1-207787719-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 207787719
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 207787719
    reference: chr 1
allele count: 21
allele frequency: 1.800565892137529e-4
allele num: 116630
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356016
  ensembl transcript: ENST00000367049
  gene symbol: CR1
  hgvsc: ENST00000367049.4:c.6576-30C>T
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000434718
  ensembl transcript: ENST00000529814
  gene symbol: CR1
  hgvsc: ENST00000529814.1:c.1180-2201C>T
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356020
  ensembl transcript: ENST00000367053
  gene symbol: CR1
  hgvsc: ENST00000367053.1:c.5226-30C>T
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356019
  ensembl transcript: ENST00000367052
  gene symbol: CR1
  hgvsc: ENST00000367052.1:c.5226-30C>T
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356018
  ensembl transcript: ENST00000367051
  gene symbol: CR1
  hgvsc: ENST00000367051.1:c.5226-30C>T
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000383744
  ensembl transcript: ENST00000400960
  gene symbol: CR1
  hgvsc: ENST00000400960.2:c.5226-30C>T
  variant of: http://identifiers.org/hgnc/2334
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2561
  bin: 9.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 1558
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20757
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1800
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7486
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2116
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12785
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3277
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3628
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 926
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 7.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 746
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 157
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1744
  bin: 3.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 1.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1765
  bin: 3.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 1098
  bin: 2.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 22001
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 155
  bin: 7.5e0
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 582
  bin: 5.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 2698
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 914
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1943
  bin: 2.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2890
  bin: 7.25e1
  variant carriers: 1
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQ

1-207787726-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 207787726
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 207787726
    reference: chr 1
allele count: 1
allele frequency: 8.467113730271625e-6
allele num: 118104
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356020
  ensembl transcript: ENST00000367053
  gene symbol: CR1
  hgvsc: ENST00000367053.1:c.5226-23G>T
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000434718
  ensembl transcript: ENST00000529814
  gene symbol: CR1
  hgvsc: ENST00000529814.1:c.1180-2194G>T
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356018
  ensembl transcript: ENST00000367051
  gene symbol: CR1
  hgvsc: ENST00000367051.1:c.5226-23G>T
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356016
  ensembl transcript: ENST00000367049
  gene symbol: CR1
  hgvsc: ENST00000367049.4:c.6576-23G>T
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356019
  ensembl transcript: ENST00000367052
  gene symbol: CR1
  hgvsc: ENST00000367052.1:c.5226-23G>T
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000383744
  ensembl transcript: ENST00000400960
  gene symbol: CR1
  hgvsc: ENST00000400960.2:c.5226-23G>T
  variant of: http://identifiers.org/hgnc/2334
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 810
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 926
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2562
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1248
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1784
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13590
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1780
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23282
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7679
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3285
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 599
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 281
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 715
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 325
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25934
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2925
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1454
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 535
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1630
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7385
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 249
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: G
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum

1-207787732-A-AT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 207787732
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 207787733
    reference: chr 1
allele count: 1
allele frequency: 8.402514032198434e-6
allele num: 119012
alternate allele: AT
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356020
  ensembl transcript: ENST00000367053
  gene symbol: CR1
  hgvsc: ENST00000367053.1:c.5226-17_5226-16insT
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000383744
  ensembl transcript: ENST00000400960
  gene symbol: CR1
  hgvsc: ENST00000400960.2:c.5226-17_5226-16insT
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000434718
  ensembl transcript: ENST00000529814
  gene symbol: CR1
  hgvsc: ENST00000529814.1:c.1180-2188_1180-2187insT
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356019
  ensembl transcript: ENST00000367052
  gene symbol: CR1
  hgvsc: ENST00000367052.1:c.5226-17_5226-16insT
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356018
  ensembl transcript: ENST00000367051
  gene symbol: CR1
  hgvsc: ENST00000367051.1:c.5226-17_5226-16insT
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356016
  ensembl transcript: ENST00000367049
  gene symbol: CR1
  hgvsc: ENST00000367049.4:c.6576-17_6576-16insT
  variant of: http://identifiers.org/hgnc/2334
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 7907
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14150
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 838
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 802
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 928
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24378
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3312
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 600
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2562
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1792
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 280
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 351
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3003
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7662
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 296
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3266
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: East Asian
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: QD

1-207787733-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 207787733
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 207787733
    reference: chr 1
allele count: 4
allele frequency: 3.391555027980329e-5
allele num: 117940
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356016
  ensembl transcript: ENST00000367049
  gene symbol: CR1
  hgvsc: ENST00000367049.4:c.6576-16C>T
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356018
  ensembl transcript: ENST00000367051
  gene symbol: CR1
  hgvsc: ENST00000367051.1:c.5226-16C>T
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356019
  ensembl transcript: ENST00000367052
  gene symbol: CR1
  hgvsc: ENST00000367052.1:c.5226-16C>T
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000434718
  ensembl transcript: ENST00000529814
  gene symbol: CR1
  hgvsc: ENST00000529814.1:c.1180-2187C>T
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000383744
  ensembl transcript: ENST00000400960
  gene symbol: CR1
  hgvsc: ENST00000400960.2:c.5226-16C>T
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356020
  ensembl transcript: ENST00000367053
  gene symbol: CR1
  hgvsc: ENST00000367053.1:c.5226-16C>T
  variant of: http://identifiers.org/hgnc/2334
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14410
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2173
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3694
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2613
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 647
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8823
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 161
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 531
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 287
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 719
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 765
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 491
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 681
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 562
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2899
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 569
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 24904
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1001
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: South Asian
population: African
population: East Asian
population: Latino
population: European (Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: FS
site quality: BaseQRankSum

1-207787733-CT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 207787733
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 207787732
    reference: chr 1
allele count: 36
allele frequency: 3.052399525182296e-4
allele num: 117940
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000434718
  ensembl transcript: ENST00000529814
  gene symbol: CR1
  hgvsc: ENST00000529814.1:c.1180-2178delT
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356018
  ensembl transcript: ENST00000367051
  gene symbol: CR1
  hgvsc: ENST00000367051.1:c.5226-7delT
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356019
  ensembl transcript: ENST00000367052
  gene symbol: CR1
  hgvsc: ENST00000367052.1:c.5226-7delT
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356020
  ensembl transcript: ENST00000367053
  gene symbol: CR1
  hgvsc: ENST00000367053.1:c.5226-7delT
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000383744
  ensembl transcript: ENST00000400960
  gene symbol: CR1
  hgvsc: ENST00000400960.2:c.5226-7delT
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356016
  ensembl transcript: ENST00000367049
  gene symbol: CR1
  hgvsc: ENST00000367049.4:c.6576-7delT
  variant of: http://identifiers.org/hgnc/2334
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3694
  bin: 3.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 22276
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2613
  bin: 9.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 14410
  bin: 2.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 733
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2173
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 710
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1099
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8823
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 8.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 647
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 531
  bin: 4.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 3964
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 166
  bin: 1.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 161
  bin: 7.5e0
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2899
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24904
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 569
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 491
  bin: 2.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 765
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 287
  bin: 2.5e0
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 719
  bin: 5.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1272
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 1.25e1
  variant carriers: 4
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
population: South Asian
population: European (Finnish)
reference allele: CT
site quality: MQ
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum

1-207787734-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 207787734
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 207787734
    reference: chr 1
allele count: 1
allele frequency: 8.452513777597457e-6
allele num: 118308
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356016
  ensembl transcript: ENST00000367049
  gene symbol: CR1
  hgvsc: ENST00000367049.4:c.6576-15T>C
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356020
  ensembl transcript: ENST00000367053
  gene symbol: CR1
  hgvsc: ENST00000367053.1:c.5226-15T>C
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356019
  ensembl transcript: ENST00000367052
  gene symbol: CR1
  hgvsc: ENST00000367052.1:c.5226-15T>C
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000434718
  ensembl transcript: ENST00000529814
  gene symbol: CR1
  hgvsc: ENST00000529814.1:c.1180-2186T>C
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356018
  ensembl transcript: ENST00000367051
  gene symbol: CR1
  hgvsc: ENST00000367051.1:c.5226-15T>C
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000383744
  ensembl transcript: ENST00000400960
  gene symbol: CR1
  hgvsc: ENST00000400960.2:c.5226-15T>C
  variant of: http://identifiers.org/hgnc/2334
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2147
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22202
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1034
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3689
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14601
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8838
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2575
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 697
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 159
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9319
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 165
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3208
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 498
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 452
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 325
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1037
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 521
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4021
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1624
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
population: East Asian
reference allele: T
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: MQ
site quality: InbreedingCoeff

1-207787735-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 207787735
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 207787735
    reference: chr 1
allele count: 1
allele frequency: 8.443378702421561e-6
allele num: 118436
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356019
  ensembl transcript: ENST00000367052
  gene symbol: CR1
  hgvsc: ENST00000367052.1:c.5226-14T>A
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356018
  ensembl transcript: ENST00000367051
  gene symbol: CR1
  hgvsc: ENST00000367051.1:c.5226-14T>A
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000383744
  ensembl transcript: ENST00000400960
  gene symbol: CR1
  hgvsc: ENST00000400960.2:c.5226-14T>A
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356016
  ensembl transcript: ENST00000367049
  gene symbol: CR1
  hgvsc: ENST00000367049.4:c.6576-14T>A
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000434718
  ensembl transcript: ENST00000529814
  gene symbol: CR1
  hgvsc: ENST00000529814.1:c.1180-2185T>A
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356020
  ensembl transcript: ENST00000367053
  gene symbol: CR1
  hgvsc: ENST00000367053.1:c.5226-14T>A
  variant of: http://identifiers.org/hgnc/2334
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14675
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2111
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3685
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22231
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8897
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 660
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1061
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 653
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2626
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 227
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 405
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1294
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9357
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 589
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 473
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 949
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4064
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25614
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1645
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 124
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: Other
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: QD

1-207787736-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 207787736
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 207787736
    reference: chr 1
allele count: 6
allele frequency: 5.021760964178105e-5
allele num: 119480
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000434718
  ensembl transcript: ENST00000529814
  gene symbol: CR1
  hgvsc: ENST00000529814.1:c.1180-2184T>A
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356020
  ensembl transcript: ENST00000367053
  gene symbol: CR1
  hgvsc: ENST00000367053.1:c.5226-13T>A
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356016
  ensembl transcript: ENST00000367049
  gene symbol: CR1
  hgvsc: ENST00000367049.4:c.6576-13T>A
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000383744
  ensembl transcript: ENST00000400960
  gene symbol: CR1
  hgvsc: ENST00000400960.2:c.5226-13T>A
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356018
  ensembl transcript: ENST00000367051
  gene symbol: CR1
  hgvsc: ENST00000367051.1:c.5226-13T>A
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356019
  ensembl transcript: ENST00000367052
  gene symbol: CR1
  hgvsc: ENST00000367052.1:c.5226-13T>A
  variant of: http://identifiers.org/hgnc/2334
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 979
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3588
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2616
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 570
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1938
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3408
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1724
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 251
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 700
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1370
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: African
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum

1-207787736-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 207787736
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 207787736
    reference: chr 1
allele count: 1
allele frequency: 8.369601606963508e-6
allele num: 119480
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000434718
  ensembl transcript: ENST00000529814
  gene symbol: CR1
  hgvsc: ENST00000529814.1:c.1180-2184T>C
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356019
  ensembl transcript: ENST00000367052
  gene symbol: CR1
  hgvsc: ENST00000367052.1:c.5226-13T>C
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356018
  ensembl transcript: ENST00000367051
  gene symbol: CR1
  hgvsc: ENST00000367051.1:c.5226-13T>C
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000383744
  ensembl transcript: ENST00000400960
  gene symbol: CR1
  hgvsc: ENST00000400960.2:c.5226-13T>C
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356016
  ensembl transcript: ENST00000367049
  gene symbol: CR1
  hgvsc: ENST00000367049.4:c.6576-13T>C
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356020
  ensembl transcript: ENST00000367053
  gene symbol: CR1
  hgvsc: ENST00000367053.1:c.5226-13T>C
  variant of: http://identifiers.org/hgnc/2334
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22470
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1938
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 979
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8798
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3588
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2616
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15111
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1370
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 181
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 228
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7995
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3126
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4288
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27011
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 161
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
reference allele: T
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum

1-207787742-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 207787742
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 207787742
    reference: chr 1
allele count: 1
allele frequency: 8.335556148306214e-6
allele num: 119968
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356018
  ensembl transcript: ENST00000367051
  gene symbol: CR1
  hgvsc: ENST00000367051.1:c.5226-7T>G
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356016
  ensembl transcript: ENST00000367049
  gene symbol: CR1
  hgvsc: ENST00000367049.4:c.6576-7T>G
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000383744
  ensembl transcript: ENST00000400960
  gene symbol: CR1
  hgvsc: ENST00000400960.2:c.5226-7T>G
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356019
  ensembl transcript: ENST00000367052
  gene symbol: CR1
  hgvsc: ENST00000367052.1:c.5226-7T>G
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356020
  ensembl transcript: ENST00000367053
  gene symbol: CR1
  hgvsc: ENST00000367053.1:c.5226-7T>G
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000434718
  ensembl transcript: ENST00000529814
  gene symbol: CR1
  hgvsc: ENST00000529814.1:c.1180-2178T>G
  variant of: http://identifiers.org/hgnc/2334
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 609
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 977
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8828
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3594
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22873
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15301
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1939
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2616
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1724
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 427
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1377
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27674
  bin: 6.25e1
  variant carriers: 0
hgvs: c.6576-7T>G
num of homozygotes: 0
population: Other
population: African
population: European (Finnish)
population: South Asian
population: Latino
population: European (Non-Finnish)
population: East Asian
reference allele: T
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: ReadPosRankSum

1-207787752-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 207787752
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 207787752
    reference: chr 1
allele count: 2
allele frequency: 1.658952537367906e-5
allele num: 120558
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356016
  ensembl transcript: ENST00000367049
  gene symbol: CR1
  hgvsc: ENST00000367049.4:c.6579C>T
  hgvsp: ENST00000367049.4:c.6579C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356019
  ensembl transcript: ENST00000367052
  gene symbol: CR1
  hgvsc: ENST00000367052.1:c.5229C>T
  hgvsp: ENST00000367052.1:c.5229C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000383744
  ensembl transcript: ENST00000400960
  gene symbol: CR1
  hgvsc: ENST00000400960.2:c.5229C>T
  hgvsp: ENST00000400960.2:c.5229C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356018
  ensembl transcript: ENST00000367051
  gene symbol: CR1
  hgvsc: ENST00000367051.1:c.5229C>T
  hgvsp: ENST00000367051.1:c.5229C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000434718
  ensembl transcript: ENST00000529814
  gene symbol: CR1
  hgvsc: ENST00000529814.1:c.1180-2168C>T
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356020
  ensembl transcript: ENST00000367053
  gene symbol: CR1
  hgvsc: ENST00000367053.1:c.5229C>T
  hgvsp: ENST00000367053.1:c.5229C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2334
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 23156
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15555
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 977
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8924
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2616
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1948
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3610
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9595
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 3135
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4326
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8156
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Phe2193Phe
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: ClippingRankSum

1-207787753-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 207787753
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 207787753
    reference: chr 1
allele count: 504
allele frequency: 4.197271773347324e-3
allele num: 120078
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356018
  ensembl transcript: ENST00000367051
  gene symbol: CR1
  hgvsc: ENST00000367051.1:c.5230C>T
  hgvsp: ENSP00000356018.1:p.Arg1744Ter
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356019
  ensembl transcript: ENST00000367052
  gene symbol: CR1
  hgvsc: ENST00000367052.1:c.5230C>T
  hgvsp: ENSP00000356019.1:p.Arg1744Ter
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356016
  ensembl transcript: ENST00000367049
  gene symbol: CR1
  hgvsc: ENST00000367049.4:c.6580C>T
  hgvsp: ENSP00000356016.4:p.Arg2194Ter
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356020
  ensembl transcript: ENST00000367053
  gene symbol: CR1
  hgvsc: ENST00000367053.1:c.5230C>T
  hgvsp: ENSP00000356020.1:p.Arg1744Ter
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000383744
  ensembl transcript: ENST00000400960
  gene symbol: CR1
  hgvsc: ENST00000400960.2:c.5230C>T
  hgvsp: ENSP00000383744.2:p.Arg1744Ter
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000434718
  ensembl transcript: ENST00000529814
  gene symbol: CR1
  hgvsc: ENST00000529814.1:c.1180-2167C>T
  variant of: http://identifiers.org/hgnc/2334
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 22277
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1113
  bin: 4.75e1
  variant carriers: 31
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 9.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 6.25e1
  variant carriers: 39
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15374
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 3708
  bin: 3.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 5.75e1
  variant carriers: 38
genotype depth: GenotypeDepth
  all individuals: 8945
  bin: 3.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 8.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 2129
  bin: 4.25e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 6.75e1
  variant carriers: 41
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 707
  bin: 5.25e1
  variant carriers: 40
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 7.25e1
  variant carriers: 34
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 7.75e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 2796
  bin: 9.75e1
  variant carriers: 187
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 8.25e1
  variant carriers: 23
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 7.5e0
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 265
  bin: 5.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 183
  bin: 4.25e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 1.75e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 2.75e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 1683
  bin: 9.25e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 1.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 170
  bin: 3.75e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 252
  bin: 5.25e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 3349
  bin: 7.25e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 2.5e0
  variant carriers: 9
hgvs: p.Arg2194Ter
num of homozygotes: 0
population: East Asian
population: South Asian
population: Latino
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP

1-207787754-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 207787754
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 207787754
    reference: chr 1
allele count: 4
allele frequency: 3.316419593406958e-5
allele num: 120612
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000434718
  ensembl transcript: ENST00000529814
  gene symbol: CR1
  hgvsc: ENST00000529814.1:c.1180-2166G>A
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356020
  ensembl transcript: ENST00000367053
  gene symbol: CR1
  hgvsc: ENST00000367053.1:c.5231G>A
  hgvsp: ENSP00000356020.1:p.Arg1744Gln
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356018
  ensembl transcript: ENST00000367051
  gene symbol: CR1
  hgvsc: ENST00000367051.1:c.5231G>A
  hgvsp: ENSP00000356018.1:p.Arg1744Gln
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000383744
  ensembl transcript: ENST00000400960
  gene symbol: CR1
  hgvsc: ENST00000400960.2:c.5231G>A
  hgvsp: ENSP00000383744.2:p.Arg1744Gln
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356016
  ensembl transcript: ENST00000367049
  gene symbol: CR1
  hgvsc: ENST00000367049.4:c.6581G>A
  hgvsp: ENSP00000356016.4:p.Arg2194Gln
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356019
  ensembl transcript: ENST00000367052
  gene symbol: CR1
  hgvsc: ENST00000367052.1:c.5231G>A
  hgvsp: ENSP00000356019.1:p.Arg1744Gln
  variant of: http://identifiers.org/hgnc/2334
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1988
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 647
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 454
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1026
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22355
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9078
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3676
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15735
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2705
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1720
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3416
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9987
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1384
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3071
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Arg2194Gln
num of homozygotes: 1
population: Other
population: African
population: European (Finnish)
population: South Asian
population: Latino
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: DP

1-207787754-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 207787754
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 207787754
    reference: chr 1
allele count: 3
allele frequency: 2.487314695055218e-5
allele num: 120612
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356018
  ensembl transcript: ENST00000367051
  gene symbol: CR1
  hgvsc: ENST00000367051.1:c.5231G>T
  hgvsp: ENSP00000356018.1:p.Arg1744Leu
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000383744
  ensembl transcript: ENST00000400960
  gene symbol: CR1
  hgvsc: ENST00000400960.2:c.5231G>T
  hgvsp: ENSP00000383744.2:p.Arg1744Leu
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356016
  ensembl transcript: ENST00000367049
  gene symbol: CR1
  hgvsc: ENST00000367049.4:c.6581G>T
  hgvsp: ENSP00000356016.4:p.Arg2194Leu
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356020
  ensembl transcript: ENST00000367053
  gene symbol: CR1
  hgvsc: ENST00000367053.1:c.5231G>T
  hgvsp: ENSP00000356020.1:p.Arg1744Leu
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356019
  ensembl transcript: ENST00000367052
  gene symbol: CR1
  hgvsc: ENST00000367052.1:c.5231G>T
  hgvsp: ENSP00000356019.1:p.Arg1744Leu
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000434718
  ensembl transcript: ENST00000529814
  gene symbol: CR1
  hgvsc: ENST00000529814.1:c.1180-2166G>T
  variant of: http://identifiers.org/hgnc/2334
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1026
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9078
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2705
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 454
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15735
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3676
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22355
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1988
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 647
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9987
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 8189
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1720
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3416
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3071
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Arg2194Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
population: Latino
population: East Asian
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum

1-207787763-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 207787763
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 207787763
    reference: chr 1
allele count: 95
allele frequency: 7.873232666456714e-4
allele num: 120662
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356019
  ensembl transcript: ENST00000367052
  gene symbol: CR1
  hgvsc: ENST00000367052.1:c.5240G>A
  hgvsp: ENSP00000356019.1:p.Gly1747Asp
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000434718
  ensembl transcript: ENST00000529814
  gene symbol: CR1
  hgvsc: ENST00000529814.1:c.1180-2157G>A
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356020
  ensembl transcript: ENST00000367053
  gene symbol: CR1
  hgvsc: ENST00000367053.1:c.5240G>A
  hgvsp: ENSP00000356020.1:p.Gly1747Asp
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356018
  ensembl transcript: ENST00000367051
  gene symbol: CR1
  hgvsc: ENST00000367051.1:c.5240G>A
  hgvsp: ENSP00000356018.1:p.Gly1747Asp
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000383744
  ensembl transcript: ENST00000400960
  gene symbol: CR1
  hgvsc: ENST00000400960.2:c.5240G>A
  hgvsp: ENSP00000383744.2:p.Gly1747Asp
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356016
  ensembl transcript: ENST00000367049
  gene symbol: CR1
  hgvsc: ENST00000367049.4:c.6590G>A
  hgvsp: ENSP00000356016.4:p.Gly2197Asp
  variant of: http://identifiers.org/hgnc/2334
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9071
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 656
  bin: 5.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22324
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 5.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 6.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2715
  bin: 9.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 1989
  bin: 4.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 7.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 6.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 3670
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1030
  bin: 4.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 9.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 15773
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 7.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 3424
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8190
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3066
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4293
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Gly2197Asp
num of homozygotes: 1
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: African
population: East Asian
population: Latino
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum

1-207787768-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 207787768
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 207787768
    reference: chr 1
allele count: 3
allele frequency: 2.485913158766987e-5
allele num: 120680
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356020
  ensembl transcript: ENST00000367053
  gene symbol: CR1
  hgvsc: ENST00000367053.1:c.5245T>C
  hgvsp: ENSP00000356020.1:p.Ser1749Pro
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356018
  ensembl transcript: ENST00000367051
  gene symbol: CR1
  hgvsc: ENST00000367051.1:c.5245T>C
  hgvsp: ENSP00000356018.1:p.Ser1749Pro
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356019
  ensembl transcript: ENST00000367052
  gene symbol: CR1
  hgvsc: ENST00000367052.1:c.5245T>C
  hgvsp: ENSP00000356019.1:p.Ser1749Pro
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000383744
  ensembl transcript: ENST00000400960
  gene symbol: CR1
  hgvsc: ENST00000400960.2:c.5245T>C
  hgvsp: ENSP00000383744.2:p.Ser1749Pro
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000434718
  ensembl transcript: ENST00000529814
  gene symbol: CR1
  hgvsc: ENST00000529814.1:c.1180-2152T>C
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356016
  ensembl transcript: ENST00000367049
  gene symbol: CR1
  hgvsc: ENST00000367049.4:c.6595T>C
  hgvsp: ENSP00000356016.4:p.Ser2199Pro
  variant of: http://identifiers.org/hgnc/2334
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 656
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1987
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3671
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22322
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15797
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9092
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2711
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1029
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1383
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4305
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8210
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Ser2199Pro
num of homozygotes: 0
population: Other
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
population: African
reference allele: T
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: MQ

1-207787778-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 207787778
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 207787778
    reference: chr 1
allele count: 13
allele frequency: 1.076961312235937e-4
allele num: 120710
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356018
  ensembl transcript: ENST00000367051
  gene symbol: CR1
  hgvsc: ENST00000367051.1:c.5255A>G
  hgvsp: ENSP00000356018.1:p.His1752Arg
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000383744
  ensembl transcript: ENST00000400960
  gene symbol: CR1
  hgvsc: ENST00000400960.2:c.5255A>G
  hgvsp: ENSP00000383744.2:p.His1752Arg
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356019
  ensembl transcript: ENST00000367052
  gene symbol: CR1
  hgvsc: ENST00000367052.1:c.5255A>G
  hgvsp: ENSP00000356019.1:p.His1752Arg
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000434718
  ensembl transcript: ENST00000529814
  gene symbol: CR1
  hgvsc: ENST00000529814.1:c.1180-2142A>G
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356020
  ensembl transcript: ENST00000367053
  gene symbol: CR1
  hgvsc: ENST00000367053.1:c.5255A>G
  hgvsp: ENSP00000356020.1:p.His1752Arg
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356016
  ensembl transcript: ENST00000367049
  gene symbol: CR1
  hgvsc: ENST00000367049.4:c.6605A>G
  hgvsp: ENSP00000356016.4:p.His2202Arg
  variant of: http://identifiers.org/hgnc/2334
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9099
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3673
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 22321
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2711
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1028
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 15809
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 655
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1987
  bin: 4.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4306
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28148
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1384
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3430
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.75e1
  variant carriers: 0
hgvs: p.His2202Arg
num of homozygotes: 0
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Latino
population: Other
reference allele: A
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: DP

1-207787783-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 207787783
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 207787783
    reference: chr 1
allele count: 1
allele frequency: 8.284043275842073e-6
allele num: 120714
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356020
  ensembl transcript: ENST00000367053
  gene symbol: CR1
  hgvsc: ENST00000367053.1:c.5260G>A
  hgvsp: ENSP00000356020.1:p.Val1754Ile
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356018
  ensembl transcript: ENST00000367051
  gene symbol: CR1
  hgvsc: ENST00000367051.1:c.5260G>A
  hgvsp: ENSP00000356018.1:p.Val1754Ile
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356019
  ensembl transcript: ENST00000367052
  gene symbol: CR1
  hgvsc: ENST00000367052.1:c.5260G>A
  hgvsp: ENSP00000356019.1:p.Val1754Ile
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000434718
  ensembl transcript: ENST00000529814
  gene symbol: CR1
  hgvsc: ENST00000529814.1:c.1180-2137G>A
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000383744
  ensembl transcript: ENST00000400960
  gene symbol: CR1
  hgvsc: ENST00000400960.2:c.5260G>A
  hgvsp: ENSP00000383744.2:p.Val1754Ile
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356016
  ensembl transcript: ENST00000367049
  gene symbol: CR1
  hgvsc: ENST00000367049.4:c.6610G>A
  hgvsp: ENSP00000356016.4:p.Val2204Ile
  variant of: http://identifiers.org/hgnc/2334
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1028
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15803
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9113
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22316
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2709
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 656
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3679
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1989
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4306
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1384
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1719
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3431
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28139
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Val2204Ile
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: DP

1-207787796-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 207787796
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 207787796
    reference: chr 1
allele count: 765
allele frequency: 6.486348991012379e-3
allele num: 117940
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356020
  ensembl transcript: ENST00000367053
  gene symbol: CR1
  hgvsc: ENST00000367053.1:c.5273T>C
  hgvsp: ENSP00000356020.1:p.Met1758Thr
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356019
  ensembl transcript: ENST00000367052
  gene symbol: CR1
  hgvsc: ENST00000367052.1:c.5273T>C
  hgvsp: ENSP00000356019.1:p.Met1758Thr
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000383744
  ensembl transcript: ENST00000400960
  gene symbol: CR1
  hgvsc: ENST00000400960.2:c.5273T>C
  hgvsp: ENSP00000383744.2:p.Met1758Thr
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000434718
  ensembl transcript: ENST00000529814
  gene symbol: CR1
  hgvsc: ENST00000529814.1:c.1180-2124T>C
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356018
  ensembl transcript: ENST00000367051
  gene symbol: CR1
  hgvsc: ENST00000367051.1:c.5273T>C
  hgvsp: ENSP00000356018.1:p.Met1758Thr
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356016
  ensembl transcript: ENST00000367049
  gene symbol: CR1
  hgvsc: ENST00000367049.4:c.6623T>C
  hgvsp: ENSP00000356016.4:p.Met2208Thr
  variant of: http://identifiers.org/hgnc/2334
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 657
  bin: 8.75e1
  variant carriers: 69
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3816
  bin: 9.75e1
  variant carriers: 281
genotype depth: GenotypeDepth
  all individuals: 1965
  bin: 4.25e1
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 1151
  bin: 4.75e1
  variant carriers: 43
genotype depth: GenotypeDepth
  all individuals: 3445
  bin: 3.75e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 808
  bin: 6.25e1
  variant carriers: 60
genotype depth: GenotypeDepth
  all individuals: 903
  bin: 7.25e1
  variant carriers: 78
genotype depth: GenotypeDepth
  all individuals: 14505
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 931
  bin: 5.25e1
  variant carriers: 61
genotype depth: GenotypeDepth
  all individuals: 19937
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8252
  bin: 3.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 847
  bin: 5.75e1
  variant carriers: 71
genotype depth: GenotypeDepth
  all individuals: 825
  bin: 7.75e1
  variant carriers: 94
genotype depth: GenotypeDepth
  all individuals: 850
  bin: 8.25e1
  variant carriers: 82
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 9.25e1
  variant carriers: 57
genotype depth: GenotypeDepth
  all individuals: 855
  bin: 6.75e1
  variant carriers: 95
genotype quality: GenotypeQuality
  all individuals: 3102
  bin: 7.25e1
  variant carriers: 17
genotype quality: GenotypeQuality
  all individuals: 2742
  bin: 8.25e1
  variant carriers: 22
genotype quality: GenotypeQuality
  all individuals: 405
  bin: 3.75e1
  variant carriers: 55
genotype quality: GenotypeQuality
  all individuals: 276
  bin: 7.5e0
  variant carriers: 62
genotype quality: GenotypeQuality
  all individuals: 331
  bin: 1.25e1
  variant carriers: 95
genotype quality: GenotypeQuality
  all individuals: 496
  bin: 2.5e0
  variant carriers: 55
genotype quality: GenotypeQuality
  all individuals: 432
  bin: 5.25e1
  variant carriers: 31
genotype quality: GenotypeQuality
  all individuals: 402
  bin: 4.25e1
  variant carriers: 37
genotype quality: GenotypeQuality
  all individuals: 325
  bin: 1.75e1
  variant carriers: 78
genotype quality: GenotypeQuality
  all individuals: 375
  bin: 2.25e1
  variant carriers: 71
genotype quality: GenotypeQuality
  all individuals: 1244
  bin: 8.75e1
  variant carriers: 16
hgvs: p.Met2208Thr
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Other
population: African
population: Latino
population: South Asian
population: European (Finnish)
reference allele: T
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: MQ

1-207787806-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 207787806
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 207787806
    reference: chr 1
allele count: 1
allele frequency: 8.282670995742708e-6
allele num: 120734
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356016
  ensembl transcript: ENST00000367049
  gene symbol: CR1
  hgvsc: ENST00000367049.4:c.6633T>C
  hgvsp: ENST00000367049.4:c.6633T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356019
  ensembl transcript: ENST00000367052
  gene symbol: CR1
  hgvsc: ENST00000367052.1:c.5283T>C
  hgvsp: ENST00000367052.1:c.5283T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356018
  ensembl transcript: ENST00000367051
  gene symbol: CR1
  hgvsc: ENST00000367051.1:c.5283T>C
  hgvsp: ENST00000367051.1:c.5283T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000383744
  ensembl transcript: ENST00000400960
  gene symbol: CR1
  hgvsc: ENST00000400960.2:c.5283T>C
  hgvsp: ENST00000400960.2:c.5283T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000434718
  ensembl transcript: ENST00000529814
  gene symbol: CR1
  hgvsc: ENST00000529814.1:c.1180-2114T>C
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356020
  ensembl transcript: ENST00000367053
  gene symbol: CR1
  hgvsc: ENST00000367053.1:c.5283T>C
  hgvsp: ENST00000367053.1:c.5283T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/2334
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 499
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 712
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9977
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16307
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4090
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1096
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20185
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2124
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2722
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28221
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Leu2211Leu
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
population: African
population: South Asian
reference allele: T
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum

1-207787812-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 207787812
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 207787812
    reference: chr 1
allele count: 1
allele frequency: 8.28239659427852e-6
allele num: 120738
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000434718
  ensembl transcript: ENST00000529814
  gene symbol: CR1
  hgvsc: ENST00000529814.1:c.1180-2108T>C
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356020
  ensembl transcript: ENST00000367053
  gene symbol: CR1
  hgvsc: ENST00000367053.1:c.5289T>C
  hgvsp: ENST00000367053.1:c.5289T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356018
  ensembl transcript: ENST00000367051
  gene symbol: CR1
  hgvsc: ENST00000367051.1:c.5289T>C
  hgvsp: ENST00000367051.1:c.5289T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356016
  ensembl transcript: ENST00000367049
  gene symbol: CR1
  hgvsc: ENST00000367049.4:c.6639T>C
  hgvsp: ENST00000367049.4:c.6639T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000383744
  ensembl transcript: ENST00000400960
  gene symbol: CR1
  hgvsc: ENST00000400960.2:c.5289T>C
  hgvsp: ENST00000400960.2:c.5289T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356019
  ensembl transcript: ENST00000367052
  gene symbol: CR1
  hgvsc: ENST00000367052.1:c.5289T>C
  hgvsp: ENST00000367052.1:c.5289T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/2334
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 499
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20177
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4090
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16303
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2723
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1095
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2123
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9979
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3364
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28210
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10076
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1716
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Asn2213Asn
num of homozygotes: 0
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
population: Latino
population: East Asian
population: South Asian
reference allele: T
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ

1-207787813-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 207787813
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 207787813
    reference: chr 1
allele count: 1
allele frequency: 8.28239659427852e-6
allele num: 120738
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356020
  ensembl transcript: ENST00000367053
  gene symbol: CR1
  hgvsc: ENST00000367053.1:c.5290A>G
  hgvsp: ENSP00000356020.1:p.Ser1764Gly
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356019
  ensembl transcript: ENST00000367052
  gene symbol: CR1
  hgvsc: ENST00000367052.1:c.5290A>G
  hgvsp: ENSP00000356019.1:p.Ser1764Gly
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356018
  ensembl transcript: ENST00000367051
  gene symbol: CR1
  hgvsc: ENST00000367051.1:c.5290A>G
  hgvsp: ENSP00000356018.1:p.Ser1764Gly
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000383744
  ensembl transcript: ENST00000400960
  gene symbol: CR1
  hgvsc: ENST00000400960.2:c.5290A>G
  hgvsp: ENSP00000383744.2:p.Ser1764Gly
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000434718
  ensembl transcript: ENST00000529814
  gene symbol: CR1
  hgvsc: ENST00000529814.1:c.1180-2107A>G
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356016
  ensembl transcript: ENST00000367049
  gene symbol: CR1
  hgvsc: ENST00000367049.4:c.6640A>G
  hgvsp: ENSP00000356016.4:p.Ser2214Gly
  variant of: http://identifiers.org/hgnc/2334
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16303
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20176
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2123
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9978
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4090
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1095
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2722
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2968
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4239
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1328
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8416
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Ser2214Gly
num of homozygotes: 0
population: Latino
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: South Asian
population: East Asian
reference allele: A
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum

1-207787826-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 207787826
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 207787826
    reference: chr 1
allele count: 11
allele frequency: 9.111541838543479e-5
allele num: 120726
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356019
  ensembl transcript: ENST00000367052
  gene symbol: CR1
  hgvsc: ENST00000367052.1:c.5303T>C
  hgvsp: ENSP00000356019.1:p.Val1768Ala
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356016
  ensembl transcript: ENST00000367049
  gene symbol: CR1
  hgvsc: ENST00000367049.4:c.6653T>C
  hgvsp: ENSP00000356016.4:p.Val2218Ala
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356020
  ensembl transcript: ENST00000367053
  gene symbol: CR1
  hgvsc: ENST00000367053.1:c.5303T>C
  hgvsp: ENSP00000356020.1:p.Val1768Ala
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000383744
  ensembl transcript: ENST00000400960
  gene symbol: CR1
  hgvsc: ENST00000400960.2:c.5303T>C
  hgvsp: ENSP00000383744.2:p.Val1768Ala
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000434718
  ensembl transcript: ENST00000529814
  gene symbol: CR1
  hgvsc: ENST00000529814.1:c.1180-2094T>C
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356018
  ensembl transcript: ENST00000367051
  gene symbol: CR1
  hgvsc: ENST00000367051.1:c.5303T>C
  hgvsp: ENSP00000356018.1:p.Val1768Ala
  variant of: http://identifiers.org/hgnc/2334
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1095
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4090
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2119
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 8.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 20138
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9973
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2725
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 16295
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1326
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2968
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3361
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8409
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Val2218Ala
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
population: Other
population: South Asian
population: European (Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD

1-207787831-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 207787831
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 207787831
    reference: chr 1
allele count: 225
allele frequency: 1.868925990530775e-3
allele num: 120390
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356016
  ensembl transcript: ENST00000367049
  gene symbol: CR1
  hgvsc: ENST00000367049.4:c.6658G>T
  hgvsp: ENSP00000356016.4:p.Glu2220Ter
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356019
  ensembl transcript: ENST00000367052
  gene symbol: CR1
  hgvsc: ENST00000367052.1:c.5308G>T
  hgvsp: ENSP00000356019.1:p.Glu1770Ter
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356018
  ensembl transcript: ENST00000367051
  gene symbol: CR1
  hgvsc: ENST00000367051.1:c.5308G>T
  hgvsp: ENSP00000356018.1:p.Glu1770Ter
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000434718
  ensembl transcript: ENST00000529814
  gene symbol: CR1
  hgvsc: ENST00000529814.1:c.1180-2089G>T
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356020
  ensembl transcript: ENST00000367053
  gene symbol: CR1
  hgvsc: ENST00000367053.1:c.5308G>T
  hgvsp: ENSP00000356020.1:p.Glu1770Ter
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000383744
  ensembl transcript: ENST00000400960
  gene symbol: CR1
  hgvsc: ENST00000400960.2:c.5308G>T
  hgvsp: ENSP00000383744.2:p.Glu1770Ter
  variant of: http://identifiers.org/hgnc/2334
canonical: true
consequence: stop gained
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 4087
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 16267
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 8.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 7.75e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 7.25e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 703
  bin: 5.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 9.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 5.75e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 8.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 6.25e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 9966
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2127
  bin: 4.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 6.75e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 2739
  bin: 9.75e1
  variant carriers: 61
genotype depth: GenotypeDepth
  all individuals: 1102
  bin: 4.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 20108
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 3.75e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 2.25e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 4.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 2965
  bin: 8.25e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 2.75e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 2.5e0
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 28128
  bin: 6.25e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 1327
  bin: 8.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 5.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 1.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 7.5e0
  variant carriers: 5
hgvs: p.Glu2220Ter
num of homozygotes: 0
population: Other
population: South Asian
population: East Asian
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum

1-207787852-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 207787852
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 207787852
    reference: chr 1
allele count: 87
allele frequency: 7.22579359146858e-4
allele num: 120402
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356020
  ensembl transcript: ENST00000367053
  gene symbol: CR1
  hgvsc: ENST00000367053.1:c.5311+18T>C
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000383744
  ensembl transcript: ENST00000400960
  gene symbol: CR1
  hgvsc: ENST00000400960.2:c.5311+18T>C
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356016
  ensembl transcript: ENST00000367049
  gene symbol: CR1
  hgvsc: ENST00000367049.4:c.6661+18T>C
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356019
  ensembl transcript: ENST00000367052
  gene symbol: CR1
  hgvsc: ENST00000367052.1:c.5311+18T>C
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000434718
  ensembl transcript: ENST00000529814
  gene symbol: CR1
  hgvsc: ENST00000529814.1:c.1180-2068T>C
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356018
  ensembl transcript: ENST00000367051
  gene symbol: CR1
  hgvsc: ENST00000367051.1:c.5311+18T>C
  variant of: http://identifiers.org/hgnc/2334
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 7.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 2673
  bin: 9.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1116
  bin: 4.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19758
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 6.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 8.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2143
  bin: 4.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 9994
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 8.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 708
  bin: 5.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 16246
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4117
  bin: 3.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 6.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 5.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 7.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 1.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 3336
  bin: 7.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 273
  bin: 2.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 4209
  bin: 7.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1696
  bin: 9.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 3.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 4.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 7.5e0
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 3.25e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 2.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 1.25e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 4.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 8329
  bin: 6.75e1
  variant carriers: 3
num of homozygotes: 0
population: European (Finnish)
population: Other
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD

1-207787854-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 207787854
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 207787854
    reference: chr 1
allele count: 4
allele frequency: 3.317134659081486e-5
allele num: 120586
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356016
  ensembl transcript: ENST00000367049
  gene symbol: CR1
  hgvsc: ENST00000367049.4:c.6661+20T>C
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356018
  ensembl transcript: ENST00000367051
  gene symbol: CR1
  hgvsc: ENST00000367051.1:c.5311+20T>C
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000383744
  ensembl transcript: ENST00000400960
  gene symbol: CR1
  hgvsc: ENST00000400960.2:c.5311+20T>C
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000434718
  ensembl transcript: ENST00000529814
  gene symbol: CR1
  hgvsc: ENST00000529814.1:c.1180-2066T>C
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356019
  ensembl transcript: ENST00000367052
  gene symbol: CR1
  hgvsc: ENST00000367052.1:c.5311+20T>C
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356020
  ensembl transcript: ENST00000367053
  gene symbol: CR1
  hgvsc: ENST00000367053.1:c.5311+20T>C
  variant of: http://identifiers.org/hgnc/2334
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2101
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 542
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19530
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 675
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1074
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16330
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4103
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2658
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10010
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2970
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3350
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 163
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27455
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1326
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4233
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9676
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 378
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 234
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Other
reference allele: T
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum

1-207787862-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 207787862
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 207787862
    reference: chr 1
allele count: 1
allele frequency: 8.29655195300833e-6
allele num: 120532
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356018
  ensembl transcript: ENST00000367051
  gene symbol: CR1
  hgvsc: ENST00000367051.1:c.5311+28A>G
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356019
  ensembl transcript: ENST00000367052
  gene symbol: CR1
  hgvsc: ENST00000367052.1:c.5311+28A>G
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356020
  ensembl transcript: ENST00000367053
  gene symbol: CR1
  hgvsc: ENST00000367053.1:c.5311+28A>G
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000434718
  ensembl transcript: ENST00000529814
  gene symbol: CR1
  hgvsc: ENST00000529814.1:c.1180-2058A>G
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000383744
  ensembl transcript: ENST00000400960
  gene symbol: CR1
  hgvsc: ENST00000400960.2:c.5311+28A>G
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356016
  ensembl transcript: ENST00000367049
  gene symbol: CR1
  hgvsc: ENST00000367049.4:c.6661+28A>G
  variant of: http://identifiers.org/hgnc/2334
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4062
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1070
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9811
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 909
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2658
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 952
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 672
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2094
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16078
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19099
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 613
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 453
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1326
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26677
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8221
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 387
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9671
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Other
population: European (Finnish)
population: Latino
reference allele: A
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum

1-207787869-T-TC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 207787869
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 207787870
    reference: chr 1
allele count: 3
allele frequency: 2.491528802072952e-5
allele num: 120408
alternate allele: TC
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356020
  ensembl transcript: ENST00000367053
  gene symbol: CR1
  hgvsc: ENST00000367053.1:c.5311+37dupC
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000383744
  ensembl transcript: ENST00000400960
  gene symbol: CR1
  hgvsc: ENST00000400960.2:c.5311+37dupC
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356018
  ensembl transcript: ENST00000367051
  gene symbol: CR1
  hgvsc: ENST00000367051.1:c.5311+37dupC
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000434718
  ensembl transcript: ENST00000529814
  gene symbol: CR1
  hgvsc: ENST00000529814.1:c.1180-2049dupC
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356019
  ensembl transcript: ENST00000367052
  gene symbol: CR1
  hgvsc: ENST00000367052.1:c.5311+37dupC
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356016
  ensembl transcript: ENST00000367049
  gene symbol: CR1
  hgvsc: ENST00000367049.4:c.6661+37dupC
  variant of: http://identifiers.org/hgnc/2334
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 671
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2658
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1066
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9326
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3468
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17613
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15194
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1338
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2065
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3957
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1334
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 422
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 911
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 582
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1124
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2960
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1322
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1701
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9669
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4169
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: South Asian
population: East Asian
reference allele: T
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: QD

1-207787873-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 207787873
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 207787873
    reference: chr 1
allele count: 68
allele frequency: 5.651783636424083e-4
allele num: 120316
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000434718
  ensembl transcript: ENST00000529814
  gene symbol: CR1
  hgvsc: ENST00000529814.1:c.1180-2047T>C
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356018
  ensembl transcript: ENST00000367051
  gene symbol: CR1
  hgvsc: ENST00000367051.1:c.5311+39T>C
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356019
  ensembl transcript: ENST00000367052
  gene symbol: CR1
  hgvsc: ENST00000367052.1:c.5311+39T>C
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356016
  ensembl transcript: ENST00000367049
  gene symbol: CR1
  hgvsc: ENST00000367049.4:c.6661+39T>C
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000383744
  ensembl transcript: ENST00000400960
  gene symbol: CR1
  hgvsc: ENST00000400960.2:c.5311+39T>C
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356020
  ensembl transcript: ENST00000367053
  gene symbol: CR1
  hgvsc: ENST00000367053.1:c.5311+39T>C
  variant of: http://identifiers.org/hgnc/2334
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1337
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4603
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 674
  bin: 5.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14658
  bin: 2.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 9014
  bin: 3.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3894
  bin: 3.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 1065
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2666
  bin: 9.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17352
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2059
  bin: 4.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 5.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 1479
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4150
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 368
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 722
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 693
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 953
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1330
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21449
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1841
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: Other
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: ReadPosRankSum

1-207787873-T-TG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 207787873
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 207787874
    reference: chr 1
allele count: 2
allele frequency: 1.662289304830613e-5
allele num: 120316
alternate allele: TG
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356020
  ensembl transcript: ENST00000367053
  gene symbol: CR1
  hgvsc: ENST00000367053.1:c.5311+39_5311+40insG
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356018
  ensembl transcript: ENST00000367051
  gene symbol: CR1
  hgvsc: ENST00000367051.1:c.5311+39_5311+40insG
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356019
  ensembl transcript: ENST00000367052
  gene symbol: CR1
  hgvsc: ENST00000367052.1:c.5311+39_5311+40insG
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000383744
  ensembl transcript: ENST00000400960
  gene symbol: CR1
  hgvsc: ENST00000400960.2:c.5311+39_5311+40insG
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000434718
  ensembl transcript: ENST00000529814
  gene symbol: CR1
  hgvsc: ENST00000529814.1:c.1180-2047_1180-2046insG
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356016
  ensembl transcript: ENST00000367049
  gene symbol: CR1
  hgvsc: ENST00000367049.4:c.6661+39_6661+40insG
  variant of: http://identifiers.org/hgnc/2334
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9014
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4603
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17352
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1065
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2666
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3894
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1337
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 674
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14658
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2059
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1841
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1316
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3206
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 368
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4150
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 948
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2952
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 693
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 953
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: T
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum

1-207787874-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 207787874
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 207787874
    reference: chr 1
allele count: 1
allele frequency: 8.316146630297385e-6
allele num: 120248
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000434718
  ensembl transcript: ENST00000529814
  gene symbol: CR1
  hgvsc: ENST00000529814.1:c.1180-2046A>G
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000383744
  ensembl transcript: ENST00000400960
  gene symbol: CR1
  hgvsc: ENST00000400960.2:c.5311+40A>G
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356018
  ensembl transcript: ENST00000367051
  gene symbol: CR1
  hgvsc: ENST00000367051.1:c.5311+40A>G
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356016
  ensembl transcript: ENST00000367049
  gene symbol: CR1
  hgvsc: ENST00000367049.4:c.6661+40A>G
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356019
  ensembl transcript: ENST00000367052
  gene symbol: CR1
  hgvsc: ENST00000367052.1:c.5311+40A>G
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356020
  ensembl transcript: ENST00000367053
  gene symbol: CR1
  hgvsc: ENST00000367053.1:c.5311+40A>G
  variant of: http://identifiers.org/hgnc/2334
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17371
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4607
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2665
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8963
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1339
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 673
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14696
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1063
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3890
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2057
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1339
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9668
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 957
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 700
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1707
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2946
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1863
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4145
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3191
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Other
population: Latino
population: African
population: European (Finnish)
reference allele: A
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum

1-207787875-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 207787875
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 207787875
    reference: chr 1
allele count: 1
allele frequency: 8.320852055250457e-6
allele num: 120180
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356016
  ensembl transcript: ENST00000367049
  gene symbol: CR1
  hgvsc: ENST00000367049.4:c.6661+41T>A
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000434718
  ensembl transcript: ENST00000529814
  gene symbol: CR1
  hgvsc: ENST00000529814.1:c.1180-2045T>A
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356019
  ensembl transcript: ENST00000367052
  gene symbol: CR1
  hgvsc: ENST00000367052.1:c.5311+41T>A
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356020
  ensembl transcript: ENST00000367053
  gene symbol: CR1
  hgvsc: ENST00000367053.1:c.5311+41T>A
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000383744
  ensembl transcript: ENST00000400960
  gene symbol: CR1
  hgvsc: ENST00000400960.2:c.5311+41T>A
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356018
  ensembl transcript: ENST00000367051
  gene symbol: CR1
  hgvsc: ENST00000367051.1:c.5311+41T>A
  variant of: http://identifiers.org/hgnc/2334
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 14247
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8806
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4606
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17988
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3874
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 672
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2059
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1326
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2665
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1063
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 953
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1181
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20170
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1402
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 530
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2059
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 995
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1319
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 720
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ

1-207787877-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 207787877
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 207787877
    reference: chr 1
allele count: 1
allele frequency: 8.316561600771776e-6
allele num: 120242
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356020
  ensembl transcript: ENST00000367053
  gene symbol: CR1
  hgvsc: ENST00000367053.1:c.5311+43T>C
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000383744
  ensembl transcript: ENST00000400960
  gene symbol: CR1
  hgvsc: ENST00000400960.2:c.5311+43T>C
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356019
  ensembl transcript: ENST00000367052
  gene symbol: CR1
  hgvsc: ENST00000367052.1:c.5311+43T>C
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356018
  ensembl transcript: ENST00000367051
  gene symbol: CR1
  hgvsc: ENST00000367051.1:c.5311+43T>C
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356016
  ensembl transcript: ENST00000367049
  gene symbol: CR1
  hgvsc: ENST00000367049.4:c.6661+43T>C
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000434718
  ensembl transcript: ENST00000529814
  gene symbol: CR1
  hgvsc: ENST00000529814.1:c.1180-2043T>C
  variant of: http://identifiers.org/hgnc/2334
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18237
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2053
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1333
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 671
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4598
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1061
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8704
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14117
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2665
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3857
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4141
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7346
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 967
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2108
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1241
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1010
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1415
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20073
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 731
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Other
population: South Asian
population: African
reference allele: T
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD

1-207787883-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 207787883
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 207787883
    reference: chr 1
allele count: 2
allele frequency: 1.669421211665915e-5
allele num: 119802
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356016
  ensembl transcript: ENST00000367049
  gene symbol: CR1
  hgvsc: ENST00000367049.4:c.6661+49T>C
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356019
  ensembl transcript: ENST00000367052
  gene symbol: CR1
  hgvsc: ENST00000367052.1:c.5311+49T>C
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356018
  ensembl transcript: ENST00000367051
  gene symbol: CR1
  hgvsc: ENST00000367051.1:c.5311+49T>C
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356020
  ensembl transcript: ENST00000367053
  gene symbol: CR1
  hgvsc: ENST00000367053.1:c.5311+49T>C
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000434718
  ensembl transcript: ENST00000529814
  gene symbol: CR1
  hgvsc: ENST00000529814.1:c.1180-2037T>C
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000383744
  ensembl transcript: ENST00000400960
  gene symbol: CR1
  hgvsc: ENST00000400960.2:c.5311+49T>C
  variant of: http://identifiers.org/hgnc/2334
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3855
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4554
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1408
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14540
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18154
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 673
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8302
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2030
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1054
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 455
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2665
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 213
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1533
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3953
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3299
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2136
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9674
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 834
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4116
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1312
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6811
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
reference allele: T
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD

1-207789871-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 207789871
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 207789871
    reference: chr 1
allele count: 1
allele frequency: 8.476587664869631e-6
allele num: 117972
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000434718
  ensembl transcript: ENST00000529814
  gene symbol: CR1
  hgvsc: ENST00000529814.1:c.1180-49A>G
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356018
  ensembl transcript: ENST00000367051
  gene symbol: CR1
  hgvsc: ENST00000367051.1:c.5312-49A>G
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356019
  ensembl transcript: ENST00000367052
  gene symbol: CR1
  hgvsc: ENST00000367052.1:c.5312-49A>G
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356020
  ensembl transcript: ENST00000367053
  gene symbol: CR1
  hgvsc: ENST00000367053.1:c.5312-49A>G
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356016
  ensembl transcript: ENST00000367049
  gene symbol: CR1
  hgvsc: ENST00000367049.4:c.6662-49A>G
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000383744
  ensembl transcript: ENST00000400960
  gene symbol: CR1
  hgvsc: ENST00000400960.2:c.5312-49A>G
  variant of: http://identifiers.org/hgnc/2334
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1227
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6712
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 781
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5206
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1943
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2920
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8711
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3387
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1224
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9013
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3225
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7655
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2255
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4239
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1110
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2020
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5177
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27948
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1172
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 656
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1228
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 415
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1283
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 273
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: African
population: East Asian
population: Other
reference allele: A
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: DP

http://identifiers.org/exac.variant/1-207789876-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 207789876
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 207789876
    reference: chr 1
allele count: 1
allele frequency: 8.475007203756124e-6
allele num: 117994
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356016
  ensembl transcript: ENST00000367049
  gene symbol: CR1
  hgvsc: ENST00000367049.4:c.6662-44A>C
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356018
  ensembl transcript: ENST00000367051
  gene symbol: CR1
  hgvsc: ENST00000367051.1:c.5312-44A>C
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000434718
  ensembl transcript: ENST00000529814
  gene symbol: CR1
  hgvsc: ENST00000529814.1:c.1180-44A>C
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356020
  ensembl transcript: ENST00000367053
  gene symbol: CR1
  hgvsc: ENST00000367053.1:c.5312-44A>C
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000383744
  ensembl transcript: ENST00000400960
  gene symbol: CR1
  hgvsc: ENST00000400960.2:c.5312-44A>C
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356019
  ensembl transcript: ENST00000367052
  gene symbol: CR1
  hgvsc: ENST00000367052.1:c.5312-44A>C
  variant of: http://identifiers.org/hgnc/2334
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7655
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2255
  bin: 9.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 129
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
population: Other
population: South Asian
reference allele: A
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: DP

http://identifiers.org/exac.variant/1-207789881-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 207789881
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 207789881
    reference: chr 1
allele count: 1
allele frequency: 8.465966813410092e-6
allele num: 118120
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356020
  ensembl transcript: ENST00000367053
  gene symbol: CR1
  hgvsc: ENST00000367053.1:c.5312-39A>C
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000383744
  ensembl transcript: ENST00000400960
  gene symbol: CR1
  hgvsc: ENST00000400960.2:c.5312-39A>C
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000434718
  ensembl transcript: ENST00000529814
  gene symbol: CR1
  hgvsc: ENST00000529814.1:c.1180-39A>C
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356019
  ensembl transcript: ENST00000367052
  gene symbol: CR1
  hgvsc: ENST00000367052.1:c.5312-39A>C
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356018
  ensembl transcript: ENST00000367051
  gene symbol: CR1
  hgvsc: ENST00000367051.1:c.5312-39A>C
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356016
  ensembl transcript: ENST00000367049
  gene symbol: CR1
  hgvsc: ENST00000367049.4:c.6662-39A>C
  variant of: http://identifiers.org/hgnc/2334
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5214
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 781
  bin: 6.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 1.25e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
population: African
population: East Asian
reference allele: A
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum

1-207789891-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 207789891
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 207789891
    reference: chr 1
allele count: 1
allele frequency: 8.447801037389967e-6
allele num: 118374
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000434718
  ensembl transcript: ENST00000529814
  gene symbol: CR1
  hgvsc: ENST00000529814.1:c.1180-29A>G
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356016
  ensembl transcript: ENST00000367049
  gene symbol: CR1
  hgvsc: ENST00000367049.4:c.6662-29A>G
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356018
  ensembl transcript: ENST00000367051
  gene symbol: CR1
  hgvsc: ENST00000367051.1:c.5312-29A>G
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000383744
  ensembl transcript: ENST00000400960
  gene symbol: CR1
  hgvsc: ENST00000400960.2:c.5312-29A>G
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356019
  ensembl transcript: ENST00000367052
  gene symbol: CR1
  hgvsc: ENST00000367052.1:c.5312-29A>G
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356020
  ensembl transcript: ENST00000367053
  gene symbol: CR1
  hgvsc: ENST00000367053.1:c.5312-29A>G
  variant of: http://identifiers.org/hgnc/2334
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9052
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
reference allele: A
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD

1-207789897-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 207789897
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 207789897
    reference: chr 1
allele count: 1
allele frequency: 8.416799932665601e-6
allele num: 118810
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356016
  ensembl transcript: ENST00000367049
  gene symbol: CR1
  hgvsc: ENST00000367049.4:c.6662-23T>C
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000434718
  ensembl transcript: ENST00000529814
  gene symbol: CR1
  hgvsc: ENST00000529814.1:c.1180-23T>C
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000383744
  ensembl transcript: ENST00000400960
  gene symbol: CR1
  hgvsc: ENST00000400960.2:c.5312-23T>C
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356020
  ensembl transcript: ENST00000367053
  gene symbol: CR1
  hgvsc: ENST00000367053.1:c.5312-23T>C
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356018
  ensembl transcript: ENST00000367051
  gene symbol: CR1
  hgvsc: ENST00000367051.1:c.5312-23T>C
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356019
  ensembl transcript: ENST00000367052
  gene symbol: CR1
  hgvsc: ENST00000367052.1:c.5312-23T>C
  variant of: http://identifiers.org/hgnc/2334
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9065
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 131
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3834
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: T
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum

1-207789897-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 207789897
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 207789897
    reference: chr 1
allele count: 8
allele frequency: 6.733439946132481e-5
allele num: 118810
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000434718
  ensembl transcript: ENST00000529814
  gene symbol: CR1
  hgvsc: ENST00000529814.1:c.1180-23T>G
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356018
  ensembl transcript: ENST00000367051
  gene symbol: CR1
  hgvsc: ENST00000367051.1:c.5312-23T>G
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356020
  ensembl transcript: ENST00000367053
  gene symbol: CR1
  hgvsc: ENST00000367053.1:c.5312-23T>G
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356019
  ensembl transcript: ENST00000367052
  gene symbol: CR1
  hgvsc: ENST00000367052.1:c.5312-23T>G
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356016
  ensembl transcript: ENST00000367049
  gene symbol: CR1
  hgvsc: ENST00000367049.4:c.6662-23T>G
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000383744
  ensembl transcript: ENST00000400960
  gene symbol: CR1
  hgvsc: ENST00000400960.2:c.5312-23T>G
  variant of: http://identifiers.org/hgnc/2334
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5220
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9055
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3388
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7266
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8072
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1947
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1272
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7675
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 782
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 932
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9065
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1226
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2255
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1031
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2072
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2274
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3783
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3770
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 131
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 396
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 428
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3834
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
population: Other
population: East Asian
reference allele: T
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD

1-207789903-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 207789903
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 207789903
    reference: chr 1
allele count: 1
allele frequency: 8.380262805041566e-6
allele num: 119328
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000434718
  ensembl transcript: ENST00000529814
  gene symbol: CR1
  hgvsc: ENST00000529814.1:c.1180-17T>A
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356020
  ensembl transcript: ENST00000367053
  gene symbol: CR1
  hgvsc: ENST00000367053.1:c.5312-17T>A
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356016
  ensembl transcript: ENST00000367049
  gene symbol: CR1
  hgvsc: ENST00000367049.4:c.6662-17T>A
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356018
  ensembl transcript: ENST00000367051
  gene symbol: CR1
  hgvsc: ENST00000367051.1:c.5312-17T>A
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356019
  ensembl transcript: ENST00000367052
  gene symbol: CR1
  hgvsc: ENST00000367052.1:c.5312-17T>A
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000383744
  ensembl transcript: ENST00000400960
  gene symbol: CR1
  hgvsc: ENST00000400960.2:c.5312-17T>A
  variant of: http://identifiers.org/hgnc/2334
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5223
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 822
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 697
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 782
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1224
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1944
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7496
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8583
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9132
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3388
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9072
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2255
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7678
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2286
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3929
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28000
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 245
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 357
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3794
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: European (Finnish)
population: Other
population: South Asian
reference allele: T
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: QD

1-207789915-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 207789915
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 207789915
    reference: chr 1
allele count: 1
allele frequency: 8.328058896032513e-6
allele num: 120076
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356018
  ensembl transcript: ENST00000367051
  gene symbol: CR1
  hgvsc: ENST00000367051.1:c.5312-5T>C
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000434718
  ensembl transcript: ENST00000529814
  gene symbol: CR1
  hgvsc: ENST00000529814.1:c.1180-5T>C
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000383744
  ensembl transcript: ENST00000400960
  gene symbol: CR1
  hgvsc: ENST00000400960.2:c.5312-5T>C
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356020
  ensembl transcript: ENST00000367053
  gene symbol: CR1
  hgvsc: ENST00000367053.1:c.5312-5T>C
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356019
  ensembl transcript: ENST00000367052
  gene symbol: CR1
  hgvsc: ENST00000367052.1:c.5312-5T>C
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356016
  ensembl transcript: ENST00000367049
  gene symbol: CR1
  hgvsc: ENST00000367049.4:c.6662-5T>C
  variant of: http://identifiers.org/hgnc/2334
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5224
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7683
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9272
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9232
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 783
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1223
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7767
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1946
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3388
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9085
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2255
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11455
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2126
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3793
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3842
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 4.75e1
  variant carriers: 0
hgvs: c.6662-5T>C
num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
reference allele: T
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/1-207789924-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 207789924
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 207789924
    reference: chr 1
allele count: 1
allele frequency: 8.299995020002988e-6
allele num: 120482
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356018
  ensembl transcript: ENST00000367051
  gene symbol: CR1
  hgvsc: ENST00000367051.1:c.5316C>A
  hgvsp: ENST00000367051.1:c.5316C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356019
  ensembl transcript: ENST00000367052
  gene symbol: CR1
  hgvsc: ENST00000367052.1:c.5316C>A
  hgvsp: ENST00000367052.1:c.5316C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356016
  ensembl transcript: ENST00000367049
  gene symbol: CR1
  hgvsc: ENST00000367049.4:c.6666C>A
  hgvsp: ENST00000367049.4:c.6666C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000383744
  ensembl transcript: ENST00000400960
  gene symbol: CR1
  hgvsc: ENST00000400960.2:c.5316C>A
  hgvsp: ENST00000400960.2:c.5316C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000434718
  ensembl transcript: ENST00000529814
  gene symbol: CR1
  hgvsc: ENST00000529814.1:c.1184C>A
  hgvsp: ENST00000529814.1:c.1184C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356020
  ensembl transcript: ENST00000367053
  gene symbol: CR1
  hgvsc: ENST00000367053.1:c.5316C>A
  hgvsp: ENST00000367053.1:c.5316C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2334
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5225
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3388
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7897
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 783
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7691
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9300
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9506
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9091
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1223
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2255
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1944
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28009
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3798
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2159
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4098
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2314
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Ile2222Ile
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: DP

http://identifiers.org/exac.variant/1-207789937-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 207789937
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 207789937
    reference: chr 1
allele count: 1
allele frequency: 8.286239870071759e-6
allele num: 120682
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000383744
  ensembl transcript: ENST00000400960
  gene symbol: CR1
  hgvsc: ENST00000400960.2:c.5329C>A
  hgvsp: ENSP00000383744.2:p.Pro1777Thr
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356020
  ensembl transcript: ENST00000367053
  gene symbol: CR1
  hgvsc: ENST00000367053.1:c.5329C>A
  hgvsp: ENSP00000356020.1:p.Pro1777Thr
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356018
  ensembl transcript: ENST00000367051
  gene symbol: CR1
  hgvsc: ENST00000367051.1:c.5329C>A
  hgvsp: ENSP00000356018.1:p.Pro1777Thr
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356019
  ensembl transcript: ENST00000367052
  gene symbol: CR1
  hgvsc: ENST00000367052.1:c.5329C>A
  hgvsp: ENSP00000356019.1:p.Pro1777Thr
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000434718
  ensembl transcript: ENST00000529814
  gene symbol: CR1
  hgvsc: ENST00000529814.1:c.1197C>A
  hgvsp: ENSP00000434718.1:p.Pro400Thr
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356016
  ensembl transcript: ENST00000367049
  gene symbol: CR1
  hgvsc: ENST00000367049.4:c.6679C>A
  hgvsp: ENSP00000356016.4:p.Pro2227Thr
  variant of: http://identifiers.org/hgnc/2334
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9537
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5229
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1223
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2256
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1944
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9365
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7698
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 783
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7989
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3388
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9106
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3918
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2326
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28026
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Pro2227Thr
num of homozygotes: 0
population: Other
population: South Asian
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum

1-207789938-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 207789938
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 207789938
    reference: chr 1
allele count: 2
allele frequency: 1.657110661849998e-5
allele num: 120692
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356020
  ensembl transcript: ENST00000367053
  gene symbol: CR1
  hgvsc: ENST00000367053.1:c.5330C>T
  hgvsp: ENSP00000356020.1:p.Pro1777Leu
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356016
  ensembl transcript: ENST00000367049
  gene symbol: CR1
  hgvsc: ENST00000367049.4:c.6680C>T
  hgvsp: ENSP00000356016.4:p.Pro2227Leu
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000434718
  ensembl transcript: ENST00000529814
  gene symbol: CR1
  hgvsc: ENST00000529814.1:c.1198C>T
  hgvsp: ENSP00000434718.1:p.Pro400Leu
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356019
  ensembl transcript: ENST00000367052
  gene symbol: CR1
  hgvsc: ENST00000367052.1:c.5330C>T
  hgvsp: ENSP00000356019.1:p.Pro1777Leu
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356018
  ensembl transcript: ENST00000367051
  gene symbol: CR1
  hgvsc: ENST00000367051.1:c.5330C>T
  hgvsp: ENSP00000356018.1:p.Pro1777Leu
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000383744
  ensembl transcript: ENST00000400960
  gene symbol: CR1
  hgvsc: ENST00000400960.2:c.5330C>T
  hgvsp: ENSP00000383744.2:p.Pro1777Leu
  variant of: http://identifiers.org/hgnc/2334
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5228
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7990
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1944
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1223
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3388
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9371
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9106
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2256
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9536
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 783
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7698
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2185
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3814
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28030
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 3900
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3918
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Pro2227Leu
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Other
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
reference allele: C
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: DP

1-207789947-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 207789947
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 207789947
    reference: chr 1
allele count: 1
allele frequency: 8.28225940036442e-6
allele num: 120740
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356019
  ensembl transcript: ENST00000367052
  gene symbol: CR1
  hgvsc: ENST00000367052.1:c.5339T>C
  hgvsp: ENSP00000356019.1:p.Ile1780Thr
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356016
  ensembl transcript: ENST00000367049
  gene symbol: CR1
  hgvsc: ENST00000367049.4:c.6689T>C
  hgvsp: ENSP00000356016.4:p.Ile2230Thr
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356018
  ensembl transcript: ENST00000367051
  gene symbol: CR1
  hgvsc: ENST00000367051.1:c.5339T>C
  hgvsp: ENSP00000356018.1:p.Ile1780Thr
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000434718
  ensembl transcript: ENST00000529814
  gene symbol: CR1
  hgvsc: ENST00000529814.1:c.1207T>C
  hgvsp: ENSP00000434718.1:p.Ile403Thr
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356020
  ensembl transcript: ENST00000367053
  gene symbol: CR1
  hgvsc: ENST00000367053.1:c.5339T>C
  hgvsp: ENSP00000356020.1:p.Ile1780Thr
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000383744
  ensembl transcript: ENST00000400960
  gene symbol: CR1
  hgvsc: ENST00000400960.2:c.5339T>C
  hgvsp: ENSP00000383744.2:p.Ile1780Thr
  variant of: http://identifiers.org/hgnc/2334
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8021
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1223
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9531
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 784
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7702
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9378
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5228
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9113
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2255
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1945
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3388
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11977
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3815
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3905
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3926
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Ile2230Thr
num of homozygotes: 0
population: South Asian
population: Other
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
reference allele: T
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: DP

http://identifiers.org/exac.variant/1-207789948-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 207789948
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 207789948
    reference: chr 1
allele count: 1
allele frequency: 8.28225940036442e-6
allele num: 120740
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356018
  ensembl transcript: ENST00000367051
  gene symbol: CR1
  hgvsc: ENST00000367051.1:c.5340C>A
  hgvsp: ENST00000367051.1:c.5340C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356020
  ensembl transcript: ENST00000367053
  gene symbol: CR1
  hgvsc: ENST00000367053.1:c.5340C>A
  hgvsp: ENST00000367053.1:c.5340C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000434718
  ensembl transcript: ENST00000529814
  gene symbol: CR1
  hgvsc: ENST00000529814.1:c.1208C>A
  hgvsp: ENST00000529814.1:c.1208C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356019
  ensembl transcript: ENST00000367052
  gene symbol: CR1
  hgvsc: ENST00000367052.1:c.5340C>A
  hgvsp: ENST00000367052.1:c.5340C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356016
  ensembl transcript: ENST00000367049
  gene symbol: CR1
  hgvsc: ENST00000367049.4:c.6690C>A
  hgvsp: ENST00000367049.4:c.6690C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000383744
  ensembl transcript: ENST00000400960
  gene symbol: CR1
  hgvsc: ENST00000400960.2:c.5340C>A
  hgvsp: ENST00000400960.2:c.5340C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2334
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8022
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7702
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1223
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1945
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9530
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9380
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5228
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3389
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2255
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9112
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 783
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4156
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3905
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2191
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Ile2230Ile
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: East Asian
population: Latino
population: South Asian
population: African
reference allele: C
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum

1-207789949-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 207789949
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 207789949
    reference: chr 1
allele count: 1
allele frequency: 8.282122210995345e-6
allele num: 120742
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356019
  ensembl transcript: ENST00000367052
  gene symbol: CR1
  hgvsc: ENST00000367052.1:c.5341C>T
  hgvsp: ENSP00000356019.1:p.Leu1781Phe
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356018
  ensembl transcript: ENST00000367051
  gene symbol: CR1
  hgvsc: ENST00000367051.1:c.5341C>T
  hgvsp: ENSP00000356018.1:p.Leu1781Phe
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356020
  ensembl transcript: ENST00000367053
  gene symbol: CR1
  hgvsc: ENST00000367053.1:c.5341C>T
  hgvsp: ENSP00000356020.1:p.Leu1781Phe
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000434718
  ensembl transcript: ENST00000529814
  gene symbol: CR1
  hgvsc: ENST00000529814.1:c.1209C>T
  hgvsp: ENSP00000434718.1:p.Leu404Phe
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000383744
  ensembl transcript: ENST00000400960
  gene symbol: CR1
  hgvsc: ENST00000400960.2:c.5341C>T
  hgvsp: ENSP00000383744.2:p.Leu1781Phe
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356016
  ensembl transcript: ENST00000367049
  gene symbol: CR1
  hgvsc: ENST00000367049.4:c.6691C>T
  hgvsp: ENSP00000356016.4:p.Leu2231Phe
  variant of: http://identifiers.org/hgnc/2334
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8024
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2256
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 783
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9529
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3389
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9379
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9111
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1223
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5228
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7704
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1945
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3925
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3908
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4154
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3815
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2191
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Leu2231Phe
num of homozygotes: 0
population: Latino
population: African
population: Other
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD

1-207789954-TG-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 207789954
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 207789953
    reference: chr 1
allele count: 2
allele frequency: 1.656369569178275e-5
allele num: 120746
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000434718
  ensembl transcript: ENST00000529814
  gene symbol: CR1
  hgvsc: ENST00000529814.1:c.1217delG
  hgvsp: ENSP00000434718.1:p.Arg407AspfsTer28
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356020
  ensembl transcript: ENST00000367053
  gene symbol: CR1
  hgvsc: ENST00000367053.1:c.5349delG
  hgvsp: ENSP00000356020.1:p.Arg1784AspfsTer28
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356016
  ensembl transcript: ENST00000367049
  gene symbol: CR1
  hgvsc: ENST00000367049.4:c.6699delG
  hgvsp: ENSP00000356016.4:p.Arg2234AspfsTer28
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356019
  ensembl transcript: ENST00000367052
  gene symbol: CR1
  hgvsc: ENST00000367052.1:c.5349delG
  hgvsp: ENSP00000356019.1:p.Arg1784AspfsTer28
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356018
  ensembl transcript: ENST00000367051
  gene symbol: CR1
  hgvsc: ENST00000367051.1:c.5349delG
  hgvsp: ENSP00000356018.1:p.Arg1784AspfsTer28
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000383744
  ensembl transcript: ENST00000400960
  gene symbol: CR1
  hgvsc: ENST00000400960.2:c.5349delG
  hgvsp: ENSP00000383744.2:p.Arg1784AspfsTer28
  variant of: http://identifiers.org/hgnc/2334
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL96.00to97.00
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9112
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9380
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9528
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8027
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 783
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7705
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1945
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1223
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2258
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3389
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5228
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28039
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3908
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4152
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Arg2234AspfsTer28
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Other
population: East Asian
population: South Asian
reference allele: TG
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum

1-207789955-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 207789955
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 207789955
    reference: chr 1
allele count: 1
allele frequency: 8.281847845891375e-6
allele num: 120746
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000383744
  ensembl transcript: ENST00000400960
  gene symbol: CR1
  hgvsc: ENST00000400960.2:c.5347G>A
  hgvsp: ENSP00000383744.2:p.Gly1783Arg
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356020
  ensembl transcript: ENST00000367053
  gene symbol: CR1
  hgvsc: ENST00000367053.1:c.5347G>A
  hgvsp: ENSP00000356020.1:p.Gly1783Arg
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356016
  ensembl transcript: ENST00000367049
  gene symbol: CR1
  hgvsc: ENST00000367049.4:c.6697G>A
  hgvsp: ENSP00000356016.4:p.Gly2233Arg
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356018
  ensembl transcript: ENST00000367051
  gene symbol: CR1
  hgvsc: ENST00000367051.1:c.5347G>A
  hgvsp: ENSP00000356018.1:p.Gly1783Arg
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356019
  ensembl transcript: ENST00000367052
  gene symbol: CR1
  hgvsc: ENST00000367052.1:c.5347G>A
  hgvsp: ENSP00000356019.1:p.Gly1783Arg
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000434718
  ensembl transcript: ENST00000529814
  gene symbol: CR1
  hgvsc: ENST00000529814.1:c.1215G>A
  hgvsp: ENSP00000434718.1:p.Gly406Arg
  variant of: http://identifiers.org/hgnc/2334
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1945
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7706
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 783
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9531
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5228
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9109
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8027
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9383
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2257
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3389
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1223
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11995
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2333
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4152
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3907
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3926
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Gly2233Arg
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
population: Other
population: East Asian
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: QD

1-207789965-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 207789965
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 207789965
    reference: chr 1
allele count: 1
allele frequency: 8.281024859636628e-6
allele num: 120758
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000434718
  ensembl transcript: ENST00000529814
  gene symbol: CR1
  hgvsc: ENST00000529814.1:c.1225C>T
  hgvsp: ENSP00000434718.1:p.Thr409Ile
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000383744
  ensembl transcript: ENST00000400960
  gene symbol: CR1
  hgvsc: ENST00000400960.2:c.5357C>T
  hgvsp: ENSP00000383744.2:p.Thr1786Ile
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356016
  ensembl transcript: ENST00000367049
  gene symbol: CR1
  hgvsc: ENST00000367049.4:c.6707C>T
  hgvsp: ENSP00000356016.4:p.Thr2236Ile
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356018
  ensembl transcript: ENST00000367051
  gene symbol: CR1
  hgvsc: ENST00000367051.1:c.5357C>T
  hgvsp: ENSP00000356018.1:p.Thr1786Ile
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356020
  ensembl transcript: ENST00000367053
  gene symbol: CR1
  hgvsc: ENST00000367053.1:c.5357C>T
  hgvsp: ENSP00000356020.1:p.Thr1786Ile
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356019
  ensembl transcript: ENST00000367052
  gene symbol: CR1
  hgvsc: ENST00000367052.1:c.5357C>T
  hgvsp: ENSP00000356019.1:p.Thr1786Ile
  variant of: http://identifiers.org/hgnc/2334
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7704
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1945
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1223
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 784
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8029
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9532
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3390
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2257
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5228
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9388
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9110
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3816
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11998
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2190
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2335
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Thr2236Ile
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: DP

1-207789968-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 207789968
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 207789968
    reference: chr 1
allele count: 1
allele frequency: 8.280750567231414e-6
allele num: 120762
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000434718
  ensembl transcript: ENST00000529814
  gene symbol: CR1
  hgvsc: ENST00000529814.1:c.1228G>A
  hgvsp: ENSP00000434718.1:p.Gly410Glu
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356020
  ensembl transcript: ENST00000367053
  gene symbol: CR1
  hgvsc: ENST00000367053.1:c.5360G>A
  hgvsp: ENSP00000356020.1:p.Gly1787Glu
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356019
  ensembl transcript: ENST00000367052
  gene symbol: CR1
  hgvsc: ENST00000367052.1:c.5360G>A
  hgvsp: ENSP00000356019.1:p.Gly1787Glu
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356016
  ensembl transcript: ENST00000367049
  gene symbol: CR1
  hgvsc: ENST00000367049.4:c.6710G>A
  hgvsp: ENSP00000356016.4:p.Gly2237Glu
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000383744
  ensembl transcript: ENST00000400960
  gene symbol: CR1
  hgvsc: ENST00000400960.2:c.5360G>A
  hgvsp: ENSP00000383744.2:p.Gly1787Glu
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356018
  ensembl transcript: ENST00000367051
  gene symbol: CR1
  hgvsc: ENST00000367051.1:c.5360G>A
  hgvsp: ENSP00000356018.1:p.Gly1787Glu
  variant of: http://identifiers.org/hgnc/2334
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 784
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7704
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9386
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9111
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9532
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3390
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8031
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1945
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2257
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5229
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1223
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3817
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2335
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28040
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Gly2237Glu
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: DP

http://identifiers.org/exac.variant/1-207789970-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 207789970
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 207789970
    reference: chr 1
allele count: 2
allele frequency: 1.656150113446283e-5
allele num: 120762
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356020
  ensembl transcript: ENST00000367053
  gene symbol: CR1
  hgvsc: ENST00000367053.1:c.5362A>C
  hgvsp: ENSP00000356020.1:p.Thr1788Pro
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356016
  ensembl transcript: ENST00000367049
  gene symbol: CR1
  hgvsc: ENST00000367049.4:c.6712A>C
  hgvsp: ENSP00000356016.4:p.Thr2238Pro
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356018
  ensembl transcript: ENST00000367051
  gene symbol: CR1
  hgvsc: ENST00000367051.1:c.5362A>C
  hgvsp: ENSP00000356018.1:p.Thr1788Pro
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000383744
  ensembl transcript: ENST00000400960
  gene symbol: CR1
  hgvsc: ENST00000400960.2:c.5362A>C
  hgvsp: ENSP00000383744.2:p.Thr1788Pro
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000434718
  ensembl transcript: ENST00000529814
  gene symbol: CR1
  hgvsc: ENST00000529814.1:c.1230A>C
  hgvsp: ENSP00000434718.1:p.Thr411Pro
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356019
  ensembl transcript: ENST00000367052
  gene symbol: CR1
  hgvsc: ENST00000367052.1:c.5362A>C
  hgvsp: ENSP00000356019.1:p.Thr1788Pro
  variant of: http://identifiers.org/hgnc/2334
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9532
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1223
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5228
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1945
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9386
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9110
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3390
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2258
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 784
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8031
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7705
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2190
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3909
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Thr2238Pro
num of homozygotes: 0
population: South Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Other
population: Latino
reference allele: A
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum

1-207789973-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 207789973
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 207789973
    reference: chr 1
allele count: 1
allele frequency: 8.280613427842734e-6
allele num: 120764
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356016
  ensembl transcript: ENST00000367049
  gene symbol: CR1
  hgvsc: ENST00000367049.4:c.6715C>T
  hgvsp: ENSP00000356016.4:p.Pro2239Ser
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000434718
  ensembl transcript: ENST00000529814
  gene symbol: CR1
  hgvsc: ENST00000529814.1:c.1233C>T
  hgvsp: ENSP00000434718.1:p.Pro412Ser
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356019
  ensembl transcript: ENST00000367052
  gene symbol: CR1
  hgvsc: ENST00000367052.1:c.5365C>T
  hgvsp: ENSP00000356019.1:p.Pro1789Ser
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000383744
  ensembl transcript: ENST00000400960
  gene symbol: CR1
  hgvsc: ENST00000400960.2:c.5365C>T
  hgvsp: ENSP00000383744.2:p.Pro1789Ser
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356020
  ensembl transcript: ENST00000367053
  gene symbol: CR1
  hgvsc: ENST00000367053.1:c.5365C>T
  hgvsp: ENSP00000356020.1:p.Pro1789Ser
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356018
  ensembl transcript: ENST00000367051
  gene symbol: CR1
  hgvsc: ENST00000367051.1:c.5365C>T
  hgvsp: ENSP00000356018.1:p.Pro1789Ser
  variant of: http://identifiers.org/hgnc/2334
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9530
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5227
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1224
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1945
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9386
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2258
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3390
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 784
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7705
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8034
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9110
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3817
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3928
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4156
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2335
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Pro2239Ser
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: South Asian
population: African
population: European (Non-Finnish)
population: Other
population: Latino
reference allele: C
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff

1-207789974-CCTTT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 207789974
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 207789970
    reference: chr 1
allele count: 1
allele frequency: 8.280613427842734e-6
allele num: 120764
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356018
  ensembl transcript: ENST00000367051
  gene symbol: CR1
  hgvsc: ENST00000367051.1:c.5367_5370delCTTT
  hgvsp: ENSP00000356018.1:p.Phe1790GlufsTer21
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356019
  ensembl transcript: ENST00000367052
  gene symbol: CR1
  hgvsc: ENST00000367052.1:c.5367_5370delCTTT
  hgvsp: ENSP00000356019.1:p.Phe1790GlufsTer21
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000383744
  ensembl transcript: ENST00000400960
  gene symbol: CR1
  hgvsc: ENST00000400960.2:c.5367_5370delCTTT
  hgvsp: ENSP00000383744.2:p.Phe1790GlufsTer21
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356016
  ensembl transcript: ENST00000367049
  gene symbol: CR1
  hgvsc: ENST00000367049.4:c.6717_6720delCTTT
  hgvsp: ENSP00000356016.4:p.Phe2240GlufsTer21
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000434718
  ensembl transcript: ENST00000529814
  gene symbol: CR1
  hgvsc: ENST00000529814.1:c.1235_1238delCTTT
  hgvsp: ENSP00000434718.1:p.Phe413GlufsTer21
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356020
  ensembl transcript: ENST00000367053
  gene symbol: CR1
  hgvsc: ENST00000367053.1:c.5367_5370delCTTT
  hgvsp: ENSP00000356020.1:p.Phe1790GlufsTer21
  variant of: http://identifiers.org/hgnc/2334
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2258
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5227
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8034
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9112
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1224
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9385
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1945
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7705
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9529
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3390
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 784
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3910
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11999
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3817
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4156
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Phe2240GlufsTer21
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: South Asian
reference allele: CCTTT
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: MQRankSum

1-207789975-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 207789975
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 207789975
    reference: chr 1
allele count: 4
allele frequency: 3.312300226892566e-5
allele num: 120762
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356018
  ensembl transcript: ENST00000367051
  gene symbol: CR1
  hgvsc: ENST00000367051.1:c.5367C>T
  hgvsp: ENST00000367051.1:c.5367C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000383744
  ensembl transcript: ENST00000400960
  gene symbol: CR1
  hgvsc: ENST00000400960.2:c.5367C>T
  hgvsp: ENST00000400960.2:c.5367C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356020
  ensembl transcript: ENST00000367053
  gene symbol: CR1
  hgvsc: ENST00000367053.1:c.5367C>T
  hgvsp: ENST00000367053.1:c.5367C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356016
  ensembl transcript: ENST00000367049
  gene symbol: CR1
  hgvsc: ENST00000367049.4:c.6717C>T
  hgvsp: ENST00000367049.4:c.6717C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000434718
  ensembl transcript: ENST00000529814
  gene symbol: CR1
  hgvsc: ENST00000529814.1:c.1235C>T
  hgvsp: ENST00000529814.1:c.1235C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356019
  ensembl transcript: ENST00000367052
  gene symbol: CR1
  hgvsc: ENST00000367052.1:c.5367C>T
  hgvsp: ENST00000367052.1:c.5367C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2334
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1945
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8035
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9385
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1224
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7705
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9528
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9110
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 783
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3390
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5228
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2259
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4156
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2335
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3929
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Pro2239Pro
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: Latino
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: DP

1-207789982-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 207789982
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 207789982
    reference: chr 1
allele count: 1
allele frequency: 8.280476292996373e-6
allele num: 120766
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000434718
  ensembl transcript: ENST00000529814
  gene symbol: CR1
  hgvsc: ENST00000529814.1:c.1242G>T
  hgvsp: ENSP00000434718.1:p.Asp415Tyr
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000383744
  ensembl transcript: ENST00000400960
  gene symbol: CR1
  hgvsc: ENST00000400960.2:c.5374G>T
  hgvsp: ENSP00000383744.2:p.Asp1792Tyr
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356019
  ensembl transcript: ENST00000367052
  gene symbol: CR1
  hgvsc: ENST00000367052.1:c.5374G>T
  hgvsp: ENSP00000356019.1:p.Asp1792Tyr
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356016
  ensembl transcript: ENST00000367049
  gene symbol: CR1
  hgvsc: ENST00000367049.4:c.6724G>T
  hgvsp: ENSP00000356016.4:p.Asp2242Tyr
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356020
  ensembl transcript: ENST00000367053
  gene symbol: CR1
  hgvsc: ENST00000367053.1:c.5374G>T
  hgvsp: ENSP00000356020.1:p.Asp1792Tyr
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356018
  ensembl transcript: ENST00000367051
  gene symbol: CR1
  hgvsc: ENST00000367051.1:c.5374G>T
  hgvsp: ENSP00000356018.1:p.Asp1792Tyr
  variant of: http://identifiers.org/hgnc/2334
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1945
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 784
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9527
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9110
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5228
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9384
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7706
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3390
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8037
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2257
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1225
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3910
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3929
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12000
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Asp2242Tyr
num of homozygotes: 0
population: East Asian
population: South Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
reference allele: G
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP

1-207789983-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 207789983
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 207789983
    reference: chr 1
allele count: 3
allele frequency: 2.484142887898912e-5
allele num: 120766
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356016
  ensembl transcript: ENST00000367049
  gene symbol: CR1
  hgvsc: ENST00000367049.4:c.6725A>G
  hgvsp: ENSP00000356016.4:p.Asp2242Gly
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000383744
  ensembl transcript: ENST00000400960
  gene symbol: CR1
  hgvsc: ENST00000400960.2:c.5375A>G
  hgvsp: ENSP00000383744.2:p.Asp1792Gly
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356018
  ensembl transcript: ENST00000367051
  gene symbol: CR1
  hgvsc: ENST00000367051.1:c.5375A>G
  hgvsp: ENSP00000356018.1:p.Asp1792Gly
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356020
  ensembl transcript: ENST00000367053
  gene symbol: CR1
  hgvsc: ENST00000367053.1:c.5375A>G
  hgvsp: ENSP00000356020.1:p.Asp1792Gly
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356019
  ensembl transcript: ENST00000367052
  gene symbol: CR1
  hgvsc: ENST00000367052.1:c.5375A>G
  hgvsp: ENSP00000356019.1:p.Asp1792Gly
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000434718
  ensembl transcript: ENST00000529814
  gene symbol: CR1
  hgvsc: ENST00000529814.1:c.1243A>G
  hgvsp: ENSP00000434718.1:p.Asp415Gly
  variant of: http://identifiers.org/hgnc/2334
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5227
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2260
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1945
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9528
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9109
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8036
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1225
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 784
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7706
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9384
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3390
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3929
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12001
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3909
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2334
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Asp2242Gly
num of homozygotes: 0
population: African
population: Other
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: A
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP

1-207790000-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 207790000
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 207790000
    reference: chr 1
allele count: 1
allele frequency: 8.280476292996373e-6
allele num: 120766
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000383744
  ensembl transcript: ENST00000400960
  gene symbol: CR1
  hgvsc: ENST00000400960.2:c.5392G>T
  hgvsp: ENSP00000383744.2:p.Glu1798Ter
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356016
  ensembl transcript: ENST00000367049
  gene symbol: CR1
  hgvsc: ENST00000367049.4:c.6742G>T
  hgvsp: ENSP00000356016.4:p.Glu2248Ter
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356018
  ensembl transcript: ENST00000367051
  gene symbol: CR1
  hgvsc: ENST00000367051.1:c.5392G>T
  hgvsp: ENSP00000356018.1:p.Glu1798Ter
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356019
  ensembl transcript: ENST00000367052
  gene symbol: CR1
  hgvsc: ENST00000367052.1:c.5392G>T
  hgvsp: ENSP00000356019.1:p.Glu1798Ter
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000434718
  ensembl transcript: ENST00000529814
  gene symbol: CR1
  hgvsc: ENST00000529814.1:c.1260G>T
  hgvsp: ENSP00000434718.1:p.Glu421Ter
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356020
  ensembl transcript: ENST00000367053
  gene symbol: CR1
  hgvsc: ENST00000367053.1:c.5392G>T
  hgvsp: ENSP00000356020.1:p.Glu1798Ter
  variant of: http://identifiers.org/hgnc/2334
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9110
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9525
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1225
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5227
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7706
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8039
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1945
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9385
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 784
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2258
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3390
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4159
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12004
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Glu2248Ter
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: Other
population: South Asian
population: African
population: East Asian
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD

1-207790004-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 207790004
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 207790004
    reference: chr 1
allele count: 2
allele frequency: 1.656095258599275e-5
allele num: 120766
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356016
  ensembl transcript: ENST00000367049
  gene symbol: CR1
  hgvsc: ENST00000367049.4:c.6746T>A
  hgvsp: ENSP00000356016.4:p.Ile2249Lys
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356020
  ensembl transcript: ENST00000367053
  gene symbol: CR1
  hgvsc: ENST00000367053.1:c.5396T>A
  hgvsp: ENSP00000356020.1:p.Ile1799Lys
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000383744
  ensembl transcript: ENST00000400960
  gene symbol: CR1
  hgvsc: ENST00000400960.2:c.5396T>A
  hgvsp: ENSP00000383744.2:p.Ile1799Lys
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000434718
  ensembl transcript: ENST00000529814
  gene symbol: CR1
  hgvsc: ENST00000529814.1:c.1264T>A
  hgvsp: ENSP00000434718.1:p.Ile422Lys
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356019
  ensembl transcript: ENST00000367052
  gene symbol: CR1
  hgvsc: ENST00000367052.1:c.5396T>A
  hgvsp: ENSP00000356019.1:p.Ile1799Lys
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356018
  ensembl transcript: ENST00000367051
  gene symbol: CR1
  hgvsc: ENST00000367051.1:c.5396T>A
  hgvsp: ENSP00000356018.1:p.Ile1799Lys
  variant of: http://identifiers.org/hgnc/2334
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5227
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9110
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1225
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1945
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8037
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9526
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2260
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7706
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9383
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 784
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3391
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12001
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3929
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3908
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ile2249Lys
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
population: South Asian
population: African
population: European (Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD

1-207790008-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 207790008
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 207790008
    reference: chr 1
allele count: 1
allele frequency: 8.280476292996373e-6
allele num: 120766
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000383744
  ensembl transcript: ENST00000400960
  gene symbol: CR1
  hgvsc: ENST00000400960.2:c.5400T>G
  hgvsp: ENST00000400960.2:c.5400T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356020
  ensembl transcript: ENST00000367053
  gene symbol: CR1
  hgvsc: ENST00000367053.1:c.5400T>G
  hgvsp: ENST00000367053.1:c.5400T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356016
  ensembl transcript: ENST00000367049
  gene symbol: CR1
  hgvsc: ENST00000367049.4:c.6750T>G
  hgvsp: ENST00000367049.4:c.6750T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000434718
  ensembl transcript: ENST00000529814
  gene symbol: CR1
  hgvsc: ENST00000529814.1:c.1268T>G
  hgvsp: ENST00000529814.1:c.1268T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356019
  ensembl transcript: ENST00000367052
  gene symbol: CR1
  hgvsc: ENST00000367052.1:c.5400T>G
  hgvsp: ENST00000367052.1:c.5400T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356018
  ensembl transcript: ENST00000367051
  gene symbol: CR1
  hgvsc: ENST00000367051.1:c.5400T>G
  hgvsp: ENST00000367051.1:c.5400T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/2334
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3391
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8037
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7707
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 784
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9524
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9383
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5227
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1225
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9110
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1945
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2261
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2335
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3929
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2189
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Ser2250Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Latino
population: African
population: Other
population: European (Finnish)
reference allele: T
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum

1-207790011-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 207790011
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 207790011
    reference: chr 1
allele count: 9
allele frequency: 7.452428663696736e-5
allele num: 120766
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356016
  ensembl transcript: ENST00000367049
  gene symbol: CR1
  hgvsc: ENST00000367049.4:c.6753C>T
  hgvsp: ENST00000367049.4:c.6753C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356018
  ensembl transcript: ENST00000367051
  gene symbol: CR1
  hgvsc: ENST00000367051.1:c.5403C>T
  hgvsp: ENST00000367051.1:c.5403C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356019
  ensembl transcript: ENST00000367052
  gene symbol: CR1
  hgvsc: ENST00000367052.1:c.5403C>T
  hgvsp: ENST00000367052.1:c.5403C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000434718
  ensembl transcript: ENST00000529814
  gene symbol: CR1
  hgvsc: ENST00000529814.1:c.1271C>T
  hgvsp: ENST00000529814.1:c.1271C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356020
  ensembl transcript: ENST00000367053
  gene symbol: CR1
  hgvsc: ENST00000367053.1:c.5403C>T
  hgvsp: ENST00000367053.1:c.5403C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000383744
  ensembl transcript: ENST00000400960
  gene symbol: CR1
  hgvsc: ENST00000400960.2:c.5403C>T
  hgvsp: ENST00000400960.2:c.5403C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2334
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7704
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9383
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1944
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1225
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9524
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2269
  bin: 9.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9111
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 784
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5227
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3389
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8035
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3817
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3929
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3908
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4158
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2189
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Tyr2251Tyr
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
population: European (Finnish)
population: Other
population: South Asian
reference allele: C
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum

1-207790012-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 207790012
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 207790012
    reference: chr 1
allele count: 8
allele frequency: 6.624381034397098e-5
allele num: 120766
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356019
  ensembl transcript: ENST00000367052
  gene symbol: CR1
  hgvsc: ENST00000367052.1:c.5404G>A
  hgvsp: ENSP00000356019.1:p.Ala1802Thr
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356016
  ensembl transcript: ENST00000367049
  gene symbol: CR1
  hgvsc: ENST00000367049.4:c.6754G>A
  hgvsp: ENSP00000356016.4:p.Ala2252Thr
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356018
  ensembl transcript: ENST00000367051
  gene symbol: CR1
  hgvsc: ENST00000367051.1:c.5404G>A
  hgvsp: ENSP00000356018.1:p.Ala1802Thr
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000434718
  ensembl transcript: ENST00000529814
  gene symbol: CR1
  hgvsc: ENST00000529814.1:c.1272G>A
  hgvsp: ENSP00000434718.1:p.Ala425Thr
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356020
  ensembl transcript: ENST00000367053
  gene symbol: CR1
  hgvsc: ENST00000367053.1:c.5404G>A
  hgvsp: ENSP00000356020.1:p.Ala1802Thr
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000383744
  ensembl transcript: ENST00000400960
  gene symbol: CR1
  hgvsc: ENST00000400960.2:c.5404G>A
  hgvsp: ENSP00000383744.2:p.Ala1802Thr
  variant of: http://identifiers.org/hgnc/2334
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9384
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9109
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5229
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9520
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3389
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1225
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7704
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8034
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 785
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1944
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2271
  bin: 9.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2336
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11996
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2189
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4158
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Ala2252Thr
num of homozygotes: 0
population: Latino
population: South Asian
population: Other
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
reference allele: G
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: MQ

1-207790012-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 207790012
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 207790012
    reference: chr 1
allele count: 2
allele frequency: 1.656095258599275e-5
allele num: 120766
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356016
  ensembl transcript: ENST00000367049
  gene symbol: CR1
  hgvsc: ENST00000367049.4:c.6754G>C
  hgvsp: ENSP00000356016.4:p.Ala2252Pro
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000383744
  ensembl transcript: ENST00000400960
  gene symbol: CR1
  hgvsc: ENST00000400960.2:c.5404G>C
  hgvsp: ENSP00000383744.2:p.Ala1802Pro
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356020
  ensembl transcript: ENST00000367053
  gene symbol: CR1
  hgvsc: ENST00000367053.1:c.5404G>C
  hgvsp: ENSP00000356020.1:p.Ala1802Pro
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356019
  ensembl transcript: ENST00000367052
  gene symbol: CR1
  hgvsc: ENST00000367052.1:c.5404G>C
  hgvsp: ENSP00000356019.1:p.Ala1802Pro
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356018
  ensembl transcript: ENST00000367051
  gene symbol: CR1
  hgvsc: ENST00000367051.1:c.5404G>C
  hgvsp: ENSP00000356018.1:p.Ala1802Pro
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000434718
  ensembl transcript: ENST00000529814
  gene symbol: CR1
  hgvsc: ENST00000529814.1:c.1272G>C
  hgvsp: ENSP00000434718.1:p.Ala425Pro
  variant of: http://identifiers.org/hgnc/2334
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 785
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9520
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1944
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9384
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1225
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9109
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3389
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2271
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7704
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8034
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5229
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2336
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11996
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2189
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Ala2252Pro
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: European (Non-Finnish)
population: Other
population: Latino
population: East Asian
reference allele: G
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ

1-207790017-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 207790017
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 207790017
    reference: chr 1
allele count: 4
allele frequency: 3.312245371137094e-5
allele num: 120764
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356019
  ensembl transcript: ENST00000367052
  gene symbol: CR1
  hgvsc: ENST00000367052.1:c.5409C>T
  hgvsp: ENST00000367052.1:c.5409C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000383744
  ensembl transcript: ENST00000400960
  gene symbol: CR1
  hgvsc: ENST00000400960.2:c.5409C>T
  hgvsp: ENST00000400960.2:c.5409C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000434718
  ensembl transcript: ENST00000529814
  gene symbol: CR1
  hgvsc: ENST00000529814.1:c.1277C>T
  hgvsp: ENST00000529814.1:c.1277C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356016
  ensembl transcript: ENST00000367049
  gene symbol: CR1
  hgvsc: ENST00000367049.4:c.6759C>T
  hgvsp: ENST00000367049.4:c.6759C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356020
  ensembl transcript: ENST00000367053
  gene symbol: CR1
  hgvsc: ENST00000367053.1:c.5409C>T
  hgvsp: ENST00000367053.1:c.5409C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356018
  ensembl transcript: ENST00000367051
  gene symbol: CR1
  hgvsc: ENST00000367051.1:c.5409C>T
  hgvsp: ENST00000367051.1:c.5409C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2334
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9111
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 785
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3389
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5228
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9518
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7703
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1225
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9387
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1944
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2269
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8034
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4160
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2190
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2336
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28044
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Cys2253Cys
num of homozygotes: 0
population: African
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: East Asian
reference allele: C
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: DP

1-207790018-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 207790018
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 207790018
    reference: chr 1
allele count: 141
allele frequency: 1.167547157312489e-3
allele num: 120766
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000383744
  ensembl transcript: ENST00000400960
  gene symbol: CR1
  hgvsc: ENST00000400960.2:c.5410G>A
  hgvsp: ENSP00000383744.2:p.Asp1804Asn
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356020
  ensembl transcript: ENST00000367053
  gene symbol: CR1
  hgvsc: ENST00000367053.1:c.5410G>A
  hgvsp: ENSP00000356020.1:p.Asp1804Asn
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356018
  ensembl transcript: ENST00000367051
  gene symbol: CR1
  hgvsc: ENST00000367051.1:c.5410G>A
  hgvsp: ENSP00000356018.1:p.Asp1804Asn
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356019
  ensembl transcript: ENST00000367052
  gene symbol: CR1
  hgvsc: ENST00000367052.1:c.5410G>A
  hgvsp: ENSP00000356019.1:p.Asp1804Asn
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000434718
  ensembl transcript: ENST00000529814
  gene symbol: CR1
  hgvsc: ENST00000529814.1:c.1278G>A
  hgvsp: ENSP00000434718.1:p.Asp427Asn
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356016
  ensembl transcript: ENST00000367049
  gene symbol: CR1
  hgvsc: ENST00000367049.4:c.6760G>A
  hgvsp: ENSP00000356016.4:p.Asp2254Asn
  variant of: http://identifiers.org/hgnc/2334
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5219
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2382
  bin: 9.75e1
  variant carriers: 129
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1220
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9372
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3383
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 8.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8022
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1939
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9091
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 780
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9495
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7686
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11980
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4145
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28103
  bin: 9.75e1
  variant carriers: 141
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2333
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Asp2254Asn
num of homozygotes: 0
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Latino
population: African
population: East Asian
reference allele: G
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: QD

1-207790026-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 207790026
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 207790026
    reference: chr 1
allele count: 1
allele frequency: 8.280339162692104e-6
allele num: 120768
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356020
  ensembl transcript: ENST00000367053
  gene symbol: CR1
  hgvsc: ENST00000367053.1:c.5418C>T
  hgvsp: ENST00000367053.1:c.5418C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356016
  ensembl transcript: ENST00000367049
  gene symbol: CR1
  hgvsc: ENST00000367049.4:c.6768C>T
  hgvsp: ENST00000367049.4:c.6768C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356018
  ensembl transcript: ENST00000367051
  gene symbol: CR1
  hgvsc: ENST00000367051.1:c.5418C>T
  hgvsp: ENST00000367051.1:c.5418C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356019
  ensembl transcript: ENST00000367052
  gene symbol: CR1
  hgvsc: ENST00000367052.1:c.5418C>T
  hgvsp: ENST00000367052.1:c.5418C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000434718
  ensembl transcript: ENST00000529814
  gene symbol: CR1
  hgvsc: ENST00000529814.1:c.1286C>T
  hgvsp: ENST00000529814.1:c.1286C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000383744
  ensembl transcript: ENST00000400960
  gene symbol: CR1
  hgvsc: ENST00000400960.2:c.5418C>T
  hgvsp: ENST00000400960.2:c.5418C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2334
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5231
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9499
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8031
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1948
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1225
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9383
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7709
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3392
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 782
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9101
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2288
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11993
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3905
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4152
  bin: 6.75e1
  variant carriers: 0
hgvs: p.His2256His
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
population: East Asian
population: South Asian
population: Latino
reference allele: C
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum

1-207790030-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 207790030
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 207790030
    reference: chr 1
allele count: 4
allele frequency: 3.312190517198549e-5
allele num: 120766
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356018
  ensembl transcript: ENST00000367051
  gene symbol: CR1
  hgvsc: ENST00000367051.1:c.5422G>A
  hgvsp: ENSP00000356018.1:p.Asp1808Asn
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000383744
  ensembl transcript: ENST00000400960
  gene symbol: CR1
  hgvsc: ENST00000400960.2:c.5422G>A
  hgvsp: ENSP00000383744.2:p.Asp1808Asn
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356019
  ensembl transcript: ENST00000367052
  gene symbol: CR1
  hgvsc: ENST00000367052.1:c.5422G>A
  hgvsp: ENSP00000356019.1:p.Asp1808Asn
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356020
  ensembl transcript: ENST00000367053
  gene symbol: CR1
  hgvsc: ENST00000367053.1:c.5422G>A
  hgvsp: ENSP00000356020.1:p.Asp1808Asn
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356016
  ensembl transcript: ENST00000367049
  gene symbol: CR1
  hgvsc: ENST00000367049.4:c.6772G>A
  hgvsp: ENSP00000356016.4:p.Asp2258Asn
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000434718
  ensembl transcript: ENST00000529814
  gene symbol: CR1
  hgvsc: ENST00000529814.1:c.1290G>A
  hgvsp: ENSP00000434718.1:p.Asp431Asn
  variant of: http://identifiers.org/hgnc/2334
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9100
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5230
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1225
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 782
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3392
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7709
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9498
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9383
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2291
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1948
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8031
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3905
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11994
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3931
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4151
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Asp2258Asn
num of homozygotes: 0
population: African
population: Other
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD

1-207790033-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 207790033
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 207790033
    reference: chr 1
allele count: 1
allele frequency: 8.280476292996373e-6
allele num: 120766
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356019
  ensembl transcript: ENST00000367052
  gene symbol: CR1
  hgvsc: ENST00000367052.1:c.5425A>G
  hgvsp: ENSP00000356019.1:p.Arg1809Gly
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000383744
  ensembl transcript: ENST00000400960
  gene symbol: CR1
  hgvsc: ENST00000400960.2:c.5425A>G
  hgvsp: ENSP00000383744.2:p.Arg1809Gly
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356018
  ensembl transcript: ENST00000367051
  gene symbol: CR1
  hgvsc: ENST00000367051.1:c.5425A>G
  hgvsp: ENSP00000356018.1:p.Arg1809Gly
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000434718
  ensembl transcript: ENST00000529814
  gene symbol: CR1
  hgvsc: ENST00000529814.1:c.1293A>G
  hgvsp: ENSP00000434718.1:p.Arg432Gly
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356016
  ensembl transcript: ENST00000367049
  gene symbol: CR1
  hgvsc: ENST00000367049.4:c.6775A>G
  hgvsp: ENSP00000356016.4:p.Arg2259Gly
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356020
  ensembl transcript: ENST00000367053
  gene symbol: CR1
  hgvsc: ENST00000367053.1:c.5425A>G
  hgvsp: ENSP00000356020.1:p.Arg1809Gly
  variant of: http://identifiers.org/hgnc/2334
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1948
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9383
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1225
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7709
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9100
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5229
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3392
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 782
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9498
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8031
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2292
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3816
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11993
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4151
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2337
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Arg2259Gly
num of homozygotes: 0
population: Latino
population: African
population: Other
population: South Asian
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: A
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: DP

1-207790034-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 207790034
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 207790034
    reference: chr 1
allele count: 1
allele frequency: 8.280476292996373e-6
allele num: 120766
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356018
  ensembl transcript: ENST00000367051
  gene symbol: CR1
  hgvsc: ENST00000367051.1:c.5426G>A
  hgvsp: ENSP00000356018.1:p.Arg1809Lys
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000434718
  ensembl transcript: ENST00000529814
  gene symbol: CR1
  hgvsc: ENST00000529814.1:c.1294G>A
  hgvsp: ENSP00000434718.1:p.Arg432Lys
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356019
  ensembl transcript: ENST00000367052
  gene symbol: CR1
  hgvsc: ENST00000367052.1:c.5426G>A
  hgvsp: ENSP00000356019.1:p.Arg1809Lys
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356016
  ensembl transcript: ENST00000367049
  gene symbol: CR1
  hgvsc: ENST00000367049.4:c.6776G>A
  hgvsp: ENSP00000356016.4:p.Arg2259Lys
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000383744
  ensembl transcript: ENST00000400960
  gene symbol: CR1
  hgvsc: ENST00000400960.2:c.5426G>A
  hgvsp: ENSP00000383744.2:p.Arg1809Lys
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356020
  ensembl transcript: ENST00000367053
  gene symbol: CR1
  hgvsc: ENST00000367053.1:c.5426G>A
  hgvsp: ENSP00000356020.1:p.Arg1809Lys
  variant of: http://identifiers.org/hgnc/2334
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1948
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2292
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 782
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9498
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9383
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5230
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9099
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1225
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7710
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8030
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3392
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3905
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4151
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Arg2259Lys
num of homozygotes: 0
population: European (Finnish)
population: Other
population: South Asian
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: FS

1-207790037-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 207790037
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 207790037
    reference: chr 1
allele count: 7
allele frequency: 5.796333405097461e-5
allele num: 120766
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000383744
  ensembl transcript: ENST00000400960
  gene symbol: CR1
  hgvsc: ENST00000400960.2:c.5429G>C
  hgvsp: ENSP00000383744.2:p.Gly1810Ala
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356019
  ensembl transcript: ENST00000367052
  gene symbol: CR1
  hgvsc: ENST00000367052.1:c.5429G>C
  hgvsp: ENSP00000356019.1:p.Gly1810Ala
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356018
  ensembl transcript: ENST00000367051
  gene symbol: CR1
  hgvsc: ENST00000367051.1:c.5429G>C
  hgvsp: ENSP00000356018.1:p.Gly1810Ala
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356020
  ensembl transcript: ENST00000367053
  gene symbol: CR1
  hgvsc: ENST00000367053.1:c.5429G>C
  hgvsp: ENSP00000356020.1:p.Gly1810Ala
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000434718
  ensembl transcript: ENST00000529814
  gene symbol: CR1
  hgvsc: ENST00000529814.1:c.1297G>C
  hgvsp: ENSP00000434718.1:p.Gly433Ala
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356016
  ensembl transcript: ENST00000367049
  gene symbol: CR1
  hgvsc: ENST00000367049.4:c.6779G>C
  hgvsp: ENSP00000356016.4:p.Gly2260Ala
  variant of: http://identifiers.org/hgnc/2334
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1225
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9099
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8030
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1946
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5230
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9498
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9381
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3391
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 781
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7708
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2299
  bin: 9.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28062
  bin: 9.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3816
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2335
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3931
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Gly2260Ala
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: African
population: East Asian
population: Latino
reference allele: G
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD

1-207790042-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 207790042
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 207790042
    reference: chr 1
allele count: 1
allele frequency: 8.280476292996373e-6
allele num: 120766
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356018
  ensembl transcript: ENST00000367051
  gene symbol: CR1
  hgvsc: ENST00000367051.1:c.5434A>T
  hgvsp: ENSP00000356018.1:p.Thr1812Ser
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356020
  ensembl transcript: ENST00000367053
  gene symbol: CR1
  hgvsc: ENST00000367053.1:c.5434A>T
  hgvsp: ENSP00000356020.1:p.Thr1812Ser
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356019
  ensembl transcript: ENST00000367052
  gene symbol: CR1
  hgvsc: ENST00000367052.1:c.5434A>T
  hgvsp: ENSP00000356019.1:p.Thr1812Ser
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356016
  ensembl transcript: ENST00000367049
  gene symbol: CR1
  hgvsc: ENST00000367049.4:c.6784A>T
  hgvsp: ENSP00000356016.4:p.Thr2262Ser
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000383744
  ensembl transcript: ENST00000400960
  gene symbol: CR1
  hgvsc: ENST00000400960.2:c.5434A>T
  hgvsp: ENSP00000383744.2:p.Thr1812Ser
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000434718
  ensembl transcript: ENST00000529814
  gene symbol: CR1
  hgvsc: ENST00000529814.1:c.1302A>T
  hgvsp: ENSP00000434718.1:p.Thr435Ser
  variant of: http://identifiers.org/hgnc/2334
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8033
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5231
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9496
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1946
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7709
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9101
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9381
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 781
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3392
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2294
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1225
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3816
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2335
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11998
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3905
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Thr2262Ser
num of homozygotes: 0
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Latino
population: East Asian
population: African
reference allele: A
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: DP

1-207790043-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 207790043
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 207790043
    reference: chr 1
allele count: 1
allele frequency: 8.280476292996373e-6
allele num: 120766
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356018
  ensembl transcript: ENST00000367051
  gene symbol: CR1
  hgvsc: ENST00000367051.1:c.5435C>T
  hgvsp: ENSP00000356018.1:p.Thr1812Ile
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356016
  ensembl transcript: ENST00000367049
  gene symbol: CR1
  hgvsc: ENST00000367049.4:c.6785C>T
  hgvsp: ENSP00000356016.4:p.Thr2262Ile
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000383744
  ensembl transcript: ENST00000400960
  gene symbol: CR1
  hgvsc: ENST00000400960.2:c.5435C>T
  hgvsp: ENSP00000383744.2:p.Thr1812Ile
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356019
  ensembl transcript: ENST00000367052
  gene symbol: CR1
  hgvsc: ENST00000367052.1:c.5435C>T
  hgvsp: ENSP00000356019.1:p.Thr1812Ile
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000356020
  ensembl transcript: ENST00000367053
  gene symbol: CR1
  hgvsc: ENST00000367053.1:c.5435C>T
  hgvsp: ENSP00000356020.1:p.Thr1812Ile
  variant of: http://identifiers.org/hgnc/2334
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000203710
  ensembl protein: ENSP00000434718
  ensembl transcript: ENST00000529814
  gene symbol: CR1
  hgvsc: ENST00000529814.1:c.1303C>T
  hgvsp: ENSP00000434718.1:p.Thr435Ile
  variant of: http://identifiers.org/hgnc/2334
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7709
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2295
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9495
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9381
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8033
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3392
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 781
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9101
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1946
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1225
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5231
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Thr2262Ile
num of homozygotes: 0
reference allele: C

GenotypeQuality
all individuals: 1205
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6673
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 9254
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1008
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 152
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3763
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1547
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6524
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 2.463357556349304e-4
allele num: 16238
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.93016610108948e-5
allele num: 11198
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9582
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8104
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 16
allele frequency: 2.495554793024924e-4
allele num: 64114
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.971758e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -2.864e0

MQRankSum
type: SiteQuality
SIO_000300: -1.001e0

FS
type: SiteQuality
SIO_000300: 1.288e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.73e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.38e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.830000000000001e-1

QD
type: SiteQuality
SIO_000300: 1.9e-1

MQ
type: SiteQuality
SIO_000300: 5.783e1

GenotypeQuality
all individuals: 149
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9435
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 775
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3160
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1285
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4051
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6570
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11370
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16360
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9646
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.536381514257621e-5
allele num: 65088
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8196
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 874
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.465e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.9e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -7.12e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.7e-1

VQSLOD
type: SiteQuality
SIO_000300: -8.080000000000001e-1

QD
type: SiteQuality
SIO_000300: 1.35e1

DP
type: SiteQuality
SIO_000300: 2.00711e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.18e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.451e0

GenotypeQuality
all individuals: 971
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4154
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1308
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 109
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9445
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 115
bin: 4.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6584
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8316
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9714
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.738203425375742e-5
allele num: 11444
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16404
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65668
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.15e0

MQ
type: SiteQuality
SIO_000300: 5.8e1

VQSLOD
type: SiteQuality
SIO_000300: -2.041e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.4e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.5e-3

MQRankSum
type: SiteQuality
SIO_000300: -1.409e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.04e0

DP
type: SiteQuality
SIO_000300: 2.031128e6

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 2.67e0

GenotypeQuality
all individuals: 3134
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9342
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 7216
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3964
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1272
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1623
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 166
bin: 1.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65050
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16300
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9642
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8222
num of homozygotes: 0

Latino
type: Population
allele count: 4
allele frequency: 3.539823008849558e-4
allele num: 11300
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6546
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.76e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.57e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.93e0

MQRankSum
type: SiteQuality
SIO_000300: 6.69e-1

MQ
type: SiteQuality
SIO_000300: 5.71e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.7e-3

QD
type: SiteQuality
SIO_000300: 4.19e0

DP
type: SiteQuality
SIO_000300: 2.070292e6

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.15e-1

GenotypeQuality
all individuals: 1001
bin: 2.25e1
variant carriers: 2

GenotypeQuality
all individuals: 7216
bin: 6.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1623
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 681
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3134
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 9342
bin: 9.75e1
variant carriers: 18

GenotypeQuality
all individuals: 562
bin: 4.75e1
variant carriers: 2

African
type: Population
allele count: 7
allele frequency: 7.25990458411118e-4
allele num: 9642
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.769911504424779e-4
allele num: 11300
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 24
allele frequency: 3.689469638739431e-4
allele num: 65050
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.216249087813184e-4
allele num: 8222
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.226993865030675e-4
allele num: 16300
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6546
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.71e1

QD
type: SiteQuality
SIO_000300: 4.19e0

DP
type: SiteQuality
SIO_000300: 2.070292e6

VQSLOD
type: SiteQuality
SIO_000300: 2.93e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.15e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.69e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.57e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.7e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -1.76e-1

GenotypeQuality
all individuals: 7466
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 541
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 495
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 616
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2931
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25491
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1287
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9634
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16318
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65220
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11388
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6570
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.205400192864031e-4
allele num: 8296
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.64e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.69e-1

VQSLOD
type: SiteQuality
SIO_000300: -5.802e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.262e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.789e0

QD
type: SiteQuality
SIO_000300: 1.094e1

DP
type: SiteQuality
SIO_000300: 2.061346e6

MQ
type: SiteQuality
SIO_000300: 5.892e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

GenotypeQuality
all individuals: 434
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 489
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3238
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 440
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7453
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2954
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 473
bin: 5.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16342
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8294
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11380
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9640
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6570
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.530690341343946e-5
allele num: 65330
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.81e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.89e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.8e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

DP
type: SiteQuality
SIO_000300: 2.072279e6

VQSLOD
type: SiteQuality
SIO_000300: -6.644e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.109e0

MQ
type: SiteQuality
SIO_000300: 5.655e1

QD
type: SiteQuality
SIO_000300: 1.804e1

GenotypeQuality
all individuals: 5
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9580
bin: 9.75e1
variant carriers: 6

GenotypeQuality
all individuals: 7995
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 116
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 161
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4288
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3126
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65950
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

African
type: Population
allele count: 6
allele frequency: 6.170300287947347e-4
allele num: 9724
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8394
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16436
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11496
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6592
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.5e-3

MQRankSum
type: SiteQuality
SIO_000300: 3.77e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.06e0

MQ
type: SiteQuality
SIO_000300: 5.468e1

FS
type: SiteQuality
SIO_000300: 1.535e0

DP
type: SiteQuality
SIO_000300: 2.065745e6

VQSLOD
type: SiteQuality
SIO_000300: -7.143e-1

QD
type: SiteQuality
SIO_000300: 1.755e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.24e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.46e-1

GenotypeQuality
all individuals: 251
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9580
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3408
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 700
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 123
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1724
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 116
bin: 5.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9724
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65950
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6592
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.698677800974252e-5
allele num: 11496
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16436
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8394
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.535e0

QD
type: SiteQuality
SIO_000300: 1.755e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.5e-3

DP
type: SiteQuality
SIO_000300: 2.065745e6

VQSLOD
type: SiteQuality
SIO_000300: -7.143e-1

MQ
type: SiteQuality
SIO_000300: 5.468e1

MQRankSum
type: SiteQuality
SIO_000300: 3.77e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.06e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.24e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.46e-1

GenotypeQuality
all individuals: 129
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
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variant carriers: 0

GenotypeQuality
all individuals: 4294
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9582
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 100
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3412
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3126
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8045
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9756
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16458
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11528
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.509661835748792e-5
allele num: 66240
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8498
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.989e0

QD
type: SiteQuality
SIO_000300: 1.426e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.5e-3

VQSLOD
type: SiteQuality
SIO_000300: -1.742e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.21e0

MQRankSum
type: SiteQuality
SIO_000300: 1.59e0

DP
type: SiteQuality
SIO_000300: 2.07388e6

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.463e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.92e0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 28294
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1740
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1382
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3435
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 4.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9794
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.003093185981561e-5
allele num: 66598
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16496
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -8.2e-1

QD
type: SiteQuality
SIO_000300: 1.314e1

MQRankSum
type: SiteQuality
SIO_000300: -3.11e-1

FS
type: SiteQuality
SIO_000300: 1.274e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.09e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.391e0

DP
type: SiteQuality
SIO_000300: 2.08372e6

MQ
type: SiteQuality
SIO_000300: 5.437e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.17e-1

GenotypeQuality
all individuals: 163
bin: 2.25e1
variant carriers: 7

GenotypeQuality
all individuals: 123
bin: 3.25e1
variant carriers: 13

GenotypeQuality
all individuals: 3020
bin: 8.25e1
variant carriers: 6

GenotypeQuality
all individuals: 4208
bin: 7.75e1
variant carriers: 6

GenotypeQuality
all individuals: 9606
bin: 9.75e1
variant carriers: 360

GenotypeQuality
all individuals: 200
bin: 4.75e1
variant carriers: 17

GenotypeQuality
all individuals: 7964
bin: 6.75e1
variant carriers: 7

GenotypeQuality
all individuals: 1350
bin: 8.75e1
variant carriers: 8

GenotypeQuality
all individuals: 27481
bin: 6.25e1
variant carriers: 12

East Asian
type: Population
allele count: 4
allele frequency: 4.662004662004662e-4
allele num: 8580
num of homozygotes: 0

South Asian
type: Population
allele count: 112
allele frequency: 6.813480958754107e-3
allele num: 16438
num of homozygotes: 0

Latino
type: Population
allele count: 14
allele frequency: 1.21654501216545e-3
allele num: 11508
num of homozygotes: 0

African
type: Population
allele count: 10
allele frequency: 1.024170421958214e-3
allele num: 9764
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 28
allele frequency: 4.246284501061571e-3
allele num: 6594
num of homozygotes: 0

Other
type: Population
allele count: 7
allele frequency: 7.865168539325843e-3
allele num: 890
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 329
allele frequency: 4.961993243243243e-3
allele num: 66304
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.3e-3

FS
type: SiteQuality
SIO_000300: 3.139e0

VQSLOD
type: SiteQuality
SIO_000300: -2.601e0

MQRankSum
type: SiteQuality
SIO_000300: -3.222e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.92e-1

QD
type: SiteQuality
SIO_000300: 2.09e0

MQ
type: SiteQuality
SIO_000300: 5.277e1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.7e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.55e0

DP
type: SiteQuality
SIO_000300: 2.141369e6

GenotypeQuality
all individuals: 81
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 8189
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GenotypeQuality
all individuals: 34
bin: 3.75e1
variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9796
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.212268153715602e-4
allele num: 16498
num of homozygotes: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500600240096038e-5
allele num: 66640
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.160900859066636e-4
allele num: 8614
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.35e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -5.16e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.21e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.08e-1

MQ
type: SiteQuality
SIO_000300: 5.397e1

FS
type: SiteQuality
SIO_000300: 1.572e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.01e0

QD
type: SiteQuality
SIO_000300: 1.472e1

MQRankSum
type: SiteQuality
SIO_000300: 6.15e-1

DP
type: SiteQuality
SIO_000300: 2.1147e6

GenotypeQuality
all individuals: 27
bin: 7.5e0
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 34
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variant carriers: 0

GenotypeQuality
all individuals: 28041
bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.001200480192077e-5
allele num: 66640
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9796
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8614
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.06134076857801e-5
allele num: 16498
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.35e-2

DP
type: SiteQuality
SIO_000300: 2.1147e6

MQRankSum
type: SiteQuality
SIO_000300: 6.15e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.21e-1

FS
type: SiteQuality
SIO_000300: 1.572e0

MQ
type: SiteQuality
SIO_000300: 5.397e1

QD
type: SiteQuality
SIO_000300: 1.472e1

VQSLOD
type: SiteQuality
SIO_000300: 4.08e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.16e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.01e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 10
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 94

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1718
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 82
allele frequency: 1.230049201968079e-3
allele num: 66664
num of homozygotes: 1

Other
type: Population
allele count: 1
allele frequency: 1.116071428571429e-3
allele num: 896
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.020616452337212e-4
allele num: 9798
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

Latino
type: Population
allele count: 11
allele frequency: 9.513924926483308e-4
allele num: 11562
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.05e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.01e-2

DP
type: SiteQuality
SIO_000300: 2.118557e6

FS
type: SiteQuality
SIO_000300: 6.35e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.64e-1

MQ
type: SiteQuality
SIO_000300: 5.058e1

MQRankSum
type: SiteQuality
SIO_000300: 6.24e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.82e-1

QD
type: SiteQuality
SIO_000300: 1.095e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.576e0

GenotypeQuality
all individuals: 3429
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 8
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 7
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GenotypeQuality
all individuals: 3067
bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.999580058791769e-5
allele num: 66676
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.511944360447536e-4
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9798
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.376e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.4e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.99e0

MQRankSum
type: SiteQuality
SIO_000300: 9.320000000000001e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

FS
type: SiteQuality
SIO_000300: 5.92e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.33e0

QD
type: SiteQuality
SIO_000300: 1.347e1

DP
type: SiteQuality
SIO_000300: 2.11767e6

MQ
type: SiteQuality
SIO_000300: 5.174e1

GenotypeQuality
all individuals: 5
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variant carriers: 0

GenotypeQuality
all individuals: 0
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variant carriers: 0

GenotypeQuality
all individuals: 23
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GenotypeQuality
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GenotypeQuality
all individuals: 8209
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GenotypeQuality
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variant carriers: 13

GenotypeQuality
all individuals: 1719
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GenotypeQuality
all individuals: 5
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GenotypeQuality
all individuals: 3068
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9798
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.998860433035446e-5
allele num: 66692
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

South Asian
type: Population
allele count: 11
allele frequency: 6.663435909861885e-4
allele num: 16508
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.81e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.638e0

MQRankSum
type: SiteQuality
SIO_000300: 1.1e0

MQ
type: SiteQuality
SIO_000300: 4.805e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.5e-3

FS
type: SiteQuality
SIO_000300: 1.176e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.42e-1

QD
type: SiteQuality
SIO_000300: 1.05e1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.23e-1

DP
type: SiteQuality
SIO_000300: 2.118373e6

GenotypeQuality
all individuals: 10029
bin: 9.75e1
variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 6
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 8202
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GenotypeQuality
all individuals: 30
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9798
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499385252046661e-5
allele num: 66694
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.26e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.28e0

QD
type: SiteQuality
SIO_000300: 8.92e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.5e-3

MQ
type: SiteQuality
SIO_000300: 4.739e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.58e0

VQSLOD
type: SiteQuality
SIO_000300: -2.526e0

MQRankSum
type: SiteQuality
SIO_000300: -1.82e-1

FS
type: SiteQuality
SIO_000300: 6.075e0

DP
type: SiteQuality
SIO_000300: 2.118248e6

GenotypeQuality
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variant carriers: 51

GenotypeQuality
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variant carriers: 17

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 57

GenotypeQuality
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variant carriers: 28

GenotypeQuality
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GenotypeQuality
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variant carriers: 244

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 544
allele frequency: 8.38496871050279e-3
allele num: 64878
num of homozygotes: 0

Other
type: Population
allele count: 8
allele frequency: 9.070294784580499e-3
allele num: 882
num of homozygotes: 0

African
type: Population
allele count: 28
allele frequency: 2.891367203634862e-3
allele num: 9684
num of homozygotes: 0

Latino
type: Population
allele count: 118
allele frequency: 1.060578824375337e-2
allele num: 11126
num of homozygotes: 0

South Asian
type: Population
allele count: 33
allele frequency: 2.021068103870652e-3
allele num: 16328
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 34
allele frequency: 5.297600498597694e-3
allele num: 6418
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -4.013e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.283e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.2e-2

ClippingRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 7.758e0

DP
type: SiteQuality
SIO_000300: 2.406108e6

QD
type: SiteQuality
SIO_000300: 8.4e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.39e0

MQ
type: SiteQuality
SIO_000300: 4.439e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.159285879897983e-4
allele num: 8626
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66712
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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African
type: Population
allele count: 0
allele frequency: 0.0e0
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South Asian
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num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.302e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.9e-3

FS
type: SiteQuality
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VQSLOD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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DP
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ReadPosRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 4.678e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.19e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2968
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9798
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498890820792613e-5
allele num: 66716
num of homozygotes: 0

Other
type: Population
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Latino
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East Asian
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num of homozygotes: 0

South Asian
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ClippingRankSum
type: SiteQuality
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BaseQRankSum
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DP
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VQSLOD
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FS
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MQRankSum
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QD
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ReadPosRankSum
type: SiteQuality
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InbreedingCoeff
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MQ
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 6
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1717
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66716
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.020616452337212e-4
allele num: 9798
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.9e-3

MQ
type: SiteQuality
SIO_000300: 4.484e1

VQSLOD
type: SiteQuality
SIO_000300: -1.833e0

DP
type: SiteQuality
SIO_000300: 2.148274e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.01e0

FS
type: SiteQuality
SIO_000300: 9.11e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.95e-1

QD
type: SiteQuality
SIO_000300: 9.119999999999999e0

MQRankSum
type: SiteQuality
SIO_000300: 2.65e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.335e0

GenotypeQuality
all individuals: 28160
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1716
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10078
bin: 9.75e1
variant carriers: 11

GenotypeQuality
all individuals: 4230
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66706
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9798
num of homozygotes: 0

East Asian
type: Population
allele count: 11
allele frequency: 1.275214467887781e-3
allele num: 8626
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.6e-3

DP
type: SiteQuality
SIO_000300: 2.148347e6

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 5.69e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.99e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.29e0

MQ
type: SiteQuality
SIO_000300: 4.738e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.95e-1

QD
type: SiteQuality
SIO_000300: 1.184e1

VQSLOD
type: SiteQuality
SIO_000300: -5.712e-1

GenotypeQuality
all individuals: 29
bin: 1.75e1
variant carriers: 4

GenotypeQuality
all individuals: 47
bin: 4.75e1
variant carriers: 9

GenotypeQuality
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bin: 6.75e1
variant carriers: 8

GenotypeQuality
all individuals: 3358
bin: 7.25e1
variant carriers: 7

GenotypeQuality
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bin: 5.25e1
variant carriers: 9

GenotypeQuality
all individuals: 1701
bin: 9.25e1
variant carriers: 5

GenotypeQuality
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bin: 7.75e1
variant carriers: 5

GenotypeQuality
all individuals: 52
bin: 3.25e1
variant carriers: 6

GenotypeQuality
all individuals: 9712
bin: 9.75e1
variant carriers: 108

Other
type: Population
allele count: 6
allele frequency: 6.711409395973154e-3
allele num: 894
num of homozygotes: 0

South Asian
type: Population
allele count: 68
allele frequency: 4.135749908770222e-3
allele num: 16442
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.159285879897983e-4
allele num: 8626
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 12
allele frequency: 1.822046765866991e-3
allele num: 6586
num of homozygotes: 0

Latino
type: Population
allele count: 5
allele frequency: 4.323015735777278e-4
allele num: 11566
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.021033285685113e-4
allele num: 9794
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 132
allele frequency: 1.98549983454168e-3
allele num: 66482
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.0176e1

DP
type: SiteQuality
SIO_000300: 2.152295e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.62e0

QD
type: SiteQuality
SIO_000300: 9.8e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.585e0

MQ
type: SiteQuality
SIO_000300: 4.641e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.4e-3

VQSLOD
type: SiteQuality
SIO_000300: -4.639e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.629999999999999e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.643e0

GenotypeQuality
all individuals: 92
bin: 5.75e1
variant carriers: 4

GenotypeQuality
all individuals: 54
bin: 2.5e0
variant carriers: 7

GenotypeQuality
all individuals: 9658
bin: 9.75e1
variant carriers: 25

GenotypeQuality
all individuals: 1328
bin: 8.75e1
variant carriers: 3

GenotypeQuality
all individuals: 124
bin: 5.25e1
variant carriers: 5

GenotypeQuality
all individuals: 27717
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 2945
bin: 8.25e1
variant carriers: 3

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

Other
type: Population
allele count: 4
allele frequency: 4.484304932735426e-3
allele num: 892
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9786
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.644536652835408e-5
allele num: 11568
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.161710037174721e-4
allele num: 8608
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 48
allele frequency: 7.216959855660803e-4
allele num: 66510
num of homozygotes: 0

South Asian
type: Population
allele count: 33
allele frequency: 2.007055102785549e-3
allele num: 16442
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 6.442e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.909e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

VQSLOD
type: SiteQuality
SIO_000300: -3.545e0

DP
type: SiteQuality
SIO_000300: 2.134448e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.075e0

MQ
type: SiteQuality
SIO_000300: 5.22e1

MQRankSum
type: SiteQuality
SIO_000300: -3.039e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.75e-1

QD
type: SiteQuality
SIO_000300: 1.01e0

GenotypeQuality
all individuals: 39
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 154
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1706
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 163
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8311
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 3.063725490196078e-4
allele num: 9792
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.50105073551486e-5
allele num: 66620
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8600
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16498
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.477e0

MQ
type: SiteQuality
SIO_000300: 5.114e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.01e0

QD
type: SiteQuality
SIO_000300: 1.427e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.43e-1

FS
type: SiteQuality
SIO_000300: 9.755000000000001e0

DP
type: SiteQuality
SIO_000300: 2.118951e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.2e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.27e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.81e0

GenotypeQuality
all individuals: 1704
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3332
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 298
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4220
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2963
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 169
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 1.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9790
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.501726986033939e-5
allele num: 66590
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16490
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8590
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.519e0

DP
type: SiteQuality
SIO_000300: 2.108142e6

QD
type: SiteQuality
SIO_000300: 1.283e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.8e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-3

MQRankSum
type: SiteQuality
SIO_000300: 2.33e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.32e-1

MQ
type: SiteQuality
SIO_000300: 5.363e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.36e-1

GenotypeQuality
all individuals: 7701
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 437
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3243
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23297
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 606
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 820
bin: 4.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9788
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.007157033740302e-5
allele num: 66508
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16488
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.168224299065421e-4
allele num: 8560
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 6.955e0

VQSLOD
type: SiteQuality
SIO_000300: -7.096e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.355e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.3e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 1.03e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.179999999999999e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.41e-1

DP
type: SiteQuality
SIO_000300: 2.080235e6

MQ
type: SiteQuality
SIO_000300: 4.766e1

QD
type: SiteQuality
SIO_000300: 2.16e0

GenotypeQuality
all individuals: 2952
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1704
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1316
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 948
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9712
bin: 9.75e1
variant carriers: 68

GenotypeQuality
all individuals: 3206
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 2
allele frequency: 1.730702665282105e-4
allele num: 11556
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8546
num of homozygotes: 0

African
type: Population
allele count: 66
allele frequency: 6.745707277187245e-3
allele num: 9784
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16490
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66442
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.16e0

MQRankSum
type: SiteQuality
SIO_000300: 5.25e-1

MQ
type: SiteQuality
SIO_000300: 5.468e1

VQSLOD
type: SiteQuality
SIO_000300: 5.0e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -3.29e-1

DP
type: SiteQuality
SIO_000300: 2.069387e6

QD
type: SiteQuality
SIO_000300: 1.572e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.69e-1

GenotypeQuality
all individuals: 1704
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7429
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 722
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21449
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9712
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1330
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1479
bin: 4.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16490
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9784
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.010144185906505e-5
allele num: 66442
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8546
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.69e-1

DP
type: SiteQuality
SIO_000300: 2.069387e6

MQ
type: SiteQuality
SIO_000300: 5.468e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-3

MQRankSum
type: SiteQuality
SIO_000300: 5.25e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.16e0

QD
type: SiteQuality
SIO_000300: 1.572e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 5.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.29e-1

GenotypeQuality
all individuals: 21607
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1503
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 228
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7400
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variant carriers: 0

GenotypeQuality
all individuals: 956
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1317
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 695
bin: 2.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16478
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66398
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.170138076293003e-4
allele num: 8546
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11548
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9782
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.068297e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.2e-3

VQSLOD
type: SiteQuality
SIO_000300: -1.516e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -1.473e0

MQ
type: SiteQuality
SIO_000300: 5.342e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.284e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.237e0

QD
type: SiteQuality
SIO_000300: 4.94e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.23e-1

GenotypeQuality
all individuals: 4136
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7299
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variant carriers: 0

GenotypeQuality
all individuals: 2947
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3185
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1913
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9669
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1707
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9782
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11532
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.172882946281961e-4
allele num: 8526
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66384
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16462
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -3.803e0

DP
type: SiteQuality
SIO_000300: 2.063718e6

QD
type: SiteQuality
SIO_000300: 5.16e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.18e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.77e0

BaseQRankSum
type: SiteQuality
SIO_000300: 8.110000000000001e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.791e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.1e-3

MQ
type: SiteQuality
SIO_000300: 5.342e1

GenotypeQuality
all individuals: 9671
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1706
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3192
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2076
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1317
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2952
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 274
bin: 5.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66418
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8522
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16478
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.021867974657674e-4
allele num: 9786
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.55e0

MQ
type: SiteQuality
SIO_000300: 5.321e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.2e-3

QD
type: SiteQuality
SIO_000300: 1.846e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.57e-1

DP
type: SiteQuality
SIO_000300: 2.061413e6

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.32e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.28e0

VQSLOD
type: SiteQuality
SIO_000300: -2.396e-1

GenotypeQuality
all individuals: 2276
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1695
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13953
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3156
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1520
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2953
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 768
bin: 2.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8462
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11504
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16414
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9776
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.023065993530639e-5
allele num: 66158
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.617e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.75e0

MQ
type: SiteQuality
SIO_000300: 5.463e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.89e-1

DP
type: SiteQuality
SIO_000300: 2.058607e6

MQRankSum
type: SiteQuality
SIO_000300: 8.69e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.4e-1

VQSLOD
type: SiteQuality
SIO_000300: -4.809e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.4e-3

QD
type: SiteQuality
SIO_000300: 1.221e1

GenotypeQuality
all individuals: 690
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2234
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3759
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3669
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1268
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3523
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3735
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.691117677733357e-5
allele num: 11506
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65756
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15056
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9744
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8420
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.281e0

VQSLOD
type: SiteQuality
SIO_000300: -5.023e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.52e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.35e-1

QD
type: SiteQuality
SIO_000300: 1.119e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.7e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.41e0

MQ
type: SiteQuality
SIO_000300: 5.723e1

DP
type: SiteQuality
SIO_000300: 2.420577e6

GenotypeQuality
all individuals: 3656
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1047
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6435
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2227
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 103
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variant carriers: 0

GenotypeQuality
all individuals: 619
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 667
bin: 2.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11508
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65770
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8422
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9740
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.639224538573895e-5
allele num: 15062
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 9.58e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.466e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.68e0

MQ
type: SiteQuality
SIO_000300: 5.928e1

MQRankSum
type: SiteQuality
SIO_000300: 1.47e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.1e-3

QD
type: SiteQuality
SIO_000300: 1.483e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.31e0

DP
type: SiteQuality
SIO_000300: 2.425615e6

GenotypeQuality
all individuals: 2249
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1127
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1164
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3696
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 625
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1287
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3772
bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.519433555170632e-5
allele num: 65814
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15136
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9738
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8428
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.35e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.23e0

DP
type: SiteQuality
SIO_000300: 2.433347e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.44e0

MQ
type: SiteQuality
SIO_000300: 5.976e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.9e-3

VQSLOD
type: SiteQuality
SIO_000300: 1.02e0

QD
type: SiteQuality
SIO_000300: 1.566e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.96e0

GenotypeQuality
all individuals: 34
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3807
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 147
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 109
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2051
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27977
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 36
bin: 1.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65898
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9750
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8448
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.682062858135092e-5
allele num: 11518
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15266
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 2.422e1

MQRankSum
type: SiteQuality
SIO_000300: 5.51e-1

FS
type: SiteQuality
SIO_000300: 5.922e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.090000000000001e-1

MQ
type: SiteQuality
SIO_000300: 5.934e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.01e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.97e0

DP
type: SiteQuality
SIO_000300: 2.450066e6

VQSLOD
type: SiteQuality
SIO_000300: -2.055e0

GenotypeQuality
all individuals: 2072
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27993
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 577
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 396
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 98
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3770
bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15430
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9760
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8532
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66058
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.671522719389525e-5
allele num: 11532
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.699999999999999e-2

MQ
type: SiteQuality
SIO_000300: 5.858e1

VQSLOD
type: SiteQuality
SIO_000300: -6.304999999999999e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.42e-1

QD
type: SiteQuality
SIO_000300: 1.672e1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.44e0

FS
type: SiteQuality
SIO_000300: 1.658e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.1e-3

DP
type: SiteQuality
SIO_000300: 2.462916e6

MQRankSum
type: SiteQuality
SIO_000300: -2.92e-1

GenotypeQuality
all individuals: 98
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 9920
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3828
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 133
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variant carriers: 0

GenotypeQuality
all individuals: 44
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variant carriers: 0

GenotypeQuality
all individuals: 27993
bin: 9.75e1
variant carriers: 8

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66058
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9760
num of homozygotes: 0

Latino
type: Population
allele count: 8
allele frequency: 6.93721817551162e-4
allele num: 11532
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15430
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8532
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.44e0

QD
type: SiteQuality
SIO_000300: 1.672e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.699999999999999e-2

MQ
type: SiteQuality
SIO_000300: 5.858e1

FS
type: SiteQuality
SIO_000300: 1.658e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.42e-1

DP
type: SiteQuality
SIO_000300: 2.462916e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.1e-3

MQRankSum
type: SiteQuality
SIO_000300: -2.92e-1

VQSLOD
type: SiteQuality
SIO_000300: -6.304999999999999e-1

GenotypeQuality
all individuals: 10500
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 805
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3857
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3790
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2103
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 282
bin: 2.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9772
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.509798592867711e-5
allele num: 66234
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11548
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8588
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15686
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.53e-1

VQSLOD
type: SiteQuality
SIO_000300: -5.365e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 8.63e-1

DP
type: SiteQuality
SIO_000300: 2.47385e6

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.49e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.2e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 3.52e-1

MQ
type: SiteQuality
SIO_000300: 5.745e1

QD
type: SiteQuality
SIO_000300: 1.337e1

GenotypeQuality
all individuals: 58
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variant carriers: 0

GenotypeQuality
all individuals: 400
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variant carriers: 0

GenotypeQuality
all individuals: 28004
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 5
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GenotypeQuality
all individuals: 4046
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variant carriers: 0

GenotypeQuality
all individuals: 128
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 65
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variant carriers: 0

GenotypeQuality
all individuals: 2299
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9778
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16132
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.504257047444267e-5
allele num: 66478
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8614
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -7.51e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.66e0

VQSLOD
type: SiteQuality
SIO_000300: -7.177e-1

FS
type: SiteQuality
SIO_000300: 1.734e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

DP
type: SiteQuality
SIO_000300: 2.488174e6

MQ
type: SiteQuality
SIO_000300: 5.688e1

QD
type: SiteQuality
SIO_000300: 1.372e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.19e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.93e-1

GenotypeQuality
all individuals: 3895
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 171
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
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variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11809
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variant carriers: 0

GenotypeQuality
all individuals: 26
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variant carriers: 0

GenotypeQuality
all individuals: 3870
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 3.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16380
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.501185936890143e-5
allele num: 66614
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9782
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.26e0

MQRankSum
type: SiteQuality
SIO_000300: 6.24e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.2e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 1.24e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 9.83e-1

QD
type: SiteQuality
SIO_000300: 1.176e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.995e0

DP
type: SiteQuality
SIO_000300: 2.494849e6

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3899
bin: 7.75e1
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GenotypeQuality
all individuals: 3814
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16490
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.638562543192812e-5
allele num: 11576
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9790
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66690
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.499023e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.93e0

QD
type: SiteQuality
SIO_000300: 1.167e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 1.45e0

VQSLOD
type: SiteQuality
SIO_000300: -1.905e0

MQ
type: SiteQuality
SIO_000300: 5.69e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.296e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.024e0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.021450459652707e-4
allele num: 9790
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.49934029027228e-5
allele num: 66696
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16494
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.54e0

VQSLOD
type: SiteQuality
SIO_000300: -1.793e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.15e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 5.41e-1

MQ
type: SiteQuality
SIO_000300: 5.664e1

QD
type: SiteQuality
SIO_000300: 1.032e1

FS
type: SiteQuality
SIO_000300: 1.0088e1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.2e-1

DP
type: SiteQuality
SIO_000300: 2.499175e6

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2192
bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056935190793458e-5
allele num: 16510
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66716
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9800
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.881e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQ
type: SiteQuality
SIO_000300: 5.926e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.75e0

VQSLOD
type: SiteQuality
SIO_000300: -8.905e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.22e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.3e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.54e0

QD
type: SiteQuality
SIO_000300: 1.151e1

DP
type: SiteQuality
SIO_000300: 2.50003e6

GenotypeQuality
all individuals: 2
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
all individuals: 3
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variant carriers: 0

GenotypeQuality
all individuals: 3926
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498890820792613e-5
allele num: 66716
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9800
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.893e0

MQ
type: SiteQuality
SIO_000300: 5.729e1

QD
type: SiteQuality
SIO_000300: 1.205e1

DP
type: SiteQuality
SIO_000300: 2.500107e6

FS
type: SiteQuality
SIO_000300: 1.4238e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.8e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.22e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.05e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.149999999999999e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.463e0

GenotypeQuality
all individuals: 2
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variant carriers: 0

GenotypeQuality
all individuals: 11984
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 9
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variant carriers: 0

GenotypeQuality
all individuals: 2333
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9800
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498845888665727e-5
allele num: 66718
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.283e1

MQRankSum
type: SiteQuality
SIO_000300: -1.023e0

FS
type: SiteQuality
SIO_000300: 5.142e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.1e-1

MQ
type: SiteQuality
SIO_000300: 5.722e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.8e-1

DP
type: SiteQuality
SIO_000300: 2.50017e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.523e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.4e-3

VQSLOD
type: SiteQuality
SIO_000300: -1.215e0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2192
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variant carriers: 0

GenotypeQuality
all individuals: 2333
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.997512064986062e-5
allele num: 66722
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9800
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.86e1

MQRankSum
type: SiteQuality
SIO_000300: 4.08e0

VQSLOD
type: SiteQuality
SIO_000300: 8.0e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.32e-1

QD
type: SiteQuality
SIO_000300: 1.324e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

DP
type: SiteQuality
SIO_000300: 2.500585e6

BaseQRankSum
type: SiteQuality
SIO_000300: 4.4e-2

FS
type: SiteQuality
SIO_000300: 4.07e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.25e-1

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9800
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498756032493031e-5
allele num: 66722
num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.19e0

BaseQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -7.19e-1

DP
type: SiteQuality
SIO_000300: 2.500345e6

MQ
type: SiteQuality
SIO_000300: 5.748e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

ReadPosRankSum
type: SiteQuality
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VQSLOD
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FS
type: SiteQuality
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QD
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9800
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.498531439189594e-5
allele num: 66732
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.42e-1

FS
type: SiteQuality
SIO_000300: 2.913e0

VQSLOD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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BaseQRankSum
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InbreedingCoeff
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QD
type: SiteQuality
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MQRankSum
type: SiteQuality
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MQ
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DP
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9800
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66736
num of homozygotes: 0

East Asian
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allele frequency: 1.159285879897983e-4
allele num: 8626
num of homozygotes: 0

European (Finnish)
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Other
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QD
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SIO_000300: 1.202e1

VQSLOD
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BaseQRankSum
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MQRankSum
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FS
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ReadPosRankSum
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InbreedingCoeff
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MQ
type: SiteQuality
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ClippingRankSum
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DP
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9800
num of homozygotes: 0

European (Finnish)
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allele count: 0
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European (Non-Finnish)
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allele frequency: 2.996883241428914e-5
allele num: 66736
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele num: 898
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

InbreedingCoeff
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MQRankSum
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DP
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FS
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VQSLOD
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ReadPosRankSum
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MQ
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QD
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BaseQRankSum
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ClippingRankSum
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6614
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South Asian
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allele num: 16512
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African
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

DP
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BaseQRankSum
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MQ
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ClippingRankSum
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QD
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MQRankSum
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ReadPosRankSum
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VQSLOD
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FS
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 1.4983967155144e-5
allele num: 66738
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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East Asian
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Latino
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African
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South Asian
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FS
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ClippingRankSum
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DP
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BaseQRankSum
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ReadPosRankSum
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InbreedingCoeff
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MQ
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SIO_000300: 5.101e1

QD
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VQSLOD
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MQRankSum
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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South Asian
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allele frequency: 0.0e0
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African
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Latino
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Other
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European (Finnish)
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allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 5.993766482857828e-5
allele num: 66736
num of homozygotes: 0

VQSLOD
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ReadPosRankSum
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ClippingRankSum
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MQRankSum
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QD
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BaseQRankSum
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InbreedingCoeff
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MQ
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FS
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DP
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

Other
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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European (Finnish)
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num of homozygotes: 0

African
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allele count: 0
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QD
type: SiteQuality
SIO_000300: 1.275e1

MQRankSum
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VQSLOD
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BaseQRankSum
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ReadPosRankSum
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MQ
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FS
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ClippingRankSum
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InbreedingCoeff
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 3

African
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allele frequency: 0.0e0
allele num: 9800
num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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Latino
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allele frequency: 0.0e0
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South Asian
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European (Non-Finnish)
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allele frequency: 4.495055439017081e-5
allele num: 66740
num of homozygotes: 0

MQ
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InbreedingCoeff
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ClippingRankSum
type: SiteQuality
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FS
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QD
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VQSLOD
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MQRankSum
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BaseQRankSum
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ReadPosRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 66740
num of homozygotes: 0

Latino
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Other
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South Asian
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African
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East Asian
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European (Finnish)
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BaseQRankSum
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InbreedingCoeff
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FS
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ReadPosRankSum
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QD
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DP
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MQ
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ClippingRankSum
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MQRankSum
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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num of homozygotes: 0

Latino
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num of homozygotes: 0

East Asian
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allele frequency: 2.318571759795966e-4
allele num: 8626
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Other
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South Asian
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African
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European (Finnish)
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InbreedingCoeff
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DP
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MQRankSum
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BaseQRankSum
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FS
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VQSLOD
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MQ
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ReadPosRankSum
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ClippingRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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East Asian
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South Asian
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Latino
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African
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Other
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European (Finnish)
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DP
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VQSLOD
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BaseQRankSum
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InbreedingCoeff
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MQ
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FS
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QD
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ClippingRankSum
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MQRankSum
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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European (Non-Finnish)
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allele num: 66740
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African
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Latino
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European (Finnish)
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Other
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South Asian
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QD
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BaseQRankSum
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MQ
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InbreedingCoeff
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ReadPosRankSum
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MQRankSum
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DP
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FS
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VQSLOD
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele frequency: 2.591568762957844e-4
allele num: 11576
num of homozygotes: 0

South Asian
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Other
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African
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allele count: 1
allele frequency: 1.020408163265306e-4
allele num: 9800
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 5.993407252022775e-5
allele num: 66740
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.02e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.1e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -5.9e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.16e0

VQSLOD
type: SiteQuality
SIO_000300: -1.008e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.88e-1

DP
type: SiteQuality
SIO_000300: 2.502997e6

QD
type: SiteQuality
SIO_000300: 1.197e1

MQ
type: SiteQuality
SIO_000300: 5.8e1

GenotypeQuality
all individuals: 3908
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 28048
bin: 9.75e1
variant carriers: 2

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3929
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3816
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9800
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498351813005694e-5
allele num: 66740
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.502997e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.1e-3

VQSLOD
type: SiteQuality
SIO_000300: -1.008e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.9e-2

MQRankSum
type: SiteQuality
SIO_000300: -1.02e-1

QD
type: SiteQuality
SIO_000300: 1.197e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.16e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.88e-1

MQ
type: SiteQuality
SIO_000300: 5.8e1

GenotypeQuality
all individuals: 3929
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 0
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variant carriers: 0

GenotypeQuality
all individuals: 3908
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9800
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.640055296353897e-5
allele num: 11574
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498351813005694e-5
allele num: 66740
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.318571759795966e-4
allele num: 8626
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.877e1

MQRankSum
type: SiteQuality
SIO_000300: 4.67e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.51e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.666e0

VQSLOD
type: SiteQuality
SIO_000300: 1.03e0

QD
type: SiteQuality
SIO_000300: 1.259e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.7e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -4.64e-1

FS
type: SiteQuality
SIO_000300: 1.746e0

DP
type: SiteQuality
SIO_000300: 2.502482e6

GenotypeQuality
all individuals: 5
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3926
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3809
bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3900
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.996703626011388e-5
allele num: 66740
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 4
allele frequency: 3.455425017277125e-4
allele num: 11576
num of homozygotes: 0

African
type: Population
allele count: 134
allele frequency: 1.36734693877551e-2
allele num: 9800
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.159285879897983e-4
allele num: 8626
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.33e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.34e0

MQ
type: SiteQuality
SIO_000300: 5.925e1

MQRankSum
type: SiteQuality
SIO_000300: 5.82e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.3e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -3.7e-1

DP
type: SiteQuality
SIO_000300: 2.519438e6

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.35e-1

QD
type: SiteQuality
SIO_000300: 1.405e1

GenotypeQuality
all individuals: 3931
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28059
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 0
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2189
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3816
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2337
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498351813005694e-5
allele num: 66740
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9802
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.852e0

QD
type: SiteQuality
SIO_000300: 1.571e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.8e-3

MQ
type: SiteQuality
SIO_000300: 5.973e1

FS
type: SiteQuality
SIO_000300: 2.298e0

DP
type: SiteQuality
SIO_000300: 2.50624e6

VQSLOD
type: SiteQuality
SIO_000300: 7.04e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.32e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.28e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.05e-1

GenotypeQuality
all individuals: 28060
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2189
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variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9800
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 5.993407252022775e-5
allele num: 66740
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.50674e6

BaseQRankSum
type: SiteQuality
SIO_000300: -7.321e0

VQSLOD
type: SiteQuality
SIO_000300: 3.81e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.45e-1

MQ
type: SiteQuality
SIO_000300: 5.912e1

MQRankSum
type: SiteQuality
SIO_000300: 6.63e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 1.22e0

QD
type: SiteQuality
SIO_000300: 1.33e1

GenotypeQuality
all individuals: 3905
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9800
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498351813005694e-5
allele num: 66740
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.527e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.34e0

QD
type: SiteQuality
SIO_000300: 1.166e1

VQSLOD
type: SiteQuality
SIO_000300: -4.35e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.84e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -1.416e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.795e0

MQ
type: SiteQuality
SIO_000300: 5.965e1

DP
type: SiteQuality
SIO_000300: 2.506848e6

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2188
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28060
bin: 9.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.638562543192812e-5
allele num: 11576
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9800
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66740
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.58e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

MQ
type: SiteQuality
SIO_000300: 5.952e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.626e0

DP
type: SiteQuality
SIO_000300: 2.50686e6

BaseQRankSum
type: SiteQuality
SIO_000300: -8.619e0

MQRankSum
type: SiteQuality
SIO_000300: -2.91e-1

VQSLOD
type: SiteQuality
SIO_000300: -6.698e-1

QD
type: SiteQuality
SIO_000300: 1.267e1

FS
type: SiteQuality
SIO_000300: 7.549e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2188
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 1.048846269103986e-4
allele num: 66740
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9800
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.62e-1

MQRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 2.507943e6

MQ
type: SiteQuality
SIO_000300: 5.921e1

VQSLOD
type: SiteQuality
SIO_000300: 3.62e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.861e0

FS
type: SiteQuality
SIO_000300: 5.29e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.81e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

QD
type: SiteQuality
SIO_000300: 1.353e1

GenotypeQuality
all individuals: 28060
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2188
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 0
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variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66740
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9800
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.916e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.07e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.33e0

QD
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: -8.63e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.986e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

FS
type: SiteQuality
SIO_000300: 3.012e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.6e-2

DP
type: SiteQuality
SIO_000300: 2.507141e6