6-153311233-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 153311233
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 153311233
    reference: chr 6
allele count: 1
allele frequency: 8.279379377721846e-6
allele num: 120782
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000356200
  ensembl transcript: ENST00000367231
  gene symbol: MTRF1L
  hgvsc: ENST00000367231.5:c.806-3C>T
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000461949
  gene symbol: MTRF1L
  hgvsc: ENST00000461949.1:n.481-3C>T
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000464135
  gene symbol: MTRF1L
  hgvsc: ENST00000464135.1:n.918-3C>T
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000356202
  ensembl transcript: ENST00000367233
  gene symbol: MTRF1L
  hgvsc: ENST00000367233.5:c.943-3C>T
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000356199
  ensembl transcript: ENST00000367230
  gene symbol: MTRF1L
  hgvsc: ENST00000367230.1:c.698-3C>T
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000414383
  ensembl transcript: ENST00000414771
  gene symbol: MTRF1L
  hgvsc: ENST00000414771.1:c.496-3C>T
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000485512
  gene symbol: MTRF1L
  hgvsc: ENST00000485512.1:n.781-3C>T
  variant of: http://identifiers.org/hgnc/21051
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8440
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 511
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47020
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2147
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 244
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 326
  bin: 9.25e1
  variant carriers: 0
hgvs: c.943-3C>T
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Other
population: Latino
population: European (Finnish)
population: African
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum

6-153311236-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 153311236
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 153311236
    reference: chr 6
allele count: 2
allele frequency: 1.656342134031205e-5
allele num: 120748
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000485512
  gene symbol: MTRF1L
  hgvsc: ENST00000485512.1:n.781-6A>C
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000356200
  ensembl transcript: ENST00000367231
  gene symbol: MTRF1L
  hgvsc: ENST00000367231.5:c.806-6A>C
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000356199
  ensembl transcript: ENST00000367230
  gene symbol: MTRF1L
  hgvsc: ENST00000367230.1:c.698-6A>C
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000356202
  ensembl transcript: ENST00000367233
  gene symbol: MTRF1L
  hgvsc: ENST00000367233.5:c.943-6A>C
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000464135
  gene symbol: MTRF1L
  hgvsc: ENST00000464135.1:n.918-6A>C
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000461949
  gene symbol: MTRF1L
  hgvsc: ENST00000461949.1:n.481-6A>C
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000414383
  ensembl transcript: ENST00000414771
  gene symbol: MTRF1L
  hgvsc: ENST00000414771.1:c.496-6A>C
  variant of: http://identifiers.org/hgnc/21051
canonical: true
consequence: splice region
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8424
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 602
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 46921
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2127
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 683
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1256
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 326
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 244
  bin: 8.75e1
  variant carriers: 0
hgvs: c.943-6A>C
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff

6-153311238-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 153311238
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 153311238
    reference: chr 6
allele count: 6
allele frequency: 4.970425965505244e-5
allele num: 120714
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000464135
  gene symbol: MTRF1L
  hgvsc: ENST00000464135.1:n.918-8A>G
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000461949
  gene symbol: MTRF1L
  hgvsc: ENST00000461949.1:n.481-8A>G
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000356202
  ensembl transcript: ENST00000367233
  gene symbol: MTRF1L
  hgvsc: ENST00000367233.5:c.943-8A>G
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000356199
  ensembl transcript: ENST00000367230
  gene symbol: MTRF1L
  hgvsc: ENST00000367230.1:c.698-8A>G
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000485512
  gene symbol: MTRF1L
  hgvsc: ENST00000485512.1:n.781-8A>G
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000356200
  ensembl transcript: ENST00000367231
  gene symbol: MTRF1L
  hgvsc: ENST00000367231.5:c.806-8A>G
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000414383
  ensembl transcript: ENST00000414771
  gene symbol: MTRF1L
  hgvsc: ENST00000414771.1:c.496-8A>G
  variant of: http://identifiers.org/hgnc/21051
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8402
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 655
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 46853
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2127
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1256
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1738
  bin: 9.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 244
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 7.5e0
  variant carriers: 0
hgvs: c.943-8A>G
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: Other
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: MQ

6-153311256-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 153311256
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 153311256
    reference: chr 6
allele count: 1
allele frequency: 8.320990530712775e-6
allele num: 120178
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000356199
  ensembl transcript: ENST00000367230
  gene symbol: MTRF1L
  hgvsc: ENST00000367230.1:c.698-26C>T
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000485512
  gene symbol: MTRF1L
  hgvsc: ENST00000485512.1:n.781-26C>T
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000414383
  ensembl transcript: ENST00000414771
  gene symbol: MTRF1L
  hgvsc: ENST00000414771.1:c.496-26C>T
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000356202
  ensembl transcript: ENST00000367233
  gene symbol: MTRF1L
  hgvsc: ENST00000367233.5:c.943-26C>T
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000461949
  gene symbol: MTRF1L
  hgvsc: ENST00000461949.1:n.481-26C>T
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000464135
  gene symbol: MTRF1L
  hgvsc: ENST00000464135.1:n.918-26C>T
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000356200
  ensembl transcript: ENST00000367231
  gene symbol: MTRF1L
  hgvsc: ENST00000367231.5:c.806-26C>T
  variant of: http://identifiers.org/hgnc/21051
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1059
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44207
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2166
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2149
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8345
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1243
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1736
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 327
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 693
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 719
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43856
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1245
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: G
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum

6-153311260-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 153311260
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 153311260
    reference: chr 6
allele count: 1
allele frequency: 8.332222370350619e-6
allele num: 120016
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000356202
  ensembl transcript: ENST00000367233
  gene symbol: MTRF1L
  hgvsc: ENST00000367233.5:c.943-30G>C
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000464135
  gene symbol: MTRF1L
  hgvsc: ENST00000464135.1:n.918-30G>C
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000356199
  ensembl transcript: ENST00000367230
  gene symbol: MTRF1L
  hgvsc: ENST00000367230.1:c.698-30G>C
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000485512
  gene symbol: MTRF1L
  hgvsc: ENST00000485512.1:n.781-30G>C
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000414383
  ensembl transcript: ENST00000414771
  gene symbol: MTRF1L
  hgvsc: ENST00000414771.1:c.496-30G>C
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000461949
  gene symbol: MTRF1L
  hgvsc: ENST00000461949.1:n.481-30G>C
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000356200
  ensembl transcript: ENST00000367231
  gene symbol: MTRF1L
  hgvsc: ENST00000367231.5:c.806-30G>C
  variant of: http://identifiers.org/hgnc/21051
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 42837
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2700
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 554
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8457
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2176
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1685
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1736
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1032
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42550
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 216
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 743
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7157
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 242
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: Latino
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD

6-153311266-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 153311266
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 153311266
    reference: chr 6
allele count: 1
allele frequency: 8.352683717278361e-6
allele num: 119722
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000414383
  ensembl transcript: ENST00000414771
  gene symbol: MTRF1L
  hgvsc: ENST00000414771.1:c.496-36A>C
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000461949
  gene symbol: MTRF1L
  hgvsc: ENST00000461949.1:n.481-36A>C
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000356199
  ensembl transcript: ENST00000367230
  gene symbol: MTRF1L
  hgvsc: ENST00000367230.1:c.698-36A>C
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000464135
  gene symbol: MTRF1L
  hgvsc: ENST00000464135.1:n.918-36A>C
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000356200
  ensembl transcript: ENST00000367231
  gene symbol: MTRF1L
  hgvsc: ENST00000367231.5:c.806-36A>C
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000356202
  ensembl transcript: ENST00000367233
  gene symbol: MTRF1L
  hgvsc: ENST00000367233.5:c.943-36A>C
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000485512
  gene symbol: MTRF1L
  hgvsc: ENST00000485512.1:n.781-36A>C
  variant of: http://identifiers.org/hgnc/21051
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 663
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4032
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3210
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8249
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40065
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2146
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2232
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 657
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 339
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39419
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6983
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 641
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 213
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1218
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1726
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: African
population: European (Finnish)
population: South Asian
reference allele: T
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum

6-153312285-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 153312285
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 153312285
    reference: chr 6
allele count: 1
allele frequency: 4.479483963447411e-5
allele num: 22324
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000414383
  ensembl transcript: ENST00000414771
  gene symbol: MTRF1L
  hgvsc: ENST00000414771.1:c.495+35T>C
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000356199
  ensembl transcript: ENST00000367230
  gene symbol: MTRF1L
  hgvsc: ENST00000367230.1:c.698-1055T>C
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000485512
  gene symbol: MTRF1L
  hgvsc: ENST00000485512.1:n.781-1055T>C
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000464135
  gene symbol: MTRF1L
  hgvsc: ENST00000464135.1:n.917+35T>C
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000356202
  ensembl transcript: ENST00000367233
  gene symbol: MTRF1L
  hgvsc: ENST00000367233.5:c.942+35T>C
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000356200
  ensembl transcript: ENST00000367231
  gene symbol: MTRF1L
  hgvsc: ENST00000367231.5:c.806-1055T>C
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000461949
  gene symbol: MTRF1L
  hgvsc: ENST00000461949.1:n.480+35T>C
  variant of: http://identifiers.org/hgnc/21051
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10936
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1274
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3512
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1205
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3052
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31031
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 698
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1428
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3304
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 905
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 245
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 928
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7747
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26262
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: South Asian
population: Latino
population: Other
population: European (Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQ

6-153312286-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 153312286
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 153312286
    reference: chr 6
allele count: 1
allele frequency: 4.461895413171515e-5
allele num: 22412
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000414383
  ensembl transcript: ENST00000414771
  gene symbol: MTRF1L
  hgvsc: ENST00000414771.1:c.495+34A>C
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000464135
  gene symbol: MTRF1L
  hgvsc: ENST00000464135.1:n.917+34A>C
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000461949
  gene symbol: MTRF1L
  hgvsc: ENST00000461949.1:n.480+34A>C
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000485512
  gene symbol: MTRF1L
  hgvsc: ENST00000485512.1:n.781-1056A>C
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000356199
  ensembl transcript: ENST00000367230
  gene symbol: MTRF1L
  hgvsc: ENST00000367230.1:c.698-1056A>C
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000356200
  ensembl transcript: ENST00000367231
  gene symbol: MTRF1L
  hgvsc: ENST00000367231.5:c.806-1056A>C
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000356202
  ensembl transcript: ENST00000367233
  gene symbol: MTRF1L
  hgvsc: ENST00000367233.5:c.942+34A>C
  variant of: http://identifiers.org/hgnc/21051
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11190
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3636
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2982
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1135
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1310
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30908
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 881
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8204
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3608
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1430
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26495
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3182
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3227
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1689
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 248
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: South Asian
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: T
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum

6-153312299-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 153312299
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 153312299
    reference: chr 6
allele count: 1
allele frequency: 4.18270035134683e-5
allele num: 23908
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000485512
  gene symbol: MTRF1L
  hgvsc: ENST00000485512.1:n.781-1069A>G
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000414383
  ensembl transcript: ENST00000414771
  gene symbol: MTRF1L
  hgvsc: ENST00000414771.1:c.495+21A>G
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000356200
  ensembl transcript: ENST00000367231
  gene symbol: MTRF1L
  hgvsc: ENST00000367231.5:c.806-1069A>G
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000356202
  ensembl transcript: ENST00000367233
  gene symbol: MTRF1L
  hgvsc: ENST00000367233.5:c.942+21A>G
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000464135
  gene symbol: MTRF1L
  hgvsc: ENST00000464135.1:n.917+21A>G
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000356199
  ensembl transcript: ENST00000367230
  gene symbol: MTRF1L
  hgvsc: ENST00000367230.1:c.698-1069A>G
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000461949
  gene symbol: MTRF1L
  hgvsc: ENST00000461949.1:n.480+21A>G
  variant of: http://identifiers.org/hgnc/21051
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2499
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 878
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15792
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 731
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26715
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4902
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1572
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12673
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 867
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 325
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 379
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1437
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 566
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25047
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2123
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1642
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 736
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
population: Latino
reference allele: T
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD

6-153312303-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 153312303
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 153312303
    reference: chr 6
allele count: 0
allele frequency: 0.0e0
allele num: 24724
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000461949
  gene symbol: MTRF1L
  hgvsc: ENST00000461949.1:n.480+17A>G
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000414383
  ensembl transcript: ENST00000414771
  gene symbol: MTRF1L
  hgvsc: ENST00000414771.1:c.495+17A>G
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000356202
  ensembl transcript: ENST00000367233
  gene symbol: MTRF1L
  hgvsc: ENST00000367233.5:c.942+17A>G
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000356200
  ensembl transcript: ENST00000367231
  gene symbol: MTRF1L
  hgvsc: ENST00000367231.5:c.806-1073A>G
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000464135
  gene symbol: MTRF1L
  hgvsc: ENST00000464135.1:n.917+17A>G
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000356199
  ensembl transcript: ENST00000367230
  gene symbol: MTRF1L
  hgvsc: ENST00000367230.1:c.698-1073A>G
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000485512
  gene symbol: MTRF1L
  hgvsc: ENST00000485512.1:n.781-1073A>G
  variant of: http://identifiers.org/hgnc/21051
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 913
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25263
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17383
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 695
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5157
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1622
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2497
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 331
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 162
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1843
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 862
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 910
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24289
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 695
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 198
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: South Asian
population: African
population: Latino
population: East Asian
population: European (Finnish)
reference allele: T
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ

6-153312304-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 153312304
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 153312304
    reference: chr 6
allele count: 0
allele frequency: 0.0e0
allele num: 25030
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000485512
  gene symbol: MTRF1L
  hgvsc: ENST00000485512.1:n.781-1074T>A
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000464135
  gene symbol: MTRF1L
  hgvsc: ENST00000464135.1:n.917+16T>A
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000356200
  ensembl transcript: ENST00000367231
  gene symbol: MTRF1L
  hgvsc: ENST00000367231.5:c.806-1074T>A
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000356202
  ensembl transcript: ENST00000367233
  gene symbol: MTRF1L
  hgvsc: ENST00000367233.5:c.942+16T>A
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000461949
  gene symbol: MTRF1L
  hgvsc: ENST00000461949.1:n.480+16T>A
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000414383
  ensembl transcript: ENST00000414771
  gene symbol: MTRF1L
  hgvsc: ENST00000414771.1:c.495+16T>A
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000356199
  ensembl transcript: ENST00000367230
  gene symbol: MTRF1L
  hgvsc: ENST00000367230.1:c.698-1074T>A
  variant of: http://identifiers.org/hgnc/21051
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5221
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1629
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24804
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2540
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 923
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17842
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 693
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 292
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1630
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 383
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 505
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 861
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24122
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 699
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15033
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: Other
population: East Asian
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: A
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum

6-153312307-ATT-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 153312307
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 153312305
    reference: chr 6
allele count: 1
allele frequency: 3.887420307883688e-5
allele num: 25724
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000414383
  ensembl transcript: ENST00000414771
  gene symbol: MTRF1L
  hgvsc: ENST00000414771.1:c.495+11_495+12delAA
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000356200
  ensembl transcript: ENST00000367231
  gene symbol: MTRF1L
  hgvsc: ENST00000367231.5:c.806-1079_806-1078delAA
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000485512
  gene symbol: MTRF1L
  hgvsc: ENST00000485512.1:n.781-1079_781-1078delAA
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000356199
  ensembl transcript: ENST00000367230
  gene symbol: MTRF1L
  hgvsc: ENST00000367230.1:c.698-1079_698-1078delAA
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000461949
  gene symbol: MTRF1L
  hgvsc: ENST00000461949.1:n.480+11_480+12delAA
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000356202
  ensembl transcript: ENST00000367233
  gene symbol: MTRF1L
  hgvsc: ENST00000367233.5:c.942+11_942+12delAA
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000464135
  gene symbol: MTRF1L
  hgvsc: ENST00000464135.1:n.917+11_917+12delAA
  variant of: http://identifiers.org/hgnc/21051
canonical: true
consequence: intron
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 705
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5445
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19238
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 939
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1653
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23379
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2584
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 148
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5796
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 811
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 171
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 135
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 471
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 164
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 296
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 390
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: ATT
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: BaseQRankSum

6-153312307-ATTC-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 153312307
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 153312304
    reference: chr 6
allele count: 0
allele frequency: 0.0e0
allele num: 25724
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000464135
  gene symbol: MTRF1L
  hgvsc: ENST00000464135.1:n.917+10_917+12delGAA
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000414383
  ensembl transcript: ENST00000414771
  gene symbol: MTRF1L
  hgvsc: ENST00000414771.1:c.495+10_495+12delGAA
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000461949
  gene symbol: MTRF1L
  hgvsc: ENST00000461949.1:n.480+10_480+12delGAA
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000356202
  ensembl transcript: ENST00000367233
  gene symbol: MTRF1L
  hgvsc: ENST00000367233.5:c.942+10_942+12delGAA
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000356199
  ensembl transcript: ENST00000367230
  gene symbol: MTRF1L
  hgvsc: ENST00000367230.1:c.698-1080_698-1078delGAA
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000485512
  gene symbol: MTRF1L
  hgvsc: ENST00000485512.1:n.781-1080_781-1078delGAA
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000356200
  ensembl transcript: ENST00000367231
  gene symbol: MTRF1L
  hgvsc: ENST00000367231.5:c.806-1080_806-1078delGAA
  variant of: http://identifiers.org/hgnc/21051
canonical: true
consequence: intron
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1653
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 705
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2584
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23379
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19238
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 939
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5445
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 719
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 941
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 124
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5796
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 135
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23128
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1590
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 171
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 811
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16309
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: African
population: Latino
reference allele: ATTC
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD

6-153312308-TTC-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 153312308
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 153312306
    reference: chr 6
allele count: 5651
allele frequency: 1.871811858231202e-1
allele num: 30190
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000414383
  ensembl transcript: ENST00000414771
  gene symbol: MTRF1L
  hgvsc: ENST00000414771.1:c.495+10_495+11delGA
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000356202
  ensembl transcript: ENST00000367233
  gene symbol: MTRF1L
  hgvsc: ENST00000367233.5:c.942+10_942+11delGA
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000356200
  ensembl transcript: ENST00000367231
  gene symbol: MTRF1L
  hgvsc: ENST00000367231.5:c.806-1080_806-1079delGA
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000356199
  ensembl transcript: ENST00000367230
  gene symbol: MTRF1L
  hgvsc: ENST00000367230.1:c.698-1080_698-1079delGA
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000464135
  gene symbol: MTRF1L
  hgvsc: ENST00000464135.1:n.917+10_917+11delGA
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000461949
  gene symbol: MTRF1L
  hgvsc: ENST00000461949.1:n.480+10_480+11delGA
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000485512
  gene symbol: MTRF1L
  hgvsc: ENST00000485512.1:n.781-1080_781-1079delGA
  variant of: http://identifiers.org/hgnc/21051
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5567
  bin: 2.25e1
  variant carriers: 346
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 5.25e1
  variant carriers: 146
genotype depth: GenotypeDepth
  all individuals: 751
  bin: 3.75e1
  variant carriers: 452
genotype depth: GenotypeDepth
  all individuals: 1788
  bin: 2.75e1
  variant carriers: 373
genotype depth: GenotypeDepth
  all individuals: 682
  bin: 1.75e1
  variant carriers: 523
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 9.75e1
  variant carriers: 210
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.25e1
  variant carriers: 40
genotype depth: GenotypeDepth
  all individuals: 22349
  bin: 7.5e0
  variant carriers: 3630
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.75e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 4.75e1
  variant carriers: 264
genotype depth: GenotypeDepth
  all individuals: 3179
  bin: 1.25e1
  variant carriers: 1830
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 5.75e1
  variant carriers: 89
genotype depth: GenotypeDepth
  all individuals: 19527
  bin: 2.5e0
  variant carriers: 578
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 6.75e1
  variant carriers: 35
genotype depth: GenotypeDepth
  all individuals: 1118
  bin: 3.25e1
  variant carriers: 475
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 6.25e1
  variant carriers: 68
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 9.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 4.25e1
  variant carriers: 348
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.25e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.75e1
  variant carriers: 30
genotype quality: GenotypeQuality
  all individuals: 1217
  bin: 1.25e1
  variant carriers: 193
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 5.25e1
  variant carriers: 19
genotype quality: GenotypeQuality
  all individuals: 292
  bin: 3.75e1
  variant carriers: 89
genotype quality: GenotypeQuality
  all individuals: 468
  bin: 7.25e1
  variant carriers: 159
genotype quality: GenotypeQuality
  all individuals: 1012
  bin: 6.75e1
  variant carriers: 147
genotype quality: GenotypeQuality
  all individuals: 17041
  bin: 7.5e0
  variant carriers: 151
genotype quality: GenotypeQuality
  all individuals: 15388
  bin: 2.25e1
  variant carriers: 143
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 8.75e1
  variant carriers: 29
genotype quality: GenotypeQuality
  all individuals: 206
  bin: 9.25e1
  variant carriers: 62
genotype quality: GenotypeQuality
  all individuals: 8226
  bin: 9.75e1
  variant carriers: 6988
num of homozygotes: 389
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: African
population: Other
reference allele: TTC
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP

http://identifiers.org/exac.variant/6-153312310-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 153312310
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 153312310
    reference: chr 6
allele count: 2
allele frequency: 1.007353681877707e-4
allele num: 19854
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000356200
  ensembl transcript: ENST00000367231
  gene symbol: MTRF1L
  hgvsc: ENST00000367231.5:c.806-1080G>T
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000356199
  ensembl transcript: ENST00000367230
  gene symbol: MTRF1L
  hgvsc: ENST00000367230.1:c.698-1080G>T
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000464135
  gene symbol: MTRF1L
  hgvsc: ENST00000464135.1:n.917+10G>T
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000461949
  gene symbol: MTRF1L
  hgvsc: ENST00000461949.1:n.480+10G>T
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000414383
  ensembl transcript: ENST00000414771
  gene symbol: MTRF1L
  hgvsc: ENST00000414771.1:c.495+10G>T
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000356202
  ensembl transcript: ENST00000367233
  gene symbol: MTRF1L
  hgvsc: ENST00000367233.5:c.942+10G>T
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000485512
  gene symbol: MTRF1L
  hgvsc: ENST00000485512.1:n.781-1080G>T
  variant of: http://identifiers.org/hgnc/21051
canonical: true
consequence: intron
filter: VQSRTrancheINDEL96.00to97.00
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18122
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19382
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1492
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1473
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5244
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 686
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 259
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5163
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 494
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4197
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1246
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1004
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 303
  bin: 7.25e1
  variant carriers: 1
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Other
population: Latino
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD

6-153312310-CT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 153312310
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 153312309
    reference: chr 6
allele count: 3
allele frequency: 1.511030522816561e-4
allele num: 19854
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000356199
  ensembl transcript: ENST00000367230
  gene symbol: MTRF1L
  hgvsc: ENST00000367230.1:c.698-1081delA
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000461949
  gene symbol: MTRF1L
  hgvsc: ENST00000461949.1:n.480+9delA
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000356202
  ensembl transcript: ENST00000367233
  gene symbol: MTRF1L
  hgvsc: ENST00000367233.5:c.942+9delA
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000356200
  ensembl transcript: ENST00000367231
  gene symbol: MTRF1L
  hgvsc: ENST00000367231.5:c.806-1081delA
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000414383
  ensembl transcript: ENST00000414771
  gene symbol: MTRF1L
  hgvsc: ENST00000414771.1:c.495+9delA
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000464135
  gene symbol: MTRF1L
  hgvsc: ENST00000464135.1:n.917+9delA
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000485512
  gene symbol: MTRF1L
  hgvsc: ENST00000485512.1:n.781-1081delA
  variant of: http://identifiers.org/hgnc/21051
canonical: true
consequence: splice region
filter: VQSRTrancheINDEL96.00to97.00
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19382
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1473
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 686
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5244
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1492
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18122
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 494
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1004
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 15339
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1412
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5163
  bin: 6.25e1
  variant carriers: 0
hgvs: c.942+9delA
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: Other
population: South Asian
reference allele: CT
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum

6-153312310-CTT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 153312310
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 153312308
    reference: chr 6
allele count: 2
allele frequency: 1.007353681877707e-4
allele num: 19854
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000356199
  ensembl transcript: ENST00000367230
  gene symbol: MTRF1L
  hgvsc: ENST00000367230.1:c.698-1082_698-1081delAA
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000356202
  ensembl transcript: ENST00000367233
  gene symbol: MTRF1L
  hgvsc: ENST00000367233.5:c.942+8_942+9delAA
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000485512
  gene symbol: MTRF1L
  hgvsc: ENST00000485512.1:n.781-1082_781-1081delAA
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000461949
  gene symbol: MTRF1L
  hgvsc: ENST00000461949.1:n.480+8_480+9delAA
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000414383
  ensembl transcript: ENST00000414771
  gene symbol: MTRF1L
  hgvsc: ENST00000414771.1:c.495+8_495+9delAA
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000356200
  ensembl transcript: ENST00000367231
  gene symbol: MTRF1L
  hgvsc: ENST00000367231.5:c.806-1082_806-1081delAA
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000464135
  gene symbol: MTRF1L
  hgvsc: ENST00000464135.1:n.917+8_917+9delAA
  variant of: http://identifiers.org/hgnc/21051
canonical: true
consequence: splice region
filter: VQSRTrancheINDEL96.00to97.00
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18122
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19382
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1492
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 686
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5244
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1473
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1004
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1246
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5163
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16116
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 858
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 326
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 303
  bin: 7.25e1
  variant carriers: 0
hgvs: c.942+8_942+9delAA
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: South Asian
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: CTT
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: DP
site quality: ClippingRankSum

6-153312310-CTTT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 153312310
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 153312307
    reference: chr 6
allele count: 0
allele frequency: 0.0e0
allele num: 19854
alternate allele: C
canonical: false
filter: VQSRTrancheINDEL96.00to97.00
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1473
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 686
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5244
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18122
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19382
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1492
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5163
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16116
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4197
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 858
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 303
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 476
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 199
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1004
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 494
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15339
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1412
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 326
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1246
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 147
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 259
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 5602
  num of homozygotes: 0
population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 2000
  num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 1252
  num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 748
  num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: CTTT
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum

6-153312336-TTCTG-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 153312336
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 153312332
    reference: chr 6
allele count: 3
allele frequency: 7.112712788657593e-5
allele num: 42178
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000461949
  gene symbol: MTRF1L
  hgvsc: ENST00000461949.1:n.460_463delCAGA
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000463251
  gene symbol: MTRF1L
  hgvsc: ENST00000463251.1:n.795_798delCAGA
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000485512
  gene symbol: MTRF1L
  hgvsc: ENST00000485512.1:n.781-1110_781-1107delCAGA
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000464135
  gene symbol: MTRF1L
  hgvsc: ENST00000464135.1:n.897_900delCAGA
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000414383
  ensembl transcript: ENST00000414771
  gene symbol: MTRF1L
  hgvsc: ENST00000414771.1:c.475_478delCAGA
  hgvsp: ENSP00000414383.1:p.Gln159MetfsTer16
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000356199
  ensembl transcript: ENST00000367230
  gene symbol: MTRF1L
  hgvsc: ENST00000367230.1:c.698-1110_698-1107delCAGA
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000356200
  ensembl transcript: ENST00000367231
  gene symbol: MTRF1L
  hgvsc: ENST00000367231.5:c.806-1110_806-1107delCAGA
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000356202
  ensembl transcript: ENST00000367233
  gene symbol: MTRF1L
  hgvsc: ENST00000367233.5:c.922_925delCAGA
  hgvsp: ENSP00000356202.5:p.Gln308MetfsTer16
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000485283
  gene symbol: MTRF1L
  hgvsc: ENST00000485283.1:n.649_652delCAGA
  variant of: http://identifiers.org/hgnc/21051
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9929
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30367
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 740
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 714
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8675
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2361
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1295
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3975
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8321
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 480
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 559
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 358
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 272
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Gln308MetfsTer16
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
population: Other
population: European (Finnish)
reference allele: TTCTG
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: QD

6-153312343-TTTTA-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 153312343
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 153312339
    reference: chr 6
allele count: 1
allele frequency: 2.184932704072714e-5
allele num: 45768
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000356202
  ensembl transcript: ENST00000367233
  gene symbol: MTRF1L
  hgvsc: ENST00000367233.5:c.915_918delTAAA
  hgvsp: ENSP00000356202.5:p.Asn305LysfsTer19
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000356200
  ensembl transcript: ENST00000367231
  gene symbol: MTRF1L
  hgvsc: ENST00000367231.5:c.806-1117_806-1114delTAAA
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000356199
  ensembl transcript: ENST00000367230
  gene symbol: MTRF1L
  hgvsc: ENST00000367230.1:c.698-1117_698-1114delTAAA
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000485512
  gene symbol: MTRF1L
  hgvsc: ENST00000485512.1:n.781-1117_781-1114delTAAA
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000463251
  gene symbol: MTRF1L
  hgvsc: ENST00000463251.1:n.788_791delTAAA
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000461949
  gene symbol: MTRF1L
  hgvsc: ENST00000461949.1:n.453_456delTAAA
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000485283
  gene symbol: MTRF1L
  hgvsc: ENST00000485283.1:n.642_645delTAAA
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000464135
  gene symbol: MTRF1L
  hgvsc: ENST00000464135.1:n.890_893delTAAA
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000414383
  ensembl transcript: ENST00000414771
  gene symbol: MTRF1L
  hgvsc: ENST00000414771.1:c.468_471delTAAA
  hgvsp: ENSP00000414383.1:p.Asn156LysfsTer19
  variant of: http://identifiers.org/hgnc/21051
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11329
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 743
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1309
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 878
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30305
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2506
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4083
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7020
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1394
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 591
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2532
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 482
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6762
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Asn305LysfsTer19
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: European (Finnish)
reference allele: TTTTA
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: QD

6-153312347-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 153312347
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 153312347
    reference: chr 6
allele count: 1
allele frequency: 2.102784086130036e-5
allele num: 47556
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000463251
  gene symbol: MTRF1L
  hgvsc: ENST00000463251.1:n.788T>A
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000485512
  gene symbol: MTRF1L
  hgvsc: ENST00000485512.1:n.781-1117T>A
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000356202
  ensembl transcript: ENST00000367233
  gene symbol: MTRF1L
  hgvsc: ENST00000367233.5:c.915T>A
  hgvsp: ENSP00000356202.5:p.Asn305Lys
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000464135
  gene symbol: MTRF1L
  hgvsc: ENST00000464135.1:n.890T>A
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000414383
  ensembl transcript: ENST00000414771
  gene symbol: MTRF1L
  hgvsc: ENST00000414771.1:c.468T>A
  hgvsp: ENSP00000414383.1:p.Asn156Lys
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000485283
  gene symbol: MTRF1L
  hgvsc: ENST00000485283.1:n.642T>A
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000356200
  ensembl transcript: ENST00000367231
  gene symbol: MTRF1L
  hgvsc: ENST00000367231.5:c.806-1117T>A
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000356199
  ensembl transcript: ENST00000367230
  gene symbol: MTRF1L
  hgvsc: ENST00000367230.1:c.698-1117T>A
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000461949
  gene symbol: MTRF1L
  hgvsc: ENST00000461949.1:n.453T>A
  variant of: http://identifiers.org/hgnc/21051
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30102
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4065
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12253
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 743
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6237
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 918
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1328
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2575
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 556
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1565
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6090
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28900
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 490
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Asn305Lys
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: A
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum

6-153312352-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 153312352
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 153312352
    reference: chr 6
allele count: 2
allele frequency: 3.973457305201256e-5
allele num: 50334
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000414383
  ensembl transcript: ENST00000414771
  gene symbol: MTRF1L
  hgvsc: ENST00000414771.1:c.463A>G
  hgvsp: ENSP00000414383.1:p.Ile155Val
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000485283
  gene symbol: MTRF1L
  hgvsc: ENST00000485283.1:n.637A>G
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000356202
  ensembl transcript: ENST00000367233
  gene symbol: MTRF1L
  hgvsc: ENST00000367233.5:c.910A>G
  hgvsp: ENSP00000356202.5:p.Ile304Val
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000464135
  gene symbol: MTRF1L
  hgvsc: ENST00000464135.1:n.885A>G
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000463251
  gene symbol: MTRF1L
  hgvsc: ENST00000463251.1:n.783A>G
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000461949
  gene symbol: MTRF1L
  hgvsc: ENST00000461949.1:n.448A>G
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000485512
  gene symbol: MTRF1L
  hgvsc: ENST00000485512.1:n.781-1122A>G
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000356199
  ensembl transcript: ENST00000367230
  gene symbol: MTRF1L
  hgvsc: ENST00000367230.1:c.698-1122A>G
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000356200
  ensembl transcript: ENST00000367231
  gene symbol: MTRF1L
  hgvsc: ENST00000367231.5:c.806-1122A>G
  variant of: http://identifiers.org/hgnc/21051
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5428
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 742
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2677
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29784
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1332
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13310
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1037
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3967
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 203
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 485
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13301
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28572
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5285
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ile304Val
num of homozygotes: 0
population: European (Finnish)
population: Other
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: African
reference allele: T
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS

6-153312352-TTTC-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 153312352
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 153312349
    reference: chr 6
allele count: 4
allele frequency: 7.946914610402511e-5
allele num: 50334
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000356202
  ensembl transcript: ENST00000367233
  gene symbol: MTRF1L
  hgvsc: ENST00000367233.5:c.907_909delGAA
  hgvsp: ENSP00000356202.5:p.Glu303del
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000356199
  ensembl transcript: ENST00000367230
  gene symbol: MTRF1L
  hgvsc: ENST00000367230.1:c.698-1125_698-1123delGAA
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000485512
  gene symbol: MTRF1L
  hgvsc: ENST00000485512.1:n.781-1125_781-1123delGAA
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000356200
  ensembl transcript: ENST00000367231
  gene symbol: MTRF1L
  hgvsc: ENST00000367231.5:c.806-1125_806-1123delGAA
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000463251
  gene symbol: MTRF1L
  hgvsc: ENST00000463251.1:n.780_782delGAA
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000461949
  gene symbol: MTRF1L
  hgvsc: ENST00000461949.1:n.445_447delGAA
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000464135
  gene symbol: MTRF1L
  hgvsc: ENST00000464135.1:n.882_884delGAA
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000414383
  ensembl transcript: ENST00000414771
  gene symbol: MTRF1L
  hgvsc: ENST00000414771.1:c.460_462delGAA
  hgvsp: ENSP00000414383.1:p.Glu154del
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000485283
  gene symbol: MTRF1L
  hgvsc: ENST00000485283.1:n.634_636delGAA
  variant of: http://identifiers.org/hgnc/21051
canonical: true
consequence: inframe deletion
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5428
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1332
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 742
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13310
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29784
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3967
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2677
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1037
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1455
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 231
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 486
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 485
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 203
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Glu303del
num of homozygotes: 0
population: Other
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
reference allele: TTTC
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD

http://identifiers.org/exac.variant/6-153312358-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 153312358
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 153312358
    reference: chr 6
allele count: 1
allele frequency: 1.847814035995417e-5
allele num: 54118
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000485283
  gene symbol: MTRF1L
  hgvsc: ENST00000485283.1:n.631G>T
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000356202
  ensembl transcript: ENST00000367233
  gene symbol: MTRF1L
  hgvsc: ENST00000367233.5:c.904G>T
  hgvsp: ENSP00000356202.5:p.Glu302Ter
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000414383
  ensembl transcript: ENST00000414771
  gene symbol: MTRF1L
  hgvsc: ENST00000414771.1:c.457G>T
  hgvsp: ENSP00000414383.1:p.Glu153Ter
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000461949
  gene symbol: MTRF1L
  hgvsc: ENST00000461949.1:n.442G>T
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000485512
  gene symbol: MTRF1L
  hgvsc: ENST00000485512.1:n.781-1128G>T
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000356200
  ensembl transcript: ENST00000367231
  gene symbol: MTRF1L
  hgvsc: ENST00000367231.5:c.806-1128G>T
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000463251
  gene symbol: MTRF1L
  hgvsc: ENST00000463251.1:n.777G>T
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000356199
  ensembl transcript: ENST00000367230
  gene symbol: MTRF1L
  hgvsc: ENST00000367230.1:c.698-1128G>T
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000464135
  gene symbol: MTRF1L
  hgvsc: ENST00000464135.1:n.879G>T
  variant of: http://identifiers.org/hgnc/21051
canonical: true
consequence: stop gained
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28929
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3926
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1349
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2889
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1089
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4306
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15105
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 742
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 227
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1503
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 501
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 417
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4245
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Glu302Ter
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Other
reference allele: C
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD

6-153312366-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 153312366
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 153312366
    reference: chr 6
allele count: 1
allele frequency: 1.624906567872347e-5
allele num: 61542
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000485512
  gene symbol: MTRF1L
  hgvsc: ENST00000485512.1:n.781-1136A>C
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000414383
  ensembl transcript: ENST00000414771
  gene symbol: MTRF1L
  hgvsc: ENST00000414771.1:c.449A>C
  hgvsp: ENSP00000414383.1:p.His150Pro
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000461949
  gene symbol: MTRF1L
  hgvsc: ENST00000461949.1:n.434A>C
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000464135
  gene symbol: MTRF1L
  hgvsc: ENST00000464135.1:n.871A>C
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000415113
  ensembl transcript: ENST00000448966
  gene symbol: MTRF1L
  hgvsc: ENST00000448966.1:c.488A>C
  hgvsp: ENSP00000415113.1:p.His163Pro
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000463251
  gene symbol: MTRF1L
  hgvsc: ENST00000463251.1:n.769A>C
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000356202
  ensembl transcript: ENST00000367233
  gene symbol: MTRF1L
  hgvsc: ENST00000367233.5:c.896A>C
  hgvsp: ENSP00000356202.5:p.His299Pro
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000356199
  ensembl transcript: ENST00000367230
  gene symbol: MTRF1L
  hgvsc: ENST00000367230.1:c.698-1136A>C
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000356200
  ensembl transcript: ENST00000367231
  gene symbol: MTRF1L
  hgvsc: ENST00000367231.5:c.806-1136A>C
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000485283
  gene symbol: MTRF1L
  hgvsc: ENST00000485283.1:n.623A>C
  variant of: http://identifiers.org/hgnc/21051
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18427
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 742
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3244
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3073
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3677
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26624
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1365
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1224
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 650
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 585
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 519
  bin: 7.25e1
  variant carriers: 0
hgvs: p.His299Pro
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
population: European (Non-Finnish)
population: African
population: Other
reference allele: T
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ

6-153312370-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 153312370
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 153312370
    reference: chr 6
allele count: 1
allele frequency: 1.545212930341801e-5
allele num: 64716
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000464135
  gene symbol: MTRF1L
  hgvsc: ENST00000464135.1:n.867A>G
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000461949
  gene symbol: MTRF1L
  hgvsc: ENST00000461949.1:n.430A>G
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000414383
  ensembl transcript: ENST00000414771
  gene symbol: MTRF1L
  hgvsc: ENST00000414771.1:c.445A>G
  hgvsp: ENSP00000414383.1:p.Met149Val
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000485283
  gene symbol: MTRF1L
  hgvsc: ENST00000485283.1:n.619A>G
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000415113
  ensembl transcript: ENST00000448966
  gene symbol: MTRF1L
  hgvsc: ENST00000448966.1:c.484A>G
  hgvsp: ENSP00000415113.1:p.Met162Val
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000356199
  ensembl transcript: ENST00000367230
  gene symbol: MTRF1L
  hgvsc: ENST00000367230.1:c.698-1140A>G
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000356202
  ensembl transcript: ENST00000367233
  gene symbol: MTRF1L
  hgvsc: ENST00000367233.5:c.892A>G
  hgvsp: ENSP00000356202.5:p.Met298Val
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000485512
  gene symbol: MTRF1L
  hgvsc: ENST00000485512.1:n.781-1140A>G
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000463251
  gene symbol: MTRF1L
  hgvsc: ENST00000463251.1:n.765A>G
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000356200
  ensembl transcript: ENST00000367231
  gene symbol: MTRF1L
  hgvsc: ENST00000367231.5:c.806-1140A>G
  variant of: http://identifiers.org/hgnc/21051
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1474
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 744
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1388
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3650
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25440
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19532
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2696
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3458
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 358
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 589
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 340
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Met298Val
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
population: Other
reference allele: T
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: BaseQRankSum

6-153312373-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 153312373
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 153312373
    reference: chr 6
allele count: 2
allele frequency: 2.993384619989822e-5
allele num: 66814
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000414383
  ensembl transcript: ENST00000414771
  gene symbol: MTRF1L
  hgvsc: ENST00000414771.1:c.442A>G
  hgvsp: ENSP00000414383.1:p.Ser148Gly
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000415113
  ensembl transcript: ENST00000448966
  gene symbol: MTRF1L
  hgvsc: ENST00000448966.1:c.481A>G
  hgvsp: ENSP00000415113.1:p.Ser161Gly
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000464135
  gene symbol: MTRF1L
  hgvsc: ENST00000464135.1:n.864A>G
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000356200
  ensembl transcript: ENST00000367231
  gene symbol: MTRF1L
  hgvsc: ENST00000367231.5:c.806-1143A>G
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000485512
  gene symbol: MTRF1L
  hgvsc: ENST00000485512.1:n.781-1143A>G
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000463251
  gene symbol: MTRF1L
  hgvsc: ENST00000463251.1:n.762A>G
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000356202
  ensembl transcript: ENST00000367233
  gene symbol: MTRF1L
  hgvsc: ENST00000367233.5:c.889A>G
  hgvsp: ENSP00000356202.5:p.Ser297Gly
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000356199
  ensembl transcript: ENST00000367230
  gene symbol: MTRF1L
  hgvsc: ENST00000367230.1:c.698-1143A>G
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000485283
  gene symbol: MTRF1L
  hgvsc: ENST00000485283.1:n.616A>G
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000461949
  gene symbol: MTRF1L
  hgvsc: ENST00000461949.1:n.427A>G
  variant of: http://identifiers.org/hgnc/21051
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2492
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3626
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3617
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24564
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1724
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20208
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1410
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 744
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 499
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 790
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 620
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Ser297Gly
num of homozygotes: 0
population: Other
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
reference allele: T
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum

6-153312374-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 153312374
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 153312374
    reference: chr 6
allele count: 1
allele frequency: 1.485928259383637e-5
allele num: 67298
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000414383
  ensembl transcript: ENST00000414771
  gene symbol: MTRF1L
  hgvsc: ENST00000414771.1:c.441C>G
  hgvsp: ENSP00000414383.1:p.Tyr147Ter
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000485283
  gene symbol: MTRF1L
  hgvsc: ENST00000485283.1:n.615C>G
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000415113
  ensembl transcript: ENST00000448966
  gene symbol: MTRF1L
  hgvsc: ENST00000448966.1:c.480C>G
  hgvsp: ENSP00000415113.1:p.Tyr160Ter
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000356199
  ensembl transcript: ENST00000367230
  gene symbol: MTRF1L
  hgvsc: ENST00000367230.1:c.698-1144C>G
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000356200
  ensembl transcript: ENST00000367231
  gene symbol: MTRF1L
  hgvsc: ENST00000367231.5:c.806-1144C>G
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000356202
  ensembl transcript: ENST00000367233
  gene symbol: MTRF1L
  hgvsc: ENST00000367233.5:c.888C>G
  hgvsp: ENSP00000356202.5:p.Tyr296Ter
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000485512
  gene symbol: MTRF1L
  hgvsc: ENST00000485512.1:n.781-1144C>G
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000464135
  gene symbol: MTRF1L
  hgvsc: ENST00000464135.1:n.863C>G
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000463251
  gene symbol: MTRF1L
  hgvsc: ENST00000463251.1:n.761C>G
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000461949
  gene symbol: MTRF1L
  hgvsc: ENST00000461949.1:n.426C>G
  variant of: http://identifiers.org/hgnc/21051
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 749
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3644
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1426
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24184
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3715
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20420
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2429
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1820
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1743
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 378
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 897
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Tyr296Ter
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum

6-153312378-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 153312378
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 153312378
    reference: chr 6
allele count: 1
allele frequency: 1.430205949656751e-5
allele num: 69920
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000415113
  ensembl transcript: ENST00000448966
  gene symbol: MTRF1L
  hgvsc: ENST00000448966.1:c.476T>C
  hgvsp: ENSP00000415113.1:p.Leu159Pro
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000463251
  gene symbol: MTRF1L
  hgvsc: ENST00000463251.1:n.757T>C
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000485512
  gene symbol: MTRF1L
  hgvsc: ENST00000485512.1:n.781-1148T>C
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000485283
  gene symbol: MTRF1L
  hgvsc: ENST00000485283.1:n.611T>C
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000356199
  ensembl transcript: ENST00000367230
  gene symbol: MTRF1L
  hgvsc: ENST00000367230.1:c.698-1148T>C
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000356202
  ensembl transcript: ENST00000367233
  gene symbol: MTRF1L
  hgvsc: ENST00000367233.5:c.884T>C
  hgvsp: ENSP00000356202.5:p.Leu295Pro
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000414383
  ensembl transcript: ENST00000414771
  gene symbol: MTRF1L
  hgvsc: ENST00000414771.1:c.437T>C
  hgvsp: ENSP00000414383.1:p.Leu146Pro
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000464135
  gene symbol: MTRF1L
  hgvsc: ENST00000464135.1:n.859T>C
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000461949
  gene symbol: MTRF1L
  hgvsc: ENST00000461949.1:n.422T>C
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000356200
  ensembl transcript: ENST00000367231
  gene symbol: MTRF1L
  hgvsc: ENST00000367231.5:c.806-1148T>C
  variant of: http://identifiers.org/hgnc/21051
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1431
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2239
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23265
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3659
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1942
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21161
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3950
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 748
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1783
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 665
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 545
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Leu295Pro
num of homozygotes: 0
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: European (Finnish)
population: African
reference allele: A
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: QD

6-153312387-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 153312387
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 153312387
    reference: chr 6
allele count: 2
allele frequency: 2.690631222084701e-5
allele num: 74332
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000485283
  gene symbol: MTRF1L
  hgvsc: ENST00000485283.1:n.602G>A
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000414383
  ensembl transcript: ENST00000414771
  gene symbol: MTRF1L
  hgvsc: ENST00000414771.1:c.428G>A
  hgvsp: ENSP00000414383.1:p.Arg143His
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000461949
  gene symbol: MTRF1L
  hgvsc: ENST00000461949.1:n.413G>A
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000464135
  gene symbol: MTRF1L
  hgvsc: ENST00000464135.1:n.850G>A
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000415113
  ensembl transcript: ENST00000448966
  gene symbol: MTRF1L
  hgvsc: ENST00000448966.1:c.467G>A
  hgvsp: ENSP00000415113.1:p.Arg156His
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000485512
  gene symbol: MTRF1L
  hgvsc: ENST00000485512.1:n.781-1157G>A
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000356202
  ensembl transcript: ENST00000367233
  gene symbol: MTRF1L
  hgvsc: ENST00000367233.5:c.875G>A
  hgvsp: ENSP00000356202.5:p.Arg292His
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000463251
  gene symbol: MTRF1L
  hgvsc: ENST00000463251.1:n.748G>A
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000356199
  ensembl transcript: ENST00000367230
  gene symbol: MTRF1L
  hgvsc: ENST00000367230.1:c.698-1157G>A
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000356200
  ensembl transcript: ENST00000367231
  gene symbol: MTRF1L
  hgvsc: ENST00000367231.5:c.806-1157G>A
  variant of: http://identifiers.org/hgnc/21051
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2327
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1514
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22361
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1886
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4593
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3700
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21271
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 748
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1302
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 540
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 226
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Arg292His
num of homozygotes: 0
population: European (Finnish)
population: African
population: South Asian
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: MQ

6-153312388-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 153312388
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 153312388
    reference: chr 6
allele count: 0
allele frequency: 0.0e0
allele num: 75310
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000485283
  gene symbol: MTRF1L
  hgvsc: ENST00000485283.1:n.601C>G
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000356202
  ensembl transcript: ENST00000367233
  gene symbol: MTRF1L
  hgvsc: ENST00000367233.5:c.874C>G
  hgvsp: ENSP00000356202.5:p.Arg292Gly
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000415113
  ensembl transcript: ENST00000448966
  gene symbol: MTRF1L
  hgvsc: ENST00000448966.1:c.466C>G
  hgvsp: ENSP00000415113.1:p.Arg156Gly
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000356200
  ensembl transcript: ENST00000367231
  gene symbol: MTRF1L
  hgvsc: ENST00000367231.5:c.806-1158C>G
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000463251
  gene symbol: MTRF1L
  hgvsc: ENST00000463251.1:n.747C>G
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000414383
  ensembl transcript: ENST00000414771
  gene symbol: MTRF1L
  hgvsc: ENST00000414771.1:c.427C>G
  hgvsp: ENSP00000414383.1:p.Arg143Gly
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000461949
  gene symbol: MTRF1L
  hgvsc: ENST00000461949.1:n.412C>G
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000356199
  ensembl transcript: ENST00000367230
  gene symbol: MTRF1L
  hgvsc: ENST00000367230.1:c.698-1158C>G
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000464135
  gene symbol: MTRF1L
  hgvsc: ENST00000464135.1:n.849C>G
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000485512
  gene symbol: MTRF1L
  hgvsc: ENST00000485512.1:n.781-1158C>G
  variant of: http://identifiers.org/hgnc/21051
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 22619
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2393
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3679
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 747
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4799
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20785
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1805
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1574
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 793
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 548
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 571
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Arg292Gly
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: African
population: European (Finnish)
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff

6-153312394-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 153312394
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 153312394
    reference: chr 6
allele count: 1
allele frequency: 1.247972045426182e-5
allele num: 80130
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000463251
  gene symbol: MTRF1L
  hgvsc: ENST00000463251.1:n.741A>G
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000356199
  ensembl transcript: ENST00000367230
  gene symbol: MTRF1L
  hgvsc: ENST00000367230.1:c.698-1164A>G
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000414383
  ensembl transcript: ENST00000414771
  gene symbol: MTRF1L
  hgvsc: ENST00000414771.1:c.421A>G
  hgvsp: ENSP00000414383.1:p.Lys141Glu
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000464135
  gene symbol: MTRF1L
  hgvsc: ENST00000464135.1:n.843A>G
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000356202
  ensembl transcript: ENST00000367233
  gene symbol: MTRF1L
  hgvsc: ENST00000367233.5:c.868A>G
  hgvsp: ENSP00000356202.5:p.Lys290Glu
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000485283
  gene symbol: MTRF1L
  hgvsc: ENST00000485283.1:n.595A>G
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000461949
  gene symbol: MTRF1L
  hgvsc: ENST00000461949.1:n.406A>G
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000415113
  ensembl transcript: ENST00000448966
  gene symbol: MTRF1L
  hgvsc: ENST00000448966.1:c.460A>G
  hgvsp: ENSP00000415113.1:p.Lys154Glu
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000356200
  ensembl transcript: ENST00000367231
  gene symbol: MTRF1L
  hgvsc: ENST00000367231.5:c.806-1164A>G
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000485512
  gene symbol: MTRF1L
  hgvsc: ENST00000485512.1:n.781-1164A>G
  variant of: http://identifiers.org/hgnc/21051
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3408
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5199
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2067
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 748
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1573
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1531
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24949
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18934
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 586
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2014
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Lys290Glu
num of homozygotes: 0
population: Latino
population: Other
population: South Asian
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum

6-153312396-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 153312396
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 153312396
    reference: chr 6
allele count: 2
allele frequency: 2.448220143955344e-5
allele num: 81692
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000485512
  gene symbol: MTRF1L
  hgvsc: ENST00000485512.1:n.781-1166C>A
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000485283
  gene symbol: MTRF1L
  hgvsc: ENST00000485283.1:n.593C>A
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000356199
  ensembl transcript: ENST00000367230
  gene symbol: MTRF1L
  hgvsc: ENST00000367230.1:c.698-1166C>A
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000463251
  gene symbol: MTRF1L
  hgvsc: ENST00000463251.1:n.739C>A
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000356202
  ensembl transcript: ENST00000367233
  gene symbol: MTRF1L
  hgvsc: ENST00000367233.5:c.866C>A
  hgvsp: ENSP00000356202.5:p.Thr289Lys
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000461949
  gene symbol: MTRF1L
  hgvsc: ENST00000461949.1:n.404C>A
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000464135
  gene symbol: MTRF1L
  hgvsc: ENST00000464135.1:n.841C>A
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000415113
  ensembl transcript: ENST00000448966
  gene symbol: MTRF1L
  hgvsc: ENST00000448966.1:c.458C>A
  hgvsp: ENSP00000415113.1:p.Thr153Lys
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000414383
  ensembl transcript: ENST00000414771
  gene symbol: MTRF1L
  hgvsc: ENST00000414771.1:c.419C>A
  hgvsp: ENSP00000414383.1:p.Thr140Lys
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000356200
  ensembl transcript: ENST00000367231
  gene symbol: MTRF1L
  hgvsc: ENST00000367231.5:c.806-1166C>A
  variant of: http://identifiers.org/hgnc/21051
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 753
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25838
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1946
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1584
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3298
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18179
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1457
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5351
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1024
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 225
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2532
  bin: 9.75e1
  variant carriers: 2
hgvs: p.Thr289Lys
num of homozygotes: 0
population: European (Finnish)
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
population: South Asian
population: Latino
reference allele: G
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum

6-153312407-CTCTT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 153312407
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 153312403
    reference: chr 6
allele count: 1
allele frequency: 1.111358079573239e-5
allele num: 89980
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000463251
  gene symbol: MTRF1L
  hgvsc: ENST00000463251.1:n.724_727delAAGA
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000485512
  gene symbol: MTRF1L
  hgvsc: ENST00000485512.1:n.781-1181_781-1178delAAGA
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000464135
  gene symbol: MTRF1L
  hgvsc: ENST00000464135.1:n.826_829delAAGA
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000356200
  ensembl transcript: ENST00000367231
  gene symbol: MTRF1L
  hgvsc: ENST00000367231.5:c.806-1181_806-1178delAAGA
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000414383
  ensembl transcript: ENST00000414771
  gene symbol: MTRF1L
  hgvsc: ENST00000414771.1:c.404_407delAAGA
  hgvsp: ENSP00000414383.1:p.Lys135SerfsTer4
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000356202
  ensembl transcript: ENST00000367233
  gene symbol: MTRF1L
  hgvsc: ENST00000367233.5:c.851_854delAAGA
  hgvsp: ENSP00000356202.5:p.Lys284SerfsTer4
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000485283
  gene symbol: MTRF1L
  hgvsc: ENST00000485283.1:n.578_581delAAGA
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000415113
  ensembl transcript: ENST00000448966
  gene symbol: MTRF1L
  hgvsc: ENST00000448966.1:c.443_446delAAGA
  hgvsp: ENSP00000415113.1:p.Lys148SerfsTer4
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000356199
  ensembl transcript: ENST00000367230
  gene symbol: MTRF1L
  hgvsc: ENST00000367230.1:c.698-1181_698-1178delAAGA
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000461949
  gene symbol: MTRF1L
  hgvsc: ENST00000461949.1:n.389_392delAAGA
  variant of: http://identifiers.org/hgnc/21051
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30533
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2558
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1135
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1671
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 754
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1068
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14500
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6193
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 232
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2340
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Lys284SerfsTer4
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Latino
population: African
population: European (Finnish)
population: Other
reference allele: CTCTT
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum

6-153312408-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 153312408
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 153312408
    reference: chr 6
allele count: 3
allele frequency: 3.316896269597329e-5
allele num: 90446
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000356199
  ensembl transcript: ENST00000367230
  gene symbol: MTRF1L
  hgvsc: ENST00000367230.1:c.698-1178A>G
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000464135
  gene symbol: MTRF1L
  hgvsc: ENST00000464135.1:n.829A>G
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000461949
  gene symbol: MTRF1L
  hgvsc: ENST00000461949.1:n.392A>G
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000485512
  gene symbol: MTRF1L
  hgvsc: ENST00000485512.1:n.781-1178A>G
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000414383
  ensembl transcript: ENST00000414771
  gene symbol: MTRF1L
  hgvsc: ENST00000414771.1:c.407A>G
  hgvsp: ENSP00000414383.1:p.Glu136Gly
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000356200
  ensembl transcript: ENST00000367231
  gene symbol: MTRF1L
  hgvsc: ENST00000367231.5:c.806-1178A>G
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000463251
  gene symbol: MTRF1L
  hgvsc: ENST00000463251.1:n.727A>G
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000485283
  gene symbol: MTRF1L
  hgvsc: ENST00000485283.1:n.581A>G
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000415113
  ensembl transcript: ENST00000448966
  gene symbol: MTRF1L
  hgvsc: ENST00000448966.1:c.446A>G
  hgvsp: ENSP00000415113.1:p.Glu149Gly
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000356202
  ensembl transcript: ENST00000367233
  gene symbol: MTRF1L
  hgvsc: ENST00000367233.5:c.854A>G
  hgvsp: ENSP00000356202.5:p.Glu285Gly
  variant of: http://identifiers.org/hgnc/21051
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1054
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 752
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1094
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1658
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14326
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30760
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6233
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2532
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 643
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 516
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 158
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Glu285Gly
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
population: South Asian
population: European (Finnish)
reference allele: T
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: DP

6-153312419-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 153312419
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 153312419
    reference: chr 6
allele count: 1
allele frequency: 1.059187391433292e-5
allele num: 94412
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000485512
  gene symbol: MTRF1L
  hgvsc: ENST00000485512.1:n.781-1189G>A
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000415113
  ensembl transcript: ENST00000448966
  gene symbol: MTRF1L
  hgvsc: ENST00000448966.1:c.435G>A
  hgvsp: ENST00000448966.1:c.435G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000414383
  ensembl transcript: ENST00000414771
  gene symbol: MTRF1L
  hgvsc: ENST00000414771.1:c.396G>A
  hgvsp: ENST00000414771.1:c.396G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000461949
  gene symbol: MTRF1L
  hgvsc: ENST00000461949.1:n.381G>A
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000464135
  gene symbol: MTRF1L
  hgvsc: ENST00000464135.1:n.818G>A
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000485283
  gene symbol: MTRF1L
  hgvsc: ENST00000485283.1:n.570G>A
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000463251
  gene symbol: MTRF1L
  hgvsc: ENST00000463251.1:n.716G>A
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000356202
  ensembl transcript: ENST00000367233
  gene symbol: MTRF1L
  hgvsc: ENST00000367233.5:c.843G>A
  hgvsp: ENST00000367233.5:c.843G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000356200
  ensembl transcript: ENST00000367231
  gene symbol: MTRF1L
  hgvsc: ENST00000367231.5:c.806-1189G>A
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000356199
  ensembl transcript: ENST00000367230
  gene symbol: MTRF1L
  hgvsc: ENST00000367230.1:c.698-1189G>A
  variant of: http://identifiers.org/hgnc/21051
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 32724
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 872
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6643
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1748
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 761
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12472
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 881
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2310
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35434
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 367
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13424
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Leu281Leu
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: South Asian
reference allele: C
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum

6-153312423-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 153312423
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 153312423
    reference: chr 6
allele count: 1
allele frequency: 1.048943713680324e-5
allele num: 95334
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000485512
  gene symbol: MTRF1L
  hgvsc: ENST00000485512.1:n.781-1193A>C
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000485283
  gene symbol: MTRF1L
  hgvsc: ENST00000485283.1:n.566A>C
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000415113
  ensembl transcript: ENST00000448966
  gene symbol: MTRF1L
  hgvsc: ENST00000448966.1:c.431A>C
  hgvsp: ENSP00000415113.1:p.Gln144Pro
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000356202
  ensembl transcript: ENST00000367233
  gene symbol: MTRF1L
  hgvsc: ENST00000367233.5:c.839A>C
  hgvsp: ENSP00000356202.5:p.Gln280Pro
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000461949
  gene symbol: MTRF1L
  hgvsc: ENST00000461949.1:n.377A>C
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000464135
  gene symbol: MTRF1L
  hgvsc: ENST00000464135.1:n.814A>C
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000414383
  ensembl transcript: ENST00000414771
  gene symbol: MTRF1L
  hgvsc: ENST00000414771.1:c.392A>C
  hgvsp: ENSP00000414383.1:p.Gln131Pro
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000463251
  gene symbol: MTRF1L
  hgvsc: ENST00000463251.1:n.712A>C
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000356200
  ensembl transcript: ENST00000367231
  gene symbol: MTRF1L
  hgvsc: ENST00000367231.5:c.806-1193A>C
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000356199
  ensembl transcript: ENST00000367230
  gene symbol: MTRF1L
  hgvsc: ENST00000367230.1:c.698-1193A>C
  variant of: http://identifiers.org/hgnc/21051
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6862
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 789
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12075
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1745
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2342
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 851
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32996
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 752
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 233
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36178
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 860
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Gln280Pro
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: East Asian
population: African
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: T
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum

6-153312425-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 153312425
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 153312425
    reference: chr 6
allele count: 1
allele frequency: 1.046112645409658e-5
allele num: 95592
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000356199
  ensembl transcript: ENST00000367230
  gene symbol: MTRF1L
  hgvsc: ENST00000367230.1:c.698-1195T>C
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000485283
  gene symbol: MTRF1L
  hgvsc: ENST00000485283.1:n.564T>C
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000461949
  gene symbol: MTRF1L
  hgvsc: ENST00000461949.1:n.375T>C
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000356200
  ensembl transcript: ENST00000367231
  gene symbol: MTRF1L
  hgvsc: ENST00000367231.5:c.806-1195T>C
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000356202
  ensembl transcript: ENST00000367233
  gene symbol: MTRF1L
  hgvsc: ENST00000367233.5:c.837T>C
  hgvsp: ENST00000367233.5:c.837T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000464135
  gene symbol: MTRF1L
  hgvsc: ENST00000464135.1:n.812T>C
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000485512
  gene symbol: MTRF1L
  hgvsc: ENST00000485512.1:n.781-1195T>C
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000414383
  ensembl transcript: ENST00000414771
  gene symbol: MTRF1L
  hgvsc: ENST00000414771.1:c.390T>C
  hgvsp: ENST00000414771.1:c.390T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000415113
  ensembl transcript: ENST00000448966
  gene symbol: MTRF1L
  hgvsc: ENST00000448966.1:c.429T>C
  hgvsp: ENST00000448966.1:c.429T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000463251
  gene symbol: MTRF1L
  hgvsc: ENST00000463251.1:n.710T>C
  variant of: http://identifiers.org/hgnc/21051
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 843
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11962
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2466
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 824
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6932
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32895
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 753
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1737
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 700
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36056
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2458
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Ser279Ser
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
population: Other
reference allele: A
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff

6-153312426-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 153312426
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 153312426
    reference: chr 6
allele count: 1
allele frequency: 1.046287770988533e-5
allele num: 95576
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000485512
  gene symbol: MTRF1L
  hgvsc: ENST00000485512.1:n.781-1196C>G
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000463251
  gene symbol: MTRF1L
  hgvsc: ENST00000463251.1:n.709C>G
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000464135
  gene symbol: MTRF1L
  hgvsc: ENST00000464135.1:n.811C>G
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000415113
  ensembl transcript: ENST00000448966
  gene symbol: MTRF1L
  hgvsc: ENST00000448966.1:c.428C>G
  hgvsp: ENSP00000415113.1:p.Ser143Cys
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000356202
  ensembl transcript: ENST00000367233
  gene symbol: MTRF1L
  hgvsc: ENST00000367233.5:c.836C>G
  hgvsp: ENSP00000356202.5:p.Ser279Cys
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000356200
  ensembl transcript: ENST00000367231
  gene symbol: MTRF1L
  hgvsc: ENST00000367231.5:c.806-1196C>G
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000485283
  gene symbol: MTRF1L
  hgvsc: ENST00000485283.1:n.563C>G
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000461949
  gene symbol: MTRF1L
  hgvsc: ENST00000461949.1:n.374C>G
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000414383
  ensembl transcript: ENST00000414771
  gene symbol: MTRF1L
  hgvsc: ENST00000414771.1:c.389C>G
  hgvsp: ENSP00000414383.1:p.Ser130Cys
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000356199
  ensembl transcript: ENST00000367230
  gene symbol: MTRF1L
  hgvsc: ENST00000367230.1:c.698-1196C>G
  variant of: http://identifiers.org/hgnc/21051
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1742
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 884
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32611
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6987
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 854
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 761
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2624
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11947
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 611
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 282
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35464
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Ser279Cys
num of homozygotes: 0
population: Other
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
reference allele: G
site quality: DP
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum

6-153312432-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 153312432
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 153312432
    reference: chr 6
allele count: 1
allele frequency: 1.040279627163782e-5
allele num: 96128
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000485512
  gene symbol: MTRF1L
  hgvsc: ENST00000485512.1:n.781-1202A>C
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000415113
  ensembl transcript: ENST00000448966
  gene symbol: MTRF1L
  hgvsc: ENST00000448966.1:c.422A>C
  hgvsp: ENSP00000415113.1:p.Glu141Ala
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000461949
  gene symbol: MTRF1L
  hgvsc: ENST00000461949.1:n.368A>C
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000356199
  ensembl transcript: ENST00000367230
  gene symbol: MTRF1L
  hgvsc: ENST00000367230.1:c.698-1202A>C
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000356202
  ensembl transcript: ENST00000367233
  gene symbol: MTRF1L
  hgvsc: ENST00000367233.5:c.830A>C
  hgvsp: ENSP00000356202.5:p.Glu277Ala
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000464135
  gene symbol: MTRF1L
  hgvsc: ENST00000464135.1:n.805A>C
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000485283
  gene symbol: MTRF1L
  hgvsc: ENST00000485283.1:n.557A>C
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000463251
  gene symbol: MTRF1L
  hgvsc: ENST00000463251.1:n.703A>C
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000414383
  ensembl transcript: ENST00000414771
  gene symbol: MTRF1L
  hgvsc: ENST00000414771.1:c.383A>C
  hgvsp: ENSP00000414383.1:p.Glu128Ala
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000356200
  ensembl transcript: ENST00000367231
  gene symbol: MTRF1L
  hgvsc: ENST00000367231.5:c.806-1202A>C
  variant of: http://identifiers.org/hgnc/21051
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2902
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 846
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11727
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 751
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7107
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32464
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 887
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1731
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 541
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 361
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Glu277Ala
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Other
population: Latino
population: African
population: East Asian
reference allele: T
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum

6-153312433-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 153312433
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 153312433
    reference: chr 6
allele count: 1
allele frequency: 1.040474456352096e-5
allele num: 96110
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000414383
  ensembl transcript: ENST00000414771
  gene symbol: MTRF1L
  hgvsc: ENST00000414771.1:c.382G>A
  hgvsp: ENSP00000414383.1:p.Glu128Lys
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000356200
  ensembl transcript: ENST00000367231
  gene symbol: MTRF1L
  hgvsc: ENST00000367231.5:c.806-1203G>A
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000464135
  gene symbol: MTRF1L
  hgvsc: ENST00000464135.1:n.804G>A
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000463251
  gene symbol: MTRF1L
  hgvsc: ENST00000463251.1:n.702G>A
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000356202
  ensembl transcript: ENST00000367233
  gene symbol: MTRF1L
  hgvsc: ENST00000367233.5:c.829G>A
  hgvsp: ENSP00000356202.5:p.Glu277Lys
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000485283
  gene symbol: MTRF1L
  hgvsc: ENST00000485283.1:n.556G>A
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000415113
  ensembl transcript: ENST00000448966
  gene symbol: MTRF1L
  hgvsc: ENST00000448966.1:c.421G>A
  hgvsp: ENSP00000415113.1:p.Glu141Lys
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000461949
  gene symbol: MTRF1L
  hgvsc: ENST00000461949.1:n.367G>A
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000485512
  gene symbol: MTRF1L
  hgvsc: ENST00000485512.1:n.781-1203G>A
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000356199
  ensembl transcript: ENST00000367230
  gene symbol: MTRF1L
  hgvsc: ENST00000367230.1:c.698-1203G>A
  variant of: http://identifiers.org/hgnc/21051
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11700
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32343
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 895
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1762
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7132
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 757
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2973
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 850
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 363
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 606
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Glu277Lys
num of homozygotes: 0
population: African
population: Other
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/6-153312456-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 153312456
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 153312456
    reference: chr 6
allele count: 1
allele frequency: 1.067053651457595e-5
allele num: 93716
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000464135
  gene symbol: MTRF1L
  hgvsc: ENST00000464135.1:n.781G>T
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000485283
  gene symbol: MTRF1L
  hgvsc: ENST00000485283.1:n.533G>T
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000356199
  ensembl transcript: ENST00000367230
  gene symbol: MTRF1L
  hgvsc: ENST00000367230.1:c.698-1226G>T
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000463251
  gene symbol: MTRF1L
  hgvsc: ENST00000463251.1:n.679G>T
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000415113
  ensembl transcript: ENST00000448966
  gene symbol: MTRF1L
  hgvsc: ENST00000448966.1:c.398G>T
  hgvsp: ENSP00000415113.1:p.Gly133Val
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000414383
  ensembl transcript: ENST00000414771
  gene symbol: MTRF1L
  hgvsc: ENST00000414771.1:c.359G>T
  hgvsp: ENSP00000414383.1:p.Gly120Val
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000356200
  ensembl transcript: ENST00000367231
  gene symbol: MTRF1L
  hgvsc: ENST00000367231.5:c.806-1226G>T
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000461949
  gene symbol: MTRF1L
  hgvsc: ENST00000461949.1:n.344G>T
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000356202
  ensembl transcript: ENST00000367233
  gene symbol: MTRF1L
  hgvsc: ENST00000367233.5:c.806G>T
  hgvsp: ENSP00000356202.5:p.Gly269Val
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000485512
  gene symbol: MTRF1L
  hgvsc: ENST00000485512.1:n.781-1226G>T
  variant of: http://identifiers.org/hgnc/21051
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1216
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6637
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1063
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7553
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12507
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 751
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26914
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1763
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Gly269Val
num of homozygotes: 0
population: Other
population: South Asian
population: Latino
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: QD

6-153312456-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 153312456
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 153312456
    reference: chr 6
allele count: 3
allele frequency: 3.201160954372786e-5
allele num: 93716
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000461949
  gene symbol: MTRF1L
  hgvsc: ENST00000461949.1:n.344G>A
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000356199
  ensembl transcript: ENST00000367230
  gene symbol: MTRF1L
  hgvsc: ENST00000367230.1:c.698-1226G>A
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000414383
  ensembl transcript: ENST00000414771
  gene symbol: MTRF1L
  hgvsc: ENST00000414771.1:c.359G>A
  hgvsp: ENSP00000414383.1:p.Gly120Asp
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000415113
  ensembl transcript: ENST00000448966
  gene symbol: MTRF1L
  hgvsc: ENST00000448966.1:c.398G>A
  hgvsp: ENSP00000415113.1:p.Gly133Asp
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000356202
  ensembl transcript: ENST00000367233
  gene symbol: MTRF1L
  hgvsc: ENST00000367233.5:c.806G>A
  hgvsp: ENSP00000356202.5:p.Gly269Asp
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000485283
  gene symbol: MTRF1L
  hgvsc: ENST00000485283.1:n.533G>A
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000463251
  gene symbol: MTRF1L
  hgvsc: ENST00000463251.1:n.679G>A
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000356200
  ensembl transcript: ENST00000367231
  gene symbol: MTRF1L
  hgvsc: ENST00000367231.5:c.806-1226G>A
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000485512
  gene symbol: MTRF1L
  hgvsc: ENST00000485512.1:n.781-1226G>A
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000464135
  gene symbol: MTRF1L
  hgvsc: ENST00000464135.1:n.781G>A
  variant of: http://identifiers.org/hgnc/21051
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6637
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7553
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1063
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 26914
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1216
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1763
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12507
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 751
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2536
  bin: 9.75e1
  variant carriers: 3
hgvs: p.Gly269Asp
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: DP

http://identifiers.org/exac.variant/6-153312470-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 153312470
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 153312470
    reference: chr 6
allele count: 1
allele frequency: 1.155054518573277e-5
allele num: 86576
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000356202
  ensembl transcript: ENST00000367233
  gene symbol: MTRF1L
  hgvsc: ENST00000367233.5:c.806-14G>T
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000463251
  gene symbol: MTRF1L
  hgvsc: ENST00000463251.1:n.679-14G>T
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000415113
  ensembl transcript: ENST00000448966
  gene symbol: MTRF1L
  hgvsc: ENST00000448966.1:c.398-14G>T
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000485283
  gene symbol: MTRF1L
  hgvsc: ENST00000485283.1:n.533-14G>T
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000464135
  gene symbol: MTRF1L
  hgvsc: ENST00000464135.1:n.781-14G>T
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000485512
  gene symbol: MTRF1L
  hgvsc: ENST00000485512.1:n.781-1240G>T
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000461949
  gene symbol: MTRF1L
  hgvsc: ENST00000461949.1:n.330G>T
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000356199
  ensembl transcript: ENST00000367230
  gene symbol: MTRF1L
  hgvsc: ENST00000367230.1:c.698-1240G>T
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000414383
  ensembl transcript: ENST00000414771
  gene symbol: MTRF1L
  hgvsc: ENST00000414771.1:c.359-14G>T
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000356200
  ensembl transcript: ENST00000367231
  gene symbol: MTRF1L
  hgvsc: ENST00000367231.5:c.806-1240G>T
  variant of: http://identifiers.org/hgnc/21051
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14140
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5701
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1996
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14608
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 750
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2854
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16574
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1686
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19829
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24716
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1836
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 157
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: African
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: ClippingRankSum

6-153312470-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 153312470
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 153312470
    reference: chr 6
allele count: 2
allele frequency: 2.310109037146553e-5
allele num: 86576
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000485512
  gene symbol: MTRF1L
  hgvsc: ENST00000485512.1:n.781-1240G>A
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000461949
  gene symbol: MTRF1L
  hgvsc: ENST00000461949.1:n.330G>A
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000356199
  ensembl transcript: ENST00000367230
  gene symbol: MTRF1L
  hgvsc: ENST00000367230.1:c.698-1240G>A
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000464135
  gene symbol: MTRF1L
  hgvsc: ENST00000464135.1:n.781-14G>A
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000414383
  ensembl transcript: ENST00000414771
  gene symbol: MTRF1L
  hgvsc: ENST00000414771.1:c.359-14G>A
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000463251
  gene symbol: MTRF1L
  hgvsc: ENST00000463251.1:n.679-14G>A
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000485283
  gene symbol: MTRF1L
  hgvsc: ENST00000485283.1:n.533-14G>A
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000415113
  ensembl transcript: ENST00000448966
  gene symbol: MTRF1L
  hgvsc: ENST00000448966.1:c.398-14G>A
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000356202
  ensembl transcript: ENST00000367233
  gene symbol: MTRF1L
  hgvsc: ENST00000367233.5:c.806-14G>A
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000356200
  ensembl transcript: ENST00000367231
  gene symbol: MTRF1L
  hgvsc: ENST00000367231.5:c.806-1240G>A
  variant of: http://identifiers.org/hgnc/21051
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16574
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 750
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5701
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14140
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2854
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1996
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1686
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14608
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 644
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 566
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 356
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: South Asian
population: African
population: Latino
population: East Asian
reference allele: C
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: DP

6-153312471-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 153312471
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 153312471
    reference: chr 6
allele count: 2
allele frequency: 2.322340919647004e-5
allele num: 86120
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000485512
  gene symbol: MTRF1L
  hgvsc: ENST00000485512.1:n.781-1241C>T
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000356202
  ensembl transcript: ENST00000367233
  gene symbol: MTRF1L
  hgvsc: ENST00000367233.5:c.806-15C>T
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000463251
  gene symbol: MTRF1L
  hgvsc: ENST00000463251.1:n.679-15C>T
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000464135
  gene symbol: MTRF1L
  hgvsc: ENST00000464135.1:n.781-15C>T
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000485283
  gene symbol: MTRF1L
  hgvsc: ENST00000485283.1:n.533-15C>T
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000356199
  ensembl transcript: ENST00000367230
  gene symbol: MTRF1L
  hgvsc: ENST00000367230.1:c.698-1241C>T
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000461949
  gene symbol: MTRF1L
  hgvsc: ENST00000461949.1:n.329C>T
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000414383
  ensembl transcript: ENST00000414771
  gene symbol: MTRF1L
  hgvsc: ENST00000414771.1:c.359-15C>T
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000415113
  ensembl transcript: ENST00000448966
  gene symbol: MTRF1L
  hgvsc: ENST00000448966.1:c.398-15C>T
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000356200
  ensembl transcript: ENST00000367231
  gene symbol: MTRF1L
  hgvsc: ENST00000367231.5:c.806-1241C>T
  variant of: http://identifiers.org/hgnc/21051
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2010
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15974
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 748
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5509
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14207
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3024
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1634
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15194
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1919
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 124
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 356
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 475
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: Other
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum

6-153312478-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 153312478
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 153312478
    reference: chr 6
allele count: 1
allele frequency: 1.235147353079222e-5
allele num: 80962
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000414383
  ensembl transcript: ENST00000414771
  gene symbol: MTRF1L
  hgvsc: ENST00000414771.1:c.359-22T>C
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000464135
  gene symbol: MTRF1L
  hgvsc: ENST00000464135.1:n.781-22T>C
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000461949
  gene symbol: MTRF1L
  hgvsc: ENST00000461949.1:n.322T>C
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000485512
  gene symbol: MTRF1L
  hgvsc: ENST00000485512.1:n.781-1248T>C
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000485283
  gene symbol: MTRF1L
  hgvsc: ENST00000485283.1:n.533-22T>C
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000415113
  ensembl transcript: ENST00000448966
  gene symbol: MTRF1L
  hgvsc: ENST00000448966.1:c.398-22T>C
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000356199
  ensembl transcript: ENST00000367230
  gene symbol: MTRF1L
  hgvsc: ENST00000367230.1:c.698-1248T>C
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000356202
  ensembl transcript: ENST00000367233
  gene symbol: MTRF1L
  hgvsc: ENST00000367233.5:c.806-22T>C
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000463251
  gene symbol: MTRF1L
  hgvsc: ENST00000463251.1:n.679-22T>C
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000356200
  ensembl transcript: ENST00000367231
  gene symbol: MTRF1L
  hgvsc: ENST00000367231.5:c.806-1248T>C
  variant of: http://identifiers.org/hgnc/21051
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 741
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11095
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2679
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14604
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4976
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3878
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1401
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18806
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2994
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 481
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3074
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 539
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
reference allele: A
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: QD

6-153312480-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 153312480
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 153312480
    reference: chr 6
allele count: 1
allele frequency: 1.232589670898558e-5
allele num: 81130
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000414383
  ensembl transcript: ENST00000414771
  gene symbol: MTRF1L
  hgvsc: ENST00000414771.1:c.359-24T>C
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000415113
  ensembl transcript: ENST00000448966
  gene symbol: MTRF1L
  hgvsc: ENST00000448966.1:c.398-24T>C
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000461949
  gene symbol: MTRF1L
  hgvsc: ENST00000461949.1:n.320T>C
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000463251
  gene symbol: MTRF1L
  hgvsc: ENST00000463251.1:n.679-24T>C
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000356199
  ensembl transcript: ENST00000367230
  gene symbol: MTRF1L
  hgvsc: ENST00000367230.1:c.698-1250T>C
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000356200
  ensembl transcript: ENST00000367231
  gene symbol: MTRF1L
  hgvsc: ENST00000367231.5:c.806-1250T>C
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000485512
  gene symbol: MTRF1L
  hgvsc: ENST00000485512.1:n.781-1250T>C
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000485283
  gene symbol: MTRF1L
  hgvsc: ENST00000485283.1:n.533-24T>C
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000356202
  ensembl transcript: ENST00000367233
  gene symbol: MTRF1L
  hgvsc: ENST00000367233.5:c.806-24T>C
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000464135
  gene symbol: MTRF1L
  hgvsc: ENST00000464135.1:n.781-24T>C
  variant of: http://identifiers.org/hgnc/21051
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14669
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3874
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 738
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2617
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1372
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18789
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5003
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11119
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 758
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1291
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 225
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: Other
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: QD

http://identifiers.org/exac.variant/6-153312482-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 153312482
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 153312482
    reference: chr 6
allele count: 1
allele frequency: 1.262562496843594e-5
allele num: 79204
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000461949
  gene symbol: MTRF1L
  hgvsc: ENST00000461949.1:n.318T>G
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000464135
  gene symbol: MTRF1L
  hgvsc: ENST00000464135.1:n.781-26T>G
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000414383
  ensembl transcript: ENST00000414771
  gene symbol: MTRF1L
  hgvsc: ENST00000414771.1:c.359-26T>G
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000485283
  gene symbol: MTRF1L
  hgvsc: ENST00000485283.1:n.533-26T>G
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000356200
  ensembl transcript: ENST00000367231
  gene symbol: MTRF1L
  hgvsc: ENST00000367231.5:c.806-1252T>G
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000485512
  gene symbol: MTRF1L
  hgvsc: ENST00000485512.1:n.781-1252T>G
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000356202
  ensembl transcript: ENST00000367233
  gene symbol: MTRF1L
  hgvsc: ENST00000367233.5:c.806-26T>G
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000356199
  ensembl transcript: ENST00000367230
  gene symbol: MTRF1L
  hgvsc: ENST00000367230.1:c.698-1252T>G
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000463251
  gene symbol: MTRF1L
  hgvsc: ENST00000463251.1:n.679-26T>G
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000415113
  ensembl transcript: ENST00000448966
  gene symbol: MTRF1L
  hgvsc: ENST00000448966.1:c.398-26T>G
  variant of: http://identifiers.org/hgnc/21051
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10000
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19111
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5700
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1302
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3441
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 745
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14789
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3041
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2533
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1049
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3329
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6268
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: South Asian
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: DP
site quality: ClippingRankSum

6-153312490-T-TA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 153312490
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 153312491
    reference: chr 6
allele count: 3
allele frequency: 4.082076960757634e-5
allele num: 73492
alternate allele: TA
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000464135
  gene symbol: MTRF1L
  hgvsc: ENST00000464135.1:n.781-35dupT
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000414383
  ensembl transcript: ENST00000414771
  gene symbol: MTRF1L
  hgvsc: ENST00000414771.1:c.359-35dupT
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000415113
  ensembl transcript: ENST00000448966
  gene symbol: MTRF1L
  hgvsc: ENST00000448966.1:c.398-35dupT
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000356202
  ensembl transcript: ENST00000367233
  gene symbol: MTRF1L
  hgvsc: ENST00000367233.5:c.806-35dupT
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000485512
  gene symbol: MTRF1L
  hgvsc: ENST00000485512.1:n.781-1261dupT
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000461949
  gene symbol: MTRF1L
  hgvsc: ENST00000461949.1:n.309dupT
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000463251
  gene symbol: MTRF1L
  hgvsc: ENST00000463251.1:n.679-35dupT
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000485283
  gene symbol: MTRF1L
  hgvsc: ENST00000485283.1:n.533-35dupT
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000356199
  ensembl transcript: ENST00000367230
  gene symbol: MTRF1L
  hgvsc: ENST00000367230.1:c.698-1261dupT
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000356200
  ensembl transcript: ENST00000367231
  gene symbol: MTRF1L
  hgvsc: ENST00000367231.5:c.806-1261dupT
  variant of: http://identifiers.org/hgnc/21051
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18470
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1243
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15412
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7524
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 735
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2503
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4785
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7281
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1687
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 534
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4286
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2235
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: Other
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD

6-153312497-AT-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 153312497
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 153312496
    reference: chr 6
allele count: 2
allele frequency: 2.908414041822994e-5
allele num: 68766
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000356199
  ensembl transcript: ENST00000367230
  gene symbol: MTRF1L
  hgvsc: ENST00000367230.1:c.698-1268delA
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000415113
  ensembl transcript: ENST00000448966
  gene symbol: MTRF1L
  hgvsc: ENST00000448966.1:c.398-42delA
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000464135
  gene symbol: MTRF1L
  hgvsc: ENST00000464135.1:n.781-42delA
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000461949
  gene symbol: MTRF1L
  hgvsc: ENST00000461949.1:n.302delA
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000414383
  ensembl transcript: ENST00000414771
  gene symbol: MTRF1L
  hgvsc: ENST00000414771.1:c.359-42delA
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000356200
  ensembl transcript: ENST00000367231
  gene symbol: MTRF1L
  hgvsc: ENST00000367231.5:c.806-1268delA
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000485283
  gene symbol: MTRF1L
  hgvsc: ENST00000485283.1:n.533-42delA
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000463251
  gene symbol: MTRF1L
  hgvsc: ENST00000463251.1:n.679-42delA
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000485512
  gene symbol: MTRF1L
  hgvsc: ENST00000485512.1:n.781-1268delA
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000356202
  ensembl transcript: ENST00000367233
  gene symbol: MTRF1L
  hgvsc: ENST00000367233.5:c.806-42delA
  variant of: http://identifiers.org/hgnc/21051
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6054
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17253
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2094
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1197
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8086
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16279
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 731
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6058
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 479
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2534
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1084
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
population: Other
population: African
population: European (Non-Finnish)
reference allele: AT
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD

6-153312499-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 153312499
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 153312499
    reference: chr 6
allele count: 2
allele frequency: 3.043862052171795e-5
allele num: 65706
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000356202
  ensembl transcript: ENST00000367233
  gene symbol: MTRF1L
  hgvsc: ENST00000367233.5:c.806-43G>A
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000485283
  gene symbol: MTRF1L
  hgvsc: ENST00000485283.1:n.533-43G>A
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000415113
  ensembl transcript: ENST00000448966
  gene symbol: MTRF1L
  hgvsc: ENST00000448966.1:c.398-43G>A
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000356200
  ensembl transcript: ENST00000367231
  gene symbol: MTRF1L
  hgvsc: ENST00000367231.5:c.806-1269G>A
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000356199
  ensembl transcript: ENST00000367230
  gene symbol: MTRF1L
  hgvsc: ENST00000367230.1:c.698-1269G>A
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000485512
  gene symbol: MTRF1L
  hgvsc: ENST00000485512.1:n.781-1269G>A
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000461949
  gene symbol: MTRF1L
  hgvsc: ENST00000461949.1:n.301G>A
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000414383
  ensembl transcript: ENST00000414771
  gene symbol: MTRF1L
  hgvsc: ENST00000414771.1:c.359-43G>A
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000464135
  gene symbol: MTRF1L
  hgvsc: ENST00000464135.1:n.781-43G>A
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000463251
  gene symbol: MTRF1L
  hgvsc: ENST00000463251.1:n.679-43G>A
  variant of: http://identifiers.org/hgnc/21051
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6082
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 735
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6032
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18440
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8139
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15087
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1187
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1970
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2777
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2535
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 4360
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 435
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: South Asian
population: African
reference allele: C
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum

6-153312499-CTTCTT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 153312499
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 153312494
    reference: chr 6
allele count: 2
allele frequency: 3.043862052171795e-5
allele num: 65706
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000356202
  ensembl transcript: ENST00000367233
  gene symbol: MTRF1L
  hgvsc: ENST00000367233.5:c.806-48_806-44delAAGAA
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000414383
  ensembl transcript: ENST00000414771
  gene symbol: MTRF1L
  hgvsc: ENST00000414771.1:c.359-48_359-44delAAGAA
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000415113
  ensembl transcript: ENST00000448966
  gene symbol: MTRF1L
  hgvsc: ENST00000448966.1:c.398-48_398-44delAAGAA
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000461949
  gene symbol: MTRF1L
  hgvsc: ENST00000461949.1:n.296_300delAAGAA
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000485283
  gene symbol: MTRF1L
  hgvsc: ENST00000485283.1:n.533-48_533-44delAAGAA
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000485512
  gene symbol: MTRF1L
  hgvsc: ENST00000485512.1:n.781-1274_781-1270delAAGAA
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000356199
  ensembl transcript: ENST00000367230
  gene symbol: MTRF1L
  hgvsc: ENST00000367230.1:c.698-1274_698-1270delAAGAA
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000463251
  gene symbol: MTRF1L
  hgvsc: ENST00000463251.1:n.679-48_679-44delAAGAA
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000356200
  ensembl transcript: ENST00000367231
  gene symbol: MTRF1L
  hgvsc: ENST00000367231.5:c.806-1274_806-1270delAAGAA
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000464135
  gene symbol: MTRF1L
  hgvsc: ENST00000464135.1:n.781-48_781-44delAAGAA
  variant of: http://identifiers.org/hgnc/21051
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1970
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6032
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6082
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15087
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8139
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18440
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 735
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1187
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3575
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 357
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9867
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2777
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: CTTCTT
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff

6-153312504-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 153312504
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 153312504
    reference: chr 6
allele count: 1
allele frequency: 1.641982200912942e-5
allele num: 60902
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000356199
  ensembl transcript: ENST00000367230
  gene symbol: MTRF1L
  hgvsc: ENST00000367230.1:c.698-1274A>G
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000461949
  gene symbol: MTRF1L
  hgvsc: ENST00000461949.1:n.296A>G
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000464135
  gene symbol: MTRF1L
  hgvsc: ENST00000464135.1:n.781-48A>G
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000415113
  ensembl transcript: ENST00000448966
  gene symbol: MTRF1L
  hgvsc: ENST00000448966.1:c.398-48A>G
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000356202
  ensembl transcript: ENST00000367233
  gene symbol: MTRF1L
  hgvsc: ENST00000367233.5:c.806-48A>G
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000485512
  gene symbol: MTRF1L
  hgvsc: ENST00000485512.1:n.781-1274A>G
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000463251
  gene symbol: MTRF1L
  hgvsc: ENST00000463251.1:n.679-48A>G
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000356200
  ensembl transcript: ENST00000367231
  gene symbol: MTRF1L
  hgvsc: ENST00000367231.5:c.806-1274A>G
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000485283
  gene symbol: MTRF1L
  hgvsc: ENST00000485283.1:n.533-48A>G
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000414383
  ensembl transcript: ENST00000414771
  gene symbol: MTRF1L
  hgvsc: ENST00000414771.1:c.359-48A>G
  variant of: http://identifiers.org/hgnc/21051
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1183
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20084
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1938
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13444
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 728
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8304
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6108
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5784
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1297
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 480
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9474
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4571
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
population: Latino
reference allele: T
site quality: DP
site quality: FS
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum

6-153312507-CTTA-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 153312507
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 153312504
    reference: chr 6
allele count: 0
allele frequency: 0.0e0
allele num: 59536
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000485512
  gene symbol: MTRF1L
  hgvsc: ENST00000485512.1:n.781-1280_781-1278delTAA
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000415113
  ensembl transcript: ENST00000448966
  gene symbol: MTRF1L
  hgvsc: ENST00000448966.1:c.398-54_398-52delTAA
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000414383
  ensembl transcript: ENST00000414771
  gene symbol: MTRF1L
  hgvsc: ENST00000414771.1:c.359-54_359-52delTAA
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000356200
  ensembl transcript: ENST00000367231
  gene symbol: MTRF1L
  hgvsc: ENST00000367231.5:c.806-1280_806-1278delTAA
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000464135
  gene symbol: MTRF1L
  hgvsc: ENST00000464135.1:n.781-54_781-52delTAA
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000461949
  gene symbol: MTRF1L
  hgvsc: ENST00000461949.1:n.290_292delTAA
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000356202
  ensembl transcript: ENST00000367233
  gene symbol: MTRF1L
  hgvsc: ENST00000367233.5:c.806-54_806-52delTAA
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000485283
  gene symbol: MTRF1L
  hgvsc: ENST00000485283.1:n.533-54_533-52delTAA
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000356199
  ensembl transcript: ENST00000367230
  gene symbol: MTRF1L
  hgvsc: ENST00000367230.1:c.698-1280_698-1278delTAA
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000463251
  gene symbol: MTRF1L
  hgvsc: ENST00000463251.1:n.679-54_679-52delTAA
  variant of: http://identifiers.org/hgnc/21051
canonical: false
consequence: non coding transcript exon
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8356
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1189
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20310
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6059
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13261
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5683
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 737
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1975
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 429
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4407
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2804
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1884
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
reference allele: CTTA
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ

6-153313942-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 153313942
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 153313942
    reference: chr 6
allele count: 9
allele frequency: 7.45687440966411e-5
allele num: 120694
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000356199
  ensembl transcript: ENST00000367230
  gene symbol: MTRF1L
  hgvsc: ENST00000367230.1:c.697+50A>G
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000464135
  gene symbol: MTRF1L
  hgvsc: ENST00000464135.1:n.780+50A>G
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000485283
  gene symbol: MTRF1L
  hgvsc: ENST00000485283.1:n.532+50A>G
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000485512
  gene symbol: MTRF1L
  hgvsc: ENST00000485512.1:n.780+50A>G
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000461949
  gene symbol: MTRF1L
  hgvsc: ENST00000461949.1:n.248+50A>G
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000463251
  gene symbol: MTRF1L
  hgvsc: ENST00000463251.1:n.678+50A>G
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000415113
  ensembl transcript: ENST00000448966
  gene symbol: MTRF1L
  hgvsc: ENST00000448966.1:c.397+50A>G
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000356200
  ensembl transcript: ENST00000367231
  gene symbol: MTRF1L
  hgvsc: ENST00000367231.5:c.805+50A>G
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000356202
  ensembl transcript: ENST00000367233
  gene symbol: MTRF1L
  hgvsc: ENST00000367233.5:c.805+50A>G
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000414383
  ensembl transcript: ENST00000414771
  gene symbol: MTRF1L
  hgvsc: ENST00000414771.1:c.358+50A>G
  variant of: http://identifiers.org/hgnc/21051
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1102
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18706
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2295
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14551
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4256
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1236
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1917
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7729
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 763
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 659
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5336
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5240
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 588
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 703
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: European (Finnish)
population: South Asian
population: Latino
population: European (Non-Finnish)
population: East Asian
reference allele: T
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: FS
site quality: VQSLOD

http://identifiers.org/exac.variant/6-153313946-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 153313946
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 153313946
    reference: chr 6
allele count: 1
allele frequency: 8.285278716776033e-6
allele num: 120696
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000485512
  gene symbol: MTRF1L
  hgvsc: ENST00000485512.1:n.780+46T>G
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000356199
  ensembl transcript: ENST00000367230
  gene symbol: MTRF1L
  hgvsc: ENST00000367230.1:c.697+46T>G
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000356202
  ensembl transcript: ENST00000367233
  gene symbol: MTRF1L
  hgvsc: ENST00000367233.5:c.805+46T>G
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000485283
  gene symbol: MTRF1L
  hgvsc: ENST00000485283.1:n.532+46T>G
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000463251
  gene symbol: MTRF1L
  hgvsc: ENST00000463251.1:n.678+46T>G
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000461949
  gene symbol: MTRF1L
  hgvsc: ENST00000461949.1:n.248+46T>G
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000464135
  gene symbol: MTRF1L
  hgvsc: ENST00000464135.1:n.780+46T>G
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000356200
  ensembl transcript: ENST00000367231
  gene symbol: MTRF1L
  hgvsc: ENST00000367231.5:c.805+46T>G
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000415113
  ensembl transcript: ENST00000448966
  gene symbol: MTRF1L
  hgvsc: ENST00000448966.1:c.397+46T>G
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000414383
  ensembl transcript: ENST00000414771
  gene symbol: MTRF1L
  hgvsc: ENST00000414771.1:c.358+46T>G
  variant of: http://identifiers.org/hgnc/21051
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 763
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18783
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1485
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5726
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4260
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 659
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7727
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2293
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1089
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14545
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1234
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 506
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8584
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5215
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 614
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 447
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
population: African
population: East Asian
population: South Asian
reference allele: A
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: DP

6-153313951-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 153313951
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 153313951
    reference: chr 6
allele count: 1
allele frequency: 8.283219853221344e-6
allele num: 120726
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000464135
  gene symbol: MTRF1L
  hgvsc: ENST00000464135.1:n.780+41A>T
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000461949
  gene symbol: MTRF1L
  hgvsc: ENST00000461949.1:n.248+41A>T
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000414383
  ensembl transcript: ENST00000414771
  gene symbol: MTRF1L
  hgvsc: ENST00000414771.1:c.358+41A>T
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000485283
  gene symbol: MTRF1L
  hgvsc: ENST00000485283.1:n.532+41A>T
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000356200
  ensembl transcript: ENST00000367231
  gene symbol: MTRF1L
  hgvsc: ENST00000367231.5:c.805+41A>T
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000356202
  ensembl transcript: ENST00000367233
  gene symbol: MTRF1L
  hgvsc: ENST00000367233.5:c.805+41A>T
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000356199
  ensembl transcript: ENST00000367230
  gene symbol: MTRF1L
  hgvsc: ENST00000367230.1:c.697+41A>T
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000485512
  gene symbol: MTRF1L
  hgvsc: ENST00000485512.1:n.780+41A>T
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000463251
  gene symbol: MTRF1L
  hgvsc: ENST00000463251.1:n.678+41A>T
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000415113
  ensembl transcript: ENST00000448966
  gene symbol: MTRF1L
  hgvsc: ENST00000448966.1:c.397+41A>T
  variant of: http://identifiers.org/hgnc/21051
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1234
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 762
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1051
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4259
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1031
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7724
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6165
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14554
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2292
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 659
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18841
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3335
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 431
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: T
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: MQ

6-153313961-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 153313961
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 153313961
    reference: chr 6
allele count: 3
allele frequency: 2.483772685123857e-5
allele num: 120784
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000485512
  gene symbol: MTRF1L
  hgvsc: ENST00000485512.1:n.780+31C>T
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000461949
  gene symbol: MTRF1L
  hgvsc: ENST00000461949.1:n.248+31C>T
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000415113
  ensembl transcript: ENST00000448966
  gene symbol: MTRF1L
  hgvsc: ENST00000448966.1:c.397+31C>T
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000356199
  ensembl transcript: ENST00000367230
  gene symbol: MTRF1L
  hgvsc: ENST00000367230.1:c.697+31C>T
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000463251
  gene symbol: MTRF1L
  hgvsc: ENST00000463251.1:n.678+31C>T
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000356200
  ensembl transcript: ENST00000367231
  gene symbol: MTRF1L
  hgvsc: ENST00000367231.5:c.805+31C>T
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000485283
  gene symbol: MTRF1L
  hgvsc: ENST00000485283.1:n.532+31C>T
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000464135
  gene symbol: MTRF1L
  hgvsc: ENST00000464135.1:n.780+31C>T
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000414383
  ensembl transcript: ENST00000414771
  gene symbol: MTRF1L
  hgvsc: ENST00000414771.1:c.358+31C>T
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000356202
  ensembl transcript: ENST00000367233
  gene symbol: MTRF1L
  hgvsc: ENST00000367233.5:c.805+31C>T
  variant of: http://identifiers.org/hgnc/21051
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6990
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7721
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 715
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19039
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2292
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4257
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1236
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14578
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 659
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 763
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3335
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24519
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3945
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: G
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: DP

6-153313968-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 153313968
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 153313968
    reference: chr 6
allele count: 1
allele frequency: 8.272393368849475e-6
allele num: 120884
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000461949
  gene symbol: MTRF1L
  hgvsc: ENST00000461949.1:n.248+24A>G
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000414383
  ensembl transcript: ENST00000414771
  gene symbol: MTRF1L
  hgvsc: ENST00000414771.1:c.358+24A>G
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000356202
  ensembl transcript: ENST00000367233
  gene symbol: MTRF1L
  hgvsc: ENST00000367233.5:c.805+24A>G
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000356199
  ensembl transcript: ENST00000367230
  gene symbol: MTRF1L
  hgvsc: ENST00000367230.1:c.697+24A>G
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000485512
  gene symbol: MTRF1L
  hgvsc: ENST00000485512.1:n.780+24A>G
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000356200
  ensembl transcript: ENST00000367231
  gene symbol: MTRF1L
  hgvsc: ENST00000367231.5:c.805+24A>G
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000463251
  gene symbol: MTRF1L
  hgvsc: ENST00000463251.1:n.678+24A>G
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000464135
  gene symbol: MTRF1L
  hgvsc: ENST00000464135.1:n.780+24A>G
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000485283
  gene symbol: MTRF1L
  hgvsc: ENST00000485283.1:n.532+24A>G
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000415113
  ensembl transcript: ENST00000448966
  gene symbol: MTRF1L
  hgvsc: ENST00000448966.1:c.397+24A>G
  variant of: http://identifiers.org/hgnc/21051
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1234
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14591
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4259
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7721
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2291
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19199
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7301
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 660
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 762
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 204
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2661
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3341
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: Latino
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: T
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum

6-153313980-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 153313980
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 153313980
    reference: chr 6
allele count: 1
allele frequency: 8.264599414866361e-6
allele num: 120998
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000356199
  ensembl transcript: ENST00000367230
  gene symbol: MTRF1L
  hgvsc: ENST00000367230.1:c.697+12T>C
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000485512
  gene symbol: MTRF1L
  hgvsc: ENST00000485512.1:n.780+12T>C
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000414383
  ensembl transcript: ENST00000414771
  gene symbol: MTRF1L
  hgvsc: ENST00000414771.1:c.358+12T>C
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000461949
  gene symbol: MTRF1L
  hgvsc: ENST00000461949.1:n.248+12T>C
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000464135
  gene symbol: MTRF1L
  hgvsc: ENST00000464135.1:n.780+12T>C
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000415113
  ensembl transcript: ENST00000448966
  gene symbol: MTRF1L
  hgvsc: ENST00000448966.1:c.397+12T>C
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000485283
  gene symbol: MTRF1L
  hgvsc: ENST00000485283.1:n.532+12T>C
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000463251
  gene symbol: MTRF1L
  hgvsc: ENST00000463251.1:n.678+12T>C
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000356202
  ensembl transcript: ENST00000367233
  gene symbol: MTRF1L
  hgvsc: ENST00000367233.5:c.805+12T>C
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000356200
  ensembl transcript: ENST00000367231
  gene symbol: MTRF1L
  hgvsc: ENST00000367231.5:c.805+12T>C
  variant of: http://identifiers.org/hgnc/21051
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7493
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14605
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2291
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4256
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1234
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 762
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19351
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 659
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7722
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1693
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Latino
population: African
population: European (Finnish)
population: Other
reference allele: A
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: DP

6-153313989-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 153313989
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 153313989
    reference: chr 6
allele count: 11
allele frequency: 9.083102127097371e-5
allele num: 121104
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000356199
  ensembl transcript: ENST00000367230
  gene symbol: MTRF1L
  hgvsc: ENST00000367230.1:c.697+3G>A
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000356202
  ensembl transcript: ENST00000367233
  gene symbol: MTRF1L
  hgvsc: ENST00000367233.5:c.805+3G>A
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000463251
  gene symbol: MTRF1L
  hgvsc: ENST00000463251.1:n.678+3G>A
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000464135
  gene symbol: MTRF1L
  hgvsc: ENST00000464135.1:n.780+3G>A
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000485512
  gene symbol: MTRF1L
  hgvsc: ENST00000485512.1:n.780+3G>A
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000356200
  ensembl transcript: ENST00000367231
  gene symbol: MTRF1L
  hgvsc: ENST00000367231.5:c.805+3G>A
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000415113
  ensembl transcript: ENST00000448966
  gene symbol: MTRF1L
  hgvsc: ENST00000448966.1:c.397+3G>A
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000461949
  gene symbol: MTRF1L
  hgvsc: ENST00000461949.1:n.248+3G>A
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000414383
  ensembl transcript: ENST00000414771
  gene symbol: MTRF1L
  hgvsc: ENST00000414771.1:c.358+3G>A
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000485283
  gene symbol: MTRF1L
  hgvsc: ENST00000485283.1:n.532+3G>A
  variant of: http://identifiers.org/hgnc/21051
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7602
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 761
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 506
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2292
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7723
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 663
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1233
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19418
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14623
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4258
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 3.25e1
  variant carriers: 0
hgvs: c.805+3G>A
num of homozygotes: 1
population: Latino
population: African
population: South Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
reference allele: C
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum

6-153313991-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 153313991
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 153313991
    reference: chr 6
allele count: 1
allele frequency: 8.255320554097116e-6
allele num: 121134
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000464135
  gene symbol: MTRF1L
  hgvsc: ENST00000464135.1:n.780+1G>A
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000463251
  gene symbol: MTRF1L
  hgvsc: ENST00000463251.1:n.678+1G>A
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000461949
  gene symbol: MTRF1L
  hgvsc: ENST00000461949.1:n.248+1G>A
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000356200
  ensembl transcript: ENST00000367231
  gene symbol: MTRF1L
  hgvsc: ENST00000367231.5:c.805+1G>A
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000485512
  gene symbol: MTRF1L
  hgvsc: ENST00000485512.1:n.780+1G>A
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: true
  consequence: splice_donor_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000356202
  ensembl transcript: ENST00000367233
  gene symbol: MTRF1L
  hgvsc: ENST00000367233.5:c.805+1G>A
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000414383
  ensembl transcript: ENST00000414771
  gene symbol: MTRF1L
  hgvsc: ENST00000414771.1:c.358+1G>A
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000356199
  ensembl transcript: ENST00000367230
  gene symbol: MTRF1L
  hgvsc: ENST00000367230.1:c.697+1G>A
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000485283
  gene symbol: MTRF1L
  hgvsc: ENST00000485283.1:n.532+1G>A
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000415113
  ensembl transcript: ENST00000448966
  gene symbol: MTRF1L
  hgvsc: ENST00000448966.1:c.397+1G>A
  variant of: http://identifiers.org/hgnc/21051
canonical: true
consequence: splice donor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14624
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4258
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19444
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2289
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1232
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7614
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 761
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 659
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7725
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 2.75e1
  variant carriers: 0
hgvs: c.805+1G>A
num of homozygotes: 0
population: African
population: European (Finnish)
population: Other
population: Latino
population: European (Non-Finnish)
population: South Asian
population: East Asian
reference allele: C
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP

6-153313995-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 153313995
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 153313995
    reference: chr 6
allele count: 1
allele frequency: 8.253685270473266e-6
allele num: 121158
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000461949
  gene symbol: MTRF1L
  hgvsc: ENST00000461949.1:n.245A>G
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000415113
  ensembl transcript: ENST00000448966
  gene symbol: MTRF1L
  hgvsc: ENST00000448966.1:c.394A>G
  hgvsp: ENSP00000415113.1:p.Thr132Ala
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000485512
  gene symbol: MTRF1L
  hgvsc: ENST00000485512.1:n.777A>G
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000464135
  gene symbol: MTRF1L
  hgvsc: ENST00000464135.1:n.777A>G
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000356202
  ensembl transcript: ENST00000367233
  gene symbol: MTRF1L
  hgvsc: ENST00000367233.5:c.802A>G
  hgvsp: ENSP00000356202.5:p.Thr268Ala
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000414383
  ensembl transcript: ENST00000414771
  gene symbol: MTRF1L
  hgvsc: ENST00000414771.1:c.355A>G
  hgvsp: ENSP00000414383.1:p.Thr119Ala
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000356200
  ensembl transcript: ENST00000367231
  gene symbol: MTRF1L
  hgvsc: ENST00000367231.5:c.802A>G
  hgvsp: ENSP00000356200.5:p.Thr268Ala
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000485283
  gene symbol: MTRF1L
  hgvsc: ENST00000485283.1:n.529A>G
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000356199
  ensembl transcript: ENST00000367230
  gene symbol: MTRF1L
  hgvsc: ENST00000367230.1:c.694A>G
  hgvsp: ENSP00000356199.1:p.Thr232Ala
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000463251
  gene symbol: MTRF1L
  hgvsc: ENST00000463251.1:n.675A>G
  variant of: http://identifiers.org/hgnc/21051
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7726
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14621
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4257
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1232
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7648
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19474
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2289
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 659
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 761
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9130
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2659
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Thr268Ala
num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: East Asian
population: Other
reference allele: T
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: DP

6-153313997-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 153313997
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 153313997
    reference: chr 6
allele count: 1
allele frequency: 8.252731654177533e-6
allele num: 121172
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000356200
  ensembl transcript: ENST00000367231
  gene symbol: MTRF1L
  hgvsc: ENST00000367231.5:c.800C>T
  hgvsp: ENSP00000356200.5:p.Pro267Leu
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000415113
  ensembl transcript: ENST00000448966
  gene symbol: MTRF1L
  hgvsc: ENST00000448966.1:c.392C>T
  hgvsp: ENSP00000415113.1:p.Pro131Leu
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000414383
  ensembl transcript: ENST00000414771
  gene symbol: MTRF1L
  hgvsc: ENST00000414771.1:c.353C>T
  hgvsp: ENSP00000414383.1:p.Pro118Leu
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000485512
  gene symbol: MTRF1L
  hgvsc: ENST00000485512.1:n.775C>T
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000464135
  gene symbol: MTRF1L
  hgvsc: ENST00000464135.1:n.775C>T
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000356199
  ensembl transcript: ENST00000367230
  gene symbol: MTRF1L
  hgvsc: ENST00000367230.1:c.692C>T
  hgvsp: ENSP00000356199.1:p.Pro231Leu
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000461949
  gene symbol: MTRF1L
  hgvsc: ENST00000461949.1:n.243C>T
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000356202
  ensembl transcript: ENST00000367233
  gene symbol: MTRF1L
  hgvsc: ENST00000367233.5:c.800C>T
  hgvsp: ENSP00000356202.5:p.Pro267Leu
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000485283
  gene symbol: MTRF1L
  hgvsc: ENST00000485283.1:n.527C>T
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000463251
  gene symbol: MTRF1L
  hgvsc: ENST00000463251.1:n.673C>T
  variant of: http://identifiers.org/hgnc/21051
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 660
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14623
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19490
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7648
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4257
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7725
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 761
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1231
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2290
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Pro267Leu
num of homozygotes: 0
population: Latino
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: DP

6-153314002-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 153314002
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 153314002
    reference: chr 6
allele count: 1
allele frequency: 8.250144377526608e-6
allele num: 121210
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000414383
  ensembl transcript: ENST00000414771
  gene symbol: MTRF1L
  hgvsc: ENST00000414771.1:c.348T>C
  hgvsp: ENST00000414771.1:c.348T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000415113
  ensembl transcript: ENST00000448966
  gene symbol: MTRF1L
  hgvsc: ENST00000448966.1:c.387T>C
  hgvsp: ENST00000448966.1:c.387T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000356202
  ensembl transcript: ENST00000367233
  gene symbol: MTRF1L
  hgvsc: ENST00000367233.5:c.795T>C
  hgvsp: ENST00000367233.5:c.795T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000485512
  gene symbol: MTRF1L
  hgvsc: ENST00000485512.1:n.770T>C
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000461949
  gene symbol: MTRF1L
  hgvsc: ENST00000461949.1:n.238T>C
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000485283
  gene symbol: MTRF1L
  hgvsc: ENST00000485283.1:n.522T>C
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000356200
  ensembl transcript: ENST00000367231
  gene symbol: MTRF1L
  hgvsc: ENST00000367231.5:c.795T>C
  hgvsp: ENST00000367231.5:c.795T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000464135
  gene symbol: MTRF1L
  hgvsc: ENST00000464135.1:n.770T>C
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000463251
  gene symbol: MTRF1L
  hgvsc: ENST00000463251.1:n.668T>C
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000356199
  ensembl transcript: ENST00000367230
  gene symbol: MTRF1L
  hgvsc: ENST00000367230.1:c.687T>C
  hgvsp: ENST00000367230.1:c.687T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/21051
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14622
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 660
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1231
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19504
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4259
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7723
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7669
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2289
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 761
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 3.25e1
  variant carriers: 0
hgvs: p.His265His
num of homozygotes: 0
population: Latino
population: Other
population: South Asian
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: DP

6-153314003-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 153314003
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 153314003
    reference: chr 6
allele count: 7
allele frequency: 5.774815205913411e-5
allele num: 121216
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000485283
  gene symbol: MTRF1L
  hgvsc: ENST00000485283.1:n.521A>G
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000356202
  ensembl transcript: ENST00000367233
  gene symbol: MTRF1L
  hgvsc: ENST00000367233.5:c.794A>G
  hgvsp: ENSP00000356202.5:p.His265Arg
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000356199
  ensembl transcript: ENST00000367230
  gene symbol: MTRF1L
  hgvsc: ENST00000367230.1:c.686A>G
  hgvsp: ENSP00000356199.1:p.His229Arg
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000461949
  gene symbol: MTRF1L
  hgvsc: ENST00000461949.1:n.237A>G
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000356200
  ensembl transcript: ENST00000367231
  gene symbol: MTRF1L
  hgvsc: ENST00000367231.5:c.794A>G
  hgvsp: ENSP00000356200.5:p.His265Arg
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000414383
  ensembl transcript: ENST00000414771
  gene symbol: MTRF1L
  hgvsc: ENST00000414771.1:c.347A>G
  hgvsp: ENSP00000414383.1:p.His116Arg
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000415113
  ensembl transcript: ENST00000448966
  gene symbol: MTRF1L
  hgvsc: ENST00000448966.1:c.386A>G
  hgvsp: ENSP00000415113.1:p.His129Arg
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000464135
  gene symbol: MTRF1L
  hgvsc: ENST00000464135.1:n.769A>G
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000463251
  gene symbol: MTRF1L
  hgvsc: ENST00000463251.1:n.667A>G
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000485512
  gene symbol: MTRF1L
  hgvsc: ENST00000485512.1:n.769A>G
  variant of: http://identifiers.org/hgnc/21051
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14625
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7726
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1230
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19501
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 761
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4259
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7666
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2287
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5234
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
hgvs: p.His265Arg
num of homozygotes: 0
population: Latino
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
population: South Asian
reference allele: T
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff

6-153314008-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 153314008
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 153314008
    reference: chr 6
allele count: 1
allele frequency: 8.24783082049421e-6
allele num: 121244
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000485512
  gene symbol: MTRF1L
  hgvsc: ENST00000485512.1:n.764A>G
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000356202
  ensembl transcript: ENST00000367233
  gene symbol: MTRF1L
  hgvsc: ENST00000367233.5:c.789A>G
  hgvsp: ENSP00000356202.5:p.Ile263Met
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000464135
  gene symbol: MTRF1L
  hgvsc: ENST00000464135.1:n.764A>G
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000415113
  ensembl transcript: ENST00000448966
  gene symbol: MTRF1L
  hgvsc: ENST00000448966.1:c.381A>G
  hgvsp: ENSP00000415113.1:p.Ile127Met
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000356200
  ensembl transcript: ENST00000367231
  gene symbol: MTRF1L
  hgvsc: ENST00000367231.5:c.789A>G
  hgvsp: ENSP00000356200.5:p.Ile263Met
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000485283
  gene symbol: MTRF1L
  hgvsc: ENST00000485283.1:n.516A>G
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000356199
  ensembl transcript: ENST00000367230
  gene symbol: MTRF1L
  hgvsc: ENST00000367230.1:c.681A>G
  hgvsp: ENSP00000356199.1:p.Ile227Met
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000414383
  ensembl transcript: ENST00000414771
  gene symbol: MTRF1L
  hgvsc: ENST00000414771.1:c.342A>G
  hgvsp: ENSP00000414383.1:p.Ile114Met
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000463251
  gene symbol: MTRF1L
  hgvsc: ENST00000463251.1:n.662A>G
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000461949
  gene symbol: MTRF1L
  hgvsc: ENST00000461949.1:n.232A>G
  variant of: http://identifiers.org/hgnc/21051
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19528
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 659
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14627
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7671
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2287
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1230
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4258
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 761
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7724
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ile263Met
num of homozygotes: 0
population: South Asian
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
population: Latino
population: European (Finnish)
reference allele: T
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD

http://identifiers.org/exac.variant/6-153314009-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 153314009
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 153314009
    reference: chr 6
allele count: 2
allele frequency: 1.649620587264929e-5
allele num: 121240
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000461949
  gene symbol: MTRF1L
  hgvsc: ENST00000461949.1:n.231T>G
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000464135
  gene symbol: MTRF1L
  hgvsc: ENST00000464135.1:n.763T>G
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000356199
  ensembl transcript: ENST00000367230
  gene symbol: MTRF1L
  hgvsc: ENST00000367230.1:c.680T>G
  hgvsp: ENSP00000356199.1:p.Ile227Arg
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000356200
  ensembl transcript: ENST00000367231
  gene symbol: MTRF1L
  hgvsc: ENST00000367231.5:c.788T>G
  hgvsp: ENSP00000356200.5:p.Ile263Arg
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000356202
  ensembl transcript: ENST00000367233
  gene symbol: MTRF1L
  hgvsc: ENST00000367233.5:c.788T>G
  hgvsp: ENSP00000356202.5:p.Ile263Arg
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000415113
  ensembl transcript: ENST00000448966
  gene symbol: MTRF1L
  hgvsc: ENST00000448966.1:c.380T>G
  hgvsp: ENSP00000415113.1:p.Ile127Arg
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000414383
  ensembl transcript: ENST00000414771
  gene symbol: MTRF1L
  hgvsc: ENST00000414771.1:c.341T>G
  hgvsp: ENSP00000414383.1:p.Ile114Arg
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000485512
  gene symbol: MTRF1L
  hgvsc: ENST00000485512.1:n.763T>G
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000485283
  gene symbol: MTRF1L
  hgvsc: ENST00000485283.1:n.515T>G
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000463251
  gene symbol: MTRF1L
  hgvsc: ENST00000463251.1:n.661T>G
  variant of: http://identifiers.org/hgnc/21051
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7724
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7671
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 661
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 19528
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4258
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 761
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14628
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2287
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1230
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3355
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Ile263Arg
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
reference allele: A
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff

6-153314009-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 153314009
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 153314009
    reference: chr 6
allele count: 2
allele frequency: 1.649620587264929e-5
allele num: 121240
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000414383
  ensembl transcript: ENST00000414771
  gene symbol: MTRF1L
  hgvsc: ENST00000414771.1:c.341T>C
  hgvsp: ENSP00000414383.1:p.Ile114Thr
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000356200
  ensembl transcript: ENST00000367231
  gene symbol: MTRF1L
  hgvsc: ENST00000367231.5:c.788T>C
  hgvsp: ENSP00000356200.5:p.Ile263Thr
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000485512
  gene symbol: MTRF1L
  hgvsc: ENST00000485512.1:n.763T>C
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000356202
  ensembl transcript: ENST00000367233
  gene symbol: MTRF1L
  hgvsc: ENST00000367233.5:c.788T>C
  hgvsp: ENSP00000356202.5:p.Ile263Thr
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000463251
  gene symbol: MTRF1L
  hgvsc: ENST00000463251.1:n.661T>C
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000464135
  gene symbol: MTRF1L
  hgvsc: ENST00000464135.1:n.763T>C
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000485283
  gene symbol: MTRF1L
  hgvsc: ENST00000485283.1:n.515T>C
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000356199
  ensembl transcript: ENST00000367230
  gene symbol: MTRF1L
  hgvsc: ENST00000367230.1:c.680T>C
  hgvsp: ENSP00000356199.1:p.Ile227Thr
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112031
  ensembl protein: ENSP00000415113
  ensembl transcript: ENST00000448966
  gene symbol: MTRF1L
  hgvsc: ENST00000448966.1:c.380T>C
  hgvsp: ENSP00000415113.1:p.Ile127Thr
  variant of: http://identifiers.org/hgnc/21051
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112031
  ensembl transcript: ENST00000461949
  gene symbol: MTRF1L
  hgvsc: ENST00000461949.1:n.231T>C
  variant of: http://identifiers.org/hgnc/21051
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14628
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19528
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7671
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7724
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1230
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 761
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4258
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Ile263Thr
num of homozygotes: 0
reference allele: A

GenotypeQuality
all individuals: 698
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1257
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1258
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 604
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 119
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 46682
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1732
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 18
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7444
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66422
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10196
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.077549532028686e-5
allele num: 16454
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -2.06e-1

MQ
type: SiteQuality
SIO_000300: 4.288e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.428214e6

VQSLOD
type: SiteQuality
SIO_000300: -2.009e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.19e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.674e0

QD
type: SiteQuality
SIO_000300: 8.289999999999999e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.37e-1

GenotypeQuality
all individuals: 5
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1257
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 46587
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1734
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 27
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7445
bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.080505898090721e-5
allele num: 16446
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10186
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.505706628120577e-5
allele num: 66414
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.64e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.3e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.76e0

QD
type: SiteQuality
SIO_000300: 1.666e1

MQ
type: SiteQuality
SIO_000300: 5.455e1

MQRankSum
type: SiteQuality
SIO_000300: 2.19e0

DP
type: SiteQuality
SIO_000300: 1.426775e6

FS
type: SiteQuality
SIO_000300: 1.4853e1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.56e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

GenotypeQuality
all individuals: 29
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1256
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 734
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 148
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 46493
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 698
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 327
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 147
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7437
bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8614
num of homozygotes: 0

African
type: Population
allele count: 5
allele frequency: 4.911591355599214e-4
allele num: 10180
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.084945843981989e-5
allele num: 16434
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66400
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.97e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.91e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.64e-1

VQSLOD
type: SiteQuality
SIO_000300: -4.442e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.95e-2

QD
type: SiteQuality
SIO_000300: 1.419e1

DP
type: SiteQuality
SIO_000300: 1.426164e6

MQRankSum
type: SiteQuality
SIO_000300: -3.68e-1

MQ
type: SiteQuality
SIO_000300: 4.596e1

GenotypeQuality
all individuals: 92
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1747
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 123
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7269
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 547
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 470
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 153
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 243
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 5.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10098
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8560
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66104
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.11545988258317e-5
allele num: 16352
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.405304e6

MQ
type: SiteQuality
SIO_000300: 4.596e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.04e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.439e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -1.94e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.1e-2

QD
type: SiteQuality
SIO_000300: 1.581e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.95e0

GenotypeQuality
all individuals: 2017
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1229
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 693
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 237
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 327
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 243
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1233
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 713
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 128
bin: 5.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10076
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16322
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8534
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.514600751241973e-5
allele num: 66024
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -2.69e0

MQRankSum
type: SiteQuality
SIO_000300: -7.45e-1

MQ
type: SiteQuality
SIO_000300: 4.079e1

DP
type: SiteQuality
SIO_000300: 1.398395e6

BaseQRankSum
type: SiteQuality
SIO_000300: -4.585e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.06e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.1e0

QD
type: SiteQuality
SIO_000300: 1.803e1

GenotypeQuality
all individuals: 242
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 215
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1227
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 976
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1699
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 695
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1736
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 327
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8492
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11548
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.517865274278255e-5
allele num: 65882
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10000
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16306
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.04e0

VQSLOD
type: SiteQuality
SIO_000300: -2.578e0

MQRankSum
type: SiteQuality
SIO_000300: -1.271e0

DP
type: SiteQuality
SIO_000300: 1.381251e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 4.39e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.58e0

QD
type: SiteQuality
SIO_000300: 1.504e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.37e0

GenotypeQuality
all individuals: 1883
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3432
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 333
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 297
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3461
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 220
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 144
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variant carriers: 0

GenotypeQuality
all individuals: 1351
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 145
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 328
bin: 4.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 684
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9642
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2204
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.327668613913967e-4
allele num: 7532
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 650
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 246
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1366
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.72e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.49e-2

QD
type: SiteQuality
SIO_000300: 1.622e1

VQSLOD
type: SiteQuality
SIO_000300: -7.197e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.03e0

MQRankSum
type: SiteQuality
SIO_000300: 5.55e-1

DP
type: SiteQuality
SIO_000300: 4.57293e5

BaseQRankSum
type: SiteQuality
SIO_000300: 2.14e0

MQ
type: SiteQuality
SIO_000300: 5.811e1

GenotypeQuality
all individuals: 302
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 311
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 225
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 144
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 710
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1324
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 897
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 301
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 5.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 656
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 246
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.324152542372881e-4
allele num: 7552
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 692
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1370
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2222
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9674
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 4.61579e5

MQ
type: SiteQuality
SIO_000300: 5.681e1

VQSLOD
type: SiteQuality
SIO_000300: -1.4e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.05e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.18e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.42e-2

QD
type: SiteQuality
SIO_000300: 1.359e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.56e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.231e0

GenotypeQuality
all individuals: 216
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 188
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 278
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 161
bin: 9.25e1
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GenotypeQuality
all individuals: 181
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variant carriers: 0

GenotypeQuality
all individuals: 2093
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 115
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variant carriers: 0

GenotypeQuality
all individuals: 96
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variant carriers: 0

GenotypeQuality
all individuals: 932
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variant carriers: 0

GenotypeQuality
all individuals: 4957
bin: 6.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 266
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1450
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 780
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2424
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.298701298701299e-4
allele num: 7700
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10544
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 744
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.55e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.504e0

MQRankSum
type: SiteQuality
SIO_000300: 1.57e0

DP
type: SiteQuality
SIO_000300: 5.35571e5

MQ
type: SiteQuality
SIO_000300: 5.722e1

VQSLOD
type: SiteQuality
SIO_000300: -2.242e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.49e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.1e0

QD
type: SiteQuality
SIO_000300: 1.3e1

GenotypeQuality
all individuals: 282
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1831
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1526
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14397
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 164
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 512
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 155
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5379
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1439
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 380
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10904
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 268
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7870
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2516
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 824
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 850
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1492
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.23e0

QD
type: SiteQuality
SIO_000300: 7.4e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.23e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 3.58e-1

DP
type: SiteQuality
SIO_000300: 5.54472e5

VQSLOD
type: SiteQuality
SIO_000300: -1.769e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.231e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.58e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 920
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1769
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 192
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1373
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5517
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 129
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1440
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 163
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 153
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 338
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1516
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2530
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 278
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 862
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7920
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11048
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.98e-1

QD
type: SiteQuality
SIO_000300: 7.99e0

BaseQRankSum
type: SiteQuality
SIO_000300: 9.22e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.15e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 5.59976e5

VQSLOD
type: SiteQuality
SIO_000300: 1.29e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.22e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.495e0

GenotypeQuality
all individuals: 1512
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1488
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23128
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 719
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1590
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1430
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 346
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 124
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16309
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 941
bin: 6.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 286
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.054852320675105e-3
allele num: 948
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 932
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2616
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7996
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1562
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11384
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 6.37e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.05e-2

MQRankSum
type: SiteQuality
SIO_000300: 2.48e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.94e-1

FS
type: SiteQuality
SIO_000300: 6.155e0

DP
type: SiteQuality
SIO_000300: 5.79004e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.27e-1

QD
type: SiteQuality
SIO_000300: 1.264e1

MQ
type: SiteQuality
SIO_000300: 5.895e1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.94e-1

GenotypeQuality
all individuals: 1512
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 471
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1488
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 77
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 390
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1430
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 346
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 148
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 296
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 164
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 286
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 948
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11384
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7996
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1562
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2616
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 932
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.264e1

MQ
type: SiteQuality
SIO_000300: 5.895e1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.94e-1

DP
type: SiteQuality
SIO_000300: 5.79004e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.27e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.48e-1

FS
type: SiteQuality
SIO_000300: 6.155e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.05e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 6.94e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.37e-1

GenotypeQuality
all individuals: 76
bin: 4.25e1
variant carriers: 29

GenotypeQuality
all individuals: 1299
bin: 1.75e1
variant carriers: 266

GenotypeQuality
all individuals: 840
bin: 3.25e1
variant carriers: 362

GenotypeQuality
all individuals: 789
bin: 7.75e1
variant carriers: 455

GenotypeQuality
all individuals: 3810
bin: 2.5e0
variant carriers: 9

GenotypeQuality
all individuals: 68
bin: 5.75e1
variant carriers: 29

GenotypeQuality
all individuals: 66
bin: 4.75e1
variant carriers: 20

GenotypeQuality
all individuals: 716
bin: 2.75e1
variant carriers: 227

GenotypeQuality
all individuals: 289
bin: 8.25e1
variant carriers: 31

GenotypeQuality
all individuals: 5281
bin: 6.25e1
variant carriers: 84

Latino
type: Population
allele count: 445
allele frequency: 2.978580990629183e-1
allele num: 1494
num of homozygotes: 23

European (Finnish)
type: Population
allele count: 285
allele frequency: 1.608352144469526e-1
allele num: 1772
num of homozygotes: 16

South Asian
type: Population
allele count: 1916
allele frequency: 2.121816168327796e-1
allele num: 9030
num of homozygotes: 193

East Asian
type: Population
allele count: 270
allele frequency: 2.191558441558442e-1
allele num: 1232
num of homozygotes: 16

European (Non-Finnish)
type: Population
allele count: 2101
allele frequency: 1.580887885628292e-1
allele num: 13290
num of homozygotes: 97

African
type: Population
allele count: 589
allele frequency: 1.922323759791123e-1
allele num: 3064
num of homozygotes: 42

Other
type: Population
allele count: 45
allele frequency: 1.461038961038961e-1
allele num: 308
num of homozygotes: 2

QD
type: SiteQuality
SIO_000300: 1.923e1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.799999999999999e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.33e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.48e-1

FS
type: SiteQuality
SIO_000300: 1.026e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.22e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.58e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.93e0

MQ
type: SiteQuality
SIO_000300: 5.829e1

DP
type: SiteQuality
SIO_000300: 6.66491e5

GenotypeQuality
all individuals: 1412
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16116
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 15339
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 476
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 101
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 326
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 858
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 199
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 147
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.336898395721925e-3
allele num: 748
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1252
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 224
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 658
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9370
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2000
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.785076758300607e-4
allele num: 5602
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.543e-1

FS
type: SiteQuality
SIO_000300: 1.854e0

VQSLOD
type: SiteQuality
SIO_000300: 8.78e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 4.74912e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 7.2e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.72e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.39e-1

QD
type: SiteQuality
SIO_000300: 1.168e1

GenotypeQuality
all individuals: 259
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 303
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4197
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 16116
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 199
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1246
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 93
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 858
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 476
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 326
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 147
bin: 9.25e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9370
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1252
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 1.5e-3
allele num: 2000
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 658
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 748
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 224
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5602
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 4.74912e5

BaseQRankSum
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.39e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.2e-1

FS
type: SiteQuality
SIO_000300: 1.854e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.543e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.168e1

VQSLOD
type: SiteQuality
SIO_000300: 8.78e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.72e-1

GenotypeQuality
all individuals: 101
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 476
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15339
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4197
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 494
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1412
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 93
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 199
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 147
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 259
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1252
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 658
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 3.570153516601214e-4
allele num: 5602
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 224
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 748
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2000
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9370
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.854e0

VQSLOD
type: SiteQuality
SIO_000300: 8.78e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.2e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.543e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.39e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.168e1

DP
type: SiteQuality
SIO_000300: 4.74912e5

ClippingRankSum
type: SiteQuality
SIO_000300: 5.72e-1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 658
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9370
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 224
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.854e0

DP
type: SiteQuality
SIO_000300: 4.74912e5

MQRankSum
type: SiteQuality
SIO_000300: 7.2e-1

QD
type: SiteQuality
SIO_000300: 1.168e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.543e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.72e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 8.78e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.39e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 1284
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28774
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1571
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 728
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 207
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1349
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 237
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 224
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 207
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1597
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 730
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 485
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2536
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 206
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10182
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4460
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 1.54766817994222e-4
allele num: 19384
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2688
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2880
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9910
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 374
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2482
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.78e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.8e-2

VQSLOD
type: SiteQuality
SIO_000300: 2.17e0

MQ
type: SiteQuality
SIO_000300: 5.465e1

MQRankSum
type: SiteQuality
SIO_000300: -9.370000000000001e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.44e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -4.17e-1

FS
type: SiteQuality
SIO_000300: 3.164e0

DP
type: SiteQuality
SIO_000300: 8.00711e5

QD
type: SiteQuality
SIO_000300: 1.164e1

GenotypeQuality
all individuals: 309
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1366
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1598
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 563
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 244
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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East Asian
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European (Non-Finnish)
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allele frequency: 0.0e0
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Other
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Latino
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allele frequency: 3.004807692307692e-4
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European (Finnish)
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allele frequency: 0.0e0
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MQRankSum
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InbreedingCoeff
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ReadPosRankSum
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BaseQRankSum
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ClippingRankSum
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MQ
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DP
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FS
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VQSLOD
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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Other
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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Latino
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East Asian
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European (Finnish)
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South Asian
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DP
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BaseQRankSum
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FS
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VQSLOD
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InbreedingCoeff
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MQ
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MQRankSum
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QD
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ReadPosRankSum
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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Other
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Latino
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South Asian
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East Asian
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European (Non-Finnish)
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African
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ReadPosRankSum
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MQ
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QD
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DP
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VQSLOD
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InbreedingCoeff
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BaseQRankSum
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MQRankSum
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ClippingRankSum
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FS
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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East Asian
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European (Finnish)
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele num: 23392
num of homozygotes: 0

African
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Latino
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South Asian
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BaseQRankSum
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SIO_000300: 1.06e0

ClippingRankSum
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SIO_000300: -5.49e-1

FS
type: SiteQuality
SIO_000300: 1.236e0

InbreedingCoeff
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DP
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MQ
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VQSLOD
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MQRankSum
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ReadPosRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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Latino
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East Asian
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European (Non-Finnish)
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South Asian
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European (Finnish)
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Other
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FS
type: SiteQuality
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ClippingRankSum
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MQ
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MQRankSum
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BaseQRankSum
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DP
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VQSLOD
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InbreedingCoeff
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ReadPosRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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European (Finnish)
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Latino
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South Asian
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European (Non-Finnish)
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African
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Other
type: Population
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ReadPosRankSum
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VQSLOD
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DP
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QD
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FS
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BaseQRankSum
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InbreedingCoeff
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ClippingRankSum
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MQRankSum
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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European (Non-Finnish)
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European (Finnish)
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Latino
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East Asian
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South Asian
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Other
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ReadPosRankSum
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FS
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InbreedingCoeff
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MQRankSum
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ClippingRankSum
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MQ
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VQSLOD
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DP
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QD
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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East Asian
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South Asian
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European (Finnish)
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Latino
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African
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European (Non-Finnish)
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VQSLOD
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QD
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DP
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ReadPosRankSum
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ClippingRankSum
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FS
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MQ
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MQRankSum
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InbreedingCoeff
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 3.11604138102954e-5
allele num: 32092
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
allele num: 12088
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 3708
num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.0e-2

MQ
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QD
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FS
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VQSLOD
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InbreedingCoeff
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SIO_000300: -6.8e-3

ReadPosRankSum
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DP
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: 8.54e-1

MQRankSum
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SIO_000300: 0.0e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele frequency: 0.0e0
allele num: 7140
num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 572
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 33574
num of homozygotes: 0

South Asian
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allele frequency: 8.122157244964262e-5
allele num: 12312
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East Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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ClippingRankSum
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ReadPosRankSum
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MQRankSum
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MQ
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InbreedingCoeff
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FS
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BaseQRankSum
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VQSLOD
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DP
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 2.844950213371266e-4
allele num: 7030
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 602
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

ClippingRankSum
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SIO_000300: -9.05e-1

BaseQRankSum
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FS
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InbreedingCoeff
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VQSLOD
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ReadPosRankSum
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MQRankSum
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DP
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QD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.681e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 7922
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6218
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 36598
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12772
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7078
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4120
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 602
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.61e-1

VQSLOD
type: SiteQuality
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QD
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ReadPosRankSum
type: SiteQuality
SIO_000300: 5.02e-1

MQRankSum
type: SiteQuality
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DP
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SIO_000300: 1.09163e6

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.03e0

MQ
type: SiteQuality
SIO_000300: 5.397e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.3e-3

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 8564
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 624
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 1
allele frequency: 1.364256480218281e-4
allele num: 7330
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4326
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 39434
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.78e0

FS
type: SiteQuality
SIO_000300: 7.52e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.44e-1

MQ
type: SiteQuality
SIO_000300: 5.622e1

DP
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VQSLOD
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ClippingRankSum
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InbreedingCoeff
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QD
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 1.83e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4378
num of homozygotes: 0

African
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 636
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 2.476964232636481e-5
allele num: 40372
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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Latino
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allele frequency: 1.141813199360585e-4
allele num: 8758
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ReadPosRankSum
type: SiteQuality
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FS
type: SiteQuality
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DP
type: SiteQuality
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BaseQRankSum
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InbreedingCoeff
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QD
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MQRankSum
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VQSLOD
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MQ
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele frequency: 2.194522471910112e-5
allele num: 45568
num of homozygotes: 0

East Asian
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South Asian
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Latino
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African
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European (Finnish)
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Other
type: Population
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ClippingRankSum
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QD
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MQ
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MQRankSum
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FS
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DP
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ReadPosRankSum
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VQSLOD
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InbreedingCoeff
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele num: 9598
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African
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East Asian
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European (Non-Finnish)
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Other
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South Asian
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European (Finnish)
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VQSLOD
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BaseQRankSum
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ClippingRankSum
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FS
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MQRankSum
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ReadPosRankSum
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MQ
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QD
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InbreedingCoeff
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 2.060071690494829e-5
allele num: 48542
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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African
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allele count: 0
allele frequency: 0.0e0
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South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

FS
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ClippingRankSum
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VQSLOD
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DP
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MQ
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QD
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InbreedingCoeff
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BaseQRankSum
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ReadPosRankSum
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SIO_000300: -1.077e0

MQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele frequency: 0.0e0
allele num: 5168
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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Other
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 2.033016182808815e-5
allele num: 49188
num of homozygotes: 0

DP
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MQRankSum
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ClippingRankSum
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MQ
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BaseQRankSum
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FS
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QD
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InbreedingCoeff
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VQSLOD
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele frequency: 0.0e0
allele num: 14480
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 1.003613006824568e-4
allele num: 9964
num of homozygotes: 0

African
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
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num of homozygotes: 0

ClippingRankSum
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SIO_000300: -8.3e-2

MQRankSum
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ReadPosRankSum
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QD
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MQ
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FS
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DP
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VQSLOD
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BaseQRankSum
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele count: 0
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allele num: 716
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 49370
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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African
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allele count: 1
allele frequency: 1.239771881973717e-4
allele num: 8066
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9966
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.270233e6

MQ
type: SiteQuality
SIO_000300: 5.273e1

QD
type: SiteQuality
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BaseQRankSum
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SIO_000300: -8.51e-1

ClippingRankSum
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SIO_000300: -4.0e-1

VQSLOD
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MQRankSum
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SIO_000300: 1.56e-1

FS
type: SiteQuality
SIO_000300: 1.391e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.1e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.44e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 2.01053520447143e-5
allele num: 49738
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5194
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South Asian
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 10004
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African
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allele count: 0
allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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VQSLOD
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BaseQRankSum
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InbreedingCoeff
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ReadPosRankSum
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FS
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QD
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DP
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MQRankSum
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MQ
type: SiteQuality
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
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Other
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East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele num: 49720
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Latino
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South Asian
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allele count: 0
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European (Finnish)
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InbreedingCoeff
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VQSLOD
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MQRankSum
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BaseQRankSum
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QD
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FS
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DP
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MQ
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ClippingRankSum
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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South Asian
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Latino
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European (Finnish)
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African
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East Asian
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European (Non-Finnish)
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VQSLOD
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ClippingRankSum
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ReadPosRankSum
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InbreedingCoeff
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MQRankSum
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BaseQRankSum
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FS
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MQ
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DP
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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num of homozygotes: 0

East Asian
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European (Finnish)
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Latino
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Other
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South Asian
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European (Non-Finnish)
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allele num: 48146
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BaseQRankSum
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VQSLOD
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ClippingRankSum
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MQRankSum
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MQ
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ReadPosRankSum
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QD
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FS
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InbreedingCoeff
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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GenotypeQuality
all individuals: 199
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 473
bin: 1.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4664
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9306
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6970
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13734
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.270250635670178e-5
allele num: 44048
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7194
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 660
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.18e0

FS
type: SiteQuality
SIO_000300: 4.438e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.7e-1

MQ
type: SiteQuality
SIO_000300: 5.561e1

MQRankSum
type: SiteQuality
SIO_000300: 7.24e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.077e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.1e-3

QD
type: SiteQuality
SIO_000300: 1.019e1

DP
type: SiteQuality
SIO_000300: 1.068101e6

ClippingRankSum
type: SiteQuality
SIO_000300: -6.6e-2

GenotypeQuality
all individuals: 24716
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4664
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 660
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 44048
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.2811999417504e-5
allele num: 13734
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7194
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.074575542660649e-4
allele num: 9306
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6970
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.1e-3

QD
type: SiteQuality
SIO_000300: 1.019e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.7e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.077e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.18e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.6e-2

FS
type: SiteQuality
SIO_000300: 4.438e0

MQRankSum
type: SiteQuality
SIO_000300: 7.24e-1

MQ
type: SiteQuality
SIO_000300: 5.561e1

DP
type: SiteQuality
SIO_000300: 1.068101e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9240
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.30246823426318e-5
allele num: 13694
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 662
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7158
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.282062984938384e-5
allele num: 43820
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4616
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6930
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.200000000000001e-3

MQRankSum
type: SiteQuality
SIO_000300: 9.25e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.219e0

MQ
type: SiteQuality
SIO_000300: 5.79e1

DP
type: SiteQuality
SIO_000300: 1.056296e6

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.184e1

VQSLOD
type: SiteQuality
SIO_000300: -1.579e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.85e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.2e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.517666516313337e-5
allele num: 13302
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 634
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6676
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6388
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8914
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 40646
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4402
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.473e0

DP
type: SiteQuality
SIO_000300: 9.60229e5

MQ
type: SiteQuality
SIO_000300: 5.53e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.16e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 4.8e0

MQRankSum
type: SiteQuality
SIO_000300: 1.71e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.61e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.21e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.251e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
all individuals: 537
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.562988433885589e-4
allele num: 6398
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13298
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6692
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 632
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8916
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 40786
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4408
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.53e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.330000000000001e-1

DP
type: SiteQuality
SIO_000300: 9.58909e5

VQSLOD
type: SiteQuality
SIO_000300: -1.634e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.15e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.66e-1

MQ
type: SiteQuality
SIO_000300: 5.79e1

MQRankSum
type: SiteQuality
SIO_000300: -3.11e-1

QD
type: SiteQuality
SIO_000300: 1.137e1

GenotypeQuality
all individuals: 480
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 357
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4320
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13176
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.132502831257078e-4
allele num: 8830
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6218
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6532
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 39514
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.29e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.22e0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -9.65e-1

VQSLOD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.295e1

QD
type: SiteQuality
SIO_000300: 1.084e1

DP
type: SiteQuality
SIO_000300: 9.34276e5

ClippingRankSum
type: SiteQuality
SIO_000300: 1.63e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12658
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8542
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 572
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3988
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 5.274261603375527e-4
allele num: 5688
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6064
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 35980
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.71e-2

VQSLOD
type: SiteQuality
SIO_000300: 5.21e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.01e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 8.76142e5

ClippingRankSum
type: SiteQuality
SIO_000300: 3.18e-1

MQ
type: SiteQuality
SIO_000300: 5.867e1

MQRankSum
type: SiteQuality
SIO_000300: 4.33e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.2e-2

QD
type: SiteQuality
SIO_000300: 1.117e1

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3676
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8240
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5098
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.63265306122449e-4
allele num: 12250
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 544
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African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5714
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 33244
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.181e1

ReadPosRankSum
type: SiteQuality
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MQ
type: SiteQuality
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DP
type: SiteQuality
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MQRankSum
type: SiteQuality
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ClippingRankSum
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InbreedingCoeff
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: -3.96e-1

FS
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: 4.15e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 226
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GenotypeQuality
all individuals: 480
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variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 1.254390366281987e-4
allele num: 7972
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4778
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 31522
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 518
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 3472
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11990
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.833516685001834e-4
allele num: 5454
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.5e0

FS
type: SiteQuality
SIO_000300: 5.398e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.92e-2

MQ
type: SiteQuality
SIO_000300: 5.89e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.37e-1

DP
type: SiteQuality
SIO_000300: 8.33028e5

QD
type: SiteQuality
SIO_000300: 8.609999999999999e0

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.78e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.179999999999999e-1

GenotypeQuality
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bin: 8.25e1
variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 1.75e1
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.75e1
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GenotypeQuality
all individuals: 435
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7972
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3472
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4778
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 518
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5454
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 6.344775077723494e-5
allele num: 31522
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11990
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.89e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.179999999999999e-1

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 5.398e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.37e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.5e0

QD
type: SiteQuality
SIO_000300: 8.609999999999999e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.78e-1

DP
type: SiteQuality
SIO_000300: 8.33028e5

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.92e-2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 3182
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 8.628127696289905e-5
allele num: 11590
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5134
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 28778
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4240
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 492
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7486
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 8.2301e5

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.806e1

MQ
type: SiteQuality
SIO_000300: 5.682e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.358e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.24e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.36e0

VQSLOD
type: SiteQuality
SIO_000300: -9.974e-1

MQRankSum
type: SiteQuality
SIO_000300: 9.83e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.92e0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2533
bin: 9.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4064
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7312
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11498
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 28028
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5046
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3100
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 488
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.377e1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.27e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.27e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.27e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 8.21933e5

MQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.25e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.33e-2

MQ
type: SiteQuality
SIO_000300: 5.903e1

GenotypeQuality
all individuals: 336
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 9163
bin: 9.75e1
variant carriers: 9

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10334
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16216
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11550
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66470
num of homozygotes: 0

East Asian
type: Population
allele count: 9
allele frequency: 1.044568245125348e-3
allele num: 8616
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.030717e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.0e-3

MQRankSum
type: SiteQuality
SIO_000300: -2.83e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.84e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.3e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

MQ
type: SiteQuality
SIO_000300: 5.967e1

QD
type: SiteQuality
SIO_000300: 1.56e1

FS
type: SiteQuality
SIO_000300: 8.65e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.88e-1

GenotypeQuality
all individuals: 578
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 28
bin: 7.5e0
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66466
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.658008658008658e-5
allele num: 11550
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10328
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16232
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.1e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.28e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.12e0

VQSLOD
type: SiteQuality
SIO_000300: 2.34e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.97e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 9.44e0

DP
type: SiteQuality
SIO_000300: 2.032479e6

GenotypeQuality
all individuals: 372
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 230
bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11550
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10336
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66474
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.157635467980295e-5
allele num: 16240
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.68e0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.08e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.808e0

VQSLOD
type: SiteQuality
SIO_000300: -8.110000000000001e-2

QD
type: SiteQuality
SIO_000300: 1.332e1

DP
type: SiteQuality
SIO_000300: 2.035386e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -1.289e0

FS
type: SiteQuality
SIO_000300: 1.328e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11550
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66492
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10342
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 1.843431240014748e-4
allele num: 16274
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.074e1

FS
type: SiteQuality
SIO_000300: 6.519e0

BaseQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: -3.87e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.4e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 2.73e-1

MQ
type: SiteQuality
SIO_000300: 5.967e1

DP
type: SiteQuality
SIO_000300: 2.043387e6

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 46
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variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 4.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11554
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10352
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.128953174797744e-5
allele num: 16316
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66532
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.44e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.81e0

DP
type: SiteQuality
SIO_000300: 2.048231e6

QD
type: SiteQuality
SIO_000300: 1.64e1

MQ
type: SiteQuality
SIO_000300: 5.981e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.11e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.49e0

MQRankSum
type: SiteQuality
SIO_000300: 4.23e-1

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2661
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 27
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66574
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.109481915933529e-5
allele num: 16368
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10362
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.736e0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -3.825e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 3.67e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.43e0

QD
type: SiteQuality
SIO_000300: 9.470000000000001e0

MQRankSum
type: SiteQuality
SIO_000300: -1.119e0

DP
type: SiteQuality
SIO_000300: 2.052508e6

GenotypeQuality
all individuals: 9139
bin: 9.75e1
variant carriers: 10

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3938
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.650519031141868e-5
allele num: 11560
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10370
num of homozygotes: 0

South Asian
type: Population
allele count: 10
allele frequency: 6.090133982947625e-4
allele num: 16420
num of homozygotes: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66614
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.724e0

VQSLOD
type: SiteQuality
SIO_000300: -3.52e-2

DP
type: SiteQuality
SIO_000300: 2.055562e6

MQ
type: SiteQuality
SIO_000300: 5.943e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.01e-2

QD
type: SiteQuality
SIO_000300: 1.23e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.73e-1

FS
type: SiteQuality
SIO_000300: 1.934e0

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 7.53e-1

GenotypeQuality
all individuals: 17
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25622
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1694
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8729
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5227
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3938
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 152
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3345
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10372
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.50105073551486e-5
allele num: 66620
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16438
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.08e0

MQ
type: SiteQuality
SIO_000300: 5.98e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

FS
type: SiteQuality
SIO_000300: 8.110000000000001e-1

QD
type: SiteQuality
SIO_000300: 1.118e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.379e0

VQSLOD
type: SiteQuality
SIO_000300: -1.642e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.28e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.469e0

DP
type: SiteQuality
SIO_000300: 2.055627e6

GenotypeQuality
all individuals: 22
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3347
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5230
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variant carriers: 0

GenotypeQuality
all individuals: 35
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variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3936
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
all individuals: 0
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variant carriers: 0

GenotypeQuality
all individuals: 135
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variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
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variant carriers: 0

GenotypeQuality
all individuals: 17
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variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25701
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1694
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
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variant carriers: 0

GenotypeQuality
all individuals: 8737
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10372
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.080505898090721e-5
allele num: 16446
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66628
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8628
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.76e0

MQ
type: SiteQuality
SIO_000300: 5.966e1

MQRankSum
type: SiteQuality
SIO_000300: 4.14e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.089e-1

QD
type: SiteQuality
SIO_000300: 1.631e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.2e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

FS
type: SiteQuality
SIO_000300: 6.14e0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.66e-1

DP
type: SiteQuality
SIO_000300: 2.05626e6

GenotypeQuality
all individuals: 9129
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 5228
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 128
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2659
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variant carriers: 0

GenotypeQuality
all individuals: 30
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variant carriers: 0

GenotypeQuality
all individuals: 12
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 24
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3347
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 5.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10372
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500690317546071e-5
allele num: 66636
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16454
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.36e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -1.297e0

FS
type: SiteQuality
SIO_000300: 3.993e0

MQRankSum
type: SiteQuality
SIO_000300: 6.24e-1

VQSLOD
type: SiteQuality
SIO_000300: -5.326e-1

MQ
type: SiteQuality
SIO_000300: 5.895e1

QD
type: SiteQuality
SIO_000300: 9.02e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.195e0

DP
type: SiteQuality
SIO_000300: 2.056643e6

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
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variant carriers: 0

GenotypeQuality
all individuals: 16
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variant carriers: 0

GenotypeQuality
all individuals: 11
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9128
bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16470
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10372
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500240038406145e-5
allele num: 66656
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.951e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.6e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.62e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.65e0

QD
type: SiteQuality
SIO_000300: 1.38e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.42e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.76e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

FS
type: SiteQuality
SIO_000300: 4.931e0

DP
type: SiteQuality
SIO_000300: 2.056998e6

GenotypeQuality
all individuals: 2
bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 7

GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1694
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66658
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10372
num of homozygotes: 0

East Asian
type: Population
allele count: 7
allele frequency: 8.11500115928588e-4
allele num: 8626
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16474
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.266e1

FS
type: SiteQuality
SIO_000300: 2.465e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.42e-1

MQ
type: SiteQuality
SIO_000300: 5.884e1

DP
type: SiteQuality
SIO_000300: 2.057441e6

MQRankSum
type: SiteQuality
SIO_000300: 6.81e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.01e-1

VQSLOD
type: SiteQuality
SIO_000300: -9.88e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.61e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

GenotypeQuality
all individuals: 13
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5233
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variant carriers: 0

GenotypeQuality
all individuals: 24
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 12
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variant carriers: 0

GenotypeQuality
all individuals: 1694
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 97
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3354
bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16482
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10378
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499970000599988e-5
allele num: 66668
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8630
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.947e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.423e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.55e0

MQRankSum
type: SiteQuality
SIO_000300: 4.21e-1

QD
type: SiteQuality
SIO_000300: 1.601e1

DP
type: SiteQuality
SIO_000300: 2.05722e6

FS
type: SiteQuality
SIO_000300: 8.202999999999999e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.92e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.1e0

GenotypeQuality
all individuals: 14
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25783
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 97
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8725
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1694
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3938
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9120
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 14
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5231
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2659
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 9.637625289128758e-5
allele num: 10376
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66670
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.646031471554557e-5
allele num: 11566
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16480
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8628
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.561e1

MQRankSum
type: SiteQuality
SIO_000300: -1.89e-1

MQ
type: SiteQuality
SIO_000300: 5.918e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.09e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.61e-1

DP
type: SiteQuality
SIO_000300: 2.057348e6

FS
type: SiteQuality
SIO_000300: 1.1e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.48e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.382e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.74e-2