-1

DP
type: SiteQuality
SIO_000300: 1.440753e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.72e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.71e0

MQRankSum
type: SiteQuality
SIO_000300: 1.86e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.1e-3

QD
type: SiteQuality
SIO_000300: 1.195e1

FS
type: SiteQuality
SIO_000300: 1.83e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.8e-1

GenotypeQuality
all individuals: 3102
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 750
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 859
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variant carriers: 0

GenotypeQuality
all individuals: 39020
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 464
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variant carriers: 1

GenotypeQuality
all individuals: 1074
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6116
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 57576
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 790
num of homozygotes: 0

South Asian
type: Population
allele count: 6
allele frequency: 4.324012683770539e-4
allele num: 13876
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8824
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9924
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7704
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.46e-1

FS
type: SiteQuality
SIO_000300: 4.872e0

QD
type: SiteQuality
SIO_000300: 1.107e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.1e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.616e0

MQ
type: SiteQuality
SIO_000300: 5.981e1

VQSLOD
type: SiteQuality
SIO_000300: 9.7e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.5e-2

MQRankSum
type: SiteQuality
SIO_000300: 4.28e-1

DP
type: SiteQuality
SIO_000300: 1.457014e6

GenotypeQuality
all individuals: 711
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 50
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 355
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GenotypeQuality
all individuals: 39818
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10084
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8914
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 800
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 58428
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7770
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.422879908935686e-4
allele num: 14056
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6174
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 9.370000000000001e-1

QD
type: SiteQuality
SIO_000300: 1.025e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.929999999999999e-1

DP
type: SiteQuality
SIO_000300: 1.467908e6

MQRankSum
type: SiteQuality
SIO_000300: 1.22e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-3

FS
type: SiteQuality
SIO_000300: 2.558e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.03e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.38e-1

GenotypeQuality
all individuals: 8282
bin: 2.25e1
variant carriers: 1

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
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GenotypeQuality
all individuals: 711
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6174
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8914
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 800
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7770
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.711508181009105e-5
allele num: 58428
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10084
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14056
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 9.370000000000001e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.929999999999999e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.22e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.38e-1

FS
type: SiteQuality
SIO_000300: 2.558e0

DP
type: SiteQuality
SIO_000300: 1.467908e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.03e0

QD
type: SiteQuality
SIO_000300: 1.025e1

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38883
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 407
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8894
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7754
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 58278
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10046
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6182
num of homozygotes: 0

Other
type: Population
allele count: 2
allele frequency: 2.481389578163772e-3
allele num: 806
num of homozygotes: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14036
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 2.582e1

VQSLOD
type: SiteQuality
SIO_000300: -1.219e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.800000000000001e-3

DP
type: SiteQuality
SIO_000300: 1.463599e6

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 406
bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
all individuals: 27
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variant carriers: 0

GenotypeQuality
all individuals: 3141
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GenotypeQuality
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bin: 9.75e1
variant carriers: 26

GenotypeQuality
all individuals: 287
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 702
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 385
bin: 4.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6152
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13970
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 15
allele frequency: 2.588170336117054e-4
allele num: 57956
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7734
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8876
num of homozygotes: 0

Latino
type: Population
allele count: 11
allele frequency: 1.103531300160514e-3
allele num: 9968
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 804
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.453767e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 3.5e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.16e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.62e-1

MQRankSum
type: SiteQuality
SIO_000300: -8.699999999999999e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.5e-3

QD
type: SiteQuality
SIO_000300: 1.212e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.85e-1

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6020
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13740
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7526
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8736
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9476
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.777524974225888e-5
allele num: 56258
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 792
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 8.169999999999999e-1

DP
type: SiteQuality
SIO_000300: 1.410715e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.5e-3

VQSLOD
type: SiteQuality
SIO_000300: -1.501e0

QD
type: SiteQuality
SIO_000300: 5.43e0

MQ
type: SiteQuality
SIO_000300: 5.707e1

MQRankSum
type: SiteQuality
SIO_000300: -2.71e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.71e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.33e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 13708
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 792
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.780373166215639e-5
allele num: 56168
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 9436
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7510
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8728
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6020
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 7.7e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 2.31e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.6e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.003e0

VQSLOD
type: SiteQuality
SIO_000300: -2.895e0

FS
type: SiteQuality
SIO_000300: 6.421e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.77e0

QD
type: SiteQuality
SIO_000300: 3.04e0

DP
type: SiteQuality
SIO_000300: 1.407679e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 1
allele frequency: 1.076426264800861e-4
allele num: 9290
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13626
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 55506
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 790
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7416
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5994
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8670
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.065e0

FS
type: SiteQuality
SIO_000300: 3.862e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.441e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.37e0

DP
type: SiteQuality
SIO_000300: 1.392881e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.65e-1

MQRankSum
type: SiteQuality
SIO_000300: -6.26e-1

MQ
type: SiteQuality
SIO_000300: 5.878e1

QD
type: SiteQuality
SIO_000300: 2.38e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.9e-3

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 708
bin: 3.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.825217200846901e-5
allele num: 54788
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7312
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 784
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9088
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5958
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13560
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8598
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.33e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.4e-2

DP
type: SiteQuality
SIO_000300: 1.373868e6

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.906e1

VQSLOD
type: SiteQuality
SIO_000300: -1.725e0

QD
type: SiteQuality
SIO_000300: 5.45e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.45e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.272e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

GenotypeQuality
all individuals: 2981
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 280
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 683
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 54072
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5924
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8938
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 778
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.174536058256989e-4
allele num: 8514
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13484
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7232
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.056e0

MQRankSum
type: SiteQuality
SIO_000300: -1.857e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

VQSLOD
type: SiteQuality
SIO_000300: -1.434e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.98e0

FS
type: SiteQuality
SIO_000300: 4.75e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.878e0

DP
type: SiteQuality
SIO_000300: 1.357437e6

QD
type: SiteQuality
SIO_000300: 1.119e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 772
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5888
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 53646
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.437156031533541e-5
allele num: 13446
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8832
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8474
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7192
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.348393e6

MQRankSum
type: SiteQuality
SIO_000300: -1.0e0

FS
type: SiteQuality
SIO_000300: 1.565e0

VQSLOD
type: SiteQuality
SIO_000300: -8.58e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 3.03e-1

QD
type: SiteQuality
SIO_000300: 8.73e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.965e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.752e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.39e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 7154
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8736
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.879063474764177e-5
allele num: 53218
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13384
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5846
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 770
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.092e0

MQ
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

VQSLOD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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FS
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 4.37e-1

QD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.338804e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 13178
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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Latino
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allele count: 0
allele frequency: 0.0e0
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African
type: Population
allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.947116320729e-5
allele num: 51358
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5668
num of homozygotes: 0

VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.873e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.259e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.07e0

FS
type: SiteQuality
SIO_000300: 1.299e0

MQRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.283108e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 8114
num of homozygotes: 0

East Asian
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 740
num of homozygotes: 0

European (Non-Finnish)
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allele count: 7
allele frequency: 1.378224059854302e-4
allele num: 50790
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5626
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.7e-3

ClippingRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.945e1

ReadPosRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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FS
type: SiteQuality
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QD
type: SiteQuality
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DP
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: -7.29e-1

GenotypeQuality
all individuals: 17372
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 130
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 162
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1795
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 715
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 314
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 407
bin: 9.25e1
variant carriers: 2

GenotypeQuality
all individuals: 2321
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 667
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3052
bin: 9.75e1
variant carriers: 62

GenotypeQuality
all individuals: 277
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.068166776968895e-5
allele num: 48352
num of homozygotes: 0

African
type: Population
allele count: 58
allele frequency: 7.401735579377233e-3
allele num: 7836
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 704
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6490
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12742
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5400
num of homozygotes: 0

Latino
type: Population
allele count: 4
allele frequency: 5.285412262156448e-4
allele num: 7568
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.92e-1

QD
type: SiteQuality
SIO_000300: 1.406e1

VQSLOD
type: SiteQuality
SIO_000300: 4.3e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.53e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 8.35e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.83e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.2e-2

DP
type: SiteQuality
SIO_000300: 1.186572e6

GenotypeQuality
all individuals: 1498
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3001
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 2465
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 127
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2023
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 567
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 406
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 276
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31756
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 129
bin: 4.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6112
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 1.090274749236808e-4
allele num: 45860
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12372
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5204
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7070
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7494
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 668
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.76e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.5e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.19e-1

QD
type: SiteQuality
SIO_000300: 1.461e1

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 8.76e-1

FS
type: SiteQuality
SIO_000300: 6.132e0

VQSLOD
type: SiteQuality
SIO_000300: 1.27e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.110514e6

GenotypeQuality
all individuals: 340
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 560
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3115
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 32638
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 146
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10756
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 923
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2390
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 83
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 663
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5982
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.524390243902439e-3
allele num: 656
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.462415911085113e-4
allele num: 6838
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 8.940945057892619e-5
allele num: 44738
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.637465203864418e-4
allele num: 12214
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.355748373101952e-4
allele num: 7376
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.944012441679627e-4
allele num: 5144
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.63e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.309e1

DP
type: SiteQuality
SIO_000300: 1.082088e6

BaseQRankSum
type: SiteQuality
SIO_000300: -3.65e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 5.2e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.32e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.7e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.39e-1

GenotypeQuality
all individuals: 47
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 6003
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 528
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 909
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3013
bin: 9.75e1
variant carriers: 27

GenotypeQuality
all individuals: 106
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 31314
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 659
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 911
bin: 7.75e1
variant carriers: 1

Latino
type: Population
allele count: 2
allele frequency: 3.473428273706148e-4
allele num: 5758
num of homozygotes: 0

African
type: Population
allele count: 23
allele frequency: 3.386336866902238e-3
allele num: 6792
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.92975685063682e-4
allele num: 5182
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 582
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11388
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4690
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.558591751100194e-5
allele num: 39084
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.342e1

MQRankSum
type: SiteQuality
SIO_000300: 5.8e-2

VQSLOD
type: SiteQuality
SIO_000300: 3.64e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.04e-1

FS
type: SiteQuality
SIO_000300: 1.115e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.47e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 2.45e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.5e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 9.89611e5

GenotypeQuality
all individuals: 1150
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31051
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 404
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 74
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 271
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 465
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2755
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 909
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 5.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 582
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 38332
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6704
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5572
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 8.884150675195451e-5
allele num: 11256
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5114
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4628
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.47e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.48e-2

QD
type: SiteQuality
SIO_000300: 1.229e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.55e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.84e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -3.12e-1

DP
type: SiteQuality
SIO_000300: 9.80309e5

ClippingRankSum
type: SiteQuality
SIO_000300: 5.56e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.55e-1

GenotypeQuality
all individuals: 31051
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 495
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2989
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 404
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2755
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 271
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 664
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1675
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 74
bin: 4.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 38332
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11256
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.983293556085919e-4
allele num: 6704
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.794687724335966e-4
allele num: 5572
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 582
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5114
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4628
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.55e-1

FS
type: SiteQuality
SIO_000300: 3.47e0

DP
type: SiteQuality
SIO_000300: 9.80309e5

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.48e-2

QD
type: SiteQuality
SIO_000300: 1.229e1

MQRankSum
type: SiteQuality
SIO_000300: -3.12e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.56e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.55e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.84e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 1819
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5664
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 530
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3979
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16098
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 327
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 111
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 811
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 257
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 382
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4868
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3128
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 25432
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 430
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2942
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3294
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9506
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 8.54028e5

BaseQRankSum
type: SiteQuality
SIO_000300: -1.754e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.8e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.3e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.5e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.0e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 4.5e0

QD
type: SiteQuality
SIO_000300: 1.617e1

GenotypeQuality
all individuals: 427
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15360
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 871
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7719
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 429
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 371
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2975
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 850
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 489
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10541
bin: 1.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1620
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8660
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 2.941176470588235e-3
allele num: 340
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2488
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1962
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3600
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 5.477051155657794e-5
allele num: 18258
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 6.6e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.46e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.04e0

QD
type: SiteQuality
SIO_000300: 9.49e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.65e-1

DP
type: SiteQuality
SIO_000300: 8.2298e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.1e-2

MQRankSum
type: SiteQuality
SIO_000300: 7.41e-1

GenotypeQuality
all individuals: 1039
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1610
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 371
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 845
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6741
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2973
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 490
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1750
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 868
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 559
bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 338
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1984
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1616
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 18348
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8668
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3604
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2486
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.75e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.1e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.370000000000001e-1

MQ
type: SiteQuality
SIO_000300: 5.728e1

DP
type: SiteQuality
SIO_000300: 8.22762e5

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -1.405e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.5e-1

QD
type: SiteQuality
SIO_000300: 5.95e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.75e0

GenotypeQuality
all individuals: 371
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 870
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 491
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15439
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6802
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 560
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 834
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 425
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1171
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1612
bin: 2.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3624
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1996
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2488
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1616
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 340
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 18372
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8674
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 8.22658e5

BaseQRankSum
type: SiteQuality
SIO_000300: 1.23e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 5.5e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.5e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.58e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.06e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.566e0

QD
type: SiteQuality
SIO_000300: 2.243e1

GenotypeQuality
all individuals: 386
bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3434
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13643
bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7776
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 802
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10258
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6252
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.674144512154289e-5
allele num: 59732
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14332
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.2e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.9e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.63e0

QD
type: SiteQuality
SIO_000300: 1.221e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.57e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.222e0

MQRankSum
type: SiteQuality
SIO_000300: 8.100000000000001e-1

MQ
type: SiteQuality
SIO_000300: 5.94e1

DP
type: SiteQuality
SIO_000300: 1.175015e6

GenotypeQuality
all individuals: 54
bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 505
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6554
bin: 2.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8726
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6298
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 820
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7950
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10468
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60716
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.743088334457182e-5
allele num: 14830
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.042e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 4.389e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.37e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.89e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.03e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.1e-2

DP
type: SiteQuality
SIO_000300: 1.31736e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.4e-3

VQSLOD
type: SiteQuality
SIO_000300: 7.55e-1

GenotypeQuality
all individuals: 3641
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 669
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2981
bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7950
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8726
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10468
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60716
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 820
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.587805652588123e-4
allele num: 6298
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14830
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.03e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.89e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.1e-2

FS
type: SiteQuality
SIO_000300: 4.389e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.4e-3

QD
type: SiteQuality
SIO_000300: 1.042e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.37e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.55e-1

DP
type: SiteQuality
SIO_000300: 1.31736e6

GenotypeQuality
all individuals: 127
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 134
bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1000
bin: 4.75e1
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3047
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 177
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6306
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8750
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7974
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.63735795919704e-5
allele num: 61074
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10532
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 824
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14958
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.342648e6

BaseQRankSum
type: SiteQuality
SIO_000300: 7.3e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 1.09e0

MQRankSum
type: SiteQuality
SIO_000300: 5.1e-1

VQSLOD
type: SiteQuality
SIO_000300: -6.98e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.3e-3

FS
type: SiteQuality
SIO_000300: 2.622e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.86e-1

MQ
type: SiteQuality
SIO_000300: 5.861e1

QD
type: SiteQuality
SIO_000300: 1.591e1

GenotypeQuality
all individuals: 860
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2759
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 696
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 680
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2308
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 239
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61274
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10566
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6322
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14976
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.142074006395614e-4
allele num: 8756
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 830
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8008
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.1e0

MQ
type: SiteQuality
SIO_000300: 5.931e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

VQSLOD
type: SiteQuality
SIO_000300: 2.85e0

DP
type: SiteQuality
SIO_000300: 1.350877e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.342e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.184e1

MQRankSum
type: SiteQuality
SIO_000300: 3.66e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.39e0

GenotypeQuality
all individuals: 874
bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 870
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variant carriers: 0

GenotypeQuality
all individuals: 5645
bin: 2.25e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.240387000744232e-4
allele num: 8062
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10644
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15132
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8764
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 838
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61752
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6340
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 6.2e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.89e-1

DP
type: SiteQuality
SIO_000300: 1.380999e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.27e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.74e0

QD
type: SiteQuality
SIO_000300: 1.373e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 6.28e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 22

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 388
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 8
allele frequency: 1.261829652996846e-3
allele num: 6340
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8764
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8062
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15132
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 14
allele frequency: 2.267133048322322e-4
allele num: 61752
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10644
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.193317422434368e-3
allele num: 838
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 4.74e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.380999e6

MQRankSum
type: SiteQuality
SIO_000300: 6.2e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.27e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 6.28e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.89e-1

QD
type: SiteQuality
SIO_000300: 1.373e1

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 8

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8074
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 838
num of homozygotes: 0

Latino
type: Population
allele count: 5
allele frequency: 4.686914135733033e-4
allele num: 10668
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6340
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8782
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.233107015842224e-5
allele num: 61860
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.585879873551106e-5
allele num: 15184
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.01e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.87e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.5e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 1.13e0

DP
type: SiteQuality
SIO_000300: 1.385801e6

ClippingRankSum
type: SiteQuality
SIO_000300: -3.57e-1

QD
type: SiteQuality
SIO_000300: 8.289999999999999e0

FS
type: SiteQuality
SIO_000300: 2.164e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1210
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3367
bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8118
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6366
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62210
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.863932898415657e-4
allele num: 10730
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8814
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15272
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 838
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.936e1

VQSLOD
type: SiteQuality
SIO_000300: 4.12e-1

FS
type: SiteQuality
SIO_000300: 3.008e0

MQRankSum
type: SiteQuality
SIO_000300: -3.47e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.7e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.71e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.88e0

DP
type: SiteQuality
SIO_000300: 1.394737e6

QD
type: SiteQuality
SIO_000300: 9.880000000000001e0

GenotypeQuality
all individuals: 738
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 186
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 237
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 838
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8814
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8118
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15272
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10730
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6366
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.822375823822536e-5
allele num: 62210
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.88e0

MQ
type: SiteQuality
SIO_000300: 5.936e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.71e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.47e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

QD
type: SiteQuality
SIO_000300: 9.880000000000001e0

FS
type: SiteQuality
SIO_000300: 3.008e0

VQSLOD
type: SiteQuality
SIO_000300: 4.12e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.7e-1

DP
type: SiteQuality
SIO_000300: 1.394737e6

GenotypeQuality
all individuals: 9
bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 503
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variant carriers: 0

GenotypeQuality
all individuals: 1203
bin: 2.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8812
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.604930346022983e-5
allele num: 62308
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8136
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6380
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10738
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 844
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15298
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.04e0

DP
type: SiteQuality
SIO_000300: 1.39986e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

FS
type: SiteQuality
SIO_000300: 3.05e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.933e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.3e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -6.02e-1

QD
type: SiteQuality
SIO_000300: 1.421e1

VQSLOD
type: SiteQuality
SIO_000300: 6.49e-1

GenotypeQuality
all individuals: 44
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8820
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.597699312989295e-5
allele num: 62590
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15442
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 848
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10808
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.21713729308666e-4
allele num: 8216
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6378
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.4e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

DP
type: SiteQuality
SIO_000300: 1.418029e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.22e0

MQRankSum
type: SiteQuality
SIO_000300: 5.92e-1

QD
type: SiteQuality
SIO_000300: 1.046e1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.8e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 1.28e0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

African
type: Population
allele count: 3
allele frequency: 3.396739130434783e-4
allele num: 8832
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8222
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 844
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.568381430363864e-4
allele num: 6376
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10812
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.192134580393909e-5
allele num: 62654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15466
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.96e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.5e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

DP
type: SiteQuality
SIO_000300: 1.420787e6

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.249e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.12e0

MQRankSum
type: SiteQuality
SIO_000300: 2.12e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.03e-1

GenotypeQuality
all individuals: 1166
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 735
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 400
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variant carriers: 0

GenotypeQuality
all individuals: 42275
bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 7.96787353391127e-5
allele num: 62752
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8236
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15472
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10844
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.563966218329684e-4
allele num: 6394
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 846
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8836
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.923e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.677e0

VQSLOD
type: SiteQuality
SIO_000300: 1.56e0

QD
type: SiteQuality
SIO_000300: 1.368e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.79e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.26e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.1e-3

FS
type: SiteQuality
SIO_000300: 1.107e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.36e-1

DP
type: SiteQuality
SIO_000300: 1.423874e6

GenotypeQuality
all individuals: 90
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 306
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 3

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 27
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variant carriers: 0

GenotypeQuality
all individuals: 238
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.777070063694267e-5
allele num: 62800
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8834
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6402
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 844
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10852
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8244
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15480
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

FS
type: SiteQuality
SIO_000300: 8.72e-1

QD
type: SiteQuality
SIO_000300: 8.1e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.75e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 1.74e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.39e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -2.9e-1

DP
type: SiteQuality
SIO_000300: 1.424238e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.89e0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 3563
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8842
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10854
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62810
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8254
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 848
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6404
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.454944487477407e-5
allele num: 15492
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.5388e1

QD
type: SiteQuality
SIO_000300: 1.163e1

MQRankSum
type: SiteQuality
SIO_000300: -2.11e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.74e0

VQSLOD
type: SiteQuality
SIO_000300: -4.065e0

DP
type: SiteQuality
SIO_000300: 1.425626e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.76e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.1e-2

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 41411
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GenotypeQuality
all individuals: 473
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 838
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.596984892522917e-5
allele num: 62618
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8764
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8240
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15450
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10762
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6368
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.429116e6

ClippingRankSum
type: SiteQuality
SIO_000300: 2.14e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-3

VQSLOD
type: SiteQuality
SIO_000300: 1.46e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.85e-1

QD
type: SiteQuality
SIO_000300: 1.315e1

MQRankSum
type: SiteQuality
SIO_000300: -1.19e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.854e0

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 745
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GenotypeQuality
all individuals: 1319
bin: 5.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6354
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8240
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8764
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15436
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.394270733422853e-5
allele num: 62556
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10750
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 834
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -3.131e-1

QD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.428543e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.53e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.16e0

FS
type: SiteQuality
SIO_000300: 9.611000000000001e0

MQRankSum
type: SiteQuality
SIO_000300: 7.95e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.09e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 627
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GenotypeQuality
all individuals: 382
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 834
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8236
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8762
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6354
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15434
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.598925522049183e-5
allele num: 62542
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10726
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.049e0

FS
type: SiteQuality
SIO_000300: 1.399e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.39e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -4.115e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.95e-1

QD
type: SiteQuality
SIO_000300: 6.36e0

DP
type: SiteQuality
SIO_000300: 1.428935e6

MQRankSum
type: SiteQuality
SIO_000300: 4.69e-1

MQ
type: SiteQuality
SIO_000300: 5.934e1

GenotypeQuality
all individuals: 233
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 728
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3515
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 734
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 378
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41555
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 654
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 112
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 809
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 181
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 3
allele frequency: 3.431708991077557e-4
allele num: 8742
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6340
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15414
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8218
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10686
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 826
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62314
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.428507e6

MQRankSum
type: SiteQuality
SIO_000300: -1.19e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.34e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.588e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

QD
type: SiteQuality
SIO_000300: 9.67e0

VQSLOD
type: SiteQuality
SIO_000300: 7.4e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.47e-1

GenotypeQuality
all individuals: 21
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 42117
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5838
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 810
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 383
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 178
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 235
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 722
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 286
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 334
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 661
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8736
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6336
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 828
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10668
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8206
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15418
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.606374092398638e-5
allele num: 62252
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -8.49e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.428608e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.96e-1

MQ
type: SiteQuality
SIO_000300: 5.883e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.26e-1

QD
type: SiteQuality
SIO_000300: 1.79e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -1.821e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.96e-1

GenotypeQuality
all individuals: 2297
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 123
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 232
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 311
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 648
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 684
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 593
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 860
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3189
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37880
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 333
bin: 4.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14938
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7936
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 794
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 9.848335631278314e-5
allele num: 10154
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 59516
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8454
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6088
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 9.51e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.78e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.49e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.369865e6

MQRankSum
type: SiteQuality
SIO_000300: 1.25e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.4e-3

VQSLOD
type: SiteQuality
SIO_000300: 4.62e-1

FS
type: SiteQuality
SIO_000300: 2.722e0

QD
type: SiteQuality
SIO_000300: 1.066e1

GenotypeQuality
all individuals: 2620
bin: 9.75e1
variant carriers: 354

GenotypeQuality
all individuals: 641
bin: 3.75e1
variant carriers: 2

GenotypeQuality
all individuals: 227
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 996
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9642
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 84
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 696
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 197
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38020
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 627
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 357
bin: 8.25e1
variant carriers: 1

South Asian
type: Population
allele count: 10
allele frequency: 6.696129637069774e-4
allele num: 14934
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 796
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7930
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 19
allele frequency: 3.126028298782494e-3
allele num: 6078
num of homozygotes: 0

Latino
type: Population
allele count: 30
allele frequency: 2.955665024630542e-3
allele num: 10150
num of homozygotes: 0

African
type: Population
allele count: 10
allele frequency: 1.182592242194891e-3
allele num: 8456
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 297
allele frequency: 4.991932230738201e-3
allele num: 59496
num of homozygotes: 2

DP
type: SiteQuality
SIO_000300: 1.374265e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.81e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 5.62e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.06e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.312e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.5e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.89e-1

QD
type: SiteQuality
SIO_000300: 1.291e1