4-8620186-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8620186
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 8620186
    reference: chr 4
allele count: 5
allele frequency: 4.125276393518366e-5
allele num: 121204
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000155269
  ensembl transcript: ENST00000513120
  gene symbol: GPR78
  hgvsc: ENST00000513120.1:n.3151G>A
  variant of: http://identifiers.org/hgnc/4528
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000422693
  ensembl transcript: ENST00000515606
  gene symbol: CPZ
  hgvsc: ENST00000515606.1:c.*1587G>A
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000109625
  ensembl transcript: ENST00000513486
  gene symbol: CPZ
  hgvsc: ENST00000513486.1:n.368G>A
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000155269
  ensembl protein: ENSP00000424326
  ensembl transcript: ENST00000514302
  gene symbol: GPR78
  hgvsc: ENST00000514302.1:c.*1549G>A
  variant of: http://identifiers.org/hgnc/4528
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000315074
  ensembl transcript: ENST00000315782
  gene symbol: CPZ
  hgvsc: ENST00000315782.6:c.1501G>A
  hgvsp: ENSP00000315074.6:p.Asp501Asn
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000354255
  ensembl transcript: ENST00000360986
  gene symbol: CPZ
  hgvsc: ENST00000360986.4:c.1534G>A
  hgvsp: ENSP00000354255.4:p.Asp512Asn
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000403981
  ensembl transcript: ENST00000429646
  gene symbol: CPZ
  hgvsc: ENST00000429646.2:c.358G>A
  hgvsp: ENSP00000403981.2:p.Asp120Asn
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000371920
  ensembl transcript: ENST00000382480
  gene symbol: CPZ
  hgvsc: ENST00000382480.2:c.1123G>A
  hgvsp: ENSP00000371920.2:p.Asp375Asn
  variant of: http://identifiers.org/hgnc/2333
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17859
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1873
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27969
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9473
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 770
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2067
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9238
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 415
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Asp512Asn
num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: G
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum

4-8620192-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8620192
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 8620192
    reference: chr 4
allele count: 2
allele frequency: 1.650437365901964e-5
allele num: 121180
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000403981
  ensembl transcript: ENST00000429646
  gene symbol: CPZ
  hgvsc: ENST00000429646.2:c.364T>C
  hgvsp: ENSP00000403981.2:p.Phe122Leu
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000371920
  ensembl transcript: ENST00000382480
  gene symbol: CPZ
  hgvsc: ENST00000382480.2:c.1129T>C
  hgvsp: ENSP00000371920.2:p.Phe377Leu
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000422693
  ensembl transcript: ENST00000515606
  gene symbol: CPZ
  hgvsc: ENST00000515606.1:c.*1593T>C
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000155269
  ensembl protein: ENSP00000424326
  ensembl transcript: ENST00000514302
  gene symbol: GPR78
  hgvsc: ENST00000514302.1:c.*1555T>C
  variant of: http://identifiers.org/hgnc/4528
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000354255
  ensembl transcript: ENST00000360986
  gene symbol: CPZ
  hgvsc: ENST00000360986.4:c.1540T>C
  hgvsp: ENSP00000354255.4:p.Phe514Leu
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000109625
  ensembl transcript: ENST00000513486
  gene symbol: CPZ
  hgvsc: ENST00000513486.1:n.374T>C
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000315074
  ensembl transcript: ENST00000315782
  gene symbol: CPZ
  hgvsc: ENST00000315782.6:c.1507T>C
  hgvsp: ENSP00000315074.6:p.Phe503Leu
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000155269
  ensembl transcript: ENST00000513120
  gene symbol: GPR78
  hgvsc: ENST00000513120.1:n.3157T>C
  variant of: http://identifiers.org/hgnc/4528
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17874
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 771
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1872
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27970
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9447
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 343
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2060
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2222
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9231
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Phe514Leu
num of homozygotes: 0
population: East Asian
population: Other
population: South Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
reference allele: T
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: ClippingRankSum

4-8620192-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8620192
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 8620192
    reference: chr 4
allele count: 1
allele frequency: 8.25218682950982e-6
allele num: 121180
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000403981
  ensembl transcript: ENST00000429646
  gene symbol: CPZ
  hgvsc: ENST00000429646.2:c.364T>G
  hgvsp: ENSP00000403981.2:p.Phe122Val
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000422693
  ensembl transcript: ENST00000515606
  gene symbol: CPZ
  hgvsc: ENST00000515606.1:c.*1593T>G
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000155269
  ensembl protein: ENSP00000424326
  ensembl transcript: ENST00000514302
  gene symbol: GPR78
  hgvsc: ENST00000514302.1:c.*1555T>G
  variant of: http://identifiers.org/hgnc/4528
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000354255
  ensembl transcript: ENST00000360986
  gene symbol: CPZ
  hgvsc: ENST00000360986.4:c.1540T>G
  hgvsp: ENSP00000354255.4:p.Phe514Val
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000371920
  ensembl transcript: ENST00000382480
  gene symbol: CPZ
  hgvsc: ENST00000382480.2:c.1129T>G
  hgvsp: ENSP00000371920.2:p.Phe377Val
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000315074
  ensembl transcript: ENST00000315782
  gene symbol: CPZ
  hgvsc: ENST00000315782.6:c.1507T>G
  hgvsp: ENSP00000315074.6:p.Phe503Val
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000155269
  ensembl transcript: ENST00000513120
  gene symbol: GPR78
  hgvsc: ENST00000513120.1:n.3157T>G
  variant of: http://identifiers.org/hgnc/4528
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000109625
  ensembl transcript: ENST00000513486
  gene symbol: CPZ
  hgvsc: ENST00000513486.1:n.374T>G
  variant of: http://identifiers.org/hgnc/2333
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27970
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17874
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9447
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 771
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1872
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 343
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 928
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2225
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2222
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Phe514Val
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: Other
population: European (Finnish)
population: African
population: East Asian
population: South Asian
reference allele: T
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP

4-8620193-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8620193
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 8620193
    reference: chr 4
allele count: 1
allele frequency: 8.252595441266279e-6
allele num: 121174
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000155269
  ensembl transcript: ENST00000513120
  gene symbol: GPR78
  hgvsc: ENST00000513120.1:n.3158T>G
  variant of: http://identifiers.org/hgnc/4528
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000315074
  ensembl transcript: ENST00000315782
  gene symbol: CPZ
  hgvsc: ENST00000315782.6:c.1508T>G
  hgvsp: ENSP00000315074.6:p.Phe503Cys
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000354255
  ensembl transcript: ENST00000360986
  gene symbol: CPZ
  hgvsc: ENST00000360986.4:c.1541T>G
  hgvsp: ENSP00000354255.4:p.Phe514Cys
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000109625
  ensembl transcript: ENST00000513486
  gene symbol: CPZ
  hgvsc: ENST00000513486.1:n.375T>G
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000403981
  ensembl transcript: ENST00000429646
  gene symbol: CPZ
  hgvsc: ENST00000429646.2:c.365T>G
  hgvsp: ENSP00000403981.2:p.Phe122Cys
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000422693
  ensembl transcript: ENST00000515606
  gene symbol: CPZ
  hgvsc: ENST00000515606.1:c.*1594T>G
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000371920
  ensembl transcript: ENST00000382480
  gene symbol: CPZ
  hgvsc: ENST00000382480.2:c.1130T>G
  hgvsp: ENSP00000371920.2:p.Phe377Cys
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000155269
  ensembl protein: ENSP00000424326
  ensembl transcript: ENST00000514302
  gene symbol: GPR78
  hgvsc: ENST00000514302.1:c.*1556T>G
  variant of: http://identifiers.org/hgnc/4528
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9454
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1874
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17852
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27976
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 771
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2059
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 928
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42518
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Phe514Cys
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: African
population: South Asian
population: European (Finnish)
reference allele: T
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: BaseQRankSum

4-8620194-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8620194
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 8620194
    reference: chr 4
allele count: 13
allele frequency: 1.072925951602786e-4
allele num: 121164
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000155269
  ensembl protein: ENSP00000424326
  ensembl transcript: ENST00000514302
  gene symbol: GPR78
  hgvsc: ENST00000514302.1:c.*1557C>T
  variant of: http://identifiers.org/hgnc/4528
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000422693
  ensembl transcript: ENST00000515606
  gene symbol: CPZ
  hgvsc: ENST00000515606.1:c.*1595C>T
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000155269
  ensembl transcript: ENST00000513120
  gene symbol: GPR78
  hgvsc: ENST00000513120.1:n.3159C>T
  variant of: http://identifiers.org/hgnc/4528
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000354255
  ensembl transcript: ENST00000360986
  gene symbol: CPZ
  hgvsc: ENST00000360986.4:c.1542C>T
  hgvsp: ENST00000360986.4:c.1542C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000403981
  ensembl transcript: ENST00000429646
  gene symbol: CPZ
  hgvsc: ENST00000429646.2:c.366C>T
  hgvsp: ENST00000429646.2:c.366C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000315074
  ensembl transcript: ENST00000315782
  gene symbol: CPZ
  hgvsc: ENST00000315782.6:c.1509C>T
  hgvsp: ENST00000315782.6:c.1509C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000109625
  ensembl transcript: ENST00000513486
  gene symbol: CPZ
  hgvsc: ENST00000513486.1:n.376C>T
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000371920
  ensembl transcript: ENST00000382480
  gene symbol: CPZ
  hgvsc: ENST00000382480.2:c.1131C>T
  hgvsp: ENST00000382480.2:c.1131C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2333
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17832
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27967
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1877
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9466
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 773
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 342
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Phe514Phe
num of homozygotes: 0
population: Latino
population: African
population: Other
population: East Asian
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum

4-8620195-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8620195
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 8620195
    reference: chr 4
allele count: 14
allele frequency: 1.15532522405057e-4
allele num: 121178
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000354255
  ensembl transcript: ENST00000360986
  gene symbol: CPZ
  hgvsc: ENST00000360986.4:c.1543G>A
  hgvsp: ENSP00000354255.4:p.Gly515Ser
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000403981
  ensembl transcript: ENST00000429646
  gene symbol: CPZ
  hgvsc: ENST00000429646.2:c.367G>A
  hgvsp: ENSP00000403981.2:p.Gly123Ser
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000315074
  ensembl transcript: ENST00000315782
  gene symbol: CPZ
  hgvsc: ENST00000315782.6:c.1510G>A
  hgvsp: ENSP00000315074.6:p.Gly504Ser
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000422693
  ensembl transcript: ENST00000515606
  gene symbol: CPZ
  hgvsc: ENST00000515606.1:c.*1596G>A
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000109625
  ensembl transcript: ENST00000513486
  gene symbol: CPZ
  hgvsc: ENST00000513486.1:n.377G>A
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000155269
  ensembl transcript: ENST00000513120
  gene symbol: GPR78
  hgvsc: ENST00000513120.1:n.3160G>A
  variant of: http://identifiers.org/hgnc/4528
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000371920
  ensembl transcript: ENST00000382480
  gene symbol: CPZ
  hgvsc: ENST00000382480.2:c.1132G>A
  hgvsp: ENSP00000371920.2:p.Gly378Ser
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000155269
  ensembl protein: ENSP00000424326
  ensembl transcript: ENST00000514302
  gene symbol: GPR78
  hgvsc: ENST00000514302.1:c.*1558G>A
  variant of: http://identifiers.org/hgnc/4528
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1868
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 9474
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17828
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27982
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 772
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42552
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2065
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Gly515Ser
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: G
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: QD

4-8620195-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8620195
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 8620195
    reference: chr 4
allele count: 1
allele frequency: 8.252323028932645e-6
allele num: 121178
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000155269
  ensembl protein: ENSP00000424326
  ensembl transcript: ENST00000514302
  gene symbol: GPR78
  hgvsc: ENST00000514302.1:c.*1558G>C
  variant of: http://identifiers.org/hgnc/4528
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000315074
  ensembl transcript: ENST00000315782
  gene symbol: CPZ
  hgvsc: ENST00000315782.6:c.1510G>C
  hgvsp: ENSP00000315074.6:p.Gly504Arg
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000109625
  ensembl transcript: ENST00000513486
  gene symbol: CPZ
  hgvsc: ENST00000513486.1:n.377G>C
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000371920
  ensembl transcript: ENST00000382480
  gene symbol: CPZ
  hgvsc: ENST00000382480.2:c.1132G>C
  hgvsp: ENSP00000371920.2:p.Gly378Arg
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000403981
  ensembl transcript: ENST00000429646
  gene symbol: CPZ
  hgvsc: ENST00000429646.2:c.367G>C
  hgvsp: ENSP00000403981.2:p.Gly123Arg
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000155269
  ensembl transcript: ENST00000513120
  gene symbol: GPR78
  hgvsc: ENST00000513120.1:n.3160G>C
  variant of: http://identifiers.org/hgnc/4528
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000354255
  ensembl transcript: ENST00000360986
  gene symbol: CPZ
  hgvsc: ENST00000360986.4:c.1543G>C
  hgvsp: ENSP00000354255.4:p.Gly515Arg
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000422693
  ensembl transcript: ENST00000515606
  gene symbol: CPZ
  hgvsc: ENST00000515606.1:c.*1596G>C
  variant of: http://identifiers.org/hgnc/2333
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9474
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27982
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 772
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17828
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1868
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 215
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 409
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Gly515Arg
num of homozygotes: 0
population: South Asian
population: Latino
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: MQ

4-8620195-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8620195
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 8620195
    reference: chr 4
allele count: 1
allele frequency: 8.252323028932645e-6
allele num: 121178
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000109625
  ensembl transcript: ENST00000513486
  gene symbol: CPZ
  hgvsc: ENST00000513486.1:n.377G>T
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000354255
  ensembl transcript: ENST00000360986
  gene symbol: CPZ
  hgvsc: ENST00000360986.4:c.1543G>T
  hgvsp: ENSP00000354255.4:p.Gly515Cys
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000422693
  ensembl transcript: ENST00000515606
  gene symbol: CPZ
  hgvsc: ENST00000515606.1:c.*1596G>T
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000403981
  ensembl transcript: ENST00000429646
  gene symbol: CPZ
  hgvsc: ENST00000429646.2:c.367G>T
  hgvsp: ENSP00000403981.2:p.Gly123Cys
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000155269
  ensembl protein: ENSP00000424326
  ensembl transcript: ENST00000514302
  gene symbol: GPR78
  hgvsc: ENST00000514302.1:c.*1558G>T
  variant of: http://identifiers.org/hgnc/4528
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000371920
  ensembl transcript: ENST00000382480
  gene symbol: CPZ
  hgvsc: ENST00000382480.2:c.1132G>T
  hgvsp: ENSP00000371920.2:p.Gly378Cys
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000155269
  ensembl transcript: ENST00000513120
  gene symbol: GPR78
  hgvsc: ENST00000513120.1:n.3160G>T
  variant of: http://identifiers.org/hgnc/4528
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000315074
  ensembl transcript: ENST00000315782
  gene symbol: CPZ
  hgvsc: ENST00000315782.6:c.1510G>T
  hgvsp: ENSP00000315074.6:p.Gly504Cys
  variant of: http://identifiers.org/hgnc/2333
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 27982
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17828
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1868
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9474
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 772
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42552
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 341
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Gly515Cys
num of homozygotes: 0
population: South Asian
population: East Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: African
reference allele: G
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: MQ

4-8620196-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8620196
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 8620196
    reference: chr 4
allele count: 5
allele frequency: 4.126433935792688e-5
allele num: 121170
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000315074
  ensembl transcript: ENST00000315782
  gene symbol: CPZ
  hgvsc: ENST00000315782.6:c.1511G>A
  hgvsp: ENSP00000315074.6:p.Gly504Asp
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000422693
  ensembl transcript: ENST00000515606
  gene symbol: CPZ
  hgvsc: ENST00000515606.1:c.*1597G>A
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000354255
  ensembl transcript: ENST00000360986
  gene symbol: CPZ
  hgvsc: ENST00000360986.4:c.1544G>A
  hgvsp: ENSP00000354255.4:p.Gly515Asp
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000109625
  ensembl transcript: ENST00000513486
  gene symbol: CPZ
  hgvsc: ENST00000513486.1:n.378G>A
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000371920
  ensembl transcript: ENST00000382480
  gene symbol: CPZ
  hgvsc: ENST00000382480.2:c.1133G>A
  hgvsp: ENSP00000371920.2:p.Gly378Asp
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000155269
  ensembl protein: ENSP00000424326
  ensembl transcript: ENST00000514302
  gene symbol: GPR78
  hgvsc: ENST00000514302.1:c.*1559G>A
  variant of: http://identifiers.org/hgnc/4528
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000155269
  ensembl transcript: ENST00000513120
  gene symbol: GPR78
  hgvsc: ENST00000513120.1:n.3161G>A
  variant of: http://identifiers.org/hgnc/4528
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000403981
  ensembl transcript: ENST00000429646
  gene symbol: CPZ
  hgvsc: ENST00000429646.2:c.368G>A
  hgvsp: ENSP00000403981.2:p.Gly123Asp
  variant of: http://identifiers.org/hgnc/2333
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 777
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9470
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27996
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17815
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1873
  bin: 3.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 339
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 924
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 217
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Gly515Asp
num of homozygotes: 1
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD

http://identifiers.org/exac.variant/4-8620197-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8620197
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 8620197
    reference: chr 4
allele count: 9
allele frequency: 7.45848112175556e-5
allele num: 120668
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000109625
  ensembl transcript: ENST00000513486
  gene symbol: CPZ
  hgvsc: ENST00000513486.1:n.379C>A
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000422693
  ensembl transcript: ENST00000515606
  gene symbol: CPZ
  hgvsc: ENST00000515606.1:c.*1598C>A
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000155269
  ensembl protein: ENSP00000424326
  ensembl transcript: ENST00000514302
  gene symbol: GPR78
  hgvsc: ENST00000514302.1:c.*1560C>A
  variant of: http://identifiers.org/hgnc/4528
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000371920
  ensembl transcript: ENST00000382480
  gene symbol: CPZ
  hgvsc: ENST00000382480.2:c.1134C>A
  hgvsp: ENST00000382480.2:c.1134C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000315074
  ensembl transcript: ENST00000315782
  gene symbol: CPZ
  hgvsc: ENST00000315782.6:c.1512C>A
  hgvsp: ENST00000315782.6:c.1512C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000354255
  ensembl transcript: ENST00000360986
  gene symbol: CPZ
  hgvsc: ENST00000360986.4:c.1545C>A
  hgvsp: ENST00000360986.4:c.1545C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000155269
  ensembl transcript: ENST00000513120
  gene symbol: GPR78
  hgvsc: ENST00000513120.1:n.3162C>A
  variant of: http://identifiers.org/hgnc/4528
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000403981
  ensembl transcript: ENST00000429646
  gene symbol: CPZ
  hgvsc: ENST00000429646.2:c.369C>A
  hgvsp: ENST00000429646.2:c.369C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2333
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.90to99.95
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17700
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1915
  bin: 3.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9453
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 509
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 808
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27944
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 226
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 370
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9076
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 171
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 244
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 1.75e1
  variant carriers: 2
hgvs: p.Gly515Gly
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: MQ

4-8620197-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8620197
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 8620197
    reference: chr 4
allele count: 1
allele frequency: 8.287201246395068e-6
allele num: 120668
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000403981
  ensembl transcript: ENST00000429646
  gene symbol: CPZ
  hgvsc: ENST00000429646.2:c.369C>G
  hgvsp: ENST00000429646.2:c.369C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000371920
  ensembl transcript: ENST00000382480
  gene symbol: CPZ
  hgvsc: ENST00000382480.2:c.1134C>G
  hgvsp: ENST00000382480.2:c.1134C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000155269
  ensembl transcript: ENST00000513120
  gene symbol: GPR78
  hgvsc: ENST00000513120.1:n.3162C>G
  variant of: http://identifiers.org/hgnc/4528
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000315074
  ensembl transcript: ENST00000315782
  gene symbol: CPZ
  hgvsc: ENST00000315782.6:c.1512C>G
  hgvsp: ENST00000315782.6:c.1512C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000155269
  ensembl protein: ENSP00000424326
  ensembl transcript: ENST00000514302
  gene symbol: GPR78
  hgvsc: ENST00000514302.1:c.*1560C>G
  variant of: http://identifiers.org/hgnc/4528
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000109625
  ensembl transcript: ENST00000513486
  gene symbol: CPZ
  hgvsc: ENST00000513486.1:n.379C>G
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000422693
  ensembl transcript: ENST00000515606
  gene symbol: CPZ
  hgvsc: ENST00000515606.1:c.*1598C>G
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000354255
  ensembl transcript: ENST00000360986
  gene symbol: CPZ
  hgvsc: ENST00000360986.4:c.1545C>G
  hgvsp: ENST00000360986.4:c.1545C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/2333
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.90to99.95
genotype depth: GenotypeDepth
  all individuals: 9453
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 808
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1915
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27944
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 509
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17700
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 134
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42221
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 171
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2090
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 146
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Gly515Gly
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Other
population: East Asian
reference allele: C
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: MQRankSum

http://identifiers.org/exac.variant/4-8620201-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8620201
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 8620201
    reference: chr 4
allele count: 10
allele frequency: 8.253140319891719e-5
allele num: 121166
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000403981
  ensembl transcript: ENST00000429646
  gene symbol: CPZ
  hgvsc: ENST00000429646.2:c.373C>A
  hgvsp: ENSP00000403981.2:p.Pro125Thr
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000371920
  ensembl transcript: ENST00000382480
  gene symbol: CPZ
  hgvsc: ENST00000382480.2:c.1138C>A
  hgvsp: ENSP00000371920.2:p.Pro380Thr
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000315074
  ensembl transcript: ENST00000315782
  gene symbol: CPZ
  hgvsc: ENST00000315782.6:c.1516C>A
  hgvsp: ENSP00000315074.6:p.Pro506Thr
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000422693
  ensembl transcript: ENST00000515606
  gene symbol: CPZ
  hgvsc: ENST00000515606.1:c.*1602C>A
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000354255
  ensembl transcript: ENST00000360986
  gene symbol: CPZ
  hgvsc: ENST00000360986.4:c.1549C>A
  hgvsp: ENSP00000354255.4:p.Pro517Thr
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000109625
  ensembl transcript: ENST00000513486
  gene symbol: CPZ
  hgvsc: ENST00000513486.1:n.383C>A
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000155269
  ensembl protein: ENSP00000424326
  ensembl transcript: ENST00000514302
  gene symbol: GPR78
  hgvsc: ENST00000514302.1:c.*1564C>A
  variant of: http://identifiers.org/hgnc/4528
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000155269
  ensembl transcript: ENST00000513120
  gene symbol: GPR78
  hgvsc: ENST00000513120.1:n.3166C>A
  variant of: http://identifiers.org/hgnc/4528
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 9480
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28322
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 701
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17773
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1780
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2102
  bin: 9.75e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 370
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2014
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Pro517Thr
num of homozygotes: 0
population: South Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: DP

4-8620201-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8620201
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 8620201
    reference: chr 4
allele count: 1
allele frequency: 8.253140319891718e-6
allele num: 121166
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000371920
  ensembl transcript: ENST00000382480
  gene symbol: CPZ
  hgvsc: ENST00000382480.2:c.1138C>G
  hgvsp: ENSP00000371920.2:p.Pro380Ala
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000315074
  ensembl transcript: ENST00000315782
  gene symbol: CPZ
  hgvsc: ENST00000315782.6:c.1516C>G
  hgvsp: ENSP00000315074.6:p.Pro506Ala
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000109625
  ensembl transcript: ENST00000513486
  gene symbol: CPZ
  hgvsc: ENST00000513486.1:n.383C>G
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000155269
  ensembl transcript: ENST00000513120
  gene symbol: GPR78
  hgvsc: ENST00000513120.1:n.3166C>G
  variant of: http://identifiers.org/hgnc/4528
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000155269
  ensembl protein: ENSP00000424326
  ensembl transcript: ENST00000514302
  gene symbol: GPR78
  hgvsc: ENST00000514302.1:c.*1564C>G
  variant of: http://identifiers.org/hgnc/4528
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000422693
  ensembl transcript: ENST00000515606
  gene symbol: CPZ
  hgvsc: ENST00000515606.1:c.*1602C>G
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000403981
  ensembl transcript: ENST00000429646
  gene symbol: CPZ
  hgvsc: ENST00000429646.2:c.373C>G
  hgvsp: ENSP00000403981.2:p.Pro125Ala
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000354255
  ensembl transcript: ENST00000360986
  gene symbol: CPZ
  hgvsc: ENST00000360986.4:c.1549C>G
  hgvsp: ENSP00000354255.4:p.Pro517Ala
  variant of: http://identifiers.org/hgnc/2333
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 701
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1780
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9480
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17773
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28322
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 309
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2179
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 869
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Pro517Ala
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Finnish)
population: Other
population: African
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum

4-8620201-CCAGT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8620201
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 8620197
    reference: chr 4
allele count: 1
allele frequency: 8.253140319891718e-6
allele num: 121166
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000315074
  ensembl transcript: ENST00000315782
  gene symbol: CPZ
  hgvsc: ENST00000315782.6:c.1519_1522delGTCA
  hgvsp: ENSP00000315074.6:p.Val507LysfsTer53
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000422693
  ensembl transcript: ENST00000515606
  gene symbol: CPZ
  hgvsc: ENST00000515606.1:c.*1605_*1608delGTCA
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000109625
  ensembl transcript: ENST00000513486
  gene symbol: CPZ
  hgvsc: ENST00000513486.1:n.386_389delGTCA
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000371920
  ensembl transcript: ENST00000382480
  gene symbol: CPZ
  hgvsc: ENST00000382480.2:c.1141_1144delGTCA
  hgvsp: ENSP00000371920.2:p.Val381LysfsTer53
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000403981
  ensembl transcript: ENST00000429646
  gene symbol: CPZ
  hgvsc: ENST00000429646.2:c.376_379delGTCA
  hgvsp: ENSP00000403981.2:p.Val126LysfsTer53
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000354255
  ensembl transcript: ENST00000360986
  gene symbol: CPZ
  hgvsc: ENST00000360986.4:c.1552_1555delGTCA
  hgvsp: ENSP00000354255.4:p.Val518LysfsTer53
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000155269
  ensembl protein: ENSP00000424326
  ensembl transcript: ENST00000514302
  gene symbol: GPR78
  hgvsc: ENST00000514302.1:c.*1567_*1570delGTCA
  variant of: http://identifiers.org/hgnc/4528
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000155269
  ensembl transcript: ENST00000513120
  gene symbol: GPR78
  hgvsc: ENST00000513120.1:n.3169_3172delGTCA
  variant of: http://identifiers.org/hgnc/4528
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28322
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17773
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1780
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9480
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 701
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 309
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2102
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 869
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9240
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Val518LysfsTer53
num of homozygotes: 0
population: Other
population: European (Finnish)
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
population: Latino
reference allele: CCAGT
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: QD

4-8620204-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8620204
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 8620204
    reference: chr 4
allele count: 3
allele frequency: 2.476555276713776e-5
allele num: 121136
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000315074
  ensembl transcript: ENST00000315782
  gene symbol: CPZ
  hgvsc: ENST00000315782.6:c.1519G>C
  hgvsp: ENSP00000315074.6:p.Val507Leu
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000109625
  ensembl transcript: ENST00000513486
  gene symbol: CPZ
  hgvsc: ENST00000513486.1:n.386G>C
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000155269
  ensembl transcript: ENST00000513120
  gene symbol: GPR78
  hgvsc: ENST00000513120.1:n.3169G>C
  variant of: http://identifiers.org/hgnc/4528
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000155269
  ensembl protein: ENSP00000424326
  ensembl transcript: ENST00000514302
  gene symbol: GPR78
  hgvsc: ENST00000514302.1:c.*1567G>C
  variant of: http://identifiers.org/hgnc/4528
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000403981
  ensembl transcript: ENST00000429646
  gene symbol: CPZ
  hgvsc: ENST00000429646.2:c.376G>C
  hgvsp: ENSP00000403981.2:p.Val126Leu
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000354255
  ensembl transcript: ENST00000360986
  gene symbol: CPZ
  hgvsc: ENST00000360986.4:c.1552G>C
  hgvsp: ENSP00000354255.4:p.Val518Leu
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000371920
  ensembl transcript: ENST00000382480
  gene symbol: CPZ
  hgvsc: ENST00000382480.2:c.1141G>C
  hgvsp: ENSP00000371920.2:p.Val381Leu
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000422693
  ensembl transcript: ENST00000515606
  gene symbol: CPZ
  hgvsc: ENST00000515606.1:c.*1605G>C
  variant of: http://identifiers.org/hgnc/2333
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 702
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28321
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17742
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1780
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9480
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 369
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43125
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2019
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Val518Leu
num of homozygotes: 0
population: Other
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: DP

4-8620206-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8620206
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 8620206
    reference: chr 4
allele count: 1
allele frequency: 8.256683785524381e-6
allele num: 121114
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000403981
  ensembl transcript: ENST00000429646
  gene symbol: CPZ
  hgvsc: ENST00000429646.2:c.378C>G
  hgvsp: ENST00000429646.2:c.378C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000155269
  ensembl transcript: ENST00000513120
  gene symbol: GPR78
  hgvsc: ENST00000513120.1:n.3171C>G
  variant of: http://identifiers.org/hgnc/4528
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000315074
  ensembl transcript: ENST00000315782
  gene symbol: CPZ
  hgvsc: ENST00000315782.6:c.1521C>G
  hgvsp: ENST00000315782.6:c.1521C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000109625
  ensembl transcript: ENST00000513486
  gene symbol: CPZ
  hgvsc: ENST00000513486.1:n.388C>G
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000354255
  ensembl transcript: ENST00000360986
  gene symbol: CPZ
  hgvsc: ENST00000360986.4:c.1554C>G
  hgvsp: ENST00000360986.4:c.1554C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000422693
  ensembl transcript: ENST00000515606
  gene symbol: CPZ
  hgvsc: ENST00000515606.1:c.*1607C>G
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000371920
  ensembl transcript: ENST00000382480
  gene symbol: CPZ
  hgvsc: ENST00000382480.2:c.1143C>G
  hgvsp: ENST00000382480.2:c.1143C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000155269
  ensembl protein: ENSP00000424326
  ensembl transcript: ENST00000514302
  gene symbol: GPR78
  hgvsc: ENST00000514302.1:c.*1569C>G
  variant of: http://identifiers.org/hgnc/4528
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 704
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1778
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9473
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28327
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17694
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43040
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 369
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 277
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 865
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Val518Val
num of homozygotes: 0
population: Other
population: African
population: East Asian
population: European (Finnish)
population: South Asian
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD

4-8620212-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8620212
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 8620212
    reference: chr 4
allele count: 4
allele frequency: 3.304146704113662e-5
allele num: 121060
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000354255
  ensembl transcript: ENST00000360986
  gene symbol: CPZ
  hgvsc: ENST00000360986.4:c.1560C>T
  hgvsp: ENST00000360986.4:c.1560C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000315074
  ensembl transcript: ENST00000315782
  gene symbol: CPZ
  hgvsc: ENST00000315782.6:c.1527C>T
  hgvsp: ENST00000315782.6:c.1527C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000155269
  ensembl protein: ENSP00000424326
  ensembl transcript: ENST00000514302
  gene symbol: GPR78
  hgvsc: ENST00000514302.1:c.*1575C>T
  variant of: http://identifiers.org/hgnc/4528
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000155269
  ensembl transcript: ENST00000513120
  gene symbol: GPR78
  hgvsc: ENST00000513120.1:n.3177C>T
  variant of: http://identifiers.org/hgnc/4528
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000422693
  ensembl transcript: ENST00000515606
  gene symbol: CPZ
  hgvsc: ENST00000515606.1:c.*1613C>T
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000371920
  ensembl transcript: ENST00000382480
  gene symbol: CPZ
  hgvsc: ENST00000382480.2:c.1149C>T
  hgvsp: ENST00000382480.2:c.1149C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000403981
  ensembl transcript: ENST00000429646
  gene symbol: CPZ
  hgvsc: ENST00000429646.2:c.384C>T
  hgvsp: ENST00000429646.2:c.384C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000109625
  ensembl transcript: ENST00000513486
  gene symbol: CPZ
  hgvsc: ENST00000513486.1:n.394C>T
  variant of: http://identifiers.org/hgnc/2333
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1774
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9463
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 701
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28304
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17629
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2091
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 857
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 339
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2013
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 305
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Asn520Asn
num of homozygotes: 0
population: Other
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
reference allele: C
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum

4-8620213-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8620213
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 8620213
    reference: chr 4
allele count: 5
allele frequency: 4.130592822681911e-5
allele num: 121048
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000354255
  ensembl transcript: ENST00000360986
  gene symbol: CPZ
  hgvsc: ENST00000360986.4:c.1561G>A
  hgvsp: ENSP00000354255.4:p.Ala521Thr
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000371920
  ensembl transcript: ENST00000382480
  gene symbol: CPZ
  hgvsc: ENST00000382480.2:c.1150G>A
  hgvsp: ENSP00000371920.2:p.Ala384Thr
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000422693
  ensembl transcript: ENST00000515606
  gene symbol: CPZ
  hgvsc: ENST00000515606.1:c.*1614G>A
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000315074
  ensembl transcript: ENST00000315782
  gene symbol: CPZ
  hgvsc: ENST00000315782.6:c.1528G>A
  hgvsp: ENSP00000315074.6:p.Ala510Thr
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000155269
  ensembl protein: ENSP00000424326
  ensembl transcript: ENST00000514302
  gene symbol: GPR78
  hgvsc: ENST00000514302.1:c.*1576G>A
  variant of: http://identifiers.org/hgnc/4528
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000403981
  ensembl transcript: ENST00000429646
  gene symbol: CPZ
  hgvsc: ENST00000429646.2:c.385G>A
  hgvsp: ENSP00000403981.2:p.Ala129Thr
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000155269
  ensembl transcript: ENST00000513120
  gene symbol: GPR78
  hgvsc: ENST00000513120.1:n.3178G>A
  variant of: http://identifiers.org/hgnc/4528
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000109625
  ensembl transcript: ENST00000513486
  gene symbol: CPZ
  hgvsc: ENST00000513486.1:n.395G>A
  variant of: http://identifiers.org/hgnc/2333
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1778
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17588
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 707
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 28310
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9465
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 305
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 353
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2090
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 9204
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Ala521Thr
num of homozygotes: 0
population: African
population: European (Finnish)
population: South Asian
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: QD

4-8620214-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8620214
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 8620214
    reference: chr 4
allele count: 1
allele frequency: 8.262277744728666e-6
allele num: 121032
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000371920
  ensembl transcript: ENST00000382480
  gene symbol: CPZ
  hgvsc: ENST00000382480.2:c.1151C>G
  hgvsp: ENSP00000371920.2:p.Ala384Gly
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000354255
  ensembl transcript: ENST00000360986
  gene symbol: CPZ
  hgvsc: ENST00000360986.4:c.1562C>G
  hgvsp: ENSP00000354255.4:p.Ala521Gly
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000422693
  ensembl transcript: ENST00000515606
  gene symbol: CPZ
  hgvsc: ENST00000515606.1:c.*1615C>G
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000155269
  ensembl protein: ENSP00000424326
  ensembl transcript: ENST00000514302
  gene symbol: GPR78
  hgvsc: ENST00000514302.1:c.*1577C>G
  variant of: http://identifiers.org/hgnc/4528
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000315074
  ensembl transcript: ENST00000315782
  gene symbol: CPZ
  hgvsc: ENST00000315782.6:c.1529C>G
  hgvsp: ENSP00000315074.6:p.Ala510Gly
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000109625
  ensembl transcript: ENST00000513486
  gene symbol: CPZ
  hgvsc: ENST00000513486.1:n.396C>G
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000403981
  ensembl transcript: ENST00000429646
  gene symbol: CPZ
  hgvsc: ENST00000429646.2:c.386C>G
  hgvsp: ENSP00000403981.2:p.Ala129Gly
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000155269
  ensembl transcript: ENST00000513120
  gene symbol: GPR78
  hgvsc: ENST00000513120.1:n.3179C>G
  variant of: http://identifiers.org/hgnc/4528
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9457
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28322
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17582
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1772
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 701
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42999
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Ala521Gly
num of homozygotes: 0
population: Other
population: East Asian
population: South Asian
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff

4-8620214-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8620214
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 8620214
    reference: chr 4
allele count: 1
allele frequency: 8.262277744728666e-6
allele num: 121032
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000354255
  ensembl transcript: ENST00000360986
  gene symbol: CPZ
  hgvsc: ENST00000360986.4:c.1562C>T
  hgvsp: ENSP00000354255.4:p.Ala521Val
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000155269
  ensembl protein: ENSP00000424326
  ensembl transcript: ENST00000514302
  gene symbol: GPR78
  hgvsc: ENST00000514302.1:c.*1577C>T
  variant of: http://identifiers.org/hgnc/4528
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000371920
  ensembl transcript: ENST00000382480
  gene symbol: CPZ
  hgvsc: ENST00000382480.2:c.1151C>T
  hgvsp: ENSP00000371920.2:p.Ala384Val
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000315074
  ensembl transcript: ENST00000315782
  gene symbol: CPZ
  hgvsc: ENST00000315782.6:c.1529C>T
  hgvsp: ENSP00000315074.6:p.Ala510Val
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000403981
  ensembl transcript: ENST00000429646
  gene symbol: CPZ
  hgvsc: ENST00000429646.2:c.386C>T
  hgvsp: ENSP00000403981.2:p.Ala129Val
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000155269
  ensembl transcript: ENST00000513120
  gene symbol: GPR78
  hgvsc: ENST00000513120.1:n.3179C>T
  variant of: http://identifiers.org/hgnc/4528
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000422693
  ensembl transcript: ENST00000515606
  gene symbol: CPZ
  hgvsc: ENST00000515606.1:c.*1615C>T
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000109625
  ensembl transcript: ENST00000513486
  gene symbol: CPZ
  hgvsc: ENST00000513486.1:n.396C>T
  variant of: http://identifiers.org/hgnc/2333
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 701
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17582
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9457
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1772
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28322
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 852
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2087
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 42999
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 369
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Ala521Val
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: C
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum

4-8620216-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8620216
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 8620216
    reference: chr 4
allele count: 1
allele frequency: 8.267332462507647e-6
allele num: 120958
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000354255
  ensembl transcript: ENST00000360986
  gene symbol: CPZ
  hgvsc: ENST00000360986.4:c.1564C>T
  hgvsp: ENSP00000354255.4:p.Arg522Trp
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000371920
  ensembl transcript: ENST00000382480
  gene symbol: CPZ
  hgvsc: ENST00000382480.2:c.1153C>T
  hgvsp: ENSP00000371920.2:p.Arg385Trp
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000109625
  ensembl transcript: ENST00000513486
  gene symbol: CPZ
  hgvsc: ENST00000513486.1:n.398C>T
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000315074
  ensembl transcript: ENST00000315782
  gene symbol: CPZ
  hgvsc: ENST00000315782.6:c.1531C>T
  hgvsp: ENSP00000315074.6:p.Arg511Trp
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000422693
  ensembl transcript: ENST00000515606
  gene symbol: CPZ
  hgvsc: ENST00000515606.1:c.*1617C>T
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000155269
  ensembl protein: ENSP00000424326
  ensembl transcript: ENST00000514302
  gene symbol: GPR78
  hgvsc: ENST00000514302.1:c.*1579C>T
  variant of: http://identifiers.org/hgnc/4528
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000403981
  ensembl transcript: ENST00000429646
  gene symbol: CPZ
  hgvsc: ENST00000429646.2:c.388C>T
  hgvsp: ENSP00000403981.2:p.Arg130Trp
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000155269
  ensembl transcript: ENST00000513120
  gene symbol: GPR78
  hgvsc: ENST00000513120.1:n.3181C>T
  variant of: http://identifiers.org/hgnc/4528
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 709
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1776
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9453
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28290
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17530
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42921
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2140
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 849
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Arg522Trp
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
population: Latino
reference allele: C
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum

4-8620217-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8620217
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 8620217
    reference: chr 4
allele count: 7
allele frequency: 5.787611204815293e-5
allele num: 120948
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000354255
  ensembl transcript: ENST00000360986
  gene symbol: CPZ
  hgvsc: ENST00000360986.4:c.1565G>A
  hgvsp: ENSP00000354255.4:p.Arg522Gln
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000422693
  ensembl transcript: ENST00000515606
  gene symbol: CPZ
  hgvsc: ENST00000515606.1:c.*1618G>A
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000155269
  ensembl transcript: ENST00000513120
  gene symbol: GPR78
  hgvsc: ENST00000513120.1:n.3182G>A
  variant of: http://identifiers.org/hgnc/4528
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000109625
  ensembl transcript: ENST00000513486
  gene symbol: CPZ
  hgvsc: ENST00000513486.1:n.399G>A
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000371920
  ensembl transcript: ENST00000382480
  gene symbol: CPZ
  hgvsc: ENST00000382480.2:c.1154G>A
  hgvsp: ENSP00000371920.2:p.Arg385Gln
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000315074
  ensembl transcript: ENST00000315782
  gene symbol: CPZ
  hgvsc: ENST00000315782.6:c.1532G>A
  hgvsp: ENSP00000315074.6:p.Arg511Gln
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000155269
  ensembl protein: ENSP00000424326
  ensembl transcript: ENST00000514302
  gene symbol: GPR78
  hgvsc: ENST00000514302.1:c.*1580G>A
  variant of: http://identifiers.org/hgnc/4528
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000403981
  ensembl transcript: ENST00000429646
  gene symbol: CPZ
  hgvsc: ENST00000429646.2:c.389G>A
  hgvsp: ENSP00000403981.2:p.Arg130Gln
  variant of: http://identifiers.org/hgnc/2333
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1768
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 702
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 17483
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9446
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28308
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 300
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 447
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42893
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 848
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Arg522Gln
num of homozygotes: 0
population: Other
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP

4-8620218-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8620218
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 8620218
    reference: chr 4
allele count: 139
allele frequency: 1.149368260898326e-3
allele num: 120936
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000371920
  ensembl transcript: ENST00000382480
  gene symbol: CPZ
  hgvsc: ENST00000382480.2:c.1155G>T
  hgvsp: ENST00000382480.2:c.1155G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000109625
  ensembl transcript: ENST00000513486
  gene symbol: CPZ
  hgvsc: ENST00000513486.1:n.400G>T
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000155269
  ensembl protein: ENSP00000424326
  ensembl transcript: ENST00000514302
  gene symbol: GPR78
  hgvsc: ENST00000514302.1:c.*1581G>T
  variant of: http://identifiers.org/hgnc/4528
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000354255
  ensembl transcript: ENST00000360986
  gene symbol: CPZ
  hgvsc: ENST00000360986.4:c.1566G>T
  hgvsp: ENST00000360986.4:c.1566G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000422693
  ensembl transcript: ENST00000515606
  gene symbol: CPZ
  hgvsc: ENST00000515606.1:c.*1619G>T
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000315074
  ensembl transcript: ENST00000315782
  gene symbol: CPZ
  hgvsc: ENST00000315782.6:c.1533G>T
  hgvsp: ENST00000315782.6:c.1533G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000403981
  ensembl transcript: ENST00000429646
  gene symbol: CPZ
  hgvsc: ENST00000429646.2:c.390G>T
  hgvsp: ENST00000429646.2:c.390G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000155269
  ensembl transcript: ENST00000513120
  gene symbol: GPR78
  hgvsc: ENST00000513120.1:n.3183G>T
  variant of: http://identifiers.org/hgnc/4528
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 17457
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 701
  bin: 4.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 7.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9408
  bin: 3.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28297
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 4.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 9.75e1
  variant carriers: 33
genotype depth: GenotypeDepth
  all individuals: 1759
  bin: 3.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 6.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 5.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 5.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 6.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 291
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Arg522Arg
num of homozygotes: 0
population: East Asian
population: Other
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Latino
population: African
reference allele: G
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum

4-8620221-CTCAG-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8620221
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 8620217
    reference: chr 4
allele count: 8
allele frequency: 6.620214825971103e-5
allele num: 120842
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000371920
  ensembl transcript: ENST00000382480
  gene symbol: CPZ
  hgvsc: ENST00000382480.2:c.1162_1165delGTCA
  hgvsp: ENSP00000371920.2:p.Val388LysfsTer46
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000315074
  ensembl transcript: ENST00000315782
  gene symbol: CPZ
  hgvsc: ENST00000315782.6:c.1540_1543delGTCA
  hgvsp: ENSP00000315074.6:p.Val514LysfsTer46
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000354255
  ensembl transcript: ENST00000360986
  gene symbol: CPZ
  hgvsc: ENST00000360986.4:c.1573_1576delGTCA
  hgvsp: ENSP00000354255.4:p.Val525LysfsTer46
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000109625
  ensembl transcript: ENST00000513486
  gene symbol: CPZ
  hgvsc: ENST00000513486.1:n.407_410delGTCA
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000403981
  ensembl transcript: ENST00000429646
  gene symbol: CPZ
  hgvsc: ENST00000429646.2:c.397_400delGTCA
  hgvsp: ENSP00000403981.2:p.Val133LysfsTer46
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000422693
  ensembl transcript: ENST00000515606
  gene symbol: CPZ
  hgvsc: ENST00000515606.1:c.*1626_*1629delGTCA
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000155269
  ensembl transcript: ENST00000513120
  gene symbol: GPR78
  hgvsc: ENST00000513120.1:n.3190_3193delGTCA
  variant of: http://identifiers.org/hgnc/4528
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000155269
  ensembl protein: ENSP00000424326
  ensembl transcript: ENST00000514302
  gene symbol: GPR78
  hgvsc: ENST00000514302.1:c.*1588_*1591delGTCA
  variant of: http://identifiers.org/hgnc/4528
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17372
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28304
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 693
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1745
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9430
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2134
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2039
  bin: 9.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 838
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Val525LysfsTer46
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: European (Finnish)
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: CTCAG
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum

4-8620223-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8620223
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 8620223
    reference: chr 4
allele count: 1
allele frequency: 8.289262089888757e-6
allele num: 120638
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000155269
  ensembl protein: ENSP00000424326
  ensembl transcript: ENST00000514302
  gene symbol: GPR78
  hgvsc: ENST00000514302.1:c.*1586C>T
  variant of: http://identifiers.org/hgnc/4528
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000354255
  ensembl transcript: ENST00000360986
  gene symbol: CPZ
  hgvsc: ENST00000360986.4:c.1571C>T
  hgvsp: ENSP00000354255.4:p.Ser524Leu
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000315074
  ensembl transcript: ENST00000315782
  gene symbol: CPZ
  hgvsc: ENST00000315782.6:c.1538C>T
  hgvsp: ENSP00000315074.6:p.Ser513Leu
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000371920
  ensembl transcript: ENST00000382480
  gene symbol: CPZ
  hgvsc: ENST00000382480.2:c.1160C>T
  hgvsp: ENSP00000371920.2:p.Ser387Leu
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000109625
  ensembl transcript: ENST00000513486
  gene symbol: CPZ
  hgvsc: ENST00000513486.1:n.405C>T
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000403981
  ensembl transcript: ENST00000429646
  gene symbol: CPZ
  hgvsc: ENST00000429646.2:c.395C>T
  hgvsp: ENSP00000403981.2:p.Ser132Leu
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000155269
  ensembl transcript: ENST00000513120
  gene symbol: GPR78
  hgvsc: ENST00000513120.1:n.3188C>T
  variant of: http://identifiers.org/hgnc/4528
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000422693
  ensembl transcript: ENST00000515606
  gene symbol: CPZ
  hgvsc: ENST00000515606.1:c.*1624C>T
  variant of: http://identifiers.org/hgnc/2333
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 590
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 694
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28229
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17125
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1742
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9432
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1960
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9123
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 148
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Ser524Leu
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: MQ

4-8620226-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8620226
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 8620226
    reference: chr 4
allele count: 2
allele frequency: 1.66159879035608e-5
allele num: 120366
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000315074
  ensembl transcript: ENST00000315782
  gene symbol: CPZ
  hgvsc: ENST00000315782.6:c.1541T>A
  hgvsp: ENSP00000315074.6:p.Val514Asp
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000403981
  ensembl transcript: ENST00000429646
  gene symbol: CPZ
  hgvsc: ENST00000429646.2:c.398T>A
  hgvsp: ENSP00000403981.2:p.Val133Asp
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000354255
  ensembl transcript: ENST00000360986
  gene symbol: CPZ
  hgvsc: ENST00000360986.4:c.1574T>A
  hgvsp: ENSP00000354255.4:p.Val525Asp
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000371920
  ensembl transcript: ENST00000382480
  gene symbol: CPZ
  hgvsc: ENST00000382480.2:c.1163T>A
  hgvsp: ENSP00000371920.2:p.Val388Asp
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000155269
  ensembl transcript: ENST00000513120
  gene symbol: GPR78
  hgvsc: ENST00000513120.1:n.3191T>A
  variant of: http://identifiers.org/hgnc/4528
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000422693
  ensembl transcript: ENST00000515606
  gene symbol: CPZ
  hgvsc: ENST00000515606.1:c.*1627T>A
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000155269
  ensembl protein: ENSP00000424326
  ensembl transcript: ENST00000514302
  gene symbol: GPR78
  hgvsc: ENST00000514302.1:c.*1589T>A
  variant of: http://identifiers.org/hgnc/4528
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000109625
  ensembl transcript: ENST00000513486
  gene symbol: CPZ
  hgvsc: ENST00000513486.1:n.408T>A
  variant of: http://identifiers.org/hgnc/2333
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9389
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 692
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28073
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1742
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16851
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 495
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 825
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9001
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 240
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2033
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Val525Asp
num of homozygotes: 0
population: African
population: East Asian
population: Other
population: European (Finnish)
population: South Asian
population: Latino
population: European (Non-Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD

4-8620227-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8620227
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 8620227
    reference: chr 4
allele count: 1
allele frequency: 8.307165761185599e-6
allele num: 120378
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000109625
  ensembl transcript: ENST00000513486
  gene symbol: CPZ
  hgvsc: ENST00000513486.1:n.409C>G
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000371920
  ensembl transcript: ENST00000382480
  gene symbol: CPZ
  hgvsc: ENST00000382480.2:c.1164C>G
  hgvsp: ENST00000382480.2:c.1164C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000315074
  ensembl transcript: ENST00000315782
  gene symbol: CPZ
  hgvsc: ENST00000315782.6:c.1542C>G
  hgvsp: ENST00000315782.6:c.1542C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000155269
  ensembl transcript: ENST00000513120
  gene symbol: GPR78
  hgvsc: ENST00000513120.1:n.3192C>G
  variant of: http://identifiers.org/hgnc/4528
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000354255
  ensembl transcript: ENST00000360986
  gene symbol: CPZ
  hgvsc: ENST00000360986.4:c.1575C>G
  hgvsp: ENST00000360986.4:c.1575C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000155269
  ensembl protein: ENSP00000424326
  ensembl transcript: ENST00000514302
  gene symbol: GPR78
  hgvsc: ENST00000514302.1:c.*1590C>G
  variant of: http://identifiers.org/hgnc/4528
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000403981
  ensembl transcript: ENST00000429646
  gene symbol: CPZ
  hgvsc: ENST00000429646.2:c.399C>G
  hgvsp: ENST00000429646.2:c.399C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000422693
  ensembl transcript: ENST00000515606
  gene symbol: CPZ
  hgvsc: ENST00000515606.1:c.*1628C>G
  variant of: http://identifiers.org/hgnc/2333
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9378
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28073
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16857
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1746
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 826
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 695
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8978
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 204
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 353
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 287
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Val525Val
num of homozygotes: 0
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: African
reference allele: C
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/4-8620229-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8620229
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 8620229
    reference: chr 4
allele count: 1
allele frequency: 8.311861025683651e-6
allele num: 120310
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000371920
  ensembl transcript: ENST00000382480
  gene symbol: CPZ
  hgvsc: ENST00000382480.2:c.1166A>C
  hgvsp: ENSP00000371920.2:p.Lys389Thr
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000354255
  ensembl transcript: ENST00000360986
  gene symbol: CPZ
  hgvsc: ENST00000360986.4:c.1577A>C
  hgvsp: ENSP00000354255.4:p.Lys526Thr
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000155269
  ensembl protein: ENSP00000424326
  ensembl transcript: ENST00000514302
  gene symbol: GPR78
  hgvsc: ENST00000514302.1:c.*1592A>C
  variant of: http://identifiers.org/hgnc/4528
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000109625
  ensembl transcript: ENST00000513486
  gene symbol: CPZ
  hgvsc: ENST00000513486.1:n.411A>C
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000422693
  ensembl transcript: ENST00000515606
  gene symbol: CPZ
  hgvsc: ENST00000515606.1:c.*1630A>C
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000155269
  ensembl transcript: ENST00000513120
  gene symbol: GPR78
  hgvsc: ENST00000513120.1:n.3194A>C
  variant of: http://identifiers.org/hgnc/4528
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000403981
  ensembl transcript: ENST00000429646
  gene symbol: CPZ
  hgvsc: ENST00000429646.2:c.401A>C
  hgvsp: ENSP00000403981.2:p.Lys134Thr
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000315074
  ensembl transcript: ENST00000315782
  gene symbol: CPZ
  hgvsc: ENST00000315782.6:c.1544A>C
  hgvsp: ENSP00000315074.6:p.Lys515Thr
  variant of: http://identifiers.org/hgnc/2333
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1740
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28034
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 895
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16788
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9357
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8971
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2033
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1135
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 828
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 287
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Lys526Thr
num of homozygotes: 0
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: African
reference allele: A
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP

4-8620230-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8620230
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 8620230
    reference: chr 4
allele count: 2
allele frequency: 1.663395322532353e-5
allele num: 120236
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000371920
  ensembl transcript: ENST00000382480
  gene symbol: CPZ
  hgvsc: ENST00000382480.2:c.1167A>G
  hgvsp: ENST00000382480.2:c.1167A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000155269
  ensembl protein: ENSP00000424326
  ensembl transcript: ENST00000514302
  gene symbol: GPR78
  hgvsc: ENST00000514302.1:c.*1593A>G
  variant of: http://identifiers.org/hgnc/4528
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000354255
  ensembl transcript: ENST00000360986
  gene symbol: CPZ
  hgvsc: ENST00000360986.4:c.1578A>G
  hgvsp: ENST00000360986.4:c.1578A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000403981
  ensembl transcript: ENST00000429646
  gene symbol: CPZ
  hgvsc: ENST00000429646.2:c.402A>G
  hgvsp: ENST00000429646.2:c.402A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000422693
  ensembl transcript: ENST00000515606
  gene symbol: CPZ
  hgvsc: ENST00000515606.1:c.*1631A>G
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000109625
  ensembl transcript: ENST00000513486
  gene symbol: CPZ
  hgvsc: ENST00000513486.1:n.412A>G
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000315074
  ensembl transcript: ENST00000315782
  gene symbol: CPZ
  hgvsc: ENST00000315782.6:c.1545A>G
  hgvsp: ENST00000315782.6:c.1545A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000155269
  ensembl transcript: ENST00000513120
  gene symbol: GPR78
  hgvsc: ENST00000513120.1:n.3195A>G
  variant of: http://identifiers.org/hgnc/4528
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16740
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9362
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 948
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 694
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27967
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1735
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8944
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 180
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41830
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Lys526Lys
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: A
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum

4-8620233-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8620233
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 8620233
    reference: chr 4
allele count: 1
allele frequency: 8.33694600993764e-6
allele num: 119948
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000422693
  ensembl transcript: ENST00000515606
  gene symbol: CPZ
  hgvsc: ENST00000515606.1:c.*1634C>T
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000354255
  ensembl transcript: ENST00000360986
  gene symbol: CPZ
  hgvsc: ENST00000360986.4:c.1581C>T
  hgvsp: ENST00000360986.4:c.1581C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000109625
  ensembl transcript: ENST00000513486
  gene symbol: CPZ
  hgvsc: ENST00000513486.1:n.415C>T
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000155269
  ensembl transcript: ENST00000513120
  gene symbol: GPR78
  hgvsc: ENST00000513120.1:n.3198C>T
  variant of: http://identifiers.org/hgnc/4528
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000403981
  ensembl transcript: ENST00000429646
  gene symbol: CPZ
  hgvsc: ENST00000429646.2:c.405C>T
  hgvsp: ENST00000429646.2:c.405C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000371920
  ensembl transcript: ENST00000382480
  gene symbol: CPZ
  hgvsc: ENST00000382480.2:c.1170C>T
  hgvsp: ENST00000382480.2:c.1170C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000155269
  ensembl protein: ENSP00000424326
  ensembl transcript: ENST00000514302
  gene symbol: GPR78
  hgvsc: ENST00000514302.1:c.*1596C>T
  variant of: http://identifiers.org/hgnc/4528
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000315074
  ensembl transcript: ENST00000315782
  gene symbol: CPZ
  hgvsc: ENST00000315782.6:c.1548C>T
  hgvsp: ENST00000315782.6:c.1548C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2333
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1737
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16469
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27759
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9292
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 713
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1253
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1908
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 287
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 179
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2030
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 207
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Gly527Gly
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: InbreedingCoeff

4-8620237-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8620237
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 8620237
    reference: chr 4
allele count: 11
allele frequency: 9.196555471950506e-5
allele num: 119610
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000109625
  ensembl transcript: ENST00000513486
  gene symbol: CPZ
  hgvsc: ENST00000513486.1:n.419C>T
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000422693
  ensembl transcript: ENST00000515606
  gene symbol: CPZ
  hgvsc: ENST00000515606.1:c.*1638C>T
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000315074
  ensembl transcript: ENST00000315782
  gene symbol: CPZ
  hgvsc: ENST00000315782.6:c.1552C>T
  hgvsp: ENSP00000315074.6:p.Arg518Cys
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000403981
  ensembl transcript: ENST00000429646
  gene symbol: CPZ
  hgvsc: ENST00000429646.2:c.409C>T
  hgvsp: ENSP00000403981.2:p.Arg137Cys
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000354255
  ensembl transcript: ENST00000360986
  gene symbol: CPZ
  hgvsc: ENST00000360986.4:c.1585C>T
  hgvsp: ENSP00000354255.4:p.Arg529Cys
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000155269
  ensembl transcript: ENST00000513120
  gene symbol: GPR78
  hgvsc: ENST00000513120.1:n.3202C>T
  variant of: http://identifiers.org/hgnc/4528
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000155269
  ensembl protein: ENSP00000424326
  ensembl transcript: ENST00000514302
  gene symbol: GPR78
  hgvsc: ENST00000514302.1:c.*1600C>T
  variant of: http://identifiers.org/hgnc/4528
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000371920
  ensembl transcript: ENST00000382480
  gene symbol: CPZ
  hgvsc: ENST00000382480.2:c.1174C>T
  hgvsp: ENSP00000371920.2:p.Arg392Cys
  variant of: http://identifiers.org/hgnc/2333
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1734
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 861
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 27429
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 696
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16319
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1573
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9203
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 285
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1910
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 258
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 430
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Arg529Cys
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff

4-8620238-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8620238
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 8620238
    reference: chr 4
allele count: 20
allele frequency: 1.67319211591875e-4
allele num: 119532
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000315074
  ensembl transcript: ENST00000315782
  gene symbol: CPZ
  hgvsc: ENST00000315782.6:c.1553G>A
  hgvsp: ENSP00000315074.6:p.Arg518His
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000354255
  ensembl transcript: ENST00000360986
  gene symbol: CPZ
  hgvsc: ENST00000360986.4:c.1586G>A
  hgvsp: ENSP00000354255.4:p.Arg529His
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000422693
  ensembl transcript: ENST00000515606
  gene symbol: CPZ
  hgvsc: ENST00000515606.1:c.*1639G>A
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000155269
  ensembl protein: ENSP00000424326
  ensembl transcript: ENST00000514302
  gene symbol: GPR78
  hgvsc: ENST00000514302.1:c.*1601G>A
  variant of: http://identifiers.org/hgnc/4528
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000371920
  ensembl transcript: ENST00000382480
  gene symbol: CPZ
  hgvsc: ENST00000382480.2:c.1175G>A
  hgvsp: ENSP00000371920.2:p.Arg392His
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000403981
  ensembl transcript: ENST00000429646
  gene symbol: CPZ
  hgvsc: ENST00000429646.2:c.410G>A
  hgvsp: ENSP00000403981.2:p.Arg137His
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000155269
  ensembl transcript: ENST00000513120
  gene symbol: GPR78
  hgvsc: ENST00000513120.1:n.3203G>A
  variant of: http://identifiers.org/hgnc/4528
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000109625
  ensembl transcript: ENST00000513486
  gene symbol: CPZ
  hgvsc: ENST00000513486.1:n.420G>A
  variant of: http://identifiers.org/hgnc/2333
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1718
  bin: 3.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 648
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9141
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16290
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 27368
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 903
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 694
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1672
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1857
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 456
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40349
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 424
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 457
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8695
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Arg529His
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum

4-8620238-GCCACGACATCA-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8620238
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 8620227
    reference: chr 4
allele count: 1
allele frequency: 8.365960579593749e-6
allele num: 119532
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000315074
  ensembl transcript: ENST00000315782
  gene symbol: CPZ
  hgvsp: ENSP00000315074.6:p.Asp520SerfsTer5
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000109625
  ensembl transcript: ENST00000513486
  gene symbol: CPZ
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000155269
  ensembl protein: ENSP00000424326
  ensembl transcript: ENST00000514302
  gene symbol: GPR78
  variant of: http://identifiers.org/hgnc/4528
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000371920
  ensembl transcript: ENST00000382480
  gene symbol: CPZ
  hgvsp: ENSP00000371920.2:p.Asp394SerfsTer5
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000403981
  ensembl transcript: ENST00000429646
  gene symbol: CPZ
  hgvsp: ENSP00000403981.2:p.Asp139SerfsTer5
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000155269
  ensembl transcript: ENST00000513120
  gene symbol: GPR78
  variant of: http://identifiers.org/hgnc/4528
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000354255
  ensembl transcript: ENST00000360986
  gene symbol: CPZ
  hgvsp: ENSP00000354255.4:p.Asp531SerfsTer5
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000422693
  ensembl transcript: ENST00000515606
  gene symbol: CPZ
  variant of: http://identifiers.org/hgnc/2333
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 903
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1672
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16290
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9141
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1718
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 648
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27368
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 694
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1857
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 424
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40349
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 802
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2012
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 456
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Asp531SerfsTer5
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
population: European (Finnish)
population: Other
reference allele: GCCACGACATCA
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: MQ

4-8620239-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8620239
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 8620239
    reference: chr 4
allele count: 1
allele frequency: 8.372825158665037e-6
allele num: 119434
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000109625
  ensembl transcript: ENST00000513486
  gene symbol: CPZ
  hgvsc: ENST00000513486.1:n.421C>T
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000371920
  ensembl transcript: ENST00000382480
  gene symbol: CPZ
  hgvsc: ENST00000382480.2:c.1176C>T
  hgvsp: ENST00000382480.2:c.1176C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000354255
  ensembl transcript: ENST00000360986
  gene symbol: CPZ
  hgvsc: ENST00000360986.4:c.1587C>T
  hgvsp: ENST00000360986.4:c.1587C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000315074
  ensembl transcript: ENST00000315782
  gene symbol: CPZ
  hgvsc: ENST00000315782.6:c.1554C>T
  hgvsp: ENST00000315782.6:c.1554C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000155269
  ensembl transcript: ENST00000513120
  gene symbol: GPR78
  hgvsc: ENST00000513120.1:n.3204C>T
  variant of: http://identifiers.org/hgnc/4528
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000155269
  ensembl protein: ENSP00000424326
  ensembl transcript: ENST00000514302
  gene symbol: GPR78
  hgvsc: ENST00000514302.1:c.*1602C>T
  variant of: http://identifiers.org/hgnc/4528
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000403981
  ensembl transcript: ENST00000429646
  gene symbol: CPZ
  hgvsc: ENST00000429646.2:c.411C>T
  hgvsp: ENST00000429646.2:c.411C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000422693
  ensembl transcript: ENST00000515606
  gene symbol: CPZ
  hgvsc: ENST00000515606.1:c.*1640C>T
  variant of: http://identifiers.org/hgnc/2333
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16283
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27271
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1709
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1787
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9085
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 952
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1995
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 454
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2017
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 284
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 345
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Arg529Arg
num of homozygotes: 0
population: East Asian
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: C
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQ

4-8620240-CACG-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8620240
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 8620237
    reference: chr 4
allele count: 2
allele frequency: 1.677176975714477e-5
allele num: 119248
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000109625
  ensembl transcript: ENST00000513486
  gene symbol: CPZ
  hgvsc: ENST00000513486.1:n.425_427delGAC
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000422693
  ensembl transcript: ENST00000515606
  gene symbol: CPZ
  hgvsc: ENST00000515606.1:c.*1644_*1646delGAC
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000403981
  ensembl transcript: ENST00000429646
  gene symbol: CPZ
  hgvsc: ENST00000429646.2:c.415_417delGAC
  hgvsp: ENSP00000403981.2:p.Asp139del
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000371920
  ensembl transcript: ENST00000382480
  gene symbol: CPZ
  hgvsc: ENST00000382480.2:c.1180_1182delGAC
  hgvsp: ENSP00000371920.2:p.Asp394del
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000155269
  ensembl protein: ENSP00000424326
  ensembl transcript: ENST00000514302
  gene symbol: GPR78
  hgvsc: ENST00000514302.1:c.*1606_*1608delGAC
  variant of: http://identifiers.org/hgnc/4528
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000354255
  ensembl transcript: ENST00000360986
  gene symbol: CPZ
  hgvsc: ENST00000360986.4:c.1591_1593delGAC
  hgvsp: ENSP00000354255.4:p.Asp531del
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000155269
  ensembl transcript: ENST00000513120
  gene symbol: GPR78
  hgvsc: ENST00000513120.1:n.3208_3210delGAC
  variant of: http://identifiers.org/hgnc/4528
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000315074
  ensembl transcript: ENST00000315782
  gene symbol: CPZ
  hgvsc: ENST00000315782.6:c.1558_1560delGAC
  hgvsp: ENSP00000315074.6:p.Asp520del
  variant of: http://identifiers.org/hgnc/2333
canonical: true
consequence: inframe deletion
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1931
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 722
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27121
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9061
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16180
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1702
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 688
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1036
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2312
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 796
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 459
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 205
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39906
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Asp531del
num of homozygotes: 0
population: European (Finnish)
population: African
population: East Asian
population: Latino
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: CACG
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: ReadPosRankSum

4-8620241-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8620241
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 8620241
    reference: chr 4
allele count: 1
allele frequency: 8.38447865311735e-6
allele num: 119268
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000422693
  ensembl transcript: ENST00000515606
  gene symbol: CPZ
  hgvsc: ENST00000515606.1:c.*1642A>G
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000155269
  ensembl transcript: ENST00000513120
  gene symbol: GPR78
  hgvsc: ENST00000513120.1:n.3206A>G
  variant of: http://identifiers.org/hgnc/4528
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000109625
  ensembl transcript: ENST00000513486
  gene symbol: CPZ
  hgvsc: ENST00000513486.1:n.423A>G
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000155269
  ensembl protein: ENSP00000424326
  ensembl transcript: ENST00000514302
  gene symbol: GPR78
  hgvsc: ENST00000514302.1:c.*1604A>G
  variant of: http://identifiers.org/hgnc/4528
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000354255
  ensembl transcript: ENST00000360986
  gene symbol: CPZ
  hgvsc: ENST00000360986.4:c.1589A>G
  hgvsp: ENSP00000354255.4:p.His530Arg
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000315074
  ensembl transcript: ENST00000315782
  gene symbol: CPZ
  hgvsc: ENST00000315782.6:c.1556A>G
  hgvsp: ENSP00000315074.6:p.His519Arg
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000371920
  ensembl transcript: ENST00000382480
  gene symbol: CPZ
  hgvsc: ENST00000382480.2:c.1178A>G
  hgvsp: ENSP00000371920.2:p.His393Arg
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000403981
  ensembl transcript: ENST00000429646
  gene symbol: CPZ
  hgvsc: ENST00000429646.2:c.413A>G
  hgvsp: ENSP00000403981.2:p.His138Arg
  variant of: http://identifiers.org/hgnc/2333
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16233
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1697
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9004
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 686
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 710
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27127
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1045
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1939
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 191
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1830
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 344
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2324
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
hgvs: p.His530Arg
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: Other
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: VQSLOD

4-8620242-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8620242
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 8620242
    reference: chr 4
allele count: 1
allele frequency: 8.393345755485052e-6
allele num: 119142
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000155269
  ensembl transcript: ENST00000513120
  gene symbol: GPR78
  hgvsc: ENST00000513120.1:n.3207C>T
  variant of: http://identifiers.org/hgnc/4528
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000354255
  ensembl transcript: ENST00000360986
  gene symbol: CPZ
  hgvsc: ENST00000360986.4:c.1590C>T
  hgvsp: ENST00000360986.4:c.1590C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000371920
  ensembl transcript: ENST00000382480
  gene symbol: CPZ
  hgvsc: ENST00000382480.2:c.1179C>T
  hgvsp: ENST00000382480.2:c.1179C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000155269
  ensembl protein: ENSP00000424326
  ensembl transcript: ENST00000514302
  gene symbol: GPR78
  hgvsc: ENST00000514302.1:c.*1605C>T
  variant of: http://identifiers.org/hgnc/4528
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000315074
  ensembl transcript: ENST00000315782
  gene symbol: CPZ
  hgvsc: ENST00000315782.6:c.1557C>T
  hgvsp: ENST00000315782.6:c.1557C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000109625
  ensembl transcript: ENST00000513486
  gene symbol: CPZ
  hgvsc: ENST00000513486.1:n.424C>T
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000422693
  ensembl transcript: ENST00000515606
  gene symbol: CPZ
  hgvsc: ENST00000515606.1:c.*1643C>T
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000403981
  ensembl transcript: ENST00000429646
  gene symbol: CPZ
  hgvsc: ENST00000429646.2:c.414C>T
  hgvsp: ENST00000429646.2:c.414C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2333
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 27041
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16194
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8981
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1091
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 723
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2014
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1705
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2422
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 301
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2012
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 284
  bin: 8.75e1
  variant carriers: 0
hgvs: p.His530His
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: Other
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: QD

4-8620243-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8620243
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 8620243
    reference: chr 4
allele count: 4
allele frequency: 3.360440889844748e-5
allele num: 119032
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000403981
  ensembl transcript: ENST00000429646
  gene symbol: CPZ
  hgvsc: ENST00000429646.2:c.415G>A
  hgvsp: ENSP00000403981.2:p.Asp139Asn
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000371920
  ensembl transcript: ENST00000382480
  gene symbol: CPZ
  hgvsc: ENST00000382480.2:c.1180G>A
  hgvsp: ENSP00000371920.2:p.Asp394Asn
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000315074
  ensembl transcript: ENST00000315782
  gene symbol: CPZ
  hgvsc: ENST00000315782.6:c.1558G>A
  hgvsp: ENSP00000315074.6:p.Asp520Asn
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000109625
  ensembl transcript: ENST00000513486
  gene symbol: CPZ
  hgvsc: ENST00000513486.1:n.425G>A
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000354255
  ensembl transcript: ENST00000360986
  gene symbol: CPZ
  hgvsc: ENST00000360986.4:c.1591G>A
  hgvsp: ENSP00000354255.4:p.Asp531Asn
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000155269
  ensembl protein: ENSP00000424326
  ensembl transcript: ENST00000514302
  gene symbol: GPR78
  hgvsc: ENST00000514302.1:c.*1606G>A
  variant of: http://identifiers.org/hgnc/4528
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000155269
  ensembl transcript: ENST00000513120
  gene symbol: GPR78
  hgvsc: ENST00000513120.1:n.3208G>A
  variant of: http://identifiers.org/hgnc/4528
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000422693
  ensembl transcript: ENST00000515606
  gene symbol: CPZ
  hgvsc: ENST00000515606.1:c.*1644G>A
  variant of: http://identifiers.org/hgnc/2333
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16170
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1145
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 750
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 684
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2124
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26907
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8955
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1705
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 555
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40038
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 279
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2012
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 2548
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Asp531Asn
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
population: African
reference allele: G
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: QD

4-8620243-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8620243
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 8620243
    reference: chr 4
allele count: 1
allele frequency: 8.401102224611869e-6
allele num: 119032
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000422693
  ensembl transcript: ENST00000515606
  gene symbol: CPZ
  hgvsc: ENST00000515606.1:c.*1644G>C
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000109625
  ensembl transcript: ENST00000513486
  gene symbol: CPZ
  hgvsc: ENST00000513486.1:n.425G>C
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000155269
  ensembl transcript: ENST00000513120
  gene symbol: GPR78
  hgvsc: ENST00000513120.1:n.3208G>C
  variant of: http://identifiers.org/hgnc/4528
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000354255
  ensembl transcript: ENST00000360986
  gene symbol: CPZ
  hgvsc: ENST00000360986.4:c.1591G>C
  hgvsp: ENSP00000354255.4:p.Asp531His
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000155269
  ensembl protein: ENSP00000424326
  ensembl transcript: ENST00000514302
  gene symbol: GPR78
  hgvsc: ENST00000514302.1:c.*1606G>C
  variant of: http://identifiers.org/hgnc/4528
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000403981
  ensembl transcript: ENST00000429646
  gene symbol: CPZ
  hgvsc: ENST00000429646.2:c.415G>C
  hgvsp: ENSP00000403981.2:p.Asp139His
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000371920
  ensembl transcript: ENST00000382480
  gene symbol: CPZ
  hgvsc: ENST00000382480.2:c.1180G>C
  hgvsp: ENSP00000371920.2:p.Asp394His
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000315074
  ensembl transcript: ENST00000315782
  gene symbol: CPZ
  hgvsc: ENST00000315782.6:c.1558G>C
  hgvsp: ENSP00000315074.6:p.Asp520His
  variant of: http://identifiers.org/hgnc/2333
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8955
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 750
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 684
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1705
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1145
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26907
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2124
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16170
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 767
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2548
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40038
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 288
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 299
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Asp531His
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Other
population: East Asian
reference allele: G
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum

4-8620243-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8620243
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 8620243
    reference: chr 4
allele count: 1
allele frequency: 8.401102224611869e-6
allele num: 119032
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000403981
  ensembl transcript: ENST00000429646
  gene symbol: CPZ
  hgvsc: ENST00000429646.2:c.415G>T
  hgvsp: ENSP00000403981.2:p.Asp139Tyr
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000155269
  ensembl protein: ENSP00000424326
  ensembl transcript: ENST00000514302
  gene symbol: GPR78
  hgvsc: ENST00000514302.1:c.*1606G>T
  variant of: http://identifiers.org/hgnc/4528
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000371920
  ensembl transcript: ENST00000382480
  gene symbol: CPZ
  hgvsc: ENST00000382480.2:c.1180G>T
  hgvsp: ENSP00000371920.2:p.Asp394Tyr
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000109625
  ensembl transcript: ENST00000513486
  gene symbol: CPZ
  hgvsc: ENST00000513486.1:n.425G>T
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000315074
  ensembl transcript: ENST00000315782
  gene symbol: CPZ
  hgvsc: ENST00000315782.6:c.1558G>T
  hgvsp: ENSP00000315074.6:p.Asp520Tyr
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000422693
  ensembl transcript: ENST00000515606
  gene symbol: CPZ
  hgvsc: ENST00000515606.1:c.*1644G>T
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000354255
  ensembl transcript: ENST00000360986
  gene symbol: CPZ
  hgvsc: ENST00000360986.4:c.1591G>T
  hgvsp: ENSP00000354255.4:p.Asp531Tyr
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000155269
  ensembl transcript: ENST00000513120
  gene symbol: GPR78
  hgvsc: ENST00000513120.1:n.3208G>T
  variant of: http://identifiers.org/hgnc/4528
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1705
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 750
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1145
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2124
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16170
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8955
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26907
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 684
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40038
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 299
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 279
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 376
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 341
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Asp531Tyr
num of homozygotes: 0
population: African
population: Other
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Latino
reference allele: G
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum

4-8620245-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8620245
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 8620245
    reference: chr 4
allele count: 1
allele frequency: 8.41283462049703e-6
allele num: 118866
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000403981
  ensembl transcript: ENST00000429646
  gene symbol: CPZ
  hgvsc: ENST00000429646.2:c.417C>T
  hgvsp: ENST00000429646.2:c.417C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000315074
  ensembl transcript: ENST00000315782
  gene symbol: CPZ
  hgvsc: ENST00000315782.6:c.1560C>T
  hgvsp: ENST00000315782.6:c.1560C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000371920
  ensembl transcript: ENST00000382480
  gene symbol: CPZ
  hgvsc: ENST00000382480.2:c.1182C>T
  hgvsp: ENST00000382480.2:c.1182C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000422693
  ensembl transcript: ENST00000515606
  gene symbol: CPZ
  hgvsc: ENST00000515606.1:c.*1646C>T
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000109625
  ensembl transcript: ENST00000513486
  gene symbol: CPZ
  hgvsc: ENST00000513486.1:n.427C>T
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000155269
  ensembl transcript: ENST00000513120
  gene symbol: GPR78
  hgvsc: ENST00000513120.1:n.3210C>T
  variant of: http://identifiers.org/hgnc/4528
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000155269
  ensembl protein: ENSP00000424326
  ensembl transcript: ENST00000514302
  gene symbol: GPR78
  hgvsc: ENST00000514302.1:c.*1608C>T
  variant of: http://identifiers.org/hgnc/4528
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000354255
  ensembl transcript: ENST00000360986
  gene symbol: CPZ
  hgvsc: ENST00000360986.4:c.1593C>T
  hgvsp: ENST00000360986.4:c.1593C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2333
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16037
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1237
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1682
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 823
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8855
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26754
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2372
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2004
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 311
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8519
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 279
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Asp531Asp
num of homozygotes: 0
population: Other
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: African
reference allele: C
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum

4-8620247-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8620247
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 8620247
    reference: chr 4
allele count: 1
allele frequency: 8.445517963616709e-6
allele num: 118406
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000155269
  ensembl transcript: ENST00000513120
  gene symbol: GPR78
  hgvsc: ENST00000513120.1:n.3212T>C
  variant of: http://identifiers.org/hgnc/4528
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000371920
  ensembl transcript: ENST00000382480
  gene symbol: CPZ
  hgvsc: ENST00000382480.2:c.1184T>C
  hgvsp: ENSP00000371920.2:p.Ile395Thr
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000403981
  ensembl transcript: ENST00000429646
  gene symbol: CPZ
  hgvsc: ENST00000429646.2:c.419T>C
  hgvsp: ENSP00000403981.2:p.Ile140Thr
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000155269
  ensembl protein: ENSP00000424326
  ensembl transcript: ENST00000514302
  gene symbol: GPR78
  hgvsc: ENST00000514302.1:c.*1610T>C
  variant of: http://identifiers.org/hgnc/4528
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000422693
  ensembl transcript: ENST00000515606
  gene symbol: CPZ
  hgvsc: ENST00000515606.1:c.*1648T>C
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000354255
  ensembl transcript: ENST00000360986
  gene symbol: CPZ
  hgvsc: ENST00000360986.4:c.1595T>C
  hgvsp: ENSP00000354255.4:p.Ile532Thr
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000109625
  ensembl transcript: ENST00000513486
  gene symbol: CPZ
  hgvsc: ENST00000513486.1:n.429T>C
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000315074
  ensembl transcript: ENST00000315782
  gene symbol: CPZ
  hgvsc: ENST00000315782.6:c.1562T>C
  hgvsp: ENSP00000315074.6:p.Ile521Thr
  variant of: http://identifiers.org/hgnc/2333
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 26346
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 982
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8793
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2889
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1675
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15614
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 680
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1455
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 755
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1900
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1759
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8462
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 338
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ile532Thr
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
population: Other
population: European (Finnish)
reference allele: T
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: ReadPosRankSum

4-8620248-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8620248
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 8620248
    reference: chr 4
allele count: 2
allele frequency: 1.689303331306169e-5
allele num: 118392
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000315074
  ensembl transcript: ENST00000315782
  gene symbol: CPZ
  hgvsc: ENST00000315782.6:c.1563C>T
  hgvsp: ENST00000315782.6:c.1563C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000354255
  ensembl transcript: ENST00000360986
  gene symbol: CPZ
  hgvsc: ENST00000360986.4:c.1596C>T
  hgvsp: ENST00000360986.4:c.1596C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000155269
  ensembl transcript: ENST00000513120
  gene symbol: GPR78
  hgvsc: ENST00000513120.1:n.3213C>T
  variant of: http://identifiers.org/hgnc/4528
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000371920
  ensembl transcript: ENST00000382480
  gene symbol: CPZ
  hgvsc: ENST00000382480.2:c.1185C>T
  hgvsp: ENST00000382480.2:c.1185C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000403981
  ensembl transcript: ENST00000429646
  gene symbol: CPZ
  hgvsc: ENST00000429646.2:c.420C>T
  hgvsp: ENST00000429646.2:c.420C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000109625
  ensembl transcript: ENST00000513486
  gene symbol: CPZ
  hgvsc: ENST00000513486.1:n.430C>T
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000422693
  ensembl transcript: ENST00000515606
  gene symbol: CPZ
  hgvsc: ENST00000515606.1:c.*1649C>T
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000155269
  ensembl protein: ENSP00000424326
  ensembl transcript: ENST00000514302
  gene symbol: GPR78
  hgvsc: ENST00000514302.1:c.*1611C>T
  variant of: http://identifiers.org/hgnc/4528
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8790
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1675
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26346
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 681
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2895
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15607
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1459
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 981
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 357
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 308
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 275
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 692
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 201
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Ile532Ile
num of homozygotes: 0
population: Latino
population: Other
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
reference allele: C
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD

4-8620253-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8620253
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 8620253
    reference: chr 4
allele count: 1
allele frequency: 8.560617734175697e-6
allele num: 116814
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000155269
  ensembl transcript: ENST00000513120
  gene symbol: GPR78
  hgvsc: ENST00000513120.1:n.3218C>G
  variant of: http://identifiers.org/hgnc/4528
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000403981
  ensembl transcript: ENST00000429646
  gene symbol: CPZ
  hgvsc: ENST00000429646.2:c.425C>G
  hgvsp: ENSP00000403981.2:p.Thr142Arg
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000155269
  ensembl protein: ENSP00000424326
  ensembl transcript: ENST00000514302
  gene symbol: GPR78
  hgvsc: ENST00000514302.1:c.*1616C>G
  variant of: http://identifiers.org/hgnc/4528
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000354255
  ensembl transcript: ENST00000360986
  gene symbol: CPZ
  hgvsc: ENST00000360986.4:c.1601C>G
  hgvsp: ENSP00000354255.4:p.Thr534Arg
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000371920
  ensembl transcript: ENST00000382480
  gene symbol: CPZ
  hgvsc: ENST00000382480.2:c.1190C>G
  hgvsp: ENSP00000371920.2:p.Thr397Arg
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000422693
  ensembl transcript: ENST00000515606
  gene symbol: CPZ
  hgvsc: ENST00000515606.1:c.*1654C>G
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000315074
  ensembl transcript: ENST00000315782
  gene symbol: CPZ
  hgvsc: ENST00000315782.6:c.1568C>G
  hgvsp: ENSP00000315074.6:p.Thr523Arg
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000109625
  ensembl transcript: ENST00000513486
  gene symbol: CPZ
  hgvsc: ENST00000513486.1:n.435C>G
  variant of: http://identifiers.org/hgnc/2333
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24793
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 678
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1760
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8325
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14117
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4870
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2215
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1647
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 584
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36153
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Thr534Arg
num of homozygotes: 0
population: Other
population: Latino
population: European (Finnish)
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum

4-8620256-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8620256
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 8620256
    reference: chr 4
allele count: 1
allele frequency: 8.595052687672975e-6
allele num: 116346
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: splice_donor_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000354255
  ensembl transcript: ENST00000360986
  gene symbol: CPZ
  hgvsc: ENST00000360986.4:c.1603+1G>T
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000371920
  ensembl transcript: ENST00000382480
  gene symbol: CPZ
  hgvsc: ENST00000382480.2:c.1192+1G>T
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000422693
  ensembl transcript: ENST00000515606
  gene symbol: CPZ
  hgvsc: ENST00000515606.1:c.*1656+1G>T
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000315074
  ensembl transcript: ENST00000315782
  gene symbol: CPZ
  hgvsc: ENST00000315782.6:c.1570+1G>T
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000109625
  ensembl transcript: ENST00000513486
  gene symbol: CPZ
  hgvsc: ENST00000513486.1:n.437+1G>T
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000403981
  ensembl transcript: ENST00000429646
  gene symbol: CPZ
  hgvsc: ENST00000429646.2:c.427+1G>T
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000155269
  ensembl protein: ENSP00000424326
  ensembl transcript: ENST00000514302
  gene symbol: GPR78
  hgvsc: ENST00000514302.1:c.*1618+1G>T
  variant of: http://identifiers.org/hgnc/4528
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000155269
  ensembl transcript: ENST00000513120
  gene symbol: GPR78
  hgvsc: ENST00000513120.1:n.3220+1G>T
  variant of: http://identifiers.org/hgnc/4528
canonical: true
consequence: splice donor
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24187
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2030
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 671
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1615
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5491
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2436
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13912
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8056
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1330
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6526
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 321
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35731
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1671
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 364
  bin: 5.25e1
  variant carriers: 0
hgvs: c.1603+1G>T
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: DP

4-8620263-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8620263
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 8620263
    reference: chr 4
allele count: 3
allele frequency: 2.62821299038074e-5
allele num: 114146
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000371920
  ensembl transcript: ENST00000382480
  gene symbol: CPZ
  hgvsc: ENST00000382480.2:c.1192+8C>T
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000354255
  ensembl transcript: ENST00000360986
  gene symbol: CPZ
  hgvsc: ENST00000360986.4:c.1603+8C>T
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000315074
  ensembl transcript: ENST00000315782
  gene symbol: CPZ
  hgvsc: ENST00000315782.6:c.1570+8C>T
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000155269
  ensembl protein: ENSP00000424326
  ensembl transcript: ENST00000514302
  gene symbol: GPR78
  hgvsc: ENST00000514302.1:c.*1618+8C>T
  variant of: http://identifiers.org/hgnc/4528
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000422693
  ensembl transcript: ENST00000515606
  gene symbol: CPZ
  hgvsc: ENST00000515606.1:c.*1656+8C>T
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109625
  ensembl transcript: ENST00000513486
  gene symbol: CPZ
  hgvsc: ENST00000513486.1:n.437+8C>T
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000403981
  ensembl transcript: ENST00000429646
  gene symbol: CPZ
  hgvsc: ENST00000429646.2:c.427+8C>T
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000155269
  ensembl transcript: ENST00000513120
  gene symbol: GPR78
  hgvsc: ENST00000513120.1:n.3220+8C>T
  variant of: http://identifiers.org/hgnc/4528
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3393
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1494
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8947
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3501
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20722
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 659
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12729
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6897
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1126
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 328
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1462
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10350
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 443
  bin: 5.25e1
  variant carriers: 0
hgvs: c.1603+8C>T
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: East Asian
population: Latino
population: Other
reference allele: C
site quality: MQ
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum

4-8620264-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8620264
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 8620264
    reference: chr 4
allele count: 27
allele frequency: 2.39141217317367e-4
allele num: 112904
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000354255
  ensembl transcript: ENST00000360986
  gene symbol: CPZ
  hgvsc: ENST00000360986.4:c.1603+9G>A
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000315074
  ensembl transcript: ENST00000315782
  gene symbol: CPZ
  hgvsc: ENST00000315782.6:c.1570+9G>A
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000422693
  ensembl transcript: ENST00000515606
  gene symbol: CPZ
  hgvsc: ENST00000515606.1:c.*1656+9G>A
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000371920
  ensembl transcript: ENST00000382480
  gene symbol: CPZ
  hgvsc: ENST00000382480.2:c.1192+9G>A
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000155269
  ensembl protein: ENSP00000424326
  ensembl transcript: ENST00000514302
  gene symbol: GPR78
  hgvsc: ENST00000514302.1:c.*1618+9G>A
  variant of: http://identifiers.org/hgnc/4528
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109625
  ensembl transcript: ENST00000513486
  gene symbol: CPZ
  hgvsc: ENST00000513486.1:n.437+9G>A
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000155269
  ensembl transcript: ENST00000513120
  gene symbol: GPR78
  hgvsc: ENST00000513120.1:n.3220+9G>A
  variant of: http://identifiers.org/hgnc/4528
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000403981
  ensembl transcript: ENST00000429646
  gene symbol: CPZ
  hgvsc: ENST00000429646.2:c.427+9G>A
  variant of: http://identifiers.org/hgnc/2333
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12210
  bin: 2.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 4.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4566
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5831
  bin: 3.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 11380
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 625
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1325
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3846
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18485
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 179
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 463
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1539
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1134
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25531
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1226
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
population: Other
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQ

4-8620268-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8620268
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 8620268
    reference: chr 4
allele count: 1
allele frequency: 8.877368037924116e-6
allele num: 112646
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000371920
  ensembl transcript: ENST00000382480
  gene symbol: CPZ
  hgvsc: ENST00000382480.2:c.1192+13C>T
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109625
  ensembl transcript: ENST00000513486
  gene symbol: CPZ
  hgvsc: ENST00000513486.1:n.437+13C>T
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000155269
  ensembl protein: ENSP00000424326
  ensembl transcript: ENST00000514302
  gene symbol: GPR78
  hgvsc: ENST00000514302.1:c.*1618+13C>T
  variant of: http://identifiers.org/hgnc/4528
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000422693
  ensembl transcript: ENST00000515606
  gene symbol: CPZ
  hgvsc: ENST00000515606.1:c.*1656+13C>T
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000403981
  ensembl transcript: ENST00000429646
  gene symbol: CPZ
  hgvsc: ENST00000429646.2:c.427+13C>T
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000354255
  ensembl transcript: ENST00000360986
  gene symbol: CPZ
  hgvsc: ENST00000360986.4:c.1603+13C>T
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000315074
  ensembl transcript: ENST00000315782
  gene symbol: CPZ
  hgvsc: ENST00000315782.6:c.1570+13C>T
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000155269
  ensembl transcript: ENST00000513120
  gene symbol: GPR78
  hgvsc: ENST00000513120.1:n.3220+13C>T
  variant of: http://identifiers.org/hgnc/4528
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5447
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12770
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4410
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18330
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1271
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11484
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3951
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 602
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 248
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3082
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 695
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3001
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4999
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 460
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: European (Finnish)
population: Other
population: African
reference allele: C
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum

4-8620270-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8620270
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 8620270
    reference: chr 4
allele count: 1
allele frequency: 8.900915014063446e-6
allele num: 112348
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000422693
  ensembl transcript: ENST00000515606
  gene symbol: CPZ
  hgvsc: ENST00000515606.1:c.*1656+15G>T
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000403981
  ensembl transcript: ENST00000429646
  gene symbol: CPZ
  hgvsc: ENST00000429646.2:c.427+15G>T
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000315074
  ensembl transcript: ENST00000315782
  gene symbol: CPZ
  hgvsc: ENST00000315782.6:c.1570+15G>T
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000354255
  ensembl transcript: ENST00000360986
  gene symbol: CPZ
  hgvsc: ENST00000360986.4:c.1603+15G>T
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000371920
  ensembl transcript: ENST00000382480
  gene symbol: CPZ
  hgvsc: ENST00000382480.2:c.1192+15G>T
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109625
  ensembl transcript: ENST00000513486
  gene symbol: CPZ
  hgvsc: ENST00000513486.1:n.437+15G>T
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000155269
  ensembl transcript: ENST00000513120
  gene symbol: GPR78
  hgvsc: ENST00000513120.1:n.3220+15G>T
  variant of: http://identifiers.org/hgnc/4528
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000155269
  ensembl protein: ENSP00000424326
  ensembl transcript: ENST00000514302
  gene symbol: GPR78
  hgvsc: ENST00000514302.1:c.*1618+15G>T
  variant of: http://identifiers.org/hgnc/4528
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17877
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5240
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11961
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4539
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4084
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1230
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12732
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4926
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1202
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 602
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13087
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3136
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 205
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 401
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: Other
population: South Asian
population: East Asian
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: MQ

4-8620272-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8620272
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 8620272
    reference: chr 4
allele count: 1
allele frequency: 8.971828458639871e-6
allele num: 111460
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000155269
  ensembl transcript: ENST00000513120
  gene symbol: GPR78
  hgvsc: ENST00000513120.1:n.3220+17C>G
  variant of: http://identifiers.org/hgnc/4528
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000354255
  ensembl transcript: ENST00000360986
  gene symbol: CPZ
  hgvsc: ENST00000360986.4:c.1603+17C>G
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000403981
  ensembl transcript: ENST00000429646
  gene symbol: CPZ
  hgvsc: ENST00000429646.2:c.427+17C>G
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000315074
  ensembl transcript: ENST00000315782
  gene symbol: CPZ
  hgvsc: ENST00000315782.6:c.1570+17C>G
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000422693
  ensembl transcript: ENST00000515606
  gene symbol: CPZ
  hgvsc: ENST00000515606.1:c.*1656+17C>G
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000371920
  ensembl transcript: ENST00000382480
  gene symbol: CPZ
  hgvsc: ENST00000382480.2:c.1192+17C>G
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000155269
  ensembl protein: ENSP00000424326
  ensembl transcript: ENST00000514302
  gene symbol: GPR78
  hgvsc: ENST00000514302.1:c.*1618+17C>G
  variant of: http://identifiers.org/hgnc/4528
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109625
  ensembl transcript: ENST00000513486
  gene symbol: CPZ
  hgvsc: ENST00000513486.1:n.437+17C>G
  variant of: http://identifiers.org/hgnc/2333
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16633
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13359
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4301
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1186
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5157
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4864
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12118
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1866
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 566
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 469
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 466
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3750
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3499
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1977
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Latino
population: African
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP

4-8620272-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8620272
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 8620272
    reference: chr 4
allele count: 1
allele frequency: 8.971828458639871e-6
allele num: 111460
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109625
  ensembl transcript: ENST00000513486
  gene symbol: CPZ
  hgvsc: ENST00000513486.1:n.437+17C>T
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000403981
  ensembl transcript: ENST00000429646
  gene symbol: CPZ
  hgvsc: ENST00000429646.2:c.427+17C>T
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000155269
  ensembl transcript: ENST00000513120
  gene symbol: GPR78
  hgvsc: ENST00000513120.1:n.3220+17C>T
  variant of: http://identifiers.org/hgnc/4528
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000354255
  ensembl transcript: ENST00000360986
  gene symbol: CPZ
  hgvsc: ENST00000360986.4:c.1603+17C>T
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000422693
  ensembl transcript: ENST00000515606
  gene symbol: CPZ
  hgvsc: ENST00000515606.1:c.*1656+17C>T
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000315074
  ensembl transcript: ENST00000315782
  gene symbol: CPZ
  hgvsc: ENST00000315782.6:c.1570+17C>T
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000155269
  ensembl protein: ENSP00000424326
  ensembl transcript: ENST00000514302
  gene symbol: GPR78
  hgvsc: ENST00000514302.1:c.*1618+17C>T
  variant of: http://identifiers.org/hgnc/4528
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000371920
  ensembl transcript: ENST00000382480
  gene symbol: CPZ
  hgvsc: ENST00000382480.2:c.1192+17C>T
  variant of: http://identifiers.org/hgnc/2333
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12118
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5157
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4864
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1186
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4301
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13359
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16633
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 290
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 566
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 469
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1977
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3750
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14063
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 167
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: South Asian
population: Other
population: Latino
population: East Asian
population: European (Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD

4-8620274-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8620274
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 8620274
    reference: chr 4
allele count: 11
allele frequency: 1.001584324294794e-4
allele num: 109826
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000354255
  ensembl transcript: ENST00000360986
  gene symbol: CPZ
  hgvsc: ENST00000360986.4:c.1603+19G>T
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000155269
  ensembl transcript: ENST00000513120
  gene symbol: GPR78
  hgvsc: ENST00000513120.1:n.3220+19G>T
  variant of: http://identifiers.org/hgnc/4528
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000422693
  ensembl transcript: ENST00000515606
  gene symbol: CPZ
  hgvsc: ENST00000515606.1:c.*1656+19G>T
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000371920
  ensembl transcript: ENST00000382480
  gene symbol: CPZ
  hgvsc: ENST00000382480.2:c.1192+19G>T
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109625
  ensembl transcript: ENST00000513486
  gene symbol: CPZ
  hgvsc: ENST00000513486.1:n.437+19G>T
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000315074
  ensembl transcript: ENST00000315782
  gene symbol: CPZ
  hgvsc: ENST00000315782.6:c.1570+19G>T
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000403981
  ensembl transcript: ENST00000429646
  gene symbol: CPZ
  hgvsc: ENST00000429646.2:c.427+19G>T
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000155269
  ensembl protein: ENSP00000424326
  ensembl transcript: ENST00000514302
  gene symbol: GPR78
  hgvsc: ENST00000514302.1:c.*1618+19G>T
  variant of: http://identifiers.org/hgnc/4528
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11204
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 554
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1120
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4567
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15186
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14864
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4529
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6048
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 401
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 675
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4265
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3882
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 817
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1037
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2278
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Latino
population: Other
population: East Asian
population: European (Non-Finnish)
population: African
reference allele: G
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ

4-8620275-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8620275
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 8620275
    reference: chr 4
allele count: 92
allele frequency: 8.37185600407673e-4
allele num: 109892
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000371920
  ensembl transcript: ENST00000382480
  gene symbol: CPZ
  hgvsc: ENST00000382480.2:c.1192+20T>G
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000155269
  ensembl transcript: ENST00000513120
  gene symbol: GPR78
  hgvsc: ENST00000513120.1:n.3220+20T>G
  variant of: http://identifiers.org/hgnc/4528
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000315074
  ensembl transcript: ENST00000315782
  gene symbol: CPZ
  hgvsc: ENST00000315782.6:c.1570+20T>G
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000354255
  ensembl transcript: ENST00000360986
  gene symbol: CPZ
  hgvsc: ENST00000360986.4:c.1603+20T>G
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000403981
  ensembl transcript: ENST00000429646
  gene symbol: CPZ
  hgvsc: ENST00000429646.2:c.427+20T>G
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000155269
  ensembl protein: ENSP00000424326
  ensembl transcript: ENST00000514302
  gene symbol: GPR78
  hgvsc: ENST00000514302.1:c.*1618+20T>G
  variant of: http://identifiers.org/hgnc/4528
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000422693
  ensembl transcript: ENST00000515606
  gene symbol: CPZ
  hgvsc: ENST00000515606.1:c.*1656+20T>G
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109625
  ensembl transcript: ENST00000513486
  gene symbol: CPZ
  hgvsc: ENST00000513486.1:n.437+20T>G
  variant of: http://identifiers.org/hgnc/2333
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 558
  bin: 4.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 4573
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15155
  bin: 2.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11247
  bin: 2.25e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 14946
  bin: 1.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1114
  bin: 3.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 5.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 4480
  bin: 3.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 5986
  bin: 1.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2242
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4370
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 329
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 241
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 303
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 557
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2056
  bin: 9.75e1
  variant carriers: 87
num of homozygotes: 2
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
population: European (Finnish)
population: African
population: South Asian
reference allele: T
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum

4-8620276-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8620276
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 8620276
    reference: chr 4
allele count: 1
allele frequency: 9.215230933687198e-6
allele num: 108516
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109625
  ensembl transcript: ENST00000513486
  gene symbol: CPZ
  hgvsc: ENST00000513486.1:n.437+21C>T
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000315074
  ensembl transcript: ENST00000315782
  gene symbol: CPZ
  hgvsc: ENST00000315782.6:c.1570+21C>T
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000155269
  ensembl transcript: ENST00000513120
  gene symbol: GPR78
  hgvsc: ENST00000513120.1:n.3220+21C>T
  variant of: http://identifiers.org/hgnc/4528
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000371920
  ensembl transcript: ENST00000382480
  gene symbol: CPZ
  hgvsc: ENST00000382480.2:c.1192+21C>T
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000354255
  ensembl transcript: ENST00000360986
  gene symbol: CPZ
  hgvsc: ENST00000360986.4:c.1603+21C>T
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000403981
  ensembl transcript: ENST00000429646
  gene symbol: CPZ
  hgvsc: ENST00000429646.2:c.427+21C>T
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000422693
  ensembl transcript: ENST00000515606
  gene symbol: CPZ
  hgvsc: ENST00000515606.1:c.*1656+21C>T
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000155269
  ensembl protein: ENSP00000424326
  ensembl transcript: ENST00000514302
  gene symbol: GPR78
  hgvsc: ENST00000514302.1:c.*1618+21C>T
  variant of: http://identifiers.org/hgnc/4528
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4695
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15925
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1101
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14116
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6719
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4288
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10379
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 547
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4802
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 720
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 823
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15202
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 647
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20054
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3956
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: South Asian
population: Latino
population: East Asian
population: European (Finnish)
population: African
reference allele: C
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD

4-8620277-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8620277
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 8620277
    reference: chr 4
allele count: 1
allele frequency: 9.215230933687198e-6
allele num: 108516
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000422693
  ensembl transcript: ENST00000515606
  gene symbol: CPZ
  hgvsc: ENST00000515606.1:c.*1656+22C>T
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000155269
  ensembl protein: ENSP00000424326
  ensembl transcript: ENST00000514302
  gene symbol: GPR78
  hgvsc: ENST00000514302.1:c.*1618+22C>T
  variant of: http://identifiers.org/hgnc/4528
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000155269
  ensembl transcript: ENST00000513120
  gene symbol: GPR78
  hgvsc: ENST00000513120.1:n.3220+22C>T
  variant of: http://identifiers.org/hgnc/4528
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000315074
  ensembl transcript: ENST00000315782
  gene symbol: CPZ
  hgvsc: ENST00000315782.6:c.1570+22C>T
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000403981
  ensembl transcript: ENST00000429646
  gene symbol: CPZ
  hgvsc: ENST00000429646.2:c.427+22C>T
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000354255
  ensembl transcript: ENST00000360986
  gene symbol: CPZ
  hgvsc: ENST00000360986.4:c.1603+22C>T
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000371920
  ensembl transcript: ENST00000382480
  gene symbol: CPZ
  hgvsc: ENST00000382480.2:c.1192+22C>T
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109625
  ensembl transcript: ENST00000513486
  gene symbol: CPZ
  hgvsc: ENST00000513486.1:n.437+22C>T
  variant of: http://identifiers.org/hgnc/2333
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14114
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6652
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4245
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15959
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4727
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10426
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1096
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 544
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 240
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3924
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 833
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 544
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 301
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4780
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 717
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: South Asian
population: African
population: European (Finnish)
population: Latino
population: East Asian
reference allele: C
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: QD

4-8620280-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8620280
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 8620280
    reference: chr 4
allele count: 1
allele frequency: 9.321575719159567e-6
allele num: 107278
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000155269
  ensembl transcript: ENST00000513120
  gene symbol: GPR78
  hgvsc: ENST00000513120.1:n.3220+25T>G
  variant of: http://identifiers.org/hgnc/4528
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000315074
  ensembl transcript: ENST00000315782
  gene symbol: CPZ
  hgvsc: ENST00000315782.6:c.1570+25T>G
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000422693
  ensembl transcript: ENST00000515606
  gene symbol: CPZ
  hgvsc: ENST00000515606.1:c.*1656+25T>G
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000371920
  ensembl transcript: ENST00000382480
  gene symbol: CPZ
  hgvsc: ENST00000382480.2:c.1192+25T>G
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000155269
  ensembl protein: ENSP00000424326
  ensembl transcript: ENST00000514302
  gene symbol: GPR78
  hgvsc: ENST00000514302.1:c.*1618+25T>G
  variant of: http://identifiers.org/hgnc/4528
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000403981
  ensembl transcript: ENST00000429646
  gene symbol: CPZ
  hgvsc: ENST00000429646.2:c.427+25T>G
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109625
  ensembl transcript: ENST00000513486
  gene symbol: CPZ
  hgvsc: ENST00000513486.1:n.437+25T>G
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000354255
  ensembl transcript: ENST00000360986
  gene symbol: CPZ
  hgvsc: ENST00000360986.4:c.1603+25T>G
  variant of: http://identifiers.org/hgnc/2333
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7995
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12532
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17166
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3851
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1071
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4946
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9512
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 556
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 931
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15989
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2914
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4517
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 800
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 637
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 626
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 192
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
reference allele: T
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum

4-8620283-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8620283
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 8620283
    reference: chr 4
allele count: 2
allele frequency: 1.877546422335292e-5
allele num: 106522
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109625
  ensembl transcript: ENST00000513486
  gene symbol: CPZ
  hgvsc: ENST00000513486.1:n.437+28G>A
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000155269
  ensembl transcript: ENST00000513120
  gene symbol: GPR78
  hgvsc: ENST00000513120.1:n.3220+28G>A
  variant of: http://identifiers.org/hgnc/4528
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000403981
  ensembl transcript: ENST00000429646
  gene symbol: CPZ
  hgvsc: ENST00000429646.2:c.427+28G>A
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000422693
  ensembl transcript: ENST00000515606
  gene symbol: CPZ
  hgvsc: ENST00000515606.1:c.*1656+28G>A
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000155269
  ensembl protein: ENSP00000424326
  ensembl transcript: ENST00000514302
  gene symbol: GPR78
  hgvsc: ENST00000514302.1:c.*1618+28G>A
  variant of: http://identifiers.org/hgnc/4528
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000354255
  ensembl transcript: ENST00000360986
  gene symbol: CPZ
  hgvsc: ENST00000360986.4:c.1603+28G>A
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000315074
  ensembl transcript: ENST00000315782
  gene symbol: CPZ
  hgvsc: ENST00000315782.6:c.1570+28G>A
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000371920
  ensembl transcript: ENST00000382480
  gene symbol: CPZ
  hgvsc: ENST00000382480.2:c.1192+28G>A
  variant of: http://identifiers.org/hgnc/2333
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5209
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9222
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1036
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17819
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8943
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11257
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3469
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16437
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 837
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 302
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3232
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6087
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1967
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 192
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1161
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: South Asian
population: European (Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: QD

4-8620283-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8620283
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 8620283
    reference: chr 4
allele count: 1
allele frequency: 9.387732111676462e-6
allele num: 106522
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000155269
  ensembl transcript: ENST00000513120
  gene symbol: GPR78
  hgvsc: ENST00000513120.1:n.3220+28G>C
  variant of: http://identifiers.org/hgnc/4528
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109625
  ensembl transcript: ENST00000513486
  gene symbol: CPZ
  hgvsc: ENST00000513486.1:n.437+28G>C
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000422693
  ensembl transcript: ENST00000515606
  gene symbol: CPZ
  hgvsc: ENST00000515606.1:c.*1656+28G>C
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000371920
  ensembl transcript: ENST00000382480
  gene symbol: CPZ
  hgvsc: ENST00000382480.2:c.1192+28G>C
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000315074
  ensembl transcript: ENST00000315782
  gene symbol: CPZ
  hgvsc: ENST00000315782.6:c.1570+28G>C
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000403981
  ensembl transcript: ENST00000429646
  gene symbol: CPZ
  hgvsc: ENST00000429646.2:c.427+28G>C
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000354255
  ensembl transcript: ENST00000360986
  gene symbol: CPZ
  hgvsc: ENST00000360986.4:c.1603+28G>C
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000155269
  ensembl protein: ENSP00000424326
  ensembl transcript: ENST00000514302
  gene symbol: GPR78
  hgvsc: ENST00000514302.1:c.*1618+28G>C
  variant of: http://identifiers.org/hgnc/4528
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11257
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1036
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17819
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9222
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8943
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5209
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3469
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1161
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16437
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 533
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6087
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 837
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1967
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 886
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 302
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: East Asian
population: African
population: South Asian
reference allele: G
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ

4-8620284-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8620284
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 8620284
    reference: chr 4
allele count: 1
allele frequency: 9.271105672062449e-6
allele num: 107862
alternate allele: A
canonical: false
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9955
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1005
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5469
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 761
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18311
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8465
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10709
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3195
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 300
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 869
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 565
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5239
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 15769
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14272
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6152
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 722
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 222
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 641
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 924
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1086
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4868
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2934
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 368
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 764
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 254
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 512
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3399
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 823
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 59326
  num of homozygotes: 0
population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 9092
  num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 5830
  num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 15314
  num of homozygotes: 0
population: East Asian
population: Latino
population: Other
reference allele: G
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum

4-8620284-G-GA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8620284
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 8620285
    reference: chr 4
allele count: 2
allele frequency: 1.85422113441249e-5
allele num: 107862
alternate allele: GA
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000354255
  ensembl transcript: ENST00000360986
  gene symbol: CPZ
  hgvsc: ENST00000360986.4:c.1603+30dupA
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109625
  ensembl transcript: ENST00000513486
  gene symbol: CPZ
  hgvsc: ENST00000513486.1:n.437+30dupA
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000422693
  ensembl transcript: ENST00000515606
  gene symbol: CPZ
  hgvsc: ENST00000515606.1:c.*1656+30dupA
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000315074
  ensembl transcript: ENST00000315782
  gene symbol: CPZ
  hgvsc: ENST00000315782.6:c.1570+30dupA
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000155269
  ensembl protein: ENSP00000424326
  ensembl transcript: ENST00000514302
  gene symbol: GPR78
  hgvsc: ENST00000514302.1:c.*1618+30dupA
  variant of: http://identifiers.org/hgnc/4528
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000371920
  ensembl transcript: ENST00000382480
  gene symbol: CPZ
  hgvsc: ENST00000382480.2:c.1192+30dupA
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000403981
  ensembl transcript: ENST00000429646
  gene symbol: CPZ
  hgvsc: ENST00000429646.2:c.427+30dupA
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000155269
  ensembl transcript: ENST00000513120
  gene symbol: GPR78
  hgvsc: ENST00000513120.1:n.3220+30dupA
  variant of: http://identifiers.org/hgnc/4528
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8465
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10709
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18311
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 761
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5469
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9955
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1005
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3195
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4868
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6152
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1086
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 565
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 368
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15769
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3399
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2934
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: QD

4-8620284-GACC-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8620284
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 8620281
    reference: chr 4
allele count: 3762
allele frequency: 3.487789953829894e-2
allele num: 107862
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000155269
  ensembl transcript: ENST00000513120
  gene symbol: GPR78
  hgvsc: ENST00000513120.1:n.3220+32_3220+34delCAC
  variant of: http://identifiers.org/hgnc/4528
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000422693
  ensembl transcript: ENST00000515606
  gene symbol: CPZ
  hgvsc: ENST00000515606.1:c.*1656+32_*1656+34delCAC
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000155269
  ensembl protein: ENSP00000424326
  ensembl transcript: ENST00000514302
  gene symbol: GPR78
  hgvsc: ENST00000514302.1:c.*1618+32_*1618+34delCAC
  variant of: http://identifiers.org/hgnc/4528
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000315074
  ensembl transcript: ENST00000315782
  gene symbol: CPZ
  hgvsc: ENST00000315782.6:c.1570+32_1570+34delCAC
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000403981
  ensembl transcript: ENST00000429646
  gene symbol: CPZ
  hgvsc: ENST00000429646.2:c.427+32_427+34delCAC
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000371920
  ensembl transcript: ENST00000382480
  gene symbol: CPZ
  hgvsc: ENST00000382480.2:c.1192+32_1192+34delCAC
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000354255
  ensembl transcript: ENST00000360986
  gene symbol: CPZ
  hgvsc: ENST00000360986.4:c.1603+32_1603+34delCAC
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109625
  ensembl transcript: ENST00000513486
  gene symbol: CPZ
  hgvsc: ENST00000513486.1:n.437+32_437+34delCAC
  variant of: http://identifiers.org/hgnc/2333
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8465
  bin: 2.25e1
  variant carriers: 795
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 9.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 5469
  bin: 7.5e0
  variant carriers: 191
genotype depth: GenotypeDepth
  all individuals: 3195
  bin: 3.25e1
  variant carriers: 211
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 8.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 10709
  bin: 1.75e1
  variant carriers: 981
genotype depth: GenotypeDepth
  all individuals: 18311
  bin: 1.25e1
  variant carriers: 677
genotype depth: GenotypeDepth
  all individuals: 9955
  bin: 2.75e1
  variant carriers: 429
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 6.25e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 5.25e1
  variant carriers: 42
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 8.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.75e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 761
  bin: 2.5e0
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 4.75e1
  variant carriers: 58
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 5.75e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 4.25e1
  variant carriers: 85
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 7.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 1005
  bin: 3.75e1
  variant carriers: 120
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 9.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 6.75e1
  variant carriers: 19
genotype quality: GenotypeQuality
  all individuals: 823
  bin: 7.25e1
  variant carriers: 25
genotype quality: GenotypeQuality
  all individuals: 924
  bin: 4.25e1
  variant carriers: 29
genotype quality: GenotypeQuality
  all individuals: 4868
  bin: 2.75e1
  variant carriers: 15
genotype quality: GenotypeQuality
  all individuals: 3399
  bin: 3.75e1
  variant carriers: 26
genotype quality: GenotypeQuality
  all individuals: 512
  bin: 8.25e1
  variant carriers: 17
genotype quality: GenotypeQuality
  all individuals: 722
  bin: 5.25e1
  variant carriers: 34
genotype quality: GenotypeQuality
  all individuals: 300
  bin: 9.25e1
  variant carriers: 23
genotype quality: GenotypeQuality
  all individuals: 368
  bin: 1.25e1
  variant carriers: 9
num of homozygotes: 267
population: South Asian
population: East Asian
population: African
population: European (Finnish)
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: GACC
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: ClippingRankSum

4-8620287-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8620287
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 8620287
    reference: chr 4
allele count: 1
allele frequency: 1.000960922485586e-5
allele num: 99904
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000422693
  ensembl transcript: ENST00000515606
  gene symbol: CPZ
  hgvsc: ENST00000515606.1:c.*1656+32C>G
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000354255
  ensembl transcript: ENST00000360986
  gene symbol: CPZ
  hgvsc: ENST00000360986.4:c.1603+32C>G
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000403981
  ensembl transcript: ENST00000429646
  gene symbol: CPZ
  hgvsc: ENST00000429646.2:c.427+32C>G
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000315074
  ensembl transcript: ENST00000315782
  gene symbol: CPZ
  hgvsc: ENST00000315782.6:c.1570+32C>G
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000371920
  ensembl transcript: ENST00000382480
  gene symbol: CPZ
  hgvsc: ENST00000382480.2:c.1192+32C>G
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000155269
  ensembl transcript: ENST00000513120
  gene symbol: GPR78
  hgvsc: ENST00000513120.1:n.3220+32C>G
  variant of: http://identifiers.org/hgnc/4528
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000155269
  ensembl protein: ENSP00000424326
  ensembl transcript: ENST00000514302
  gene symbol: GPR78
  hgvsc: ENST00000514302.1:c.*1618+32C>G
  variant of: http://identifiers.org/hgnc/4528
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109625
  ensembl transcript: ENST00000513486
  gene symbol: CPZ
  hgvsc: ENST00000513486.1:n.437+32C>G
  variant of: http://identifiers.org/hgnc/2333
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2712
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7456
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 872
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 835
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17657
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8553
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5571
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10812
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 277
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 996
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2637
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1907
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 724
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 260
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6538
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3664
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
population: Other
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum

4-8620287-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8620287
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 8620287
    reference: chr 4
allele count: 1
allele frequency: 1.000960922485586e-5
allele num: 99904
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109625
  ensembl transcript: ENST00000513486
  gene symbol: CPZ
  hgvsc: ENST00000513486.1:n.437+32C>T
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000354255
  ensembl transcript: ENST00000360986
  gene symbol: CPZ
  hgvsc: ENST00000360986.4:c.1603+32C>T
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000315074
  ensembl transcript: ENST00000315782
  gene symbol: CPZ
  hgvsc: ENST00000315782.6:c.1570+32C>T
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000155269
  ensembl transcript: ENST00000513120
  gene symbol: GPR78
  hgvsc: ENST00000513120.1:n.3220+32C>T
  variant of: http://identifiers.org/hgnc/4528
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000422693
  ensembl transcript: ENST00000515606
  gene symbol: CPZ
  hgvsc: ENST00000515606.1:c.*1656+32C>T
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000403981
  ensembl transcript: ENST00000429646
  gene symbol: CPZ
  hgvsc: ENST00000429646.2:c.427+32C>T
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000371920
  ensembl transcript: ENST00000382480
  gene symbol: CPZ
  hgvsc: ENST00000382480.2:c.1192+32C>T
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000155269
  ensembl protein: ENSP00000424326
  ensembl transcript: ENST00000514302
  gene symbol: GPR78
  hgvsc: ENST00000514302.1:c.*1618+32C>T
  variant of: http://identifiers.org/hgnc/4528
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2712
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10812
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5571
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8553
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7456
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 835
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17657
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 872
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 277
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 724
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 823
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4995
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 755
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2637
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15861
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 489
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: C
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: QD

4-8620289-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8620289
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 8620289
    reference: chr 4
allele count: 1
allele frequency: 9.407868741415319e-6
allele num: 106294
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000155269
  ensembl protein: ENSP00000424326
  ensembl transcript: ENST00000514302
  gene symbol: GPR78
  hgvsc: ENST00000514302.1:c.*1618+34C>T
  variant of: http://identifiers.org/hgnc/4528
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000371920
  ensembl transcript: ENST00000382480
  gene symbol: CPZ
  hgvsc: ENST00000382480.2:c.1192+34C>T
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000403981
  ensembl transcript: ENST00000429646
  gene symbol: CPZ
  hgvsc: ENST00000429646.2:c.427+34C>T
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109625
  ensembl transcript: ENST00000513486
  gene symbol: CPZ
  hgvsc: ENST00000513486.1:n.437+34C>T
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000354255
  ensembl transcript: ENST00000360986
  gene symbol: CPZ
  hgvsc: ENST00000360986.4:c.1603+34C>T
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000315074
  ensembl transcript: ENST00000315782
  gene symbol: CPZ
  hgvsc: ENST00000315782.6:c.1570+34C>T
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000422693
  ensembl transcript: ENST00000515606
  gene symbol: CPZ
  hgvsc: ENST00000515606.1:c.*1656+34C>T
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000155269
  ensembl transcript: ENST00000513120
  gene symbol: GPR78
  hgvsc: ENST00000513120.1:n.3220+34C>T
  variant of: http://identifiers.org/hgnc/4528
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6092
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 927
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18878
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8604
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 940
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2767
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11877
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7902
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1088
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 527
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 412
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1370
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 665
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17032
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 855
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7172
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: South Asian
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum

4-8620290-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8620290
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 8620290
    reference: chr 4
allele count: 1
allele frequency: 9.534342702414095e-6
allele num: 104884
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000422693
  ensembl transcript: ENST00000515606
  gene symbol: CPZ
  hgvsc: ENST00000515606.1:c.*1656+35G>A
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000371920
  ensembl transcript: ENST00000382480
  gene symbol: CPZ
  hgvsc: ENST00000382480.2:c.1192+35G>A
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000155269
  ensembl transcript: ENST00000513120
  gene symbol: GPR78
  hgvsc: ENST00000513120.1:n.3220+35G>A
  variant of: http://identifiers.org/hgnc/4528
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000403981
  ensembl transcript: ENST00000429646
  gene symbol: CPZ
  hgvsc: ENST00000429646.2:c.427+35G>A
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000315074
  ensembl transcript: ENST00000315782
  gene symbol: CPZ
  hgvsc: ENST00000315782.6:c.1570+35G>A
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109625
  ensembl transcript: ENST00000513486
  gene symbol: CPZ
  hgvsc: ENST00000513486.1:n.437+35G>A
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000354255
  ensembl transcript: ENST00000360986
  gene symbol: CPZ
  hgvsc: ENST00000360986.4:c.1603+35G>A
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000155269
  ensembl protein: ENSP00000424326
  ensembl transcript: ENST00000514302
  gene symbol: GPR78
  hgvsc: ENST00000514302.1:c.*1618+35G>A
  variant of: http://identifiers.org/hgnc/4528
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7914
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2607
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7719
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6340
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 981
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 927
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12671
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18834
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4256
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 438
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 746
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1149
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 621
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 953
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2586
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1554
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ

4-8620295-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8620295
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 8620295
    reference: chr 4
allele count: 1
allele frequency: 9.553105714667839e-6
allele num: 104678
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000422693
  ensembl transcript: ENST00000515606
  gene symbol: CPZ
  hgvsc: ENST00000515606.1:c.*1656+40C>T
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000371920
  ensembl transcript: ENST00000382480
  gene symbol: CPZ
  hgvsc: ENST00000382480.2:c.1192+40C>T
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000155269
  ensembl transcript: ENST00000513120
  gene symbol: GPR78
  hgvsc: ENST00000513120.1:n.3220+40C>T
  variant of: http://identifiers.org/hgnc/4528
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000354255
  ensembl transcript: ENST00000360986
  gene symbol: CPZ
  hgvsc: ENST00000360986.4:c.1603+40C>T
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000403981
  ensembl transcript: ENST00000429646
  gene symbol: CPZ
  hgvsc: ENST00000429646.2:c.427+40C>T
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000155269
  ensembl protein: ENSP00000424326
  ensembl transcript: ENST00000514302
  gene symbol: GPR78
  hgvsc: ENST00000514302.1:c.*1618+40C>T
  variant of: http://identifiers.org/hgnc/4528
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000315074
  ensembl transcript: ENST00000315782
  gene symbol: CPZ
  hgvsc: ENST00000315782.6:c.1570+40C>T
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109625
  ensembl transcript: ENST00000513486
  gene symbol: CPZ
  hgvsc: ENST00000513486.1:n.437+40C>T
  variant of: http://identifiers.org/hgnc/2333
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6932
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6845
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18822
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 913
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1073
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14159
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 519
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2410
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6840
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 299
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2018
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4896
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7904
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 201
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 730
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5772
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 235
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: European (Finnish)
population: South Asian
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: DP
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum

4-8620297-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8620297
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 8620297
    reference: chr 4
allele count: 1
allele frequency: 9.595455592231518e-6
allele num: 104216
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000371920
  ensembl transcript: ENST00000382480
  gene symbol: CPZ
  hgvsc: ENST00000382480.2:c.1192+42A>G
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109625
  ensembl transcript: ENST00000513486
  gene symbol: CPZ
  hgvsc: ENST00000513486.1:n.437+42A>G
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000155269
  ensembl transcript: ENST00000513120
  gene symbol: GPR78
  hgvsc: ENST00000513120.1:n.3220+42A>G
  variant of: http://identifiers.org/hgnc/4528
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000155269
  ensembl protein: ENSP00000424326
  ensembl transcript: ENST00000514302
  gene symbol: GPR78
  hgvsc: ENST00000514302.1:c.*1618+42A>G
  variant of: http://identifiers.org/hgnc/4528
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000315074
  ensembl transcript: ENST00000315782
  gene symbol: CPZ
  hgvsc: ENST00000315782.6:c.1570+42A>G
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000403981
  ensembl transcript: ENST00000429646
  gene symbol: CPZ
  hgvsc: ENST00000429646.2:c.427+42A>G
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000354255
  ensembl transcript: ENST00000360986
  gene symbol: CPZ
  hgvsc: ENST00000360986.4:c.1603+42A>G
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000422693
  ensembl transcript: ENST00000515606
  gene symbol: CPZ
  hgvsc: ENST00000515606.1:c.*1656+42A>G
  variant of: http://identifiers.org/hgnc/2333
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7133
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1086
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6423
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 901
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14719
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6699
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2352
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18678
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1978
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 673
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1483
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8103
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5825
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 867
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17052
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 490
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: MQ
site quality: InbreedingCoeff

4-8620299-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8620299
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 8620299
    reference: chr 4
allele count: 1
allele frequency: 9.650460326957597e-6
allele num: 103622
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000155269
  ensembl transcript: ENST00000513120
  gene symbol: GPR78
  hgvsc: ENST00000513120.1:n.3220+44G>A
  variant of: http://identifiers.org/hgnc/4528
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000371920
  ensembl transcript: ENST00000382480
  gene symbol: CPZ
  hgvsc: ENST00000382480.2:c.1192+44G>A
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109625
  ensembl transcript: ENST00000513486
  gene symbol: CPZ
  hgvsc: ENST00000513486.1:n.437+44G>A
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000315074
  ensembl transcript: ENST00000315782
  gene symbol: CPZ
  hgvsc: ENST00000315782.6:c.1570+44G>A
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000354255
  ensembl transcript: ENST00000360986
  gene symbol: CPZ
  hgvsc: ENST00000360986.4:c.1603+44G>A
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000422693
  ensembl transcript: ENST00000515606
  gene symbol: CPZ
  hgvsc: ENST00000515606.1:c.*1656+44G>A
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000155269
  ensembl protein: ENSP00000424326
  ensembl transcript: ENST00000514302
  gene symbol: GPR78
  hgvsc: ENST00000514302.1:c.*1618+44G>A
  variant of: http://identifiers.org/hgnc/4528
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000403981
  ensembl transcript: ENST00000429646
  gene symbol: CPZ
  hgvsc: ENST00000429646.2:c.427+44G>A
  variant of: http://identifiers.org/hgnc/2333
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2322
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5987
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1089
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7381
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 894
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14674
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18491
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7142
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5503
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1034
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1653
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 486
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16713
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5887
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 217
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 305
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: QD

4-8620300-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8620300
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 8620300
    reference: chr 4
allele count: 1
allele frequency: 9.707418409148271e-6
allele num: 103014
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000155269
  ensembl protein: ENSP00000424326
  ensembl transcript: ENST00000514302
  gene symbol: GPR78
  hgvsc: ENST00000514302.1:c.*1618+45G>C
  variant of: http://identifiers.org/hgnc/4528
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000354255
  ensembl transcript: ENST00000360986
  gene symbol: CPZ
  hgvsc: ENST00000360986.4:c.1603+45G>C
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000422693
  ensembl transcript: ENST00000515606
  gene symbol: CPZ
  hgvsc: ENST00000515606.1:c.*1656+45G>C
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000315074
  ensembl transcript: ENST00000315782
  gene symbol: CPZ
  hgvsc: ENST00000315782.6:c.1570+45G>C
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109625
  ensembl transcript: ENST00000513486
  gene symbol: CPZ
  hgvsc: ENST00000513486.1:n.437+45G>C
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000403981
  ensembl transcript: ENST00000429646
  gene symbol: CPZ
  hgvsc: ENST00000429646.2:c.427+45G>C
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000155269
  ensembl transcript: ENST00000513120
  gene symbol: GPR78
  hgvsc: ENST00000513120.1:n.3220+45G>C
  variant of: http://identifiers.org/hgnc/4528
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000371920
  ensembl transcript: ENST00000382480
  gene symbol: CPZ
  hgvsc: ENST00000382480.2:c.1192+45G>C
  variant of: http://identifiers.org/hgnc/2333
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7542
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14622
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1088
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2295
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 893
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7470
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18392
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5675
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2244
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8655
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 485
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 307
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1817
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 424
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2016
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5897
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
reference allele: G
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD

4-8620305-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8620305
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 8620305
    reference: chr 4
allele count: 7
allele frequency: 7.104435197401807e-5
allele num: 98530
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000354255
  ensembl transcript: ENST00000360986
  gene symbol: CPZ
  hgvsc: ENST00000360986.4:c.1603+50G>A
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109625
  ensembl transcript: ENST00000513486
  gene symbol: CPZ
  hgvsc: ENST00000513486.1:n.437+50G>A
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000155269
  ensembl protein: ENSP00000424326
  ensembl transcript: ENST00000514302
  gene symbol: GPR78
  hgvsc: ENST00000514302.1:c.*1618+50G>A
  variant of: http://identifiers.org/hgnc/4528
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000371920
  ensembl transcript: ENST00000382480
  gene symbol: CPZ
  hgvsc: ENST00000382480.2:c.1192+50G>A
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000315074
  ensembl transcript: ENST00000315782
  gene symbol: CPZ
  hgvsc: ENST00000315782.6:c.1570+50G>A
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000155269
  ensembl transcript: ENST00000513120
  gene symbol: GPR78
  hgvsc: ENST00000513120.1:n.3220+50G>A
  variant of: http://identifiers.org/hgnc/4528
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000403981
  ensembl transcript: ENST00000429646
  gene symbol: CPZ
  hgvsc: ENST00000429646.2:c.427+50G>A
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000422693
  ensembl transcript: ENST00000515606
  gene symbol: CPZ
  hgvsc: ENST00000515606.1:c.*1656+50G>A
  variant of: http://identifiers.org/hgnc/2333
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8691
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1085
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 522
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4641
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8521
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17611
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2076
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 881
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14426
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4039
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3524
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 227
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 480
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 690
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1978
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1803
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6429
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
population: Latino
reference allele: G
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum

4-8620944-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8620944
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 8620944
    reference: chr 4
allele count: 0
allele frequency: 0.0e0
allele num: 20664
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000403981
  ensembl transcript: ENST00000429646
  gene symbol: CPZ
  hgvsc: ENST00000429646.2:c.428-45G>A
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000155269
  ensembl protein: ENSP00000424326
  ensembl transcript: ENST00000514302
  gene symbol: GPR78
  hgvsc: ENST00000514302.1:c.*1619-45G>A
  variant of: http://identifiers.org/hgnc/4528
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000354255
  ensembl transcript: ENST00000360986
  gene symbol: CPZ
  hgvsc: ENST00000360986.4:c.1604-45G>A
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000315074
  ensembl transcript: ENST00000315782
  gene symbol: CPZ
  hgvsc: ENST00000315782.6:c.1571-45G>A
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000371920
  ensembl transcript: ENST00000382480
  gene symbol: CPZ
  hgvsc: ENST00000382480.2:c.1193-45G>A
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000155269
  ensembl transcript: ENST00000513120
  gene symbol: GPR78
  hgvsc: ENST00000513120.1:n.3221-45G>A
  variant of: http://identifiers.org/hgnc/4528
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109625
  ensembl transcript: ENST00000513486
  gene symbol: CPZ
  hgvsc: ENST00000513486.1:n.438-45G>A
  variant of: http://identifiers.org/hgnc/2333
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109625
  ensembl protein: ENSP00000422693
  ensembl transcript: ENST00000515606
  gene symbol: CPZ
  hgvsc: ENST00000515606.1:c.*1657-45G>A
  variant of: http://identifiers.org/hgnc/2333
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23774
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25256
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 950
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6398
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1744
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 886
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 745
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 266
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
reference allele: G

GenotypeQuality
all individuals: 82
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2222
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 345
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2226
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 42631
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 929
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 193
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11544
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16492
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10390
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 7.505478999669759e-5
allele num: 66618
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 7.71e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.67e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.91e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.984e0

QD
type: SiteQuality
SIO_000300: 1.027e1

MQ
type: SiteQuality
SIO_000300: 5.964e1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.38e-1

DP
type: SiteQuality
SIO_000300: 1.711404e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.6e-2

GenotypeQuality
all individuals: 72
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 415
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42579
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 104
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 212
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 928
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2225
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 90
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 5.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16486
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.002822653294096e-5
allele num: 66604
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10388
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 1.58e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.43e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.16e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.44e-2

QD
type: SiteQuality
SIO_000300: 1.298e1

MQRankSum
type: SiteQuality
SIO_000300: -4.13e-1

FS
type: SiteQuality
SIO_000300: 1.335e0

DP
type: SiteQuality
SIO_000300: 1.710813e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.31e-1

GenotypeQuality
all individuals: 2060
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42579
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 212
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 90
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 415
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9231
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.501411326647048e-5
allele num: 66604
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10388
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16486
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.335e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -4.13e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.31e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.16e0

VQSLOD
type: SiteQuality
SIO_000300: 1.58e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.43e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.44e-2

QD
type: SiteQuality
SIO_000300: 1.298e1

DP
type: SiteQuality
SIO_000300: 1.710813e6

GenotypeQuality
all individuals: 74
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 74
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 76
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 213
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2224
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 342
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9218
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 125
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2217
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 414
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.50154659299078e-5
allele num: 66598
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10388
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16486
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.1e0

DP
type: SiteQuality
SIO_000300: 1.710876e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.95e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.61e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.065e0

MQ
type: SiteQuality
SIO_000300: 5.956e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.35e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.368e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.58e0

GenotypeQuality
all individuals: 4
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 115
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 411
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9207
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 214
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 130
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2233
bin: 9.75e1
variant carriers: 13

GenotypeQuality
all individuals: 69
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2061
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 929
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42476
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2213
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11544
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.926411096127914e-4
allele num: 10382
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 2.426595486532395e-4
allele num: 16484
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 1.051114181031894e-4
allele num: 66596
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.711588e6

VQSLOD
type: SiteQuality
SIO_000300: 2.74e0

QD
type: SiteQuality
SIO_000300: 1.127e1

MQRankSum
type: SiteQuality
SIO_000300: 1.4e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 1.41e-1

MQ
type: SiteQuality
SIO_000300: 5.951e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.1e-2

FS
type: SiteQuality
SIO_000300: 5.17e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.58e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.46e-1

GenotypeQuality
all individuals: 9220
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2226
bin: 9.75e1
variant carriers: 14

GenotypeQuality
all individuals: 409
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 76
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 215
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 341
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 929
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2220
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11544
num of homozygotes: 0

African
type: Population
allele count: 5
allele frequency: 4.814172925091469e-4
allele num: 10386
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.065752759917505e-5
allele num: 16486
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 8
allele frequency: 1.201165130176271e-4
allele num: 66602
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.94e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.58e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.2e-3

MQRankSum
type: SiteQuality
SIO_000300: -2.48e-1

DP
type: SiteQuality
SIO_000300: 1.7115e6

BaseQRankSum
type: SiteQuality
SIO_000300: 8.24e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.3e-1

FS
type: SiteQuality
SIO_000300: 5.18e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.71e0

QD
type: SiteQuality
SIO_000300: 1.31e1

GenotypeQuality
all individuals: 76
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42552
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 110
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 341
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2226
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2220
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2065
bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16486
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11544
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10386
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.501456412720339e-5
allele num: 66602
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -2.48e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 8.24e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.71e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.3e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.58e-1

DP
type: SiteQuality
SIO_000300: 1.7115e6

QD
type: SiteQuality
SIO_000300: 1.31e1

FS
type: SiteQuality
SIO_000300: 5.18e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.2e-3

MQ
type: SiteQuality
SIO_000300: 5.94e1

GenotypeQuality
all individuals: 2220
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 929
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2226
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 215
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2065
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 9220
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 110
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 76
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 409
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 3.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16486
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66602
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.662508662508663e-5
allele num: 11544
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10386
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.18e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.58e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.48e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.2e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 8.24e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.71e0

QD
type: SiteQuality
SIO_000300: 1.31e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.3e-1

DP
type: SiteQuality
SIO_000300: 1.7115e6

MQ
type: SiteQuality
SIO_000300: 5.94e1

GenotypeQuality
all individuals: 55
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2212
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 2063
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 92
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2212
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42498
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9207
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 124
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 406
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 7.507732964953903e-5
allele num: 66598
num of homozygotes: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11544
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10384
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16486
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.47e-2

MQ
type: SiteQuality
SIO_000300: 5.979e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -3.11e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.68e-1

DP
type: SiteQuality
SIO_000300: 1.711087e6

BaseQRankSum
type: SiteQuality
SIO_000300: -8.79e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.89e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.15e-1

QD
type: SiteQuality
SIO_000300: 1.024e1

GenotypeQuality
all individuals: 306
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 858
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 146
bin: 2.5e0
variant carriers: 1

GenotypeQuality
all individuals: 109
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 141
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 134
bin: 3.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1986
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 112
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42221
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 253
bin: 2.25e1
variant carriers: 3

GenotypeQuality
all individuals: 2147
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2090
bin: 9.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 4
allele frequency: 6.213109661385523e-4
allele num: 6438
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.671522719389525e-5
allele num: 11532
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.159285879897983e-4
allele num: 8626
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10322
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.519842106849067e-5
allele num: 66374
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16478
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.62e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.61e-1

FS
type: SiteQuality
SIO_000300: 1.12726e2

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 7.78e-1

DP
type: SiteQuality
SIO_000300: 1.714749e6

VQSLOD
type: SiteQuality
SIO_000300: -6.002e1

QD
type: SiteQuality
SIO_000300: 1.18e0

MQRankSum
type: SiteQuality
SIO_000300: 4.41e-1

MQ
type: SiteQuality
SIO_000300: 5.911e1

GenotypeQuality
all individuals: 1986
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 141
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 226
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 244
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 112
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 370
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 306
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 253
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 9076
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 858
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2147
bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16478
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.671522719389525e-5
allele num: 11532
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6438
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66374
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10322
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -2.62e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.61e-1

DP
type: SiteQuality
SIO_000300: 1.714749e6

VQSLOD
type: SiteQuality
SIO_000300: -6.002e1

MQ
type: SiteQuality
SIO_000300: 5.911e1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.78e-1

QD
type: SiteQuality
SIO_000300: 1.18e0

FS
type: SiteQuality
SIO_000300: 1.12726e2

MQRankSum
type: SiteQuality
SIO_000300: 4.41e-1

GenotypeQuality
all individuals: 2179
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 216
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9240
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variant carriers: 0

GenotypeQuality
all individuals: 869
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
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GenotypeQuality
all individuals: 34
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 47
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variant carriers: 0

GenotypeQuality
all individuals: 309
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variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43171
bin: 6.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16484
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 9
allele frequency: 1.351432518469578e-4
allele num: 66596
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10390
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.513317191283293e-4
allele num: 6608
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

QD
type: SiteQuality
SIO_000300: 1.076e1

MQRankSum
type: SiteQuality
SIO_000300: 1.03e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.693e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.28e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.74e-1

MQ
type: SiteQuality
SIO_000300: 5.933e1

FS
type: SiteQuality
SIO_000300: 5.41e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.93e0

DP
type: SiteQuality
SIO_000300: 1.708448e6

GenotypeQuality
all individuals: 43171
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 370
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 216
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2102
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2014
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9240
bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.066488716330988e-5
allele num: 16484
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10390
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66596
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.03e-1

DP
type: SiteQuality
SIO_000300: 1.708448e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.693e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

MQ
type: SiteQuality
SIO_000300: 5.933e1

FS
type: SiteQuality
SIO_000300: 5.41e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.93e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.28e-1

QD
type: SiteQuality
SIO_000300: 1.076e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.74e-1

GenotypeQuality
all individuals: 34
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
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variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 216
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variant carriers: 0

GenotypeQuality
all individuals: 2179
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variant carriers: 0

GenotypeQuality
all individuals: 35
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variant carriers: 0

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
all individuals: 40
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variant carriers: 0

GenotypeQuality
all individuals: 43171
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 370
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variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2014
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10390
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16484
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66596
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.664009703690868e-5
allele num: 11542
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.693e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.28e-1

FS
type: SiteQuality
SIO_000300: 5.41e-1

MQ
type: SiteQuality
SIO_000300: 5.933e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.74e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.03e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

DP
type: SiteQuality
SIO_000300: 1.708448e6

VQSLOD
type: SiteQuality
SIO_000300: 1.93e0

QD
type: SiteQuality
SIO_000300: 1.076e1

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2090
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 9235
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variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 251
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variant carriers: 0

GenotypeQuality
all individuals: 308
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variant carriers: 0

GenotypeQuality
all individuals: 2173
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variant carriers: 0

GenotypeQuality
all individuals: 0
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variant carriers: 0

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 866
bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 2.887391722810395e-4
allele num: 10390
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66586
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11536
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16470
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.11e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.173e0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.82e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.64e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
SIO_000300: 1.706e1

FS
type: SiteQuality
SIO_000300: 2.107e0

VQSLOD
type: SiteQuality
SIO_000300: 7.31e-1

MQ
type: SiteQuality
SIO_000300: 5.954e1

DP
type: SiteQuality
SIO_000300: 1.707537e6

GenotypeQuality
all individuals: 2168
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
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variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43
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variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2016
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variant carriers: 0

GenotypeQuality
all individuals: 307
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variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36
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variant carriers: 0

GenotypeQuality
all individuals: 65
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variant carriers: 0

GenotypeQuality
all individuals: 56
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variant carriers: 0

GenotypeQuality
all individuals: 9226
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2089
bin: 9.75e1
variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10388
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.073858114674441e-5
allele num: 16464
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11536
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66576
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.707035e6

FS
type: SiteQuality
SIO_000300: 9.96e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.67e-1

MQ
type: SiteQuality
SIO_000300: 5.962e1

VQSLOD
type: SiteQuality
SIO_000300: 2.81e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.444e0

MQRankSum
type: SiteQuality
SIO_000300: -1.69e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 1.83e-1

QD
type: SiteQuality
SIO_000300: 9.380000000000001e0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
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GenotypeQuality
all individuals: 2158
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variant carriers: 0

GenotypeQuality
all individuals: 9212
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variant carriers: 0

GenotypeQuality
all individuals: 369
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GenotypeQuality
all individuals: 58
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GenotypeQuality
all individuals: 64
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GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41
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GenotypeQuality
all individuals: 42969
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variant carriers: 0

GenotypeQuality
all individuals: 41
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variant carriers: 0

GenotypeQuality
all individuals: 77
bin: 5.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10382
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.011602392617753e-5
allele num: 66538
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16456
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11534
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.4e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

FS
type: SiteQuality
SIO_000300: 8.99e-1

DP
type: SiteQuality
SIO_000300: 1.705818e6

BaseQRankSum
type: SiteQuality
SIO_000300: -3.15e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.929999999999999e-1

MQ
type: SiteQuality
SIO_000300: 5.949e1

QD
type: SiteQuality
SIO_000300: 1.007e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.6e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 3.15e-1

GenotypeQuality
all individuals: 94
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 48
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variant carriers: 0

GenotypeQuality
all individuals: 43
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variant carriers: 0

GenotypeQuality
all individuals: 4
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variant carriers: 0

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
all individuals: 2152
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GenotypeQuality
all individuals: 2
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GenotypeQuality
all individuals: 84
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GenotypeQuality
all individuals: 51
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GenotypeQuality
all individuals: 370
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GenotypeQuality
all individuals: 2006
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GenotypeQuality
all individuals: 852
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GenotypeQuality
all individuals: 42914
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10382
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.076810889645114e-5
allele num: 16456
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11534
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.012325266796934e-5
allele num: 66530
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.87e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.0e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

DP
type: SiteQuality
SIO_000300: 1.705639e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.318e0

MQRankSum
type: SiteQuality
SIO_000300: 1.91e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.01e0

FS
type: SiteQuality
SIO_000300: 4.69e-1

QD
type: SiteQuality
SIO_000300: 1.167e1

GenotypeQuality
all individuals: 369
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2152
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 7.5e0
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GenotypeQuality
all individuals: 40
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 369
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 305
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9206
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2002
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2087
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 64
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 852
bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16448
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10382
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11534
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.503216884132043e-5
allele num: 66524
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.70512e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.8e0

MQ
type: SiteQuality
SIO_000300: 5.91e1

FS
type: SiteQuality
SIO_000300: 7.51e-1

QD
type: SiteQuality
SIO_000300: 8.35e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.17e-1

VQSLOD
type: SiteQuality
SIO_000300: -4.855e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.629999999999999e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.18e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 305
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 2.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16448
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10382
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.503216884132043e-5
allele num: 66524
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11534
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -4.855e-1

QD
type: SiteQuality
SIO_000300: 8.35e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 1.18e0

MQ
type: SiteQuality
SIO_000300: 5.91e1

FS
type: SiteQuality
SIO_000300: 7.51e-1

DP
type: SiteQuality
SIO_000300: 1.70512e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.629999999999999e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.8e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.17e-1

GenotypeQuality
all individuals: 417
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
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GenotypeQuality
all individuals: 3
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.5e0
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GenotypeQuality
all individuals: 369
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
all individuals: 1991
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 49
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variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 5.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6592
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.082725060827251e-5
allele num: 16440
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66482
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10380
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11524
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.271e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -2.467e0

MQRankSum
type: SiteQuality
SIO_000300: -4.46e-1

MQ
type: SiteQuality
SIO_000300: 5.903e1

DP
type: SiteQuality
SIO_000300: 1.704498e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.99e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.65e-1

QD
type: SiteQuality
SIO_000300: 4.81e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.22e0

GenotypeQuality
all individuals: 2138
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
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variant carriers: 0

GenotypeQuality
all individuals: 80
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 60
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 7

GenotypeQuality
all individuals: 59
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GenotypeQuality
all individuals: 76
bin: 5.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10374
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11520
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16436
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.504121292341014e-5
allele num: 66484
num of homozygotes: 0

East Asian
type: Population
allele count: 6
allele frequency: 6.947660954145438e-4
allele num: 8636
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -9.3e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.899999999999999e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -4.989e-1

FS
type: SiteQuality
SIO_000300: 1.279e0

MQ
type: SiteQuality
SIO_000300: 5.875e1

QD
type: SiteQuality
SIO_000300: 1.111e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.98e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.0e-3

DP
type: SiteQuality
SIO_000300: 1.703887e6

GenotypeQuality
all individuals: 42901
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 472
bin: 2.25e1
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GenotypeQuality
all individuals: 1966
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 59
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 359
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GenotypeQuality
all individuals: 2161
bin: 9.75e1
variant carriers: 139

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.106194690265487e-3
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.512906913773392e-5
allele num: 66476
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16438
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

Latino
type: Population
allele count: 8
allele frequency: 6.945650286508074e-4
allele num: 11518
num of homozygotes: 0

African
type: Population
allele count: 127
allele frequency: 1.224922839506173e-2
allele num: 10368
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.96e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.9e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.4e-3

FS
type: SiteQuality
SIO_000300: 5.36e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.32e-1

QD
type: SiteQuality
SIO_000300: 1.248e1

VQSLOD
type: SiteQuality
SIO_000300: 4.34e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.94e0

DP
type: SiteQuality
SIO_000300: 1.707338e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.85e-1

GenotypeQuality
all individuals: 4
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2
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GenotypeQuality
all individuals: 49
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1969
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 94
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 82
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GenotypeQuality
all individuals: 290
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 9.643201542912247e-5
allele num: 10370
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16422
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.69414014953921e-5
allele num: 11502
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6592
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.157675387821255e-4
allele num: 8638
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 7.528533140602885e-5
allele num: 66414
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.56e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 3.53e-1

MQ
type: SiteQuality
SIO_000300: 5.389e1

QD
type: SiteQuality
SIO_000300: 1.047e1

MQRankSum
type: SiteQuality
SIO_000300: -3.381e0

DP
type: SiteQuality
SIO_000300: 1.699924e6

FS
type: SiteQuality
SIO_000300: 5.79e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.68e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.9e-1

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 837
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11496
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10342
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6576
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16398
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.508295625942685e-5
allele num: 66300
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 8.2e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.37e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.57e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -1.746e0

QD
type: SiteQuality
SIO_000300: 1.243e1

DP
type: SiteQuality
SIO_000300: 1.695794e6

FS
type: SiteQuality
SIO_000300: 8.5e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.6e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
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GenotypeQuality
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GenotypeQuality
all individuals: 151
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GenotypeQuality
all individuals: 1939
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 41911
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GenotypeQuality
all individuals: 355
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10290
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6552
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16370
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11468
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.022243713733075e-5
allele num: 66176
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.78e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.6903e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 5.610000000000001e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.77e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.09e-1

QD
type: SiteQuality
SIO_000300: 1.268e1

VQSLOD
type: SiteQuality
SIO_000300: 9.91e-1

GenotypeQuality
all individuals: 1051
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
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GenotypeQuality
all individuals: 2033
bin: 9.75e1
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GenotypeQuality
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GenotypeQuality
all individuals: 1937
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GenotypeQuality
all individuals: 176
bin: 5.75e1
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GenotypeQuality
all individuals: 2099
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 200
bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11470
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8612
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16370
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.5109391998066e-5
allele num: 66184
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6552
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10290
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.690082e6

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.39e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.92e-1

QD
type: SiteQuality
SIO_000300: 1.156e1

MQRankSum
type: SiteQuality
SIO_000300: 1.27e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -8.988e-1

MQ
type: SiteQuality
SIO_000300: 5.871e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.13e-1

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1934
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 158
bin: 3.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11464
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.511807214344027e-5
allele num: 66146
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6544
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16364
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10284
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.98e0

QD
type: SiteQuality
SIO_000300: 9.69e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.511e0

VQSLOD
type: SiteQuality
SIO_000300: 2.95e-1

FS
type: SiteQuality
SIO_000300: 1.642e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.93e0

MQ
type: SiteQuality
SIO_000300: 5.951e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 6.840000000000001e-1

DP
type: SiteQuality
SIO_000300: 1.687961e6

GenotypeQuality
all individuals: 11
bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2034
bin: 9.75e1
variant carriers: 2

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11456
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10274
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6538
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66110
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8602
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.222792858889704e-4
allele num: 16356
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.852e0

QD
type: SiteQuality
SIO_000300: 6.94e0

MQRankSum
type: SiteQuality
SIO_000300: 1.55e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.29e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

DP
type: SiteQuality
SIO_000300: 1.686673e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.87e-1

VQSLOD
type: SiteQuality
SIO_000300: -9.965000000000001e-1

MQ
type: SiteQuality
SIO_000300: 5.947e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.01e0

GenotypeQuality
all individuals: 1547
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 8839
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variant carriers: 0

GenotypeQuality
all individuals: 816
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 9.773260359655981e-5
allele num: 10232
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8586
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11436
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16314
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6514
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65970
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 6.63e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.42e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.873e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.61e-1

DP
type: SiteQuality
SIO_000300: 1.679116e6

MQRankSum
type: SiteQuality
SIO_000300: 1.35e0

FS
type: SiteQuality
SIO_000300: 3.974e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.698e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

GenotypeQuality
all individuals: 1881
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 258
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 351
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 11

GenotypeQuality
all individuals: 8732
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variant carriers: 0

GenotypeQuality
all individuals: 806
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10194
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6484
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8560
num of homozygotes: 0

South Asian
type: Population
allele count: 10
allele frequency: 6.148548942449582e-4
allele num: 16264
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11400
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.5194797301404e-5
allele num: 65812
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.07e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.8e0

MQRankSum
type: SiteQuality
SIO_000300: -1.9e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.69e-1

DP
type: SiteQuality
SIO_000300: 1.671273e6

FS
type: SiteQuality
SIO_000300: 5.71e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.78e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.69e-1

MQ
type: SiteQuality
SIO_000300: 5.962e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

GenotypeQuality
all individuals: 116
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 802
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variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
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GenotypeQuality
all individuals: 19
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variant carriers: 0

GenotypeQuality
all individuals: 2015
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
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GenotypeQuality
all individuals: 308
bin: 5.75e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 266
bin: 3.75e1
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GenotypeQuality
all individuals: 2037
bin: 9.75e1
variant carriers: 20

GenotypeQuality
all individuals: 2012
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 346
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 284
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 3
allele frequency: 2.947533896639811e-4
allele num: 10178
num of homozygotes: 0

Latino
type: Population
allele count: 7
allele frequency: 6.144662921348314e-4
allele num: 11392
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6480
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.150061500615006e-5
allele num: 16260
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8562
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 9
allele frequency: 1.368529894775257e-4
allele num: 65764
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

FS
type: SiteQuality
SIO_000300: 6.5e-1

QD
type: SiteQuality
SIO_000300: 1.275e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.32e-1

DP
type: SiteQuality
SIO_000300: 1.668192e6

VQSLOD
type: SiteQuality
SIO_000300: 3.46e0

MQRankSum
type: SiteQuality
SIO_000300: 1.13e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.87e-1

MQ
type: SiteQuality
SIO_000300: 5.962e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.606e0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 2037
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variant carriers: 1

GenotypeQuality
all individuals: 346
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 116
bin: 4.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8562
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.520588771972508e-5
allele num: 65764
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11392
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10178
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16260
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6480
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 6.5e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.46e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.87e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.32e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.13e-1

DP
type: SiteQuality
SIO_000300: 1.668192e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

QD
type: SiteQuality
SIO_000300: 1.275e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.606e0

MQ
type: SiteQuality
SIO_000300: 5.962e1

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8554
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10166
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.153088850603002e-5
allele num: 16252
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11382
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65712
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6474
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.16e0

QD
type: SiteQuality
SIO_000300: 1.527e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.88e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.06e-1

DP
type: SiteQuality
SIO_000300: 1.66452e6

MQRankSum
type: SiteQuality
SIO_000300: 5.17e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.27e0

FS
type: SiteQuality
SIO_000300: 2.649e0

MQ
type: SiteQuality
SIO_000300: 5.748e1

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
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GenotypeQuality
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GenotypeQuality
all individuals: 14
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
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GenotypeQuality
all individuals: 2018
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1984
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6454
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10144
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8546
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.798169980644026e-5
allele num: 11366
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.16370808678501e-5
allele num: 16224
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65620
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.498e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.27e0

VQSLOD
type: SiteQuality
SIO_000300: 1.54e0

FS
type: SiteQuality
SIO_000300: 6.719e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

MQ
type: SiteQuality
SIO_000300: 5.695e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.77e-1

QD
type: SiteQuality
SIO_000300: 1.6e1

DP
type: SiteQuality
SIO_000300: 1.660493e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.12e-1

GenotypeQuality
all individuals: 398
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 280
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 117
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2017
bin: 9.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6460
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8548
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10146
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.523693432881304e-5
allele num: 65630
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 8.2e-1

ReadPosRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.801e1

DP
type: SiteQuality
SIO_000300: 1.659636e6

ClippingRankSum
type: SiteQuality
SIO_000300: -5.41e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.78e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

FS
type: SiteQuality
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QD
type: SiteQuality
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VQSLOD
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SIO_000300: -1.725e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 65570
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10126
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11356
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8544
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South Asian
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allele frequency: 6.171315724512466e-5
allele num: 16204
num of homozygotes: 0

VQSLOD
type: SiteQuality
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ClippingRankSum
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BaseQRankSum
type: SiteQuality
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InbreedingCoeff
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DP
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ReadPosRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.631e1

FS
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MQRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 3.052037234854265e-5
allele num: 65530
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11350
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6434
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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African
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allele frequency: 1.979414093428345e-4
allele num: 10104
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ReadPosRankSum
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ClippingRankSum
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VQSLOD
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FS
type: SiteQuality
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InbreedingCoeff
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MQRankSum
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MQ
type: SiteQuality
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DP
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BaseQRankSum
type: SiteQuality
SIO_000300: -1.866e0

QD
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11350
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10104
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6434
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.526018617427133e-5
allele num: 65530
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -4.98e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.654677e6

QD
type: SiteQuality
SIO_000300: 1.085e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.866e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.06e-1

InbreedingCoeff
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 1.2724e1

VQSLOD
type: SiteQuality
SIO_000300: -1.812e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.9e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

African
type: Population
allele count: 1
allele frequency: 9.897070467141726e-5
allele num: 10104
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6434
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16192
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65530
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8532
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11350
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.2724e1

InbreedingCoeff
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.654677e6

VQSLOD
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BaseQRankSum
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MQRankSum
type: SiteQuality
SIO_000300: -4.98e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.06e-1

QD
type: SiteQuality
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ReadPosRankSum
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SIO_000300: -2.9e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6422
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11334
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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East Asian
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.528397627926881e-5
allele num: 65428
num of homozygotes: 0

African
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VQSLOD
type: SiteQuality
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FS
type: SiteQuality
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ClippingRankSum
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MQRankSum
type: SiteQuality
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QD
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MQ
type: SiteQuality
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InbreedingCoeff
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ReadPosRankSum
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DP
type: SiteQuality
SIO_000300: 1.648258e6

BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele frequency: 8.854258898530193e-5
allele num: 11294
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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African
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South Asian
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allele frequency: 0.0e0
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Other
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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VQSLOD
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MQ
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InbreedingCoeff
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QD
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ClippingRankSum
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MQRankSum
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BaseQRankSum
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DP
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FS
type: SiteQuality
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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Latino
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Other
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num of homozygotes: 0

South Asian
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European (Finnish)
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European (Non-Finnish)
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allele frequency: 3.069556142181841e-5
allele num: 65156
num of homozygotes: 0

African
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East Asian
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ClippingRankSum
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BaseQRankSum
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FS
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MQRankSum
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QD
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InbreedingCoeff
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DP
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MQ
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ReadPosRankSum
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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European (Finnish)
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African
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South Asian
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East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 1.55550024888004e-5
allele num: 64288
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VQSLOD
type: SiteQuality
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MQRankSum
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MQ
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ClippingRankSum
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QD
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FS
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InbreedingCoeff
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DP
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ReadPosRankSum
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6256
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8378
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11054
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.259389083625437e-5
allele num: 15976
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64016
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.155e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.505e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

QD
type: SiteQuality
SIO_000300: 3.54e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.75e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.23e0

VQSLOD
type: SiteQuality
SIO_000300: -3.356e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.570425e6

GenotypeQuality
all individuals: 2277
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 74
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1544
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6659
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1992
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 319
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9588
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.779505480499618e-5
allele num: 62768
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15788
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6116
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8208
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10816
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 862
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.371e1

FS
type: SiteQuality
SIO_000300: 3.873e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.47e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.6e-3

VQSLOD
type: SiteQuality
SIO_000300: 1.62e0

MQRankSum
type: SiteQuality
SIO_000300: 7.83e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.41e-1

DP
type: SiteQuality
SIO_000300: 1.482038e6

ClippingRankSum
type: SiteQuality
SIO_000300: -2.61e-1

GenotypeQuality
all individuals: 526
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 251
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2010
bin: 9.75e1
variant carriers: 27

African
type: Population
allele count: 1
allele frequency: 1.053962900505902e-4
allele num: 9488
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 24
allele frequency: 3.863614411281754e-4
allele num: 62118
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6068
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.246261216350947e-4
allele num: 8024
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 9.375585974123383e-5
allele num: 10666
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 852
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15688
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.0e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.31e0

DP
type: SiteQuality
SIO_000300: 1.419033e6

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.2e-3

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.219e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.9e-1

QD
type: SiteQuality
SIO_000300: 1.424e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 312
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 435
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 358
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GenotypeQuality
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GenotypeQuality
all individuals: 469
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1223
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GenotypeQuality
all individuals: 1982
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variant carriers: 1

GenotypeQuality
all individuals: 1183
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variant carriers: 0

GenotypeQuality
all individuals: 1522
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 609
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variant carriers: 0

GenotypeQuality
all individuals: 27177
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 9.380863039399625e-5
allele num: 10660
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62004
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15684
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7922
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6054
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 854
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9468
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -5.854e-1

DP
type: SiteQuality
SIO_000300: 1.411364e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.84e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.2e-3

FS
type: SiteQuality
SIO_000300: 3.31e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.909999999999999e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.37e-1

QD
type: SiteQuality
SIO_000300: 7.3e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.35e0

GenotypeQuality
all individuals: 100
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1163
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3233
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 312
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variant carriers: 0

GenotypeQuality
all individuals: 31
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variant carriers: 0

GenotypeQuality
all individuals: 1978
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variant carriers: 1

GenotypeQuality
all individuals: 246
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variant carriers: 0

GenotypeQuality
all individuals: 1594
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variant carriers: 0

GenotypeQuality
all individuals: 413
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GenotypeQuality
all individuals: 27109
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variant carriers: 0

GenotypeQuality
all individuals: 407
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 435
bin: 4.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.615352308338448e-5
allele num: 61906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10610
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9442
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 846
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15648
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7852
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6044
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.2e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.398546e6

MQRankSum
type: SiteQuality
SIO_000300: 5.89e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.016e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.191e0

VQSLOD
type: SiteQuality
SIO_000300: -2.17e0

QD
type: SiteQuality
SIO_000300: 9.029999999999999e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.14e0

MQ
type: SiteQuality
SIO_000300: 5.705e1

GenotypeQuality
all individuals: 583
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 244
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 536
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variant carriers: 0

GenotypeQuality
all individuals: 14063
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variant carriers: 0

GenotypeQuality
all individuals: 1156
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1108
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variant carriers: 0

GenotypeQuality
all individuals: 24845
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variant carriers: 0

GenotypeQuality
all individuals: 167
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 290
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 309
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variant carriers: 0

GenotypeQuality
all individuals: 4591
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 171
bin: 1.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7638
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6022
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15542
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.626016260162601e-5
allele num: 61500
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10530
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9384
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 844
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.49e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.785e0

MQ
type: SiteQuality
SIO_000300: 5.452e1

QD
type: SiteQuality
SIO_000300: 1.045e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.48e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.4e-3

FS
type: SiteQuality
SIO_000300: 1.0229e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.4e-2

MQRankSum
type: SiteQuality
SIO_000300: -1.057e0

DP
type: SiteQuality
SIO_000300: 1.365918e6

GenotypeQuality
all individuals: 1866
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24845
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 171
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3499
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variant carriers: 0

GenotypeQuality
all individuals: 466
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GenotypeQuality
all individuals: 309
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GenotypeQuality
all individuals: 244
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GenotypeQuality
all individuals: 536
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variant carriers: 0

GenotypeQuality
all individuals: 1156
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1108
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4591
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61500
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9384
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.434178355424013e-5
allele num: 15542
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 844
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10530
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7638
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6022
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.4e-2

MQRankSum
type: SiteQuality
SIO_000300: -1.057e0

FS
type: SiteQuality
SIO_000300: 1.0229e1

QD
type: SiteQuality
SIO_000300: 1.045e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.49e-1

DP
type: SiteQuality
SIO_000300: 1.365918e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.4e-3

MQ
type: SiteQuality
SIO_000300: 5.452e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.48e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.785e0

GenotypeQuality
all individuals: 21565
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 731
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GenotypeQuality
all individuals: 14796
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variant carriers: 0

GenotypeQuality
all individuals: 305
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variant carriers: 0

GenotypeQuality
all individuals: 242
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GenotypeQuality
all individuals: 657
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GenotypeQuality
all individuals: 1099
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variant carriers: 0

GenotypeQuality
all individuals: 589
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1983
bin: 9.75e1
variant carriers: 10

GenotypeQuality
all individuals: 307
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variant carriers: 0

GenotypeQuality
all individuals: 4367
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variant carriers: 0

GenotypeQuality
all individuals: 566
bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 11
allele frequency: 7.140075295339478e-4
allele num: 15406
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5976
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 834
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6982
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60984
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9246
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.38e0

DP
type: SiteQuality
SIO_000300: 1.329291e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.4e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 3.63e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.962e0

QD
type: SiteQuality
SIO_000300: 1.268e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.4e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 3.11e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 635
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14926
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 825
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GenotypeQuality
all individuals: 1025
bin: 7.25e1
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
all individuals: 538
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GenotypeQuality
all individuals: 1070
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GenotypeQuality
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GenotypeQuality
all individuals: 4241
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GenotypeQuality
all individuals: 3878
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 555
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 65
allele frequency: 1.065259431643122e-3
allele num: 61018
num of homozygotes: 2

Latino
type: Population
allele count: 9
allele frequency: 8.637236084452975e-4
allele num: 10420
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6994
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.201923076923077e-3
allele num: 832
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5976
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.161227577263886e-4
allele num: 9254
num of homozygotes: 0

South Asian
type: Population
allele count: 15
allele frequency: 9.741524873360176e-4
allele num: 15398
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.327306e6

MQRankSum
type: SiteQuality
SIO_000300: 1.42e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.76e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.66e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.62e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 6.02e0

QD
type: SiteQuality
SIO_000300: 1.483e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.16e-1

GenotypeQuality
all individuals: 153
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 585
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4102
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 240
bin: 8.75e1
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GenotypeQuality
all individuals: 301
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 404
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GenotypeQuality
all individuals: 641
bin: 5.25e1
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GenotypeQuality
all individuals: 2529
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1030
bin: 7.75e1
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GenotypeQuality
all individuals: 1970
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variant carriers: 1

GenotypeQuality
all individuals: 990
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 735
bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60596
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 814
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.559958016268695e-5
allele num: 15244
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10334
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6468
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5914
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9146
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.4e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 3.05e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.01e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.15e-1

FS
type: SiteQuality
SIO_000300: 1.299e0

DP
type: SiteQuality
SIO_000300: 1.303052e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.964e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.47e0

QD
type: SiteQuality
SIO_000300: 1.009e1

GenotypeQuality
all individuals: 388
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20467
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
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GenotypeQuality
all individuals: 1970
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variant carriers: 1

GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1014
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2511
bin: 3.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.650546330835507e-5
allele num: 60586
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 818
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15238
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9146
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10330
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6490
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.4e-3

VQSLOD
type: SiteQuality
SIO_000300: -1.369e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.37e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.89e-1

DP
type: SiteQuality
SIO_000300: 1.301973e6

MQRankSum
type: SiteQuality
SIO_000300: -1.271e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.65e-1

MQ
type: SiteQuality
SIO_000300: 5.899e1

QD
type: SiteQuality
SIO_000300: 9.98e0

GenotypeQuality
all individuals: 1008
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 869
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GenotypeQuality
all individuals: 300
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1968
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 527
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variant carriers: 0

GenotypeQuality
all individuals: 240
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variant carriers: 0

GenotypeQuality
all individuals: 723
bin: 4.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15122
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5840
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10182
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60004
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.1059500110595e-4
allele num: 9042
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6280
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 808
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.742e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.19e-1

DP
type: SiteQuality
SIO_000300: 1.265208e6

QD
type: SiteQuality
SIO_000300: 2.57e0

MQRankSum
type: SiteQuality
SIO_000300: 1.04e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.1e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.164e0

GenotypeQuality
all individuals: 886
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 718
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 533
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variant carriers: 0

GenotypeQuality
all individuals: 3270
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variant carriers: 0

GenotypeQuality
all individuals: 4868
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variant carriers: 0

GenotypeQuality
all individuals: 512
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GenotypeQuality
all individuals: 526
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GenotypeQuality
all individuals: 900
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 240
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variant carriers: 0

GenotypeQuality
all individuals: 846
bin: 4.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8986
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6150
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.678021277309796e-5
allele num: 59594
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 806
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10112
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.633059166887768e-5
allele num: 15076
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5798
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.33e-1

DP
type: SiteQuality
SIO_000300: 1.235946e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.7e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.133e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 4.1e-2

FS
type: SiteQuality
SIO_000300: 3.075e0

VQSLOD
type: SiteQuality
SIO_000300: 9.71e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.146e1

GenotypeQuality
all individuals: 846
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3232
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 192
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 718
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 240
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variant carriers: 0

GenotypeQuality
all individuals: 526
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variant carriers: 0

GenotypeQuality
all individuals: 900
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variant carriers: 0

GenotypeQuality
all individuals: 4868
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 512
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 296
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variant carriers: 0

GenotypeQuality
all individuals: 16615
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3270
bin: 3.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10112
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 59594
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5798
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 806
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6150
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8986
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.633059166887768e-5
allele num: 15076
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.235946e6

FS
type: SiteQuality
SIO_000300: 3.075e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.33e-1

QD
type: SiteQuality
SIO_000300: 1.146e1

VQSLOD
type: SiteQuality
SIO_000300: 9.71e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.7e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.133e0

MQRankSum
type: SiteQuality
SIO_000300: 4.1e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

East Asian
type: Population
allele count: 1
allele frequency: 1.353546291283162e-4
allele num: 7388
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10092
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 820
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.82e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.51e-1

DP
type: SiteQuality
SIO_000300: 1.208759e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.302e-1

MQ
type: SiteQuality
SIO_000300: 5.482e1

MQRankSum
type: SiteQuality
SIO_000300: -1.356e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.65e-1

QD
type: SiteQuality
SIO_000300: 1.992e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.44e-1

GenotypeQuality
all individuals: 764
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 300
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variant carriers: 0

GenotypeQuality
all individuals: 222
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variant carriers: 0

GenotypeQuality
all individuals: 14272
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variant carriers: 0

GenotypeQuality
all individuals: 722
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variant carriers: 0

GenotypeQuality
all individuals: 823
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variant carriers: 0

GenotypeQuality
all individuals: 512
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GenotypeQuality
all individuals: 869
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5239
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 641
bin: 5.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10092
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 820
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 59326
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9092
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5830
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7388
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.305994514823038e-4
allele num: 15314
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.51e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.82e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.44e-1

MQ
type: SiteQuality
SIO_000300: 5.482e1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.65e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.302e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.356e0

DP
type: SiteQuality
SIO_000300: 1.208759e6

QD
type: SiteQuality
SIO_000300: 1.992e1

GenotypeQuality
all individuals: 15769
bin: 2.25e1
variant carriers: 12

GenotypeQuality
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bin: 1.75e1
variant carriers: 13

GenotypeQuality
all individuals: 6152
bin: 3.25e1
variant carriers: 18

GenotypeQuality
all individuals: 641
bin: 5.75e1
variant carriers: 29

GenotypeQuality
all individuals: 2934
bin: 6.75e1
variant carriers: 31

GenotypeQuality
all individuals: 1086
bin: 7.5e0
variant carriers: 16

GenotypeQuality
all individuals: 5239
bin: 9.75e1
variant carriers: 3331

GenotypeQuality
all individuals: 222
bin: 2.5e0
variant carriers: 8

GenotypeQuality
all individuals: 254
bin: 8.75e1
variant carriers: 24

GenotypeQuality
all individuals: 14272
bin: 6.25e1
variant carriers: 30

GenotypeQuality
all individuals: 764
bin: 4.75e1
variant carriers: 27

GenotypeQuality
all individuals: 869
bin: 7.75e1
variant carriers: 15

South Asian
type: Population
allele count: 639
allele frequency: 4.172652474859605e-2
allele num: 15314
num of homozygotes: 18

East Asian
type: Population
allele count: 2043
allele frequency: 2.7652950730915e-1
allele num: 7388
num of homozygotes: 236

African
type: Population
allele count: 382
allele frequency: 4.20149582050154e-2
allele num: 9092
num of homozygotes: 11

European (Finnish)
type: Population
allele count: 95
allele frequency: 1.629502572898799e-2
allele num: 5830
num of homozygotes: 0

Latino
type: Population
allele count: 167
allele frequency: 1.654776060245739e-2
allele num: 10092
num of homozygotes: 0

Other
type: Population
allele count: 25
allele frequency: 3.048780487804878e-2
allele num: 820
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 411
allele frequency: 6.927822539864478e-3
allele num: 59326
num of homozygotes: 2

BaseQRankSum
type: SiteQuality
SIO_000300: 2.65e-1

DP
type: SiteQuality
SIO_000300: 1.208759e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.44e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.302e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.82e0

MQRankSum
type: SiteQuality
SIO_000300: -1.356e0

QD
type: SiteQuality
SIO_000300: 1.992e1

MQ
type: SiteQuality
SIO_000300: 5.482e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.51e-1

GenotypeQuality
all individuals: 4995
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 827
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variant carriers: 0

GenotypeQuality
all individuals: 13089
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 489
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variant carriers: 0

GenotypeQuality
all individuals: 625
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variant carriers: 0

GenotypeQuality
all individuals: 479
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variant carriers: 0

GenotypeQuality
all individuals: 227
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GenotypeQuality
all individuals: 536
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GenotypeQuality
all individuals: 823
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 755
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15861
bin: 2.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9662
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.728130508415996e-5
allele num: 57866
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3760
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8242
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5596
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 766
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14012
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.66e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.17e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.1e0

DP
type: SiteQuality
SIO_000300: 1.103735e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -2.18e0

QD
type: SiteQuality
SIO_000300: 9.67e0

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 1248
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 996
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 260
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 625
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 479
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 827
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6538
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1907
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variant carriers: 1

GenotypeQuality
all individuals: 227
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variant carriers: 0

GenotypeQuality
all individuals: 13089
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 536
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3664
bin: 3.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8242
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.136739937196689e-5
allele num: 14012
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9662
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 766
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 57866
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3760
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5596
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.103735e6

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.1e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.17e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -2.18e0

VQSLOD
type: SiteQuality
SIO_000300: 1.66e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 9.67e0

GenotypeQuality
all individuals: 162
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5413
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 242
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2737
bin: 6.75e1
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GenotypeQuality
all individuals: 542
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 902
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 9958
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 808
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 15144
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 7252
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5738
num of homozygotes: 0

African
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allele count: 1
allele frequency: 1.117068811438785e-4
allele num: 8952
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 58442
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.16742e6

QD
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: -3.64e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.591e0

MQRankSum
type: SiteQuality
SIO_000300: 1.77e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.5e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.42e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.18e0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 8806
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5686
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9800
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14992
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.722474851867163e-5
allele num: 58056
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6742
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 802
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.52e-1

VQSLOD
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 9.130000000000001e0

MQRankSum
type: SiteQuality
SIO_000300: 1.82e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.28e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.153803e6

BaseQRankSum
type: SiteQuality
SIO_000300: -3.115e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.0e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 798
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8800
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5662
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15010
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7004
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9754
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.73460537727667e-5
allele num: 57650
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.129463e6

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.674e1

MQRankSum
type: SiteQuality
SIO_000300: 1.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.31e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.86e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.525e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.8e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -3.86e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2017
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variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 804
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5644
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.143641354071363e-4
allele num: 8744
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9694
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6948
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 57392
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14990
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.332e0

MQRankSum
type: SiteQuality
SIO_000300: -8.96e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.58e-1

FS
type: SiteQuality
SIO_000300: 2.776e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.14e0

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.120356e6

QD
type: SiteQuality
SIO_000300: 1.957e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.6e-3

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 798
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.039284971939306e-4
allele num: 9622
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8672
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6902
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5632
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14914
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 57082
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -9.22e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.7e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -1.036e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.03e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.79e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.129999999999999e-1

DP
type: SiteQuality
SIO_000300: 1.114732e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 7.66e0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14870
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.455180442374854e-4
allele num: 6872
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 800
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 56710
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8600
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9548
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.111133e6

MQRankSum
type: SiteQuality
SIO_000300: 1.79e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.66e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.46e0

QD
type: SiteQuality
SIO_000300: 7.47e0

MQ
type: SiteQuality
SIO_000300: 5.177e1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.889999999999999e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.2e-3

VQSLOD
type: SiteQuality
SIO_000300: -1.502e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 768
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6488
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 54186
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8210
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5328
num of homozygotes: 0

South Asian
type: Population
allele count: 7
allele frequency: 4.820936639118458e-4
allele num: 14520
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9030
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.096533e6

MQRankSum
type: SiteQuality
SIO_000300: 4.91e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.04e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.500000000000001e-3

QD
type: SiteQuality
SIO_000300: 1.214e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.78e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.09e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.625e0