6-10410317-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10410317
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 10410317
    reference: chr 6
allele count: 1
allele frequency: 8.521662064969151e-6
allele num: 117348
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000418391
  ensembl transcript: ENST00000465858
  gene symbol: TFAP2A
  hgvsc: ENST00000465858.1:c.432G>C
  hgvsp: ENSP00000418391.1:p.Gln144His
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000418541
  ensembl transcript: ENST00000482890
  gene symbol: TFAP2A
  hgvsc: ENST00000482890.1:c.297G>C
  hgvsp: ENSP00000418541.1:p.Gln99His
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000490875
  gene symbol: TFAP2A
  hgvsc: ENST00000490875.1:n.539G>C
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000464323
  gene symbol: TFAP2A
  hgvsc: ENST00000464323.1:n.389G>C
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000474952
  gene symbol: TFAP2A
  hgvsc: ENST00000474952.1:n.729G>C
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000368924
  ensembl transcript: ENST00000379604
  gene symbol: TFAP2A
  hgvsc: ENST00000379604.2:c.297G>C
  hgvsp: ENSP00000368924.2:p.Gln99His
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000368928
  ensembl transcript: ENST00000379608
  gene symbol: TFAP2A
  hgvsc: ENST00000379608.3:c.279G>C
  hgvsp: ENSP00000368928.3:p.Gln93His
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000497266
  gene symbol: TFAP2A
  hgvsc: ENST00000497266.1:n.268G>C
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000419696
  ensembl transcript: ENST00000475264
  gene symbol: TFAP2A
  hgvsc: ENST00000475264.1:c.11G>C
  hgvsp: ENSP00000419696.1:p.Gln4His
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000478375
  gene symbol: TFAP2A
  hgvsc: ENST00000478375.1:n.297G>C
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000462727
  gene symbol: TFAP2A
  hgvsc: ENST00000462727.1:n.335G>C
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000473652
  gene symbol: TFAP2A
  hgvsc: ENST00000473652.1:n.351G>C
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000419961
  ensembl transcript: ENST00000498450
  gene symbol: TFAP2A
  hgvsc: ENST00000498450.1:c.52-3240G>C
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000417495
  ensembl transcript: ENST00000466073
  gene symbol: TFAP2A
  hgvsc: ENST00000466073.1:c.297G>C
  hgvsp: ENSP00000417495.1:p.Gln99His
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000420568
  ensembl transcript: ENST00000489805
  gene symbol: TFAP2A
  hgvsc: ENST00000489805.1:c.136G>C
  hgvsp: ENSP00000420568.1:p.Glu46Gln
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000419823
  ensembl transcript: ENST00000488193
  gene symbol: TFAP2A
  hgvsc: ENST00000488193.1:c.160G>C
  hgvsp: ENSP00000419823.1:p.Glu54Gln
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000316516
  ensembl transcript: ENST00000319516
  gene symbol: TFAP2A
  hgvsc: ENST00000319516.4:c.285G>C
  hgvsp: ENSP00000316516.4:p.Gln95His
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000368933
  ensembl transcript: ENST00000379613
  gene symbol: TFAP2A
  hgvsc: ENST00000379613.3:c.303G>C
  hgvsp: ENSP00000368933.3:p.Gln101His
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000229950
  ensembl transcript: ENST00000420777
  gene symbol: TFAP2A-AS1
  hgvsc: ENST00000420777.1:n.58+687C>G
  variant of: http://identifiers.org/hgnc/40579
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Gln99His
num of homozygotes: 0
population: Latino
population: East Asian
population: Other
population: European (Finnish)
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: FS

6-10410323-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10410323
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 10410323
    reference: chr 6
allele count: 4
allele frequency: 3.409652726869768e-5
allele num: 117314
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000478375
  gene symbol: TFAP2A
  hgvsc: ENST00000478375.1:n.291C>G
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000419696
  ensembl transcript: ENST00000475264
  gene symbol: TFAP2A
  hgvsc: ENST00000475264.1:c.5C>G
  hgvsp: ENST00000475264.1:c.5C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000316516
  ensembl transcript: ENST00000319516
  gene symbol: TFAP2A
  hgvsc: ENST00000319516.4:c.279C>G
  hgvsp: ENST00000319516.4:c.279C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000474952
  gene symbol: TFAP2A
  hgvsc: ENST00000474952.1:n.723C>G
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000464323
  gene symbol: TFAP2A
  hgvsc: ENST00000464323.1:n.383C>G
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000419961
  ensembl transcript: ENST00000498450
  gene symbol: TFAP2A
  hgvsc: ENST00000498450.1:c.52-3246C>G
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000418391
  ensembl transcript: ENST00000465858
  gene symbol: TFAP2A
  hgvsc: ENST00000465858.1:c.426C>G
  hgvsp: ENST00000465858.1:c.426C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000368924
  ensembl transcript: ENST00000379604
  gene symbol: TFAP2A
  hgvsc: ENST00000379604.2:c.291C>G
  hgvsp: ENST00000379604.2:c.291C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000368933
  ensembl transcript: ENST00000379613
  gene symbol: TFAP2A
  hgvsc: ENST00000379613.3:c.297C>G
  hgvsp: ENST00000379613.3:c.297C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000420568
  ensembl transcript: ENST00000489805
  gene symbol: TFAP2A
  hgvsc: ENST00000489805.1:c.130C>G
  hgvsp: ENSP00000420568.1:p.Arg44Gly
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000462727
  gene symbol: TFAP2A
  hgvsc: ENST00000462727.1:n.329C>G
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000418541
  ensembl transcript: ENST00000482890
  gene symbol: TFAP2A
  hgvsc: ENST00000482890.1:c.291C>G
  hgvsp: ENST00000482890.1:c.291C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000473652
  gene symbol: TFAP2A
  hgvsc: ENST00000473652.1:n.345C>G
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000419823
  ensembl transcript: ENST00000488193
  gene symbol: TFAP2A
  hgvsc: ENST00000488193.1:c.154C>G
  hgvsp: ENSP00000419823.1:p.Arg52Gly
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000417495
  ensembl transcript: ENST00000466073
  gene symbol: TFAP2A
  hgvsc: ENST00000466073.1:c.291C>G
  hgvsp: ENST00000466073.1:c.291C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000490875
  gene symbol: TFAP2A
  hgvsc: ENST00000490875.1:n.533C>G
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000497266
  gene symbol: TFAP2A
  hgvsc: ENST00000497266.1:n.262C>G
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000368928
  ensembl transcript: ENST00000379608
  gene symbol: TFAP2A
  hgvsc: ENST00000379608.3:c.273C>G
  hgvsp: ENST00000379608.3:c.273C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000229950
  ensembl transcript: ENST00000420777
  gene symbol: TFAP2A-AS1
  hgvsc: ENST00000420777.1:n.58+693G>C
  variant of: http://identifiers.org/hgnc/40579
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Arg44Gly
num of homozygotes: 0
population: South Asian
population: Other
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ

6-10410324-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10410324
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 10410324
    reference: chr 6
allele count: 6
allele frequency: 5.110906674844117e-5
allele num: 117396
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000464323
  gene symbol: TFAP2A
  hgvsc: ENST00000464323.1:n.382C>T
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000417495
  ensembl transcript: ENST00000466073
  gene symbol: TFAP2A
  hgvsc: ENST00000466073.1:c.290C>T
  hgvsp: ENSP00000417495.1:p.Pro97Leu
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000419961
  ensembl transcript: ENST00000498450
  gene symbol: TFAP2A
  hgvsc: ENST00000498450.1:c.52-3247C>T
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000473652
  gene symbol: TFAP2A
  hgvsc: ENST00000473652.1:n.344C>T
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000474952
  gene symbol: TFAP2A
  hgvsc: ENST00000474952.1:n.722C>T
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000368928
  ensembl transcript: ENST00000379608
  gene symbol: TFAP2A
  hgvsc: ENST00000379608.3:c.272C>T
  hgvsp: ENSP00000368928.3:p.Pro91Leu
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000368924
  ensembl transcript: ENST00000379604
  gene symbol: TFAP2A
  hgvsc: ENST00000379604.2:c.290C>T
  hgvsp: ENSP00000368924.2:p.Pro97Leu
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000418541
  ensembl transcript: ENST00000482890
  gene symbol: TFAP2A
  hgvsc: ENST00000482890.1:c.290C>T
  hgvsp: ENSP00000418541.1:p.Pro97Leu
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000497266
  gene symbol: TFAP2A
  hgvsc: ENST00000497266.1:n.261C>T
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000316516
  ensembl transcript: ENST00000319516
  gene symbol: TFAP2A
  hgvsc: ENST00000319516.4:c.278C>T
  hgvsp: ENSP00000316516.4:p.Pro93Leu
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000420568
  ensembl transcript: ENST00000489805
  gene symbol: TFAP2A
  hgvsc: ENST00000489805.1:c.129C>T
  hgvsp: ENST00000489805.1:c.129C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000419696
  ensembl transcript: ENST00000475264
  gene symbol: TFAP2A
  hgvsc: ENST00000475264.1:c.4C>T
  hgvsp: ENSP00000419696.1:p.Pro2Leu
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000462727
  gene symbol: TFAP2A
  hgvsc: ENST00000462727.1:n.328C>T
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000418391
  ensembl transcript: ENST00000465858
  gene symbol: TFAP2A
  hgvsc: ENST00000465858.1:c.425C>T
  hgvsp: ENSP00000418391.1:p.Pro142Leu
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000490875
  gene symbol: TFAP2A
  hgvsc: ENST00000490875.1:n.532C>T
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000419823
  ensembl transcript: ENST00000488193
  gene symbol: TFAP2A
  hgvsc: ENST00000488193.1:c.153C>T
  hgvsp: ENST00000488193.1:c.153C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000368933
  ensembl transcript: ENST00000379613
  gene symbol: TFAP2A
  hgvsc: ENST00000379613.3:c.296C>T
  hgvsp: ENSP00000368933.3:p.Pro99Leu
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000229950
  ensembl transcript: ENST00000420777
  gene symbol: TFAP2A-AS1
  hgvsc: ENST00000420777.1:n.58+694G>A
  variant of: http://identifiers.org/hgnc/40579
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000478375
  gene symbol: TFAP2A
  hgvsc: ENST00000478375.1:n.290C>T
  variant of: http://identifiers.org/hgnc/11742
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Pro97Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Other
population: African
population: Latino
population: European (Finnish)
reference allele: G
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum

6-10410325-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10410325
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 10410325
    reference: chr 6
allele count: 2
allele frequency: 1.703316356946976e-5
allele num: 117418
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000229950
  ensembl transcript: ENST00000420777
  gene symbol: TFAP2A-AS1
  hgvsc: ENST00000420777.1:n.58+695G>A
  variant of: http://identifiers.org/hgnc/40579
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000478375
  gene symbol: TFAP2A
  hgvsc: ENST00000478375.1:n.289C>T
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000464323
  gene symbol: TFAP2A
  hgvsc: ENST00000464323.1:n.381C>T
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000368928
  ensembl transcript: ENST00000379608
  gene symbol: TFAP2A
  hgvsc: ENST00000379608.3:c.271C>T
  hgvsp: ENSP00000368928.3:p.Pro91Ser
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000417495
  ensembl transcript: ENST00000466073
  gene symbol: TFAP2A
  hgvsc: ENST00000466073.1:c.289C>T
  hgvsp: ENSP00000417495.1:p.Pro97Ser
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000474952
  gene symbol: TFAP2A
  hgvsc: ENST00000474952.1:n.721C>T
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000420568
  ensembl transcript: ENST00000489805
  gene symbol: TFAP2A
  hgvsc: ENST00000489805.1:c.128C>T
  hgvsp: ENSP00000420568.1:p.Ala43Val
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000497266
  gene symbol: TFAP2A
  hgvsc: ENST00000497266.1:n.260C>T
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000490875
  gene symbol: TFAP2A
  hgvsc: ENST00000490875.1:n.531C>T
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000418541
  ensembl transcript: ENST00000482890
  gene symbol: TFAP2A
  hgvsc: ENST00000482890.1:c.289C>T
  hgvsp: ENSP00000418541.1:p.Pro97Ser
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000418391
  ensembl transcript: ENST00000465858
  gene symbol: TFAP2A
  hgvsc: ENST00000465858.1:c.424C>T
  hgvsp: ENSP00000418391.1:p.Pro142Ser
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000473652
  gene symbol: TFAP2A
  hgvsc: ENST00000473652.1:n.343C>T
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000316516
  ensembl transcript: ENST00000319516
  gene symbol: TFAP2A
  hgvsc: ENST00000319516.4:c.277C>T
  hgvsp: ENSP00000316516.4:p.Pro93Ser
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000419696
  ensembl transcript: ENST00000475264
  gene symbol: TFAP2A
  hgvsc: ENST00000475264.1:c.3C>T
  hgvsp: ENSP00000419696.1:p.Pro2Ser
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000419823
  ensembl transcript: ENST00000488193
  gene symbol: TFAP2A
  hgvsc: ENST00000488193.1:c.152C>T
  hgvsp: ENSP00000419823.1:p.Ala51Val
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000368933
  ensembl transcript: ENST00000379613
  gene symbol: TFAP2A
  hgvsc: ENST00000379613.3:c.295C>T
  hgvsp: ENSP00000368933.3:p.Pro99Ser
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000462727
  gene symbol: TFAP2A
  hgvsc: ENST00000462727.1:n.327C>T
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000368924
  ensembl transcript: ENST00000379604
  gene symbol: TFAP2A
  hgvsc: ENST00000379604.2:c.289C>T
  hgvsp: ENSP00000368924.2:p.Pro97Ser
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000419961
  ensembl transcript: ENST00000498450
  gene symbol: TFAP2A
  hgvsc: ENST00000498450.1:c.52-3248C>T
  variant of: http://identifiers.org/hgnc/11742
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Pro97Ser
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Other
population: African
population: South Asian
population: European (Non-Finnish)
population: Latino
reference allele: G
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff

6-10410341-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10410341
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 10410341
    reference: chr 6
allele count: 4
allele frequency: 3.409129649200559e-5
allele num: 117332
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000474952
  gene symbol: TFAP2A
  hgvsc: ENST00000474952.1:n.705G>A
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000418391
  ensembl transcript: ENST00000465858
  gene symbol: TFAP2A
  hgvsc: ENST00000465858.1:c.408G>A
  hgvsp: ENST00000465858.1:c.408G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000419823
  ensembl transcript: ENST00000488193
  gene symbol: TFAP2A
  hgvsc: ENST00000488193.1:c.136G>A
  hgvsp: ENSP00000419823.1:p.Ala46Thr
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000462727
  gene symbol: TFAP2A
  hgvsc: ENST00000462727.1:n.311G>A
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000368928
  ensembl transcript: ENST00000379608
  gene symbol: TFAP2A
  hgvsc: ENST00000379608.3:c.255G>A
  hgvsp: ENST00000379608.3:c.255G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000419961
  ensembl transcript: ENST00000498450
  gene symbol: TFAP2A
  hgvsc: ENST00000498450.1:c.52-3264G>A
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000420568
  ensembl transcript: ENST00000489805
  gene symbol: TFAP2A
  hgvsc: ENST00000489805.1:c.112G>A
  hgvsp: ENSP00000420568.1:p.Ala38Thr
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000368933
  ensembl transcript: ENST00000379613
  gene symbol: TFAP2A
  hgvsc: ENST00000379613.3:c.279G>A
  hgvsp: ENST00000379613.3:c.279G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000418541
  ensembl transcript: ENST00000482890
  gene symbol: TFAP2A
  hgvsc: ENST00000482890.1:c.273G>A
  hgvsp: ENST00000482890.1:c.273G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000368924
  ensembl transcript: ENST00000379604
  gene symbol: TFAP2A
  hgvsc: ENST00000379604.2:c.273G>A
  hgvsp: ENST00000379604.2:c.273G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000490875
  gene symbol: TFAP2A
  hgvsc: ENST00000490875.1:n.515G>A
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000417495
  ensembl transcript: ENST00000466073
  gene symbol: TFAP2A
  hgvsc: ENST00000466073.1:c.273G>A
  hgvsp: ENST00000466073.1:c.273G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000464323
  gene symbol: TFAP2A
  hgvsc: ENST00000464323.1:n.365G>A
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000316516
  ensembl transcript: ENST00000319516
  gene symbol: TFAP2A
  hgvsc: ENST00000319516.4:c.261G>A
  hgvsp: ENST00000319516.4:c.261G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000229950
  ensembl transcript: ENST00000420777
  gene symbol: TFAP2A-AS1
  hgvsc: ENST00000420777.1:n.58+711C>T
  variant of: http://identifiers.org/hgnc/40579
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000497266
  gene symbol: TFAP2A
  hgvsc: ENST00000497266.1:n.244G>A
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000478375
  gene symbol: TFAP2A
  hgvsc: ENST00000478375.1:n.273G>A
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000473652
  gene symbol: TFAP2A
  hgvsc: ENST00000473652.1:n.327G>A
  variant of: http://identifiers.org/hgnc/11742
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 39030
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 539
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala46Thr
num of homozygotes: 0
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: QD
site quality: ReadPosRankSum

6-10410347-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10410347
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 10410347
    reference: chr 6
allele count: 1
allele frequency: 8.51643672287515e-6
allele num: 117420
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000497266
  gene symbol: TFAP2A
  hgvsc: ENST00000497266.1:n.238G>A
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000419823
  ensembl transcript: ENST00000488193
  gene symbol: TFAP2A
  hgvsc: ENST00000488193.1:c.130G>A
  hgvsp: ENSP00000419823.1:p.Ala44Thr
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000417495
  ensembl transcript: ENST00000466073
  gene symbol: TFAP2A
  hgvsc: ENST00000466073.1:c.267G>A
  hgvsp: ENST00000466073.1:c.267G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000316516
  ensembl transcript: ENST00000319516
  gene symbol: TFAP2A
  hgvsc: ENST00000319516.4:c.255G>A
  hgvsp: ENST00000319516.4:c.255G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000420568
  ensembl transcript: ENST00000489805
  gene symbol: TFAP2A
  hgvsc: ENST00000489805.1:c.106G>A
  hgvsp: ENSP00000420568.1:p.Ala36Thr
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000464323
  gene symbol: TFAP2A
  hgvsc: ENST00000464323.1:n.359G>A
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000418541
  ensembl transcript: ENST00000482890
  gene symbol: TFAP2A
  hgvsc: ENST00000482890.1:c.267G>A
  hgvsp: ENST00000482890.1:c.267G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000473652
  gene symbol: TFAP2A
  hgvsc: ENST00000473652.1:n.321G>A
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000462727
  gene symbol: TFAP2A
  hgvsc: ENST00000462727.1:n.305G>A
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000478375
  gene symbol: TFAP2A
  hgvsc: ENST00000478375.1:n.267G>A
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000418391
  ensembl transcript: ENST00000465858
  gene symbol: TFAP2A
  hgvsc: ENST00000465858.1:c.402G>A
  hgvsp: ENST00000465858.1:c.402G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000368928
  ensembl transcript: ENST00000379608
  gene symbol: TFAP2A
  hgvsc: ENST00000379608.3:c.249G>A
  hgvsp: ENST00000379608.3:c.249G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000368933
  ensembl transcript: ENST00000379613
  gene symbol: TFAP2A
  hgvsc: ENST00000379613.3:c.273G>A
  hgvsp: ENST00000379613.3:c.273G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000368924
  ensembl transcript: ENST00000379604
  gene symbol: TFAP2A
  hgvsc: ENST00000379604.2:c.267G>A
  hgvsp: ENST00000379604.2:c.267G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000229950
  ensembl transcript: ENST00000420777
  gene symbol: TFAP2A-AS1
  hgvsc: ENST00000420777.1:n.58+717C>T
  variant of: http://identifiers.org/hgnc/40579
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000419961
  ensembl transcript: ENST00000498450
  gene symbol: TFAP2A
  hgvsc: ENST00000498450.1:c.52-3270G>A
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000490875
  gene symbol: TFAP2A
  hgvsc: ENST00000490875.1:n.509G>A
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000474952
  gene symbol: TFAP2A
  hgvsc: ENST00000474952.1:n.699G>A
  variant of: http://identifiers.org/hgnc/11742
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11849
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala44Thr
num of homozygotes: 0
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: MQ

6-10410356-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10410356
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 10410356
    reference: chr 6
allele count: 2
allele frequency: 1.69468546637744e-5
allele num: 118016
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000478375
  gene symbol: TFAP2A
  hgvsc: ENST00000478375.1:n.258C>T
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000497266
  gene symbol: TFAP2A
  hgvsc: ENST00000497266.1:n.229C>T
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000473652
  gene symbol: TFAP2A
  hgvsc: ENST00000473652.1:n.312C>T
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000229950
  ensembl transcript: ENST00000420777
  gene symbol: TFAP2A-AS1
  hgvsc: ENST00000420777.1:n.58+726G>A
  variant of: http://identifiers.org/hgnc/40579
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000316516
  ensembl transcript: ENST00000319516
  gene symbol: TFAP2A
  hgvsc: ENST00000319516.4:c.246C>T
  hgvsp: ENST00000319516.4:c.246C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000462727
  gene symbol: TFAP2A
  hgvsc: ENST00000462727.1:n.296C>T
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000368928
  ensembl transcript: ENST00000379608
  gene symbol: TFAP2A
  hgvsc: ENST00000379608.3:c.240C>T
  hgvsp: ENST00000379608.3:c.240C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000418391
  ensembl transcript: ENST00000465858
  gene symbol: TFAP2A
  hgvsc: ENST00000465858.1:c.393C>T
  hgvsp: ENST00000465858.1:c.393C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000420568
  ensembl transcript: ENST00000489805
  gene symbol: TFAP2A
  hgvsc: ENST00000489805.1:c.97C>T
  hgvsp: ENSP00000420568.1:p.Arg33Cys
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000419823
  ensembl transcript: ENST00000488193
  gene symbol: TFAP2A
  hgvsc: ENST00000488193.1:c.121C>T
  hgvsp: ENSP00000419823.1:p.Arg41Cys
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000464323
  gene symbol: TFAP2A
  hgvsc: ENST00000464323.1:n.350C>T
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000490875
  gene symbol: TFAP2A
  hgvsc: ENST00000490875.1:n.500C>T
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000368933
  ensembl transcript: ENST00000379613
  gene symbol: TFAP2A
  hgvsc: ENST00000379613.3:c.264C>T
  hgvsp: ENST00000379613.3:c.264C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000418541
  ensembl transcript: ENST00000482890
  gene symbol: TFAP2A
  hgvsc: ENST00000482890.1:c.258C>T
  hgvsp: ENST00000482890.1:c.258C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000419961
  ensembl transcript: ENST00000498450
  gene symbol: TFAP2A
  hgvsc: ENST00000498450.1:c.52-3279C>T
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000368924
  ensembl transcript: ENST00000379604
  gene symbol: TFAP2A
  hgvsc: ENST00000379604.2:c.258C>T
  hgvsp: ENST00000379604.2:c.258C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000474952
  gene symbol: TFAP2A
  hgvsc: ENST00000474952.1:n.690C>T
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000417495
  ensembl transcript: ENST00000466073
  gene symbol: TFAP2A
  hgvsc: ENST00000466073.1:c.258C>T
  hgvsp: ENST00000466073.1:c.258C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11742
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5428
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg41Cys
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: Other
population: European (Finnish)
population: East Asian
population: African
population: South Asian
reference allele: G
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: DP

6-10410356-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10410356
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 10410356
    reference: chr 6
allele count: 1
allele frequency: 8.473427331887202e-6
allele num: 118016
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000464323
  gene symbol: TFAP2A
  hgvsc: ENST00000464323.1:n.350C>A
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000418541
  ensembl transcript: ENST00000482890
  gene symbol: TFAP2A
  hgvsc: ENST00000482890.1:c.258C>A
  hgvsp: ENSP00000418541.1:p.His86Gln
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000490875
  gene symbol: TFAP2A
  hgvsc: ENST00000490875.1:n.500C>A
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000418391
  ensembl transcript: ENST00000465858
  gene symbol: TFAP2A
  hgvsc: ENST00000465858.1:c.393C>A
  hgvsp: ENSP00000418391.1:p.His131Gln
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000497266
  gene symbol: TFAP2A
  hgvsc: ENST00000497266.1:n.229C>A
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000420568
  ensembl transcript: ENST00000489805
  gene symbol: TFAP2A
  hgvsc: ENST00000489805.1:c.97C>A
  hgvsp: ENSP00000420568.1:p.Arg33Ser
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000419961
  ensembl transcript: ENST00000498450
  gene symbol: TFAP2A
  hgvsc: ENST00000498450.1:c.52-3279C>A
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000462727
  gene symbol: TFAP2A
  hgvsc: ENST00000462727.1:n.296C>A
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000419823
  ensembl transcript: ENST00000488193
  gene symbol: TFAP2A
  hgvsc: ENST00000488193.1:c.121C>A
  hgvsp: ENSP00000419823.1:p.Arg41Ser
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000316516
  ensembl transcript: ENST00000319516
  gene symbol: TFAP2A
  hgvsc: ENST00000319516.4:c.246C>A
  hgvsp: ENSP00000316516.4:p.His82Gln
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000368924
  ensembl transcript: ENST00000379604
  gene symbol: TFAP2A
  hgvsc: ENST00000379604.2:c.258C>A
  hgvsp: ENSP00000368924.2:p.His86Gln
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000417495
  ensembl transcript: ENST00000466073
  gene symbol: TFAP2A
  hgvsc: ENST00000466073.1:c.258C>A
  hgvsp: ENSP00000417495.1:p.His86Gln
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000229950
  ensembl transcript: ENST00000420777
  gene symbol: TFAP2A-AS1
  hgvsc: ENST00000420777.1:n.58+726G>T
  variant of: http://identifiers.org/hgnc/40579
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000368928
  ensembl transcript: ENST00000379608
  gene symbol: TFAP2A
  hgvsc: ENST00000379608.3:c.240C>A
  hgvsp: ENSP00000368928.3:p.His80Gln
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000473652
  gene symbol: TFAP2A
  hgvsc: ENST00000473652.1:n.312C>A
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000478375
  gene symbol: TFAP2A
  hgvsc: ENST00000478375.1:n.258C>A
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000368933
  ensembl transcript: ENST00000379613
  gene symbol: TFAP2A
  hgvsc: ENST00000379613.3:c.264C>A
  hgvsp: ENSP00000368933.3:p.His88Gln
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000474952
  gene symbol: TFAP2A
  hgvsc: ENST00000474952.1:n.690C>A
  variant of: http://identifiers.org/hgnc/11742
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5428
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.His86Gln
num of homozygotes: 0
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Latino
reference allele: G
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD

6-10410362-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10410362
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 10410362
    reference: chr 6
allele count: 1
allele frequency: 8.456087537418188e-6
allele num: 118258
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000490875
  gene symbol: TFAP2A
  hgvsc: ENST00000490875.1:n.494C>T
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000418391
  ensembl transcript: ENST00000465858
  gene symbol: TFAP2A
  hgvsc: ENST00000465858.1:c.387C>T
  hgvsp: ENST00000465858.1:c.387C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000418541
  ensembl transcript: ENST00000482890
  gene symbol: TFAP2A
  hgvsc: ENST00000482890.1:c.252C>T
  hgvsp: ENST00000482890.1:c.252C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000420568
  ensembl transcript: ENST00000489805
  gene symbol: TFAP2A
  hgvsc: ENST00000489805.1:c.91C>T
  hgvsp: ENSP00000420568.1:p.Pro31Ser
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000497266
  gene symbol: TFAP2A
  hgvsc: ENST00000497266.1:n.223C>T
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000464323
  gene symbol: TFAP2A
  hgvsc: ENST00000464323.1:n.344C>T
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000368928
  ensembl transcript: ENST00000379608
  gene symbol: TFAP2A
  hgvsc: ENST00000379608.3:c.234C>T
  hgvsp: ENST00000379608.3:c.234C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000368924
  ensembl transcript: ENST00000379604
  gene symbol: TFAP2A
  hgvsc: ENST00000379604.2:c.252C>T
  hgvsp: ENST00000379604.2:c.252C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000474952
  gene symbol: TFAP2A
  hgvsc: ENST00000474952.1:n.684C>T
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000316516
  ensembl transcript: ENST00000319516
  gene symbol: TFAP2A
  hgvsc: ENST00000319516.4:c.240C>T
  hgvsp: ENST00000319516.4:c.240C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000419823
  ensembl transcript: ENST00000488193
  gene symbol: TFAP2A
  hgvsc: ENST00000488193.1:c.115C>T
  hgvsp: ENSP00000419823.1:p.Pro39Ser
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000417495
  ensembl transcript: ENST00000466073
  gene symbol: TFAP2A
  hgvsc: ENST00000466073.1:c.252C>T
  hgvsp: ENST00000466073.1:c.252C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000229950
  ensembl transcript: ENST00000420777
  gene symbol: TFAP2A-AS1
  hgvsc: ENST00000420777.1:n.58+732G>A
  variant of: http://identifiers.org/hgnc/40579
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000478375
  gene symbol: TFAP2A
  hgvsc: ENST00000478375.1:n.252C>T
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000473652
  gene symbol: TFAP2A
  hgvsc: ENST00000473652.1:n.306C>T
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000462727
  gene symbol: TFAP2A
  hgvsc: ENST00000462727.1:n.290C>T
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000368933
  ensembl transcript: ENST00000379613
  gene symbol: TFAP2A
  hgvsc: ENST00000379613.3:c.258C>T
  hgvsp: ENST00000379613.3:c.258C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000419961
  ensembl transcript: ENST00000498450
  gene symbol: TFAP2A
  hgvsc: ENST00000498450.1:c.52-3285C>T
  variant of: http://identifiers.org/hgnc/11742
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Pro39Ser
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Other
population: African
population: European (Finnish)
population: Latino
reference allele: G
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: MQ

6-10410363-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10410363
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 10410363
    reference: chr 6
allele count: 8
allele frequency: 6.761896712027724e-5
allele num: 118310
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000368924
  ensembl transcript: ENST00000379604
  gene symbol: TFAP2A
  hgvsc: ENST00000379604.2:c.251C>T
  hgvsp: ENSP00000368924.2:p.Pro84Leu
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000473652
  gene symbol: TFAP2A
  hgvsc: ENST00000473652.1:n.305C>T
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000420568
  ensembl transcript: ENST00000489805
  gene symbol: TFAP2A
  hgvsc: ENST00000489805.1:c.90C>T
  hgvsp: ENST00000489805.1:c.90C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000418541
  ensembl transcript: ENST00000482890
  gene symbol: TFAP2A
  hgvsc: ENST00000482890.1:c.251C>T
  hgvsp: ENSP00000418541.1:p.Pro84Leu
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000462727
  gene symbol: TFAP2A
  hgvsc: ENST00000462727.1:n.289C>T
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000316516
  ensembl transcript: ENST00000319516
  gene symbol: TFAP2A
  hgvsc: ENST00000319516.4:c.239C>T
  hgvsp: ENSP00000316516.4:p.Pro80Leu
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000368933
  ensembl transcript: ENST00000379613
  gene symbol: TFAP2A
  hgvsc: ENST00000379613.3:c.257C>T
  hgvsp: ENSP00000368933.3:p.Pro86Leu
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000419823
  ensembl transcript: ENST00000488193
  gene symbol: TFAP2A
  hgvsc: ENST00000488193.1:c.114C>T
  hgvsp: ENST00000488193.1:c.114C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000478375
  gene symbol: TFAP2A
  hgvsc: ENST00000478375.1:n.251C>T
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000474952
  gene symbol: TFAP2A
  hgvsc: ENST00000474952.1:n.683C>T
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000417495
  ensembl transcript: ENST00000466073
  gene symbol: TFAP2A
  hgvsc: ENST00000466073.1:c.251C>T
  hgvsp: ENSP00000417495.1:p.Pro84Leu
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000368928
  ensembl transcript: ENST00000379608
  gene symbol: TFAP2A
  hgvsc: ENST00000379608.3:c.233C>T
  hgvsp: ENSP00000368928.3:p.Pro78Leu
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000418391
  ensembl transcript: ENST00000465858
  gene symbol: TFAP2A
  hgvsc: ENST00000465858.1:c.386C>T
  hgvsp: ENSP00000418391.1:p.Pro129Leu
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000419961
  ensembl transcript: ENST00000498450
  gene symbol: TFAP2A
  hgvsc: ENST00000498450.1:c.52-3286C>T
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000497266
  gene symbol: TFAP2A
  hgvsc: ENST00000497266.1:n.222C>T
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000490875
  gene symbol: TFAP2A
  hgvsc: ENST00000490875.1:n.493C>T
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000464323
  gene symbol: TFAP2A
  hgvsc: ENST00000464323.1:n.343C>T
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000229950
  ensembl transcript: ENST00000420777
  gene symbol: TFAP2A-AS1
  hgvsc: ENST00000420777.1:n.58+733G>A
  variant of: http://identifiers.org/hgnc/40579
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro84Leu
num of homozygotes: 0
population: South Asian
population: East Asian
population: Other
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD

6-10410374-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10410374
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 10410374
    reference: chr 6
allele count: 9
allele frequency: 7.581501137225171e-5
allele num: 118710
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000474952
  gene symbol: TFAP2A
  hgvsc: ENST00000474952.1:n.672C>T
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000368933
  ensembl transcript: ENST00000379613
  gene symbol: TFAP2A
  hgvsc: ENST00000379613.3:c.246C>T
  hgvsp: ENST00000379613.3:c.246C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000473652
  gene symbol: TFAP2A
  hgvsc: ENST00000473652.1:n.297-3C>T
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000316516
  ensembl transcript: ENST00000319516
  gene symbol: TFAP2A
  hgvsc: ENST00000319516.4:c.228C>T
  hgvsp: ENST00000319516.4:c.228C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000419961
  ensembl transcript: ENST00000498450
  gene symbol: TFAP2A
  hgvsc: ENST00000498450.1:c.52-3297C>T
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000420568
  ensembl transcript: ENST00000489805
  gene symbol: TFAP2A
  hgvsc: ENST00000489805.1:c.82-3C>T
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000464323
  gene symbol: TFAP2A
  hgvsc: ENST00000464323.1:n.332C>T
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000490875
  gene symbol: TFAP2A
  hgvsc: ENST00000490875.1:n.482C>T
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000419823
  ensembl transcript: ENST00000488193
  gene symbol: TFAP2A
  hgvsc: ENST00000488193.1:c.106-3C>T
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000368928
  ensembl transcript: ENST00000379608
  gene symbol: TFAP2A
  hgvsc: ENST00000379608.3:c.222C>T
  hgvsp: ENST00000379608.3:c.222C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000418541
  ensembl transcript: ENST00000482890
  gene symbol: TFAP2A
  hgvsc: ENST00000482890.1:c.240C>T
  hgvsp: ENST00000482890.1:c.240C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000368924
  ensembl transcript: ENST00000379604
  gene symbol: TFAP2A
  hgvsc: ENST00000379604.2:c.240C>T
  hgvsp: ENST00000379604.2:c.240C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000229950
  ensembl transcript: ENST00000420777
  gene symbol: TFAP2A-AS1
  hgvsc: ENST00000420777.1:n.58+744G>A
  variant of: http://identifiers.org/hgnc/40579
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000478375
  gene symbol: TFAP2A
  hgvsc: ENST00000478375.1:n.240C>T
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000462727
  gene symbol: TFAP2A
  hgvsc: ENST00000462727.1:n.278C>T
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000497266
  gene symbol: TFAP2A
  hgvsc: ENST00000497266.1:n.214-3C>T
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000418391
  ensembl transcript: ENST00000465858
  gene symbol: TFAP2A
  hgvsc: ENST00000465858.1:c.375C>T
  hgvsp: ENST00000465858.1:c.375C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000417495
  ensembl transcript: ENST00000466073
  gene symbol: TFAP2A
  hgvsc: ENST00000466073.1:c.240C>T
  hgvsp: ENST00000466073.1:c.240C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11742
canonical: false
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: c.106-3C>T
num of homozygotes: 0
population: South Asian
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: Latino
population: East Asian
reference allele: G
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: MQ
site quality: ClippingRankSum

6-10410383-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10410383
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 10410383
    reference: chr 6
allele count: 1
allele frequency: 8.404915194405689e-6
allele num: 118978
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000478375
  gene symbol: TFAP2A
  hgvsc: ENST00000478375.1:n.231C>G
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000497266
  gene symbol: TFAP2A
  hgvsc: ENST00000497266.1:n.214-12C>G
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000473652
  gene symbol: TFAP2A
  hgvsc: ENST00000473652.1:n.297-12C>G
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000316516
  ensembl transcript: ENST00000319516
  gene symbol: TFAP2A
  hgvsc: ENST00000319516.4:c.219C>G
  hgvsp: ENSP00000316516.4:p.Asn73Lys
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000419823
  ensembl transcript: ENST00000488193
  gene symbol: TFAP2A
  hgvsc: ENST00000488193.1:c.106-12C>G
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000419961
  ensembl transcript: ENST00000498450
  gene symbol: TFAP2A
  hgvsc: ENST00000498450.1:c.52-3306C>G
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000368928
  ensembl transcript: ENST00000379608
  gene symbol: TFAP2A
  hgvsc: ENST00000379608.3:c.213C>G
  hgvsp: ENSP00000368928.3:p.Asn71Lys
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000229950
  ensembl transcript: ENST00000420777
  gene symbol: TFAP2A-AS1
  hgvsc: ENST00000420777.1:n.58+753G>C
  variant of: http://identifiers.org/hgnc/40579
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000368933
  ensembl transcript: ENST00000379613
  gene symbol: TFAP2A
  hgvsc: ENST00000379613.3:c.237C>G
  hgvsp: ENSP00000368933.3:p.Asn79Lys
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000418541
  ensembl transcript: ENST00000482890
  gene symbol: TFAP2A
  hgvsc: ENST00000482890.1:c.231C>G
  hgvsp: ENSP00000418541.1:p.Asn77Lys
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000420568
  ensembl transcript: ENST00000489805
  gene symbol: TFAP2A
  hgvsc: ENST00000489805.1:c.82-12C>G
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000490875
  gene symbol: TFAP2A
  hgvsc: ENST00000490875.1:n.473C>G
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000418391
  ensembl transcript: ENST00000465858
  gene symbol: TFAP2A
  hgvsc: ENST00000465858.1:c.366C>G
  hgvsp: ENSP00000418391.1:p.Asn122Lys
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000417495
  ensembl transcript: ENST00000466073
  gene symbol: TFAP2A
  hgvsc: ENST00000466073.1:c.231C>G
  hgvsp: ENSP00000417495.1:p.Asn77Lys
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000368924
  ensembl transcript: ENST00000379604
  gene symbol: TFAP2A
  hgvsc: ENST00000379604.2:c.231C>G
  hgvsp: ENSP00000368924.2:p.Asn77Lys
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000462727
  gene symbol: TFAP2A
  hgvsc: ENST00000462727.1:n.269C>G
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000474952
  gene symbol: TFAP2A
  hgvsc: ENST00000474952.1:n.663C>G
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000464323
  gene symbol: TFAP2A
  hgvsc: ENST00000464323.1:n.323C>G
  variant of: http://identifiers.org/hgnc/11742
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 959
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asn77Lys
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: South Asian
population: Latino
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: QD

6-10410392-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10410392
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 10410392
    reference: chr 6
allele count: 1
allele frequency: 8.39560070523046e-6
allele num: 119110
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000368924
  ensembl transcript: ENST00000379604
  gene symbol: TFAP2A
  hgvsc: ENST00000379604.2:c.222C>G
  hgvsp: ENST00000379604.2:c.222C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000419823
  ensembl transcript: ENST00000488193
  gene symbol: TFAP2A
  hgvsc: ENST00000488193.1:c.106-21C>G
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000418541
  ensembl transcript: ENST00000482890
  gene symbol: TFAP2A
  hgvsc: ENST00000482890.1:c.222C>G
  hgvsp: ENST00000482890.1:c.222C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000418391
  ensembl transcript: ENST00000465858
  gene symbol: TFAP2A
  hgvsc: ENST00000465858.1:c.357C>G
  hgvsp: ENST00000465858.1:c.357C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000420568
  ensembl transcript: ENST00000489805
  gene symbol: TFAP2A
  hgvsc: ENST00000489805.1:c.82-21C>G
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000417495
  ensembl transcript: ENST00000466073
  gene symbol: TFAP2A
  hgvsc: ENST00000466073.1:c.222C>G
  hgvsp: ENST00000466073.1:c.222C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000368933
  ensembl transcript: ENST00000379613
  gene symbol: TFAP2A
  hgvsc: ENST00000379613.3:c.228C>G
  hgvsp: ENST00000379613.3:c.228C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000316516
  ensembl transcript: ENST00000319516
  gene symbol: TFAP2A
  hgvsc: ENST00000319516.4:c.210C>G
  hgvsp: ENST00000319516.4:c.210C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000462727
  gene symbol: TFAP2A
  hgvsc: ENST00000462727.1:n.260C>G
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000229950
  ensembl transcript: ENST00000420777
  gene symbol: TFAP2A-AS1
  hgvsc: ENST00000420777.1:n.58+762G>C
  variant of: http://identifiers.org/hgnc/40579
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000474952
  gene symbol: TFAP2A
  hgvsc: ENST00000474952.1:n.654C>G
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000497266
  gene symbol: TFAP2A
  hgvsc: ENST00000497266.1:n.214-21C>G
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000368928
  ensembl transcript: ENST00000379608
  gene symbol: TFAP2A
  hgvsc: ENST00000379608.3:c.204C>G
  hgvsp: ENST00000379608.3:c.204C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000464323
  gene symbol: TFAP2A
  hgvsc: ENST00000464323.1:n.314C>G
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000478375
  gene symbol: TFAP2A
  hgvsc: ENST00000478375.1:n.222C>G
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000490875
  gene symbol: TFAP2A
  hgvsc: ENST00000490875.1:n.464C>G
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000473652
  gene symbol: TFAP2A
  hgvsc: ENST00000473652.1:n.297-21C>G
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000419961
  ensembl transcript: ENST00000498450
  gene symbol: TFAP2A
  hgvsc: ENST00000498450.1:c.52-3315C>G
  variant of: http://identifiers.org/hgnc/11742
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 39397
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5593
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser74Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Other
population: Latino
population: South Asian
population: African
reference allele: G
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD

6-10410394-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10410394
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 10410394
    reference: chr 6
allele count: 1
allele frequency: 8.395882659143956e-6
allele num: 119106
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000490875
  gene symbol: TFAP2A
  hgvsc: ENST00000490875.1:n.462T>A
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000462727
  gene symbol: TFAP2A
  hgvsc: ENST00000462727.1:n.258T>A
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000418391
  ensembl transcript: ENST00000465858
  gene symbol: TFAP2A
  hgvsc: ENST00000465858.1:c.355T>A
  hgvsp: ENSP00000418391.1:p.Ser119Thr
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000368933
  ensembl transcript: ENST00000379613
  gene symbol: TFAP2A
  hgvsc: ENST00000379613.3:c.226T>A
  hgvsp: ENSP00000368933.3:p.Ser76Thr
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000368924
  ensembl transcript: ENST00000379604
  gene symbol: TFAP2A
  hgvsc: ENST00000379604.2:c.220T>A
  hgvsp: ENSP00000368924.2:p.Ser74Thr
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000478375
  gene symbol: TFAP2A
  hgvsc: ENST00000478375.1:n.220T>A
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000497266
  gene symbol: TFAP2A
  hgvsc: ENST00000497266.1:n.214-23T>A
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000368928
  ensembl transcript: ENST00000379608
  gene symbol: TFAP2A
  hgvsc: ENST00000379608.3:c.202T>A
  hgvsp: ENSP00000368928.3:p.Ser68Thr
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000464323
  gene symbol: TFAP2A
  hgvsc: ENST00000464323.1:n.312T>A
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000419961
  ensembl transcript: ENST00000498450
  gene symbol: TFAP2A
  hgvsc: ENST00000498450.1:c.52-3317T>A
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000417495
  ensembl transcript: ENST00000466073
  gene symbol: TFAP2A
  hgvsc: ENST00000466073.1:c.220T>A
  hgvsp: ENSP00000417495.1:p.Ser74Thr
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000419823
  ensembl transcript: ENST00000488193
  gene symbol: TFAP2A
  hgvsc: ENST00000488193.1:c.106-23T>A
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000229950
  ensembl transcript: ENST00000420777
  gene symbol: TFAP2A-AS1
  hgvsc: ENST00000420777.1:n.58+764A>T
  variant of: http://identifiers.org/hgnc/40579
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000418541
  ensembl transcript: ENST00000482890
  gene symbol: TFAP2A
  hgvsc: ENST00000482890.1:c.220T>A
  hgvsp: ENSP00000418541.1:p.Ser74Thr
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000316516
  ensembl transcript: ENST00000319516
  gene symbol: TFAP2A
  hgvsc: ENST00000319516.4:c.208T>A
  hgvsp: ENSP00000316516.4:p.Ser70Thr
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000474952
  gene symbol: TFAP2A
  hgvsc: ENST00000474952.1:n.652T>A
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000420568
  ensembl transcript: ENST00000489805
  gene symbol: TFAP2A
  hgvsc: ENST00000489805.1:c.82-23T>A
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000473652
  gene symbol: TFAP2A
  hgvsc: ENST00000473652.1:n.297-23T>A
  variant of: http://identifiers.org/hgnc/11742
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 696
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 963
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser74Thr
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: East Asian
population: South Asian
reference allele: A
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum

6-10410400-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10410400
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 10410400
    reference: chr 6
allele count: 1
allele frequency: 8.393627557957998e-6
allele num: 119138
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000497266
  gene symbol: TFAP2A
  hgvsc: ENST00000497266.1:n.214-29C>A
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000474952
  gene symbol: TFAP2A
  hgvsc: ENST00000474952.1:n.646C>A
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000419823
  ensembl transcript: ENST00000488193
  gene symbol: TFAP2A
  hgvsc: ENST00000488193.1:c.106-29C>A
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000229950
  ensembl transcript: ENST00000420777
  gene symbol: TFAP2A-AS1
  hgvsc: ENST00000420777.1:n.58+770G>T
  variant of: http://identifiers.org/hgnc/40579
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000316516
  ensembl transcript: ENST00000319516
  gene symbol: TFAP2A
  hgvsc: ENST00000319516.4:c.202C>A
  hgvsp: ENSP00000316516.4:p.Pro68Thr
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000368924
  ensembl transcript: ENST00000379604
  gene symbol: TFAP2A
  hgvsc: ENST00000379604.2:c.214C>A
  hgvsp: ENSP00000368924.2:p.Pro72Thr
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000464323
  gene symbol: TFAP2A
  hgvsc: ENST00000464323.1:n.306C>A
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000417495
  ensembl transcript: ENST00000466073
  gene symbol: TFAP2A
  hgvsc: ENST00000466073.1:c.214C>A
  hgvsp: ENSP00000417495.1:p.Pro72Thr
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000418391
  ensembl transcript: ENST00000465858
  gene symbol: TFAP2A
  hgvsc: ENST00000465858.1:c.349C>A
  hgvsp: ENSP00000418391.1:p.Pro117Thr
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000420568
  ensembl transcript: ENST00000489805
  gene symbol: TFAP2A
  hgvsc: ENST00000489805.1:c.82-29C>A
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000368928
  ensembl transcript: ENST00000379608
  gene symbol: TFAP2A
  hgvsc: ENST00000379608.3:c.196C>A
  hgvsp: ENSP00000368928.3:p.Pro66Thr
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000462727
  gene symbol: TFAP2A
  hgvsc: ENST00000462727.1:n.252C>A
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000490875
  gene symbol: TFAP2A
  hgvsc: ENST00000490875.1:n.456C>A
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000368933
  ensembl transcript: ENST00000379613
  gene symbol: TFAP2A
  hgvsc: ENST00000379613.3:c.220C>A
  hgvsp: ENSP00000368933.3:p.Pro74Thr
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000418541
  ensembl transcript: ENST00000482890
  gene symbol: TFAP2A
  hgvsc: ENST00000482890.1:c.214C>A
  hgvsp: ENSP00000418541.1:p.Pro72Thr
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000478375
  gene symbol: TFAP2A
  hgvsc: ENST00000478375.1:n.214C>A
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000473652
  gene symbol: TFAP2A
  hgvsc: ENST00000473652.1:n.297-29C>A
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000419961
  ensembl transcript: ENST00000498450
  gene symbol: TFAP2A
  hgvsc: ENST00000498450.1:c.52-3323C>A
  variant of: http://identifiers.org/hgnc/11742
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 996
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro72Thr
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: European (Non-Finnish)
population: Other
population: Latino
population: East Asian
reference allele: G
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: DP

6-10410401-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10410401
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 10410401
    reference: chr 6
allele count: 1
allele frequency: 8.395177809866013e-6
allele num: 119116
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000474952
  gene symbol: TFAP2A
  hgvsc: ENST00000474952.1:n.645T>A
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000462727
  gene symbol: TFAP2A
  hgvsc: ENST00000462727.1:n.251T>A
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000418541
  ensembl transcript: ENST00000482890
  gene symbol: TFAP2A
  hgvsc: ENST00000482890.1:c.213T>A
  hgvsp: ENSP00000418541.1:p.Asp71Glu
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000473652
  gene symbol: TFAP2A
  hgvsc: ENST00000473652.1:n.297-30T>A
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000417495
  ensembl transcript: ENST00000466073
  gene symbol: TFAP2A
  hgvsc: ENST00000466073.1:c.213T>A
  hgvsp: ENSP00000417495.1:p.Asp71Glu
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000368924
  ensembl transcript: ENST00000379604
  gene symbol: TFAP2A
  hgvsc: ENST00000379604.2:c.213T>A
  hgvsp: ENSP00000368924.2:p.Asp71Glu
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000316516
  ensembl transcript: ENST00000319516
  gene symbol: TFAP2A
  hgvsc: ENST00000319516.4:c.201T>A
  hgvsp: ENSP00000316516.4:p.Asp67Glu
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000368928
  ensembl transcript: ENST00000379608
  gene symbol: TFAP2A
  hgvsc: ENST00000379608.3:c.195T>A
  hgvsp: ENSP00000368928.3:p.Asp65Glu
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000490875
  gene symbol: TFAP2A
  hgvsc: ENST00000490875.1:n.455T>A
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000497266
  gene symbol: TFAP2A
  hgvsc: ENST00000497266.1:n.214-30T>A
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000464323
  gene symbol: TFAP2A
  hgvsc: ENST00000464323.1:n.305T>A
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000418391
  ensembl transcript: ENST00000465858
  gene symbol: TFAP2A
  hgvsc: ENST00000465858.1:c.348T>A
  hgvsp: ENSP00000418391.1:p.Asp116Glu
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000229950
  ensembl transcript: ENST00000420777
  gene symbol: TFAP2A-AS1
  hgvsc: ENST00000420777.1:n.58+771A>T
  variant of: http://identifiers.org/hgnc/40579
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000368933
  ensembl transcript: ENST00000379613
  gene symbol: TFAP2A
  hgvsc: ENST00000379613.3:c.219T>A
  hgvsp: ENSP00000368933.3:p.Asp73Glu
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000419823
  ensembl transcript: ENST00000488193
  gene symbol: TFAP2A
  hgvsc: ENST00000488193.1:c.106-30T>A
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000419961
  ensembl transcript: ENST00000498450
  gene symbol: TFAP2A
  hgvsc: ENST00000498450.1:c.52-3324T>A
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000478375
  gene symbol: TFAP2A
  hgvsc: ENST00000478375.1:n.213T>A
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000420568
  ensembl transcript: ENST00000489805
  gene symbol: TFAP2A
  hgvsc: ENST00000489805.1:c.82-30T>A
  variant of: http://identifiers.org/hgnc/11742
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 922
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Asp71Glu
num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
population: South Asian
reference allele: A
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum

6-10410407-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10410407
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 10410407
    reference: chr 6
allele count: 1
allele frequency: 8.408024618696084e-6
allele num: 118934
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000418391
  ensembl transcript: ENST00000465858
  gene symbol: TFAP2A
  hgvsc: ENST00000465858.1:c.342G>A
  hgvsp: ENST00000465858.1:c.342G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000462727
  gene symbol: TFAP2A
  hgvsc: ENST00000462727.1:n.245G>A
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000418541
  ensembl transcript: ENST00000482890
  gene symbol: TFAP2A
  hgvsc: ENST00000482890.1:c.207G>A
  hgvsp: ENST00000482890.1:c.207G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000474952
  gene symbol: TFAP2A
  hgvsc: ENST00000474952.1:n.639G>A
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000497266
  gene symbol: TFAP2A
  hgvsc: ENST00000497266.1:n.214-36G>A
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000473652
  gene symbol: TFAP2A
  hgvsc: ENST00000473652.1:n.297-36G>A
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000229950
  ensembl transcript: ENST00000420777
  gene symbol: TFAP2A-AS1
  hgvsc: ENST00000420777.1:n.58+777C>T
  variant of: http://identifiers.org/hgnc/40579
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000478375
  gene symbol: TFAP2A
  hgvsc: ENST00000478375.1:n.207G>A
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000419823
  ensembl transcript: ENST00000488193
  gene symbol: TFAP2A
  hgvsc: ENST00000488193.1:c.106-36G>A
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000368933
  ensembl transcript: ENST00000379613
  gene symbol: TFAP2A
  hgvsc: ENST00000379613.3:c.213G>A
  hgvsp: ENST00000379613.3:c.213G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000417495
  ensembl transcript: ENST00000466073
  gene symbol: TFAP2A
  hgvsc: ENST00000466073.1:c.207G>A
  hgvsp: ENST00000466073.1:c.207G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000316516
  ensembl transcript: ENST00000319516
  gene symbol: TFAP2A
  hgvsc: ENST00000319516.4:c.195G>A
  hgvsp: ENST00000319516.4:c.195G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000368928
  ensembl transcript: ENST00000379608
  gene symbol: TFAP2A
  hgvsc: ENST00000379608.3:c.189G>A
  hgvsp: ENST00000379608.3:c.189G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000464323
  gene symbol: TFAP2A
  hgvsc: ENST00000464323.1:n.299G>A
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000368924
  ensembl transcript: ENST00000379604
  gene symbol: TFAP2A
  hgvsc: ENST00000379604.2:c.207G>A
  hgvsp: ENST00000379604.2:c.207G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000419961
  ensembl transcript: ENST00000498450
  gene symbol: TFAP2A
  hgvsc: ENST00000498450.1:c.52-3330G>A
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000490875
  gene symbol: TFAP2A
  hgvsc: ENST00000490875.1:n.449G>A
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000420568
  ensembl transcript: ENST00000489805
  gene symbol: TFAP2A
  hgvsc: ENST00000489805.1:c.82-36G>A
  variant of: http://identifiers.org/hgnc/11742
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser69Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Other
population: African
population: European (Finnish)
population: Latino
reference allele: C
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQ

6-10410412-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10410412
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 10410412
    reference: chr 6
allele count: 1
allele frequency: 8.410004541402452e-6
allele num: 118906
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000418391
  ensembl transcript: ENST00000465858
  gene symbol: TFAP2A
  hgvsc: ENST00000465858.1:c.337C>G
  hgvsp: ENSP00000418391.1:p.Gln113Glu
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000478375
  gene symbol: TFAP2A
  hgvsc: ENST00000478375.1:n.202C>G
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000462727
  gene symbol: TFAP2A
  hgvsc: ENST00000462727.1:n.240C>G
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000316516
  ensembl transcript: ENST00000319516
  gene symbol: TFAP2A
  hgvsc: ENST00000319516.4:c.190C>G
  hgvsp: ENSP00000316516.4:p.Gln64Glu
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000368928
  ensembl transcript: ENST00000379608
  gene symbol: TFAP2A
  hgvsc: ENST00000379608.3:c.184C>G
  hgvsp: ENSP00000368928.3:p.Gln62Glu
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000417495
  ensembl transcript: ENST00000466073
  gene symbol: TFAP2A
  hgvsc: ENST00000466073.1:c.202C>G
  hgvsp: ENSP00000417495.1:p.Gln68Glu
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000418541
  ensembl transcript: ENST00000482890
  gene symbol: TFAP2A
  hgvsc: ENST00000482890.1:c.202C>G
  hgvsp: ENSP00000418541.1:p.Gln68Glu
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000464323
  gene symbol: TFAP2A
  hgvsc: ENST00000464323.1:n.294C>G
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000490875
  gene symbol: TFAP2A
  hgvsc: ENST00000490875.1:n.444C>G
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000474952
  gene symbol: TFAP2A
  hgvsc: ENST00000474952.1:n.634C>G
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000368924
  ensembl transcript: ENST00000379604
  gene symbol: TFAP2A
  hgvsc: ENST00000379604.2:c.202C>G
  hgvsp: ENSP00000368924.2:p.Gln68Glu
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000420568
  ensembl transcript: ENST00000489805
  gene symbol: TFAP2A
  hgvsc: ENST00000489805.1:c.82-41C>G
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000419823
  ensembl transcript: ENST00000488193
  gene symbol: TFAP2A
  hgvsc: ENST00000488193.1:c.106-41C>G
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000497266
  gene symbol: TFAP2A
  hgvsc: ENST00000497266.1:n.214-41C>G
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000368933
  ensembl transcript: ENST00000379613
  gene symbol: TFAP2A
  hgvsc: ENST00000379613.3:c.208C>G
  hgvsp: ENSP00000368933.3:p.Gln70Glu
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000229950
  ensembl transcript: ENST00000420777
  gene symbol: TFAP2A-AS1
  hgvsc: ENST00000420777.1:n.58+782G>C
  variant of: http://identifiers.org/hgnc/40579
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000473652
  gene symbol: TFAP2A
  hgvsc: ENST00000473652.1:n.297-41C>G
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000419961
  ensembl transcript: ENST00000498450
  gene symbol: TFAP2A
  hgvsc: ENST00000498450.1:c.52-3335C>G
  variant of: http://identifiers.org/hgnc/11742
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5664
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1267
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gln68Glu
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: DP

6-10410417-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10410417
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 10410417
    reference: chr 6
allele count: 1
allele frequency: 8.441810599537389e-6
allele num: 118458
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000316516
  ensembl transcript: ENST00000319516
  gene symbol: TFAP2A
  hgvsc: ENST00000319516.4:c.185A>G
  hgvsp: ENSP00000316516.4:p.Tyr62Cys
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000474952
  gene symbol: TFAP2A
  hgvsc: ENST00000474952.1:n.629A>G
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000464323
  gene symbol: TFAP2A
  hgvsc: ENST00000464323.1:n.289A>G
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000368933
  ensembl transcript: ENST00000379613
  gene symbol: TFAP2A
  hgvsc: ENST00000379613.3:c.203A>G
  hgvsp: ENSP00000368933.3:p.Tyr68Cys
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000462727
  gene symbol: TFAP2A
  hgvsc: ENST00000462727.1:n.235A>G
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000418391
  ensembl transcript: ENST00000465858
  gene symbol: TFAP2A
  hgvsc: ENST00000465858.1:c.332A>G
  hgvsp: ENSP00000418391.1:p.Tyr111Cys
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000420568
  ensembl transcript: ENST00000489805
  gene symbol: TFAP2A
  hgvsc: ENST00000489805.1:c.82-46A>G
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000497266
  gene symbol: TFAP2A
  hgvsc: ENST00000497266.1:n.214-46A>G
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000419823
  ensembl transcript: ENST00000488193
  gene symbol: TFAP2A
  hgvsc: ENST00000488193.1:c.106-46A>G
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000419961
  ensembl transcript: ENST00000498450
  gene symbol: TFAP2A
  hgvsc: ENST00000498450.1:c.52-3340A>G
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000418541
  ensembl transcript: ENST00000482890
  gene symbol: TFAP2A
  hgvsc: ENST00000482890.1:c.197A>G
  hgvsp: ENSP00000418541.1:p.Tyr66Cys
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000368924
  ensembl transcript: ENST00000379604
  gene symbol: TFAP2A
  hgvsc: ENST00000379604.2:c.197A>G
  hgvsp: ENSP00000368924.2:p.Tyr66Cys
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000473652
  gene symbol: TFAP2A
  hgvsc: ENST00000473652.1:n.297-46A>G
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000368928
  ensembl transcript: ENST00000379608
  gene symbol: TFAP2A
  hgvsc: ENST00000379608.3:c.179A>G
  hgvsp: ENSP00000368928.3:p.Tyr60Cys
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000229950
  ensembl transcript: ENST00000420777
  gene symbol: TFAP2A-AS1
  hgvsc: ENST00000420777.1:n.58+787T>C
  variant of: http://identifiers.org/hgnc/40579
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000417495
  ensembl transcript: ENST00000466073
  gene symbol: TFAP2A
  hgvsc: ENST00000466073.1:c.197A>G
  hgvsp: ENSP00000417495.1:p.Tyr66Cys
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000478375
  gene symbol: TFAP2A
  hgvsc: ENST00000478375.1:n.197A>G
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000490875
  gene symbol: TFAP2A
  hgvsc: ENST00000490875.1:n.439A>G
  variant of: http://identifiers.org/hgnc/11742
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1030
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Tyr66Cys
num of homozygotes: 0
population: East Asian
population: South Asian
population: Latino
population: African
population: Other
population: European (Non-Finnish)
population: European (Finnish)
reference allele: T
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP

6-10410425-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10410425
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 10410425
    reference: chr 6
allele count: 1
allele frequency: 8.728745504696065e-6
allele num: 114564
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000420568
  ensembl transcript: ENST00000489805
  gene symbol: TFAP2A
  hgvsc: ENST00000489805.1:c.82-54G>A
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000418391
  ensembl transcript: ENST00000465858
  gene symbol: TFAP2A
  hgvsc: ENST00000465858.1:c.324G>A
  hgvsp: ENST00000465858.1:c.324G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000418541
  ensembl transcript: ENST00000482890
  gene symbol: TFAP2A
  hgvsc: ENST00000482890.1:c.189G>A
  hgvsp: ENST00000482890.1:c.189G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000419823
  ensembl transcript: ENST00000488193
  gene symbol: TFAP2A
  hgvsc: ENST00000488193.1:c.106-54G>A
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000368924
  ensembl transcript: ENST00000379604
  gene symbol: TFAP2A
  hgvsc: ENST00000379604.2:c.189G>A
  hgvsp: ENST00000379604.2:c.189G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000497266
  gene symbol: TFAP2A
  hgvsc: ENST00000497266.1:n.214-54G>A
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000316516
  ensembl transcript: ENST00000319516
  gene symbol: TFAP2A
  hgvsc: ENST00000319516.4:c.177G>A
  hgvsp: ENST00000319516.4:c.177G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000473652
  gene symbol: TFAP2A
  hgvsc: ENST00000473652.1:n.297-54G>A
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000478375
  gene symbol: TFAP2A
  hgvsc: ENST00000478375.1:n.189G>A
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000368933
  ensembl transcript: ENST00000379613
  gene symbol: TFAP2A
  hgvsc: ENST00000379613.3:c.195G>A
  hgvsp: ENST00000379613.3:c.195G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000474952
  gene symbol: TFAP2A
  hgvsc: ENST00000474952.1:n.621G>A
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000417495
  ensembl transcript: ENST00000466073
  gene symbol: TFAP2A
  hgvsc: ENST00000466073.1:c.189G>A
  hgvsp: ENST00000466073.1:c.189G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000464323
  gene symbol: TFAP2A
  hgvsc: ENST00000464323.1:n.281G>A
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000368928
  ensembl transcript: ENST00000379608
  gene symbol: TFAP2A
  hgvsc: ENST00000379608.3:c.171G>A
  hgvsp: ENST00000379608.3:c.171G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000490875
  gene symbol: TFAP2A
  hgvsc: ENST00000490875.1:n.431G>A
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000462727
  gene symbol: TFAP2A
  hgvsc: ENST00000462727.1:n.227G>A
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000229950
  ensembl transcript: ENST00000420777
  gene symbol: TFAP2A-AS1
  hgvsc: ENST00000420777.1:n.58+795C>T
  variant of: http://identifiers.org/hgnc/40579
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000419961
  ensembl transcript: ENST00000498450
  gene symbol: TFAP2A
  hgvsc: ENST00000498450.1:c.52-3348G>A
  variant of: http://identifiers.org/hgnc/11742
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1682
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gln63Gln
num of homozygotes: 0
population: Other
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff

6-10410429-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10410429
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 10410429
    reference: chr 6
allele count: 15
allele frequency: 1.375112300837902e-4
allele num: 109082
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000464323
  gene symbol: TFAP2A
  hgvsc: ENST00000464323.1:n.277A>C
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000419823
  ensembl transcript: ENST00000488193
  gene symbol: TFAP2A
  hgvsc: ENST00000488193.1:c.106-58A>C
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000368924
  ensembl transcript: ENST00000379604
  gene symbol: TFAP2A
  hgvsc: ENST00000379604.2:c.185A>C
  hgvsp: ENSP00000368924.2:p.Tyr62Ser
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000497266
  gene symbol: TFAP2A
  hgvsc: ENST00000497266.1:n.214-58A>C
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000418541
  ensembl transcript: ENST00000482890
  gene symbol: TFAP2A
  hgvsc: ENST00000482890.1:c.185A>C
  hgvsp: ENSP00000418541.1:p.Tyr62Ser
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000368928
  ensembl transcript: ENST00000379608
  gene symbol: TFAP2A
  hgvsc: ENST00000379608.3:c.167A>C
  hgvsp: ENSP00000368928.3:p.Tyr56Ser
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000316516
  ensembl transcript: ENST00000319516
  gene symbol: TFAP2A
  hgvsc: ENST00000319516.4:c.173A>C
  hgvsp: ENSP00000316516.4:p.Tyr58Ser
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000478375
  gene symbol: TFAP2A
  hgvsc: ENST00000478375.1:n.185A>C
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000474952
  gene symbol: TFAP2A
  hgvsc: ENST00000474952.1:n.617A>C
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000368933
  ensembl transcript: ENST00000379613
  gene symbol: TFAP2A
  hgvsc: ENST00000379613.3:c.191A>C
  hgvsp: ENSP00000368933.3:p.Tyr64Ser
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000417495
  ensembl transcript: ENST00000466073
  gene symbol: TFAP2A
  hgvsc: ENST00000466073.1:c.185A>C
  hgvsp: ENSP00000417495.1:p.Tyr62Ser
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000418391
  ensembl transcript: ENST00000465858
  gene symbol: TFAP2A
  hgvsc: ENST00000465858.1:c.320A>C
  hgvsp: ENSP00000418391.1:p.Tyr107Ser
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000420568
  ensembl transcript: ENST00000489805
  gene symbol: TFAP2A
  hgvsc: ENST00000489805.1:c.82-58A>C
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000462727
  gene symbol: TFAP2A
  hgvsc: ENST00000462727.1:n.223A>C
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000229950
  ensembl transcript: ENST00000420777
  gene symbol: TFAP2A-AS1
  hgvsc: ENST00000420777.1:n.58+799T>G
  variant of: http://identifiers.org/hgnc/40579
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000490875
  gene symbol: TFAP2A
  hgvsc: ENST00000490875.1:n.427A>C
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000473652
  gene symbol: TFAP2A
  hgvsc: ENST00000473652.1:n.297-58A>C
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000419961
  ensembl transcript: ENST00000498450
  gene symbol: TFAP2A
  hgvsc: ENST00000498450.1:c.52-3352A>C
  variant of: http://identifiers.org/hgnc/11742
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.95to100.00
genotype depth: GenotypeDepth
  all individuals: 593
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1289
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 7.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
hgvs: p.Tyr62Ser
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
population: Other
population: European (Finnish)
population: East Asian
reference allele: T
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD

6-10410434-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10410434
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 10410434
    reference: chr 6
allele count: 89
allele frequency: 1.117136114876738e-3
allele num: 79668
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000464323
  gene symbol: TFAP2A
  hgvsc: ENST00000464323.1:n.272A>C
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000368933
  ensembl transcript: ENST00000379613
  gene symbol: TFAP2A
  hgvsc: ENST00000379613.3:c.186A>C
  hgvsp: ENST00000379613.3:c.186A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000417495
  ensembl transcript: ENST00000466073
  gene symbol: TFAP2A
  hgvsc: ENST00000466073.1:c.180A>C
  hgvsp: ENST00000466073.1:c.180A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000474952
  gene symbol: TFAP2A
  hgvsc: ENST00000474952.1:n.612A>C
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000418391
  ensembl transcript: ENST00000465858
  gene symbol: TFAP2A
  hgvsc: ENST00000465858.1:c.315A>C
  hgvsp: ENST00000465858.1:c.315A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000420568
  ensembl transcript: ENST00000489805
  gene symbol: TFAP2A
  hgvsc: ENST00000489805.1:c.82-63A>C
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000418541
  ensembl transcript: ENST00000482890
  gene symbol: TFAP2A
  hgvsc: ENST00000482890.1:c.180A>C
  hgvsp: ENST00000482890.1:c.180A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000473652
  gene symbol: TFAP2A
  hgvsc: ENST00000473652.1:n.297-63A>C
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000419961
  ensembl transcript: ENST00000498450
  gene symbol: TFAP2A
  hgvsc: ENST00000498450.1:c.52-3357A>C
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000497266
  gene symbol: TFAP2A
  hgvsc: ENST00000497266.1:n.214-63A>C
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000478375
  gene symbol: TFAP2A
  hgvsc: ENST00000478375.1:n.180A>C
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000316516
  ensembl transcript: ENST00000319516
  gene symbol: TFAP2A
  hgvsc: ENST00000319516.4:c.168A>C
  hgvsp: ENST00000319516.4:c.168A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000490875
  gene symbol: TFAP2A
  hgvsc: ENST00000490875.1:n.422A>C
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000368928
  ensembl transcript: ENST00000379608
  gene symbol: TFAP2A
  hgvsc: ENST00000379608.3:c.162A>C
  hgvsp: ENST00000379608.3:c.162A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000368924
  ensembl transcript: ENST00000379604
  gene symbol: TFAP2A
  hgvsc: ENST00000379604.2:c.180A>C
  hgvsp: ENST00000379604.2:c.180A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000229950
  ensembl transcript: ENST00000420777
  gene symbol: TFAP2A-AS1
  hgvsc: ENST00000420777.1:n.58+804T>G
  variant of: http://identifiers.org/hgnc/40579
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000419823
  ensembl transcript: ENST00000488193
  gene symbol: TFAP2A
  hgvsc: ENST00000488193.1:c.106-63A>C
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000462727
  gene symbol: TFAP2A
  hgvsc: ENST00000462727.1:n.218A>C
  variant of: http://identifiers.org/hgnc/11742
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 1495
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1568
  bin: 7.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 1138
  bin: 8.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
hgvs: p.Pro60Pro
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
population: European (Finnish)
population: East Asian
reference allele: T
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS

6-10410435-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10410435
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 10410435
    reference: chr 6
allele count: 1
allele frequency: 8.655310898767484e-6
allele num: 115536
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000418391
  ensembl transcript: ENST00000465858
  gene symbol: TFAP2A
  hgvsc: ENST00000465858.1:c.314C>A
  hgvsp: ENSP00000418391.1:p.Pro105Gln
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000316516
  ensembl transcript: ENST00000319516
  gene symbol: TFAP2A
  hgvsc: ENST00000319516.4:c.167C>A
  hgvsp: ENSP00000316516.4:p.Pro56Gln
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000420568
  ensembl transcript: ENST00000489805
  gene symbol: TFAP2A
  hgvsc: ENST00000489805.1:c.82-64C>A
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000419961
  ensembl transcript: ENST00000498450
  gene symbol: TFAP2A
  hgvsc: ENST00000498450.1:c.52-3358C>A
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000473652
  gene symbol: TFAP2A
  hgvsc: ENST00000473652.1:n.297-64C>A
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000368928
  ensembl transcript: ENST00000379608
  gene symbol: TFAP2A
  hgvsc: ENST00000379608.3:c.161C>A
  hgvsp: ENSP00000368928.3:p.Pro54Gln
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000417495
  ensembl transcript: ENST00000466073
  gene symbol: TFAP2A
  hgvsc: ENST00000466073.1:c.179C>A
  hgvsp: ENSP00000417495.1:p.Pro60Gln
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000368924
  ensembl transcript: ENST00000379604
  gene symbol: TFAP2A
  hgvsc: ENST00000379604.2:c.179C>A
  hgvsp: ENSP00000368924.2:p.Pro60Gln
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000368933
  ensembl transcript: ENST00000379613
  gene symbol: TFAP2A
  hgvsc: ENST00000379613.3:c.185C>A
  hgvsp: ENSP00000368933.3:p.Pro62Gln
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000418541
  ensembl transcript: ENST00000482890
  gene symbol: TFAP2A
  hgvsc: ENST00000482890.1:c.179C>A
  hgvsp: ENSP00000418541.1:p.Pro60Gln
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000497266
  gene symbol: TFAP2A
  hgvsc: ENST00000497266.1:n.214-64C>A
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000478375
  gene symbol: TFAP2A
  hgvsc: ENST00000478375.1:n.179C>A
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000419823
  ensembl transcript: ENST00000488193
  gene symbol: TFAP2A
  hgvsc: ENST00000488193.1:c.106-64C>A
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000229950
  ensembl transcript: ENST00000420777
  gene symbol: TFAP2A-AS1
  hgvsc: ENST00000420777.1:n.58+805G>T
  variant of: http://identifiers.org/hgnc/40579
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000490875
  gene symbol: TFAP2A
  hgvsc: ENST00000490875.1:n.421C>A
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000474952
  gene symbol: TFAP2A
  hgvsc: ENST00000474952.1:n.611C>A
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000462727
  gene symbol: TFAP2A
  hgvsc: ENST00000462727.1:n.217C>A
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000464323
  gene symbol: TFAP2A
  hgvsc: ENST00000464323.1:n.271C>A
  variant of: http://identifiers.org/hgnc/11742
canonical: true
consequence: missense
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 5022
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2642
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1403
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro60Gln
num of homozygotes: 0
population: Other
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: African
population: East Asian
reference allele: G
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: FS

6-10410435-GGGGGGAAGTATGGGGGCTGGAAGTCGGCATT-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10410435
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 10410404
    reference: chr 6
allele count: 294
allele frequency: 2.54466140423764e-3
allele num: 115536
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000420568
  ensembl transcript: ENST00000489805
  gene symbol: TFAP2A
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000368928
  ensembl transcript: ENST00000379608
  gene symbol: TFAP2A
  hgvsp: ENSP00000368928.3:p.Asn44HisfsTer23
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000473652
  gene symbol: TFAP2A
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000474952
  gene symbol: TFAP2A
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000418391
  ensembl transcript: ENST00000465858
  gene symbol: TFAP2A
  hgvsp: ENSP00000418391.1:p.Asn95HisfsTer23
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000490875
  gene symbol: TFAP2A
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000418541
  ensembl transcript: ENST00000482890
  gene symbol: TFAP2A
  hgvsp: ENSP00000418541.1:p.Asn50HisfsTer23
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000316516
  ensembl transcript: ENST00000319516
  gene symbol: TFAP2A
  hgvsp: ENSP00000316516.4:p.Asn46HisfsTer23
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000462727
  gene symbol: TFAP2A
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000478375
  gene symbol: TFAP2A
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000368924
  ensembl transcript: ENST00000379604
  gene symbol: TFAP2A
  hgvsp: ENSP00000368924.2:p.Asn50HisfsTer23
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000417495
  ensembl transcript: ENST00000466073
  gene symbol: TFAP2A
  hgvsp: ENSP00000417495.1:p.Asn50HisfsTer23
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000419961
  ensembl transcript: ENST00000498450
  gene symbol: TFAP2A
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000368933
  ensembl transcript: ENST00000379613
  gene symbol: TFAP2A
  hgvsp: ENSP00000368933.3:p.Asn52HisfsTer23
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000497266
  gene symbol: TFAP2A
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000419823
  ensembl transcript: ENST00000488193
  gene symbol: TFAP2A
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000229950
  ensembl transcript: ENST00000420777
  gene symbol: TFAP2A-AS1
  variant of: http://identifiers.org/hgnc/40579
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000464323
  gene symbol: TFAP2A
  variant of: http://identifiers.org/hgnc/11742
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 973
  bin: 8.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 1110
  bin: 8.25e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 810
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3507
  bin: 3.75e1
  variant carriers: 35
genotype depth: GenotypeDepth
  all individuals: 6900
  bin: 2.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 1403
  bin: 6.75e1
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 814
  bin: 9.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 5022
  bin: 3.25e1
  variant carriers: 20
genotype quality: GenotypeQuality
hgvs: p.Asn50HisfsTer23
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: East Asian
population: African
population: Other
population: South Asian
reference allele: GGGGGGAAGTATGGGGGCTGGAAGTCGGCATT
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum

6-10410436-GGGGGAAGTATGGGGGCTGGAAGTCGGCATT-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10410436
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 10410406
    reference: chr 6
allele count: 52
allele frequency: 4.603806994245241e-4
allele num: 112950
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000478375
  gene symbol: TFAP2A
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000462727
  gene symbol: TFAP2A
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000368933
  ensembl transcript: ENST00000379613
  gene symbol: TFAP2A
  hgvsp: ENSP00000368933.3:p.Asn52_Pro61del
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000229950
  ensembl transcript: ENST00000420777
  gene symbol: TFAP2A-AS1
  variant of: http://identifiers.org/hgnc/40579
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000418391
  ensembl transcript: ENST00000465858
  gene symbol: TFAP2A
  hgvsp: ENSP00000418391.1:p.Asn95_Pro104del
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000368924
  ensembl transcript: ENST00000379604
  gene symbol: TFAP2A
  hgvsp: ENSP00000368924.2:p.Asn50_Pro59del
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000417495
  ensembl transcript: ENST00000466073
  gene symbol: TFAP2A
  hgvsp: ENSP00000417495.1:p.Asn50_Pro59del
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000419823
  ensembl transcript: ENST00000488193
  gene symbol: TFAP2A
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000420568
  ensembl transcript: ENST00000489805
  gene symbol: TFAP2A
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000368928
  ensembl transcript: ENST00000379608
  gene symbol: TFAP2A
  hgvsp: ENSP00000368928.3:p.Asn44_Pro53del
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000316516
  ensembl transcript: ENST00000319516
  gene symbol: TFAP2A
  hgvsp: ENSP00000316516.4:p.Asn46_Pro55del
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000464323
  gene symbol: TFAP2A
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000473652
  gene symbol: TFAP2A
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000497266
  gene symbol: TFAP2A
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000419961
  ensembl transcript: ENST00000498450
  gene symbol: TFAP2A
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000474952
  gene symbol: TFAP2A
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000490875
  gene symbol: TFAP2A
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000418541
  ensembl transcript: ENST00000482890
  gene symbol: TFAP2A
  hgvsp: ENSP00000418541.1:p.Asn50_Pro59del
  variant of: http://identifiers.org/hgnc/11742
canonical: true
consequence: inframe deletion
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 1293
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3424
  bin: 3.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 1033
  bin: 8.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 17211
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4895
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1115
  bin: 7.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2518
  bin: 4.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 1477
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asn50_Pro59del
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Latino
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: GGGGGAAGTATGGGGGCTGGAAGTCGGCATT
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP

6-10410437-GGGGAAGTATGGGGGCTGGAAGTCGGCATT-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10410437
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 10410408
    reference: chr 6
allele count: 8
allele frequency: 7.143112254009072e-5
allele num: 111996
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000490875
  gene symbol: TFAP2A
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000368928
  ensembl transcript: ENST00000379608
  gene symbol: TFAP2A
  hgvsp: ENSP00000368928.3:p.Asn44ProfsTer109
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000478375
  gene symbol: TFAP2A
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000474952
  gene symbol: TFAP2A
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000418391
  ensembl transcript: ENST00000465858
  gene symbol: TFAP2A
  hgvsp: ENSP00000418391.1:p.Asn95ProfsTer?
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000418541
  ensembl transcript: ENST00000482890
  gene symbol: TFAP2A
  hgvsp: ENSP00000418541.1:p.Asn50ProfsTer109
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000497266
  gene symbol: TFAP2A
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000229950
  ensembl transcript: ENST00000420777
  gene symbol: TFAP2A-AS1
  variant of: http://identifiers.org/hgnc/40579
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000368933
  ensembl transcript: ENST00000379613
  gene symbol: TFAP2A
  hgvsp: ENSP00000368933.3:p.Asn52ProfsTer109
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000417495
  ensembl transcript: ENST00000466073
  gene symbol: TFAP2A
  hgvsp: ENSP00000417495.1:p.Asn50ProfsTer109
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000473652
  gene symbol: TFAP2A
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000420568
  ensembl transcript: ENST00000489805
  gene symbol: TFAP2A
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000316516
  ensembl transcript: ENST00000319516
  gene symbol: TFAP2A
  hgvsp: ENSP00000316516.4:p.Asn46ProfsTer109
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000368924
  ensembl transcript: ENST00000379604
  gene symbol: TFAP2A
  hgvsp: ENSP00000368924.2:p.Asn50ProfsTer109
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000419823
  ensembl transcript: ENST00000488193
  gene symbol: TFAP2A
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000419961
  ensembl transcript: ENST00000498450
  gene symbol: TFAP2A
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000462727
  gene symbol: TFAP2A
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000464323
  gene symbol: TFAP2A
  variant of: http://identifiers.org/hgnc/11742
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 2604
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 760
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1439
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 17158
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2919
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 861
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6567
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2086
  bin: 5.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
hgvs: p.Asn50ProfsTer109
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Other
population: African
population: Latino
population: South Asian
reference allele: GGGGAAGTATGGGGGCTGGAAGTCGGCATT
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: DP

6-10410441-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10410441
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 10410441
    reference: chr 6
allele count: 2
allele frequency: 1.859773107680863e-5
allele num: 107540
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000478375
  gene symbol: TFAP2A
  hgvsc: ENST00000478375.1:n.173T>C
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000418391
  ensembl transcript: ENST00000465858
  gene symbol: TFAP2A
  hgvsc: ENST00000465858.1:c.308T>C
  hgvsp: ENSP00000418391.1:p.Phe103Ser
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000316516
  ensembl transcript: ENST00000319516
  gene symbol: TFAP2A
  hgvsc: ENST00000319516.4:c.161T>C
  hgvsp: ENSP00000316516.4:p.Phe54Ser
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000473652
  gene symbol: TFAP2A
  hgvsc: ENST00000473652.1:n.297-70T>C
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000490875
  gene symbol: TFAP2A
  hgvsc: ENST00000490875.1:n.415T>C
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000368924
  ensembl transcript: ENST00000379604
  gene symbol: TFAP2A
  hgvsc: ENST00000379604.2:c.173T>C
  hgvsp: ENSP00000368924.2:p.Phe58Ser
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000368933
  ensembl transcript: ENST00000379613
  gene symbol: TFAP2A
  hgvsc: ENST00000379613.3:c.179T>C
  hgvsp: ENSP00000368933.3:p.Phe60Ser
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000368928
  ensembl transcript: ENST00000379608
  gene symbol: TFAP2A
  hgvsc: ENST00000379608.3:c.155T>C
  hgvsp: ENSP00000368928.3:p.Phe52Ser
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000464323
  gene symbol: TFAP2A
  hgvsc: ENST00000464323.1:n.265T>C
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000229950
  ensembl transcript: ENST00000420777
  gene symbol: TFAP2A-AS1
  hgvsc: ENST00000420777.1:n.58+811A>G
  variant of: http://identifiers.org/hgnc/40579
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000419961
  ensembl transcript: ENST00000498450
  gene symbol: TFAP2A
  hgvsc: ENST00000498450.1:c.52-3364T>C
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000418541
  ensembl transcript: ENST00000482890
  gene symbol: TFAP2A
  hgvsc: ENST00000482890.1:c.173T>C
  hgvsp: ENSP00000418541.1:p.Phe58Ser
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000474952
  gene symbol: TFAP2A
  hgvsc: ENST00000474952.1:n.605T>C
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000462727
  gene symbol: TFAP2A
  hgvsc: ENST00000462727.1:n.211T>C
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000497266
  gene symbol: TFAP2A
  hgvsc: ENST00000497266.1:n.214-70T>C
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000417495
  ensembl transcript: ENST00000466073
  gene symbol: TFAP2A
  hgvsc: ENST00000466073.1:c.173T>C
  hgvsp: ENSP00000417495.1:p.Phe58Ser
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000419823
  ensembl transcript: ENST00000488193
  gene symbol: TFAP2A
  hgvsc: ENST00000488193.1:c.106-70T>C
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000420568
  ensembl transcript: ENST00000489805
  gene symbol: TFAP2A
  hgvsc: ENST00000489805.1:c.82-70T>C
  variant of: http://identifiers.org/hgnc/11742
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.90to99.95
genotype depth: GenotypeDepth
  all individuals: 6609
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2689
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1780
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Phe58Ser
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: DP

6-10410443-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10410443
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 10410443
    reference: chr 6
allele count: 1
allele frequency: 8.972472454509564e-6
allele num: 111452
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000462727
  gene symbol: TFAP2A
  hgvsc: ENST00000462727.1:n.209C>T
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000368933
  ensembl transcript: ENST00000379613
  gene symbol: TFAP2A
  hgvsc: ENST00000379613.3:c.177C>T
  hgvsp: ENST00000379613.3:c.177C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000420568
  ensembl transcript: ENST00000489805
  gene symbol: TFAP2A
  hgvsc: ENST00000489805.1:c.81+72C>T
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000478375
  gene symbol: TFAP2A
  hgvsc: ENST00000478375.1:n.171C>T
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000497266
  gene symbol: TFAP2A
  hgvsc: ENST00000497266.1:n.213+72C>T
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000418541
  ensembl transcript: ENST00000482890
  gene symbol: TFAP2A
  hgvsc: ENST00000482890.1:c.171C>T
  hgvsp: ENST00000482890.1:c.171C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000368928
  ensembl transcript: ENST00000379608
  gene symbol: TFAP2A
  hgvsc: ENST00000379608.3:c.153C>T
  hgvsp: ENST00000379608.3:c.153C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000418391
  ensembl transcript: ENST00000465858
  gene symbol: TFAP2A
  hgvsc: ENST00000465858.1:c.306C>T
  hgvsp: ENST00000465858.1:c.306C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000368924
  ensembl transcript: ENST00000379604
  gene symbol: TFAP2A
  hgvsc: ENST00000379604.2:c.171C>T
  hgvsp: ENST00000379604.2:c.171C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000473652
  gene symbol: TFAP2A
  hgvsc: ENST00000473652.1:n.296+72C>T
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000316516
  ensembl transcript: ENST00000319516
  gene symbol: TFAP2A
  hgvsc: ENST00000319516.4:c.159C>T
  hgvsp: ENST00000319516.4:c.159C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000474952
  gene symbol: TFAP2A
  hgvsc: ENST00000474952.1:n.603C>T
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000417495
  ensembl transcript: ENST00000466073
  gene symbol: TFAP2A
  hgvsc: ENST00000466073.1:c.171C>T
  hgvsp: ENST00000466073.1:c.171C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000490875
  gene symbol: TFAP2A
  hgvsc: ENST00000490875.1:n.413C>T
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000419961
  ensembl transcript: ENST00000498450
  gene symbol: TFAP2A
  hgvsc: ENST00000498450.1:c.52-3366C>T
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000464323
  gene symbol: TFAP2A
  hgvsc: ENST00000464323.1:n.263C>T
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000419823
  ensembl transcript: ENST00000488193
  gene symbol: TFAP2A
  hgvsc: ENST00000488193.1:c.105+72C>T
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000229950
  ensembl transcript: ENST00000420777
  gene symbol: TFAP2A-AS1
  hgvsc: ENST00000420777.1:n.58+813G>A
  variant of: http://identifiers.org/hgnc/40579
canonical: true
consequence: synonymous
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 2806
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3119
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3133
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Tyr57Tyr
num of homozygotes: 0
population: East Asian
population: Other
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum

6-10410443-GTATGGGGGCTGGAAGTCGGCATTGGGGGT-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10410443
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 10410414
    reference: chr 6
allele count: 4
allele frequency: 3.588988981803826e-5
allele num: 111452
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000419823
  ensembl transcript: ENST00000488193
  gene symbol: TFAP2A
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000316516
  ensembl transcript: ENST00000319516
  gene symbol: TFAP2A
  hgvsp: ENSP00000316516.4:p.Thr44LeufsTer111
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000417495
  ensembl transcript: ENST00000466073
  gene symbol: TFAP2A
  hgvsp: ENSP00000417495.1:p.Thr48LeufsTer111
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000368924
  ensembl transcript: ENST00000379604
  gene symbol: TFAP2A
  hgvsp: ENSP00000368924.2:p.Thr48LeufsTer111
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000229950
  ensembl transcript: ENST00000420777
  gene symbol: TFAP2A-AS1
  variant of: http://identifiers.org/hgnc/40579
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000418391
  ensembl transcript: ENST00000465858
  gene symbol: TFAP2A
  hgvsp: ENSP00000418391.1:p.Thr93LeufsTer?
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000368928
  ensembl transcript: ENST00000379608
  gene symbol: TFAP2A
  hgvsp: ENSP00000368928.3:p.Thr42LeufsTer111
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000462727
  gene symbol: TFAP2A
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000368933
  ensembl transcript: ENST00000379613
  gene symbol: TFAP2A
  hgvsp: ENSP00000368933.3:p.Thr50LeufsTer111
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000418541
  ensembl transcript: ENST00000482890
  gene symbol: TFAP2A
  hgvsp: ENSP00000418541.1:p.Thr48LeufsTer111
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000420568
  ensembl transcript: ENST00000489805
  gene symbol: TFAP2A
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000490875
  gene symbol: TFAP2A
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000473652
  gene symbol: TFAP2A
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000478375
  gene symbol: TFAP2A
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000419961
  ensembl transcript: ENST00000498450
  gene symbol: TFAP2A
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000464323
  gene symbol: TFAP2A
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000474952
  gene symbol: TFAP2A
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000497266
  gene symbol: TFAP2A
  variant of: http://identifiers.org/hgnc/11742
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 1110
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4431
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 929
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2806
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16625
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 727
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1600
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3133
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr48LeufsTer111
num of homozygotes: 0
population: East Asian
population: Other
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: African
reference allele: GTATGGGGGCTGGAAGTCGGCATTGGGGGT
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff

6-10410446-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10410446
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 10410446
    reference: chr 6
allele count: 2
allele frequency: 3.4592500345925e-5
allele num: 57816
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000418391
  ensembl transcript: ENST00000465858
  gene symbol: TFAP2A
  hgvsc: ENST00000465858.1:c.303A>C
  hgvsp: ENST00000465858.1:c.303A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000462727
  gene symbol: TFAP2A
  hgvsc: ENST00000462727.1:n.206A>C
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000473652
  gene symbol: TFAP2A
  hgvsc: ENST00000473652.1:n.296+69A>C
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000474952
  gene symbol: TFAP2A
  hgvsc: ENST00000474952.1:n.600A>C
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000316516
  ensembl transcript: ENST00000319516
  gene symbol: TFAP2A
  hgvsc: ENST00000319516.4:c.156A>C
  hgvsp: ENST00000319516.4:c.156A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000368928
  ensembl transcript: ENST00000379608
  gene symbol: TFAP2A
  hgvsc: ENST00000379608.3:c.150A>C
  hgvsp: ENST00000379608.3:c.150A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000478375
  gene symbol: TFAP2A
  hgvsc: ENST00000478375.1:n.168A>C
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000368924
  ensembl transcript: ENST00000379604
  gene symbol: TFAP2A
  hgvsc: ENST00000379604.2:c.168A>C
  hgvsp: ENST00000379604.2:c.168A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000417495
  ensembl transcript: ENST00000466073
  gene symbol: TFAP2A
  hgvsc: ENST00000466073.1:c.168A>C
  hgvsp: ENST00000466073.1:c.168A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000497266
  gene symbol: TFAP2A
  hgvsc: ENST00000497266.1:n.213+69A>C
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000368933
  ensembl transcript: ENST00000379613
  gene symbol: TFAP2A
  hgvsc: ENST00000379613.3:c.174A>C
  hgvsp: ENST00000379613.3:c.174A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000490875
  gene symbol: TFAP2A
  hgvsc: ENST00000490875.1:n.410A>C
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000419823
  ensembl transcript: ENST00000488193
  gene symbol: TFAP2A
  hgvsc: ENST00000488193.1:c.105+69A>C
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000464323
  gene symbol: TFAP2A
  hgvsc: ENST00000464323.1:n.260A>C
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000419961
  ensembl transcript: ENST00000498450
  gene symbol: TFAP2A
  hgvsc: ENST00000498450.1:c.52-3369A>C
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000420568
  ensembl transcript: ENST00000489805
  gene symbol: TFAP2A
  hgvsc: ENST00000489805.1:c.81+69A>C
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000418541
  ensembl transcript: ENST00000482890
  gene symbol: TFAP2A
  hgvsc: ENST00000482890.1:c.168A>C
  hgvsp: ENST00000482890.1:c.168A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000229950
  ensembl transcript: ENST00000420777
  gene symbol: TFAP2A-AS1
  hgvsc: ENST00000420777.1:n.58+816T>G
  variant of: http://identifiers.org/hgnc/40579
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 932
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1238
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1583
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro56Pro
num of homozygotes: 0
population: African
population: East Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: T
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ

6-10410447-GGGGGCTGGAAGTCGGCATT-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10410447
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 10410428
    reference: chr 6
allele count: 7
allele frequency: 6.287048679719777e-5
allele num: 111340
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000368933
  ensembl transcript: ENST00000379613
  gene symbol: TFAP2A
  hgvsp: ENSP00000368933.3:p.Asn52HisfsTer27
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000368924
  ensembl transcript: ENST00000379604
  gene symbol: TFAP2A
  hgvsp: ENSP00000368924.2:p.Asn50HisfsTer27
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000490875
  gene symbol: TFAP2A
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000316516
  ensembl transcript: ENST00000319516
  gene symbol: TFAP2A
  hgvsp: ENSP00000316516.4:p.Asn46HisfsTer27
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000418391
  ensembl transcript: ENST00000465858
  gene symbol: TFAP2A
  hgvsp: ENSP00000418391.1:p.Asn95HisfsTer27
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000497266
  gene symbol: TFAP2A
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000420568
  ensembl transcript: ENST00000489805
  gene symbol: TFAP2A
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000462727
  gene symbol: TFAP2A
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000418541
  ensembl transcript: ENST00000482890
  gene symbol: TFAP2A
  hgvsp: ENSP00000418541.1:p.Asn50HisfsTer27
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000368928
  ensembl transcript: ENST00000379608
  gene symbol: TFAP2A
  hgvsp: ENSP00000368928.3:p.Asn44HisfsTer27
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000417495
  ensembl transcript: ENST00000466073
  gene symbol: TFAP2A
  hgvsp: ENSP00000417495.1:p.Asn50HisfsTer27
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000419961
  ensembl transcript: ENST00000498450
  gene symbol: TFAP2A
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000474952
  gene symbol: TFAP2A
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000478375
  gene symbol: TFAP2A
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000419823
  ensembl transcript: ENST00000488193
  gene symbol: TFAP2A
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000473652
  gene symbol: TFAP2A
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000229950
  ensembl transcript: ENST00000420777
  gene symbol: TFAP2A-AS1
  variant of: http://identifiers.org/hgnc/40579
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000464323
  gene symbol: TFAP2A
  variant of: http://identifiers.org/hgnc/11742
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 3230
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1426
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4921
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 10475
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6134
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6287
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3455
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Asn50HisfsTer27
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Other
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
reference allele: GGGGGCTGGAAGTCGGCATT
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: DP

6-10410449-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10410449
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 10410449
    reference: chr 6
allele count: 1
allele frequency: 9.005439285328339e-6
allele num: 111044
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000417495
  ensembl transcript: ENST00000466073
  gene symbol: TFAP2A
  hgvsc: ENST00000466073.1:c.165C>T
  hgvsp: ENST00000466073.1:c.165C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000418541
  ensembl transcript: ENST00000482890
  gene symbol: TFAP2A
  hgvsc: ENST00000482890.1:c.165C>T
  hgvsp: ENST00000482890.1:c.165C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000420568
  ensembl transcript: ENST00000489805
  gene symbol: TFAP2A
  hgvsc: ENST00000489805.1:c.81+66C>T
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000368924
  ensembl transcript: ENST00000379604
  gene symbol: TFAP2A
  hgvsc: ENST00000379604.2:c.165C>T
  hgvsp: ENST00000379604.2:c.165C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000490875
  gene symbol: TFAP2A
  hgvsc: ENST00000490875.1:n.407C>T
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000418391
  ensembl transcript: ENST00000465858
  gene symbol: TFAP2A
  hgvsc: ENST00000465858.1:c.300C>T
  hgvsp: ENST00000465858.1:c.300C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000316516
  ensembl transcript: ENST00000319516
  gene symbol: TFAP2A
  hgvsc: ENST00000319516.4:c.153C>T
  hgvsp: ENST00000319516.4:c.153C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000497266
  gene symbol: TFAP2A
  hgvsc: ENST00000497266.1:n.213+66C>T
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000478375
  gene symbol: TFAP2A
  hgvsc: ENST00000478375.1:n.165C>T
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000229950
  ensembl transcript: ENST00000420777
  gene symbol: TFAP2A-AS1
  hgvsc: ENST00000420777.1:n.58+819G>A
  variant of: http://identifiers.org/hgnc/40579
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000473652
  gene symbol: TFAP2A
  hgvsc: ENST00000473652.1:n.296+66C>T
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000462727
  gene symbol: TFAP2A
  hgvsc: ENST00000462727.1:n.203C>T
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000474952
  gene symbol: TFAP2A
  hgvsc: ENST00000474952.1:n.597C>T
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000464323
  gene symbol: TFAP2A
  hgvsc: ENST00000464323.1:n.257C>T
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000368928
  ensembl transcript: ENST00000379608
  gene symbol: TFAP2A
  hgvsc: ENST00000379608.3:c.147C>T
  hgvsp: ENST00000379608.3:c.147C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000419961
  ensembl transcript: ENST00000498450
  gene symbol: TFAP2A
  hgvsc: ENST00000498450.1:c.52-3372C>T
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000419823
  ensembl transcript: ENST00000488193
  gene symbol: TFAP2A
  hgvsc: ENST00000488193.1:c.105+66C>T
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000368933
  ensembl transcript: ENST00000379613
  gene symbol: TFAP2A
  hgvsc: ENST00000379613.3:c.171C>T
  hgvsp: ENST00000379613.3:c.171C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11742
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4970
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1560
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4632
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro55Pro
num of homozygotes: 0
population: South Asian
population: African
population: European (Finnish)
population: Latino
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: VQSLOD

6-10410457-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10410457
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 10410457
    reference: chr 6
allele count: 2
allele frequency: 2.488986235906116e-5
allele num: 80354
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000418391
  ensembl transcript: ENST00000465858
  gene symbol: TFAP2A
  hgvsc: ENST00000465858.1:c.292T>C
  hgvsp: ENSP00000418391.1:p.Phe98Leu
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000474952
  gene symbol: TFAP2A
  hgvsc: ENST00000474952.1:n.589T>C
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000473652
  gene symbol: TFAP2A
  hgvsc: ENST00000473652.1:n.296+58T>C
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000419823
  ensembl transcript: ENST00000488193
  gene symbol: TFAP2A
  hgvsc: ENST00000488193.1:c.105+58T>C
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000368933
  ensembl transcript: ENST00000379613
  gene symbol: TFAP2A
  hgvsc: ENST00000379613.3:c.163T>C
  hgvsp: ENSP00000368933.3:p.Phe55Leu
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000417495
  ensembl transcript: ENST00000466073
  gene symbol: TFAP2A
  hgvsc: ENST00000466073.1:c.157T>C
  hgvsp: ENSP00000417495.1:p.Phe53Leu
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000418541
  ensembl transcript: ENST00000482890
  gene symbol: TFAP2A
  hgvsc: ENST00000482890.1:c.157T>C
  hgvsp: ENSP00000418541.1:p.Phe53Leu
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000497266
  gene symbol: TFAP2A
  hgvsc: ENST00000497266.1:n.213+58T>C
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000368924
  ensembl transcript: ENST00000379604
  gene symbol: TFAP2A
  hgvsc: ENST00000379604.2:c.157T>C
  hgvsp: ENSP00000368924.2:p.Phe53Leu
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000368928
  ensembl transcript: ENST00000379608
  gene symbol: TFAP2A
  hgvsc: ENST00000379608.3:c.139T>C
  hgvsp: ENSP00000368928.3:p.Phe47Leu
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000490875
  gene symbol: TFAP2A
  hgvsc: ENST00000490875.1:n.399T>C
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000419961
  ensembl transcript: ENST00000498450
  gene symbol: TFAP2A
  hgvsc: ENST00000498450.1:c.52-3380T>C
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000420568
  ensembl transcript: ENST00000489805
  gene symbol: TFAP2A
  hgvsc: ENST00000489805.1:c.81+58T>C
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000464323
  gene symbol: TFAP2A
  hgvsc: ENST00000464323.1:n.249T>C
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000316516
  ensembl transcript: ENST00000319516
  gene symbol: TFAP2A
  hgvsc: ENST00000319516.4:c.145T>C
  hgvsp: ENSP00000316516.4:p.Phe49Leu
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000478375
  gene symbol: TFAP2A
  hgvsc: ENST00000478375.1:n.157T>C
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000462727
  gene symbol: TFAP2A
  hgvsc: ENST00000462727.1:n.195T>C
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000229950
  ensembl transcript: ENST00000420777
  gene symbol: TFAP2A-AS1
  hgvsc: ENST00000420777.1:n.58+827A>G
  variant of: http://identifiers.org/hgnc/40579
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12683
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2653
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Phe53Leu
num of homozygotes: 0
population: East Asian
population: Other
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
reference allele: A
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum

6-10410459-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10410459
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 10410459
    reference: chr 6
allele count: 5
allele frequency: 5.456966363259337e-5
allele num: 91626
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000418541
  ensembl transcript: ENST00000482890
  gene symbol: TFAP2A
  hgvsc: ENST00000482890.1:c.155A>C
  hgvsp: ENSP00000418541.1:p.Asp52Ala
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000419823
  ensembl transcript: ENST00000488193
  gene symbol: TFAP2A
  hgvsc: ENST00000488193.1:c.105+56A>C
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000418391
  ensembl transcript: ENST00000465858
  gene symbol: TFAP2A
  hgvsc: ENST00000465858.1:c.290A>C
  hgvsp: ENSP00000418391.1:p.Asp97Ala
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000490875
  gene symbol: TFAP2A
  hgvsc: ENST00000490875.1:n.397A>C
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000368924
  ensembl transcript: ENST00000379604
  gene symbol: TFAP2A
  hgvsc: ENST00000379604.2:c.155A>C
  hgvsp: ENSP00000368924.2:p.Asp52Ala
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000474952
  gene symbol: TFAP2A
  hgvsc: ENST00000474952.1:n.587A>C
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000368933
  ensembl transcript: ENST00000379613
  gene symbol: TFAP2A
  hgvsc: ENST00000379613.3:c.161A>C
  hgvsp: ENSP00000368933.3:p.Asp54Ala
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000417495
  ensembl transcript: ENST00000466073
  gene symbol: TFAP2A
  hgvsc: ENST00000466073.1:c.155A>C
  hgvsp: ENSP00000417495.1:p.Asp52Ala
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000368928
  ensembl transcript: ENST00000379608
  gene symbol: TFAP2A
  hgvsc: ENST00000379608.3:c.137A>C
  hgvsp: ENSP00000368928.3:p.Asp46Ala
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000478375
  gene symbol: TFAP2A
  hgvsc: ENST00000478375.1:n.155A>C
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000464323
  gene symbol: TFAP2A
  hgvsc: ENST00000464323.1:n.247A>C
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000462727
  gene symbol: TFAP2A
  hgvsc: ENST00000462727.1:n.193A>C
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000473652
  gene symbol: TFAP2A
  hgvsc: ENST00000473652.1:n.296+56A>C
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000420568
  ensembl transcript: ENST00000489805
  gene symbol: TFAP2A
  hgvsc: ENST00000489805.1:c.81+56A>C
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000497266
  gene symbol: TFAP2A
  hgvsc: ENST00000497266.1:n.213+56A>C
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000419961
  ensembl transcript: ENST00000498450
  gene symbol: TFAP2A
  hgvsc: ENST00000498450.1:c.52-3382A>C
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000316516
  ensembl transcript: ENST00000319516
  gene symbol: TFAP2A
  hgvsc: ENST00000319516.4:c.143A>C
  hgvsp: ENSP00000316516.4:p.Asp48Ala
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000229950
  ensembl transcript: ENST00000420777
  gene symbol: TFAP2A-AS1
  hgvsc: ENST00000420777.1:n.58+829T>G
  variant of: http://identifiers.org/hgnc/40579
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1433
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2069
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1171
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asp52Ala
num of homozygotes: 0
population: African
population: Other
population: Latino
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum

6-10410463-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10410463
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 10410463
    reference: chr 6
allele count: 5
allele frequency: 8.434263351438886e-5
allele num: 59282
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000417495
  ensembl transcript: ENST00000466073
  gene symbol: TFAP2A
  hgvsc: ENST00000466073.1:c.151G>C
  hgvsp: ENSP00000417495.1:p.Ala51Pro
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000420568
  ensembl transcript: ENST00000489805
  gene symbol: TFAP2A
  hgvsc: ENST00000489805.1:c.81+52G>C
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000229950
  ensembl transcript: ENST00000420777
  gene symbol: TFAP2A-AS1
  hgvsc: ENST00000420777.1:n.58+833C>G
  variant of: http://identifiers.org/hgnc/40579
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000490875
  gene symbol: TFAP2A
  hgvsc: ENST00000490875.1:n.393G>C
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000462727
  gene symbol: TFAP2A
  hgvsc: ENST00000462727.1:n.189G>C
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000418541
  ensembl transcript: ENST00000482890
  gene symbol: TFAP2A
  hgvsc: ENST00000482890.1:c.151G>C
  hgvsp: ENSP00000418541.1:p.Ala51Pro
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000316516
  ensembl transcript: ENST00000319516
  gene symbol: TFAP2A
  hgvsc: ENST00000319516.4:c.139G>C
  hgvsp: ENSP00000316516.4:p.Ala47Pro
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000478375
  gene symbol: TFAP2A
  hgvsc: ENST00000478375.1:n.151G>C
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000419823
  ensembl transcript: ENST00000488193
  gene symbol: TFAP2A
  hgvsc: ENST00000488193.1:c.105+52G>C
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000368924
  ensembl transcript: ENST00000379604
  gene symbol: TFAP2A
  hgvsc: ENST00000379604.2:c.151G>C
  hgvsp: ENSP00000368924.2:p.Ala51Pro
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000418391
  ensembl transcript: ENST00000465858
  gene symbol: TFAP2A
  hgvsc: ENST00000465858.1:c.286G>C
  hgvsp: ENSP00000418391.1:p.Ala96Pro
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000419961
  ensembl transcript: ENST00000498450
  gene symbol: TFAP2A
  hgvsc: ENST00000498450.1:c.52-3386G>C
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000474952
  gene symbol: TFAP2A
  hgvsc: ENST00000474952.1:n.583G>C
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000473652
  gene symbol: TFAP2A
  hgvsc: ENST00000473652.1:n.296+52G>C
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000464323
  gene symbol: TFAP2A
  hgvsc: ENST00000464323.1:n.243G>C
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000368933
  ensembl transcript: ENST00000379613
  gene symbol: TFAP2A
  hgvsc: ENST00000379613.3:c.157G>C
  hgvsp: ENSP00000368933.3:p.Ala53Pro
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000368928
  ensembl transcript: ENST00000379608
  gene symbol: TFAP2A
  hgvsc: ENST00000379608.3:c.133G>C
  hgvsp: ENSP00000368928.3:p.Ala45Pro
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000497266
  gene symbol: TFAP2A
  hgvsc: ENST00000497266.1:n.213+52G>C
  variant of: http://identifiers.org/hgnc/11742
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 5169
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala51Pro
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum

6-10410465-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10410465
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 10410465
    reference: chr 6
allele count: 4
allele frequency: 4.980327705563026e-5
allele num: 80316
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000462727
  gene symbol: TFAP2A
  hgvsc: ENST00000462727.1:n.187A>G
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000464323
  gene symbol: TFAP2A
  hgvsc: ENST00000464323.1:n.241A>G
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000418541
  ensembl transcript: ENST00000482890
  gene symbol: TFAP2A
  hgvsc: ENST00000482890.1:c.149A>G
  hgvsp: ENSP00000418541.1:p.Asn50Ser
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000473652
  gene symbol: TFAP2A
  hgvsc: ENST00000473652.1:n.296+50A>G
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000420568
  ensembl transcript: ENST00000489805
  gene symbol: TFAP2A
  hgvsc: ENST00000489805.1:c.81+50A>G
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000316516
  ensembl transcript: ENST00000319516
  gene symbol: TFAP2A
  hgvsc: ENST00000319516.4:c.137A>G
  hgvsp: ENSP00000316516.4:p.Asn46Ser
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000368928
  ensembl transcript: ENST00000379608
  gene symbol: TFAP2A
  hgvsc: ENST00000379608.3:c.131A>G
  hgvsp: ENSP00000368928.3:p.Asn44Ser
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000229950
  ensembl transcript: ENST00000420777
  gene symbol: TFAP2A-AS1
  hgvsc: ENST00000420777.1:n.58+835T>C
  variant of: http://identifiers.org/hgnc/40579
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000490875
  gene symbol: TFAP2A
  hgvsc: ENST00000490875.1:n.391A>G
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000368933
  ensembl transcript: ENST00000379613
  gene symbol: TFAP2A
  hgvsc: ENST00000379613.3:c.155A>G
  hgvsp: ENSP00000368933.3:p.Asn52Ser
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000474952
  gene symbol: TFAP2A
  hgvsc: ENST00000474952.1:n.581A>G
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000419823
  ensembl transcript: ENST00000488193
  gene symbol: TFAP2A
  hgvsc: ENST00000488193.1:c.105+50A>G
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000368924
  ensembl transcript: ENST00000379604
  gene symbol: TFAP2A
  hgvsc: ENST00000379604.2:c.149A>G
  hgvsp: ENSP00000368924.2:p.Asn50Ser
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000478375
  gene symbol: TFAP2A
  hgvsc: ENST00000478375.1:n.149A>G
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000417495
  ensembl transcript: ENST00000466073
  gene symbol: TFAP2A
  hgvsc: ENST00000466073.1:c.149A>G
  hgvsp: ENSP00000417495.1:p.Asn50Ser
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000419961
  ensembl transcript: ENST00000498450
  gene symbol: TFAP2A
  hgvsc: ENST00000498450.1:c.52-3388A>G
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000418391
  ensembl transcript: ENST00000465858
  gene symbol: TFAP2A
  hgvsc: ENST00000465858.1:c.284A>G
  hgvsp: ENSP00000418391.1:p.Asn95Ser
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000497266
  gene symbol: TFAP2A
  hgvsc: ENST00000497266.1:n.213+50A>G
  variant of: http://identifiers.org/hgnc/11742
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10780
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1282
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asn50Ser
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: T
site quality: DP
site quality: FS
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum

6-10410466-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10410466
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 10410466
    reference: chr 6
allele count: 110
allele frequency: 3.313452617627568e-3
allele num: 33198
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000368933
  ensembl transcript: ENST00000379613
  gene symbol: TFAP2A
  hgvsc: ENST00000379613.3:c.154A>C
  hgvsp: ENSP00000368933.3:p.Asn52His
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000490875
  gene symbol: TFAP2A
  hgvsc: ENST00000490875.1:n.390A>C
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000316516
  ensembl transcript: ENST00000319516
  gene symbol: TFAP2A
  hgvsc: ENST00000319516.4:c.136A>C
  hgvsp: ENSP00000316516.4:p.Asn46His
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000420568
  ensembl transcript: ENST00000489805
  gene symbol: TFAP2A
  hgvsc: ENST00000489805.1:c.81+49A>C
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000368928
  ensembl transcript: ENST00000379608
  gene symbol: TFAP2A
  hgvsc: ENST00000379608.3:c.130A>C
  hgvsp: ENSP00000368928.3:p.Asn44His
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000417495
  ensembl transcript: ENST00000466073
  gene symbol: TFAP2A
  hgvsc: ENST00000466073.1:c.148A>C
  hgvsp: ENSP00000417495.1:p.Asn50His
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000478375
  gene symbol: TFAP2A
  hgvsc: ENST00000478375.1:n.148A>C
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000418541
  ensembl transcript: ENST00000482890
  gene symbol: TFAP2A
  hgvsc: ENST00000482890.1:c.148A>C
  hgvsp: ENSP00000418541.1:p.Asn50His
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000474952
  gene symbol: TFAP2A
  hgvsc: ENST00000474952.1:n.580A>C
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000368924
  ensembl transcript: ENST00000379604
  gene symbol: TFAP2A
  hgvsc: ENST00000379604.2:c.148A>C
  hgvsp: ENSP00000368924.2:p.Asn50His
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000462727
  gene symbol: TFAP2A
  hgvsc: ENST00000462727.1:n.186A>C
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000229950
  ensembl transcript: ENST00000420777
  gene symbol: TFAP2A-AS1
  hgvsc: ENST00000420777.1:n.58+836T>G
  variant of: http://identifiers.org/hgnc/40579
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000473652
  gene symbol: TFAP2A
  hgvsc: ENST00000473652.1:n.296+49A>C
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000418391
  ensembl transcript: ENST00000465858
  gene symbol: TFAP2A
  hgvsc: ENST00000465858.1:c.283A>C
  hgvsp: ENSP00000418391.1:p.Asn95His
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000497266
  gene symbol: TFAP2A
  hgvsc: ENST00000497266.1:n.213+49A>C
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000464323
  gene symbol: TFAP2A
  hgvsc: ENST00000464323.1:n.240A>C
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000419823
  ensembl transcript: ENST00000488193
  gene symbol: TFAP2A
  hgvsc: ENST00000488193.1:c.105+49A>C
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000419961
  ensembl transcript: ENST00000498450
  gene symbol: TFAP2A
  hgvsc: ENST00000498450.1:c.52-3389A>C
  variant of: http://identifiers.org/hgnc/11742
canonical: true
consequence: missense
filter: VQSRTrancheINDEL99.90to99.95
genotype depth: GenotypeDepth
  all individuals: 3102
  bin: 3.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 1027
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asn50His
num of homozygotes: 0
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
population: East Asian
reference allele: T
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: ClippingRankSum

6-10410466-T-TGG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10410466
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 10410468
    reference: chr 6
allele count: 13
allele frequency: 3.915898548105308e-4
allele num: 33198
alternate allele: TGG
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000490875
  gene symbol: TFAP2A
  hgvsc: ENST00000490875.1:n.388_389dupCC
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000368933
  ensembl transcript: ENST00000379613
  gene symbol: TFAP2A
  hgvsc: ENST00000379613.3:c.152_153dupCC
  hgvsp: ENSP00000368933.3:p.Asn52ProfsTer34
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000368924
  ensembl transcript: ENST00000379604
  gene symbol: TFAP2A
  hgvsc: ENST00000379604.2:c.146_147dupCC
  hgvsp: ENSP00000368924.2:p.Asn50ProfsTer34
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000474952
  gene symbol: TFAP2A
  hgvsc: ENST00000474952.1:n.578_579dupCC
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000417495
  ensembl transcript: ENST00000466073
  gene symbol: TFAP2A
  hgvsc: ENST00000466073.1:c.146_147dupCC
  hgvsp: ENSP00000417495.1:p.Asn50ProfsTer34
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000418541
  ensembl transcript: ENST00000482890
  gene symbol: TFAP2A
  hgvsc: ENST00000482890.1:c.146_147dupCC
  hgvsp: ENSP00000418541.1:p.Asn50ProfsTer34
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000418391
  ensembl transcript: ENST00000465858
  gene symbol: TFAP2A
  hgvsc: ENST00000465858.1:c.281_282dupCC
  hgvsp: ENSP00000418391.1:p.Asn95ProfsTer34
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000473652
  gene symbol: TFAP2A
  hgvsc: ENST00000473652.1:n.296+47_296+48dupCC
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000478375
  gene symbol: TFAP2A
  hgvsc: ENST00000478375.1:n.146_147dupCC
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000462727
  gene symbol: TFAP2A
  hgvsc: ENST00000462727.1:n.184_185dupCC
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000229950
  ensembl transcript: ENST00000420777
  gene symbol: TFAP2A-AS1
  hgvsc: ENST00000420777.1:n.58+840_58+841dupGG
  variant of: http://identifiers.org/hgnc/40579
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000419823
  ensembl transcript: ENST00000488193
  gene symbol: TFAP2A
  hgvsc: ENST00000488193.1:c.105+47_105+48dupCC
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000316516
  ensembl transcript: ENST00000319516
  gene symbol: TFAP2A
  hgvsc: ENST00000319516.4:c.134_135dupCC
  hgvsp: ENSP00000316516.4:p.Asn46ProfsTer34
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000497266
  gene symbol: TFAP2A
  hgvsc: ENST00000497266.1:n.213+47_213+48dupCC
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000368928
  ensembl transcript: ENST00000379608
  gene symbol: TFAP2A
  hgvsc: ENST00000379608.3:c.128_129dupCC
  hgvsp: ENSP00000368928.3:p.Asn44ProfsTer34
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000419961
  ensembl transcript: ENST00000498450
  gene symbol: TFAP2A
  hgvsc: ENST00000498450.1:c.52-3391_52-3390dupCC
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000420568
  ensembl transcript: ENST00000489805
  gene symbol: TFAP2A
  hgvsc: ENST00000489805.1:c.81+47_81+48dupCC
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000464323
  gene symbol: TFAP2A
  hgvsc: ENST00000464323.1:n.238_239dupCC
  variant of: http://identifiers.org/hgnc/11742
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL99.90to99.95
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3772
  bin: 7.5e0
  variant carriers: 4
genotype quality: GenotypeQuality
hgvs: p.Asn50ProfsTer34
num of homozygotes: 0
population: Other
population: European (Finnish)
population: African
population: South Asian
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: T
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum

6-10410468-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10410468
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 10410468
    reference: chr 6
allele count: 0
allele frequency: 0.0e0
allele num: 110502
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000418391
  ensembl transcript: ENST00000465858
  gene symbol: TFAP2A
  hgvsc: ENST00000465858.1:c.281C>T
  hgvsp: ENSP00000418391.1:p.Pro94Leu
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000368928
  ensembl transcript: ENST00000379608
  gene symbol: TFAP2A
  hgvsc: ENST00000379608.3:c.128C>T
  hgvsp: ENSP00000368928.3:p.Pro43Leu
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000417495
  ensembl transcript: ENST00000466073
  gene symbol: TFAP2A
  hgvsc: ENST00000466073.1:c.146C>T
  hgvsp: ENSP00000417495.1:p.Pro49Leu
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000420568
  ensembl transcript: ENST00000489805
  gene symbol: TFAP2A
  hgvsc: ENST00000489805.1:c.81+47C>T
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000419823
  ensembl transcript: ENST00000488193
  gene symbol: TFAP2A
  hgvsc: ENST00000488193.1:c.105+47C>T
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000490875
  gene symbol: TFAP2A
  hgvsc: ENST00000490875.1:n.388C>T
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000478375
  gene symbol: TFAP2A
  hgvsc: ENST00000478375.1:n.146C>T
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000462727
  gene symbol: TFAP2A
  hgvsc: ENST00000462727.1:n.184C>T
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000229950
  ensembl transcript: ENST00000420777
  gene symbol: TFAP2A-AS1
  hgvsc: ENST00000420777.1:n.58+838G>A
  variant of: http://identifiers.org/hgnc/40579
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000473652
  gene symbol: TFAP2A
  hgvsc: ENST00000473652.1:n.296+47C>T
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000368933
  ensembl transcript: ENST00000379613
  gene symbol: TFAP2A
  hgvsc: ENST00000379613.3:c.152C>T
  hgvsp: ENSP00000368933.3:p.Pro51Leu
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000464323
  gene symbol: TFAP2A
  hgvsc: ENST00000464323.1:n.238C>T
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000368924
  ensembl transcript: ENST00000379604
  gene symbol: TFAP2A
  hgvsc: ENST00000379604.2:c.146C>T
  hgvsp: ENSP00000368924.2:p.Pro49Leu
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000497266
  gene symbol: TFAP2A
  hgvsc: ENST00000497266.1:n.213+47C>T
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000316516
  ensembl transcript: ENST00000319516
  gene symbol: TFAP2A
  hgvsc: ENST00000319516.4:c.134C>T
  hgvsp: ENSP00000316516.4:p.Pro45Leu
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000418541
  ensembl transcript: ENST00000482890
  gene symbol: TFAP2A
  hgvsc: ENST00000482890.1:c.146C>T
  hgvsp: ENSP00000418541.1:p.Pro49Leu
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000474952
  gene symbol: TFAP2A
  hgvsc: ENST00000474952.1:n.578C>T
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000419961
  ensembl transcript: ENST00000498450
  gene symbol: TFAP2A
  hgvsc: ENST00000498450.1:c.52-3391C>T
  variant of: http://identifiers.org/hgnc/11742
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10472
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Pro49Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: South Asian
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD

6-10410471-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10410471
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 10410471
    reference: chr 6
allele count: 1
allele frequency: 9.533615528352973e-6
allele num: 104892
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000490875
  gene symbol: TFAP2A
  hgvsc: ENST00000490875.1:n.385C>G
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000368933
  ensembl transcript: ENST00000379613
  gene symbol: TFAP2A
  hgvsc: ENST00000379613.3:c.149C>G
  hgvsp: ENSP00000368933.3:p.Thr50Ser
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000462727
  gene symbol: TFAP2A
  hgvsc: ENST00000462727.1:n.181C>G
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000474952
  gene symbol: TFAP2A
  hgvsc: ENST00000474952.1:n.575C>G
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000229950
  ensembl transcript: ENST00000420777
  gene symbol: TFAP2A-AS1
  hgvsc: ENST00000420777.1:n.58+841G>C
  variant of: http://identifiers.org/hgnc/40579
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000418541
  ensembl transcript: ENST00000482890
  gene symbol: TFAP2A
  hgvsc: ENST00000482890.1:c.143C>G
  hgvsp: ENSP00000418541.1:p.Thr48Ser
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000417495
  ensembl transcript: ENST00000466073
  gene symbol: TFAP2A
  hgvsc: ENST00000466073.1:c.143C>G
  hgvsp: ENSP00000417495.1:p.Thr48Ser
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000419961
  ensembl transcript: ENST00000498450
  gene symbol: TFAP2A
  hgvsc: ENST00000498450.1:c.52-3394C>G
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000464323
  gene symbol: TFAP2A
  hgvsc: ENST00000464323.1:n.235C>G
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000368924
  ensembl transcript: ENST00000379604
  gene symbol: TFAP2A
  hgvsc: ENST00000379604.2:c.143C>G
  hgvsp: ENSP00000368924.2:p.Thr48Ser
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000420568
  ensembl transcript: ENST00000489805
  gene symbol: TFAP2A
  hgvsc: ENST00000489805.1:c.81+44C>G
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000419823
  ensembl transcript: ENST00000488193
  gene symbol: TFAP2A
  hgvsc: ENST00000488193.1:c.105+44C>G
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000497266
  gene symbol: TFAP2A
  hgvsc: ENST00000497266.1:n.213+44C>G
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000418391
  ensembl transcript: ENST00000465858
  gene symbol: TFAP2A
  hgvsc: ENST00000465858.1:c.278C>G
  hgvsp: ENSP00000418391.1:p.Thr93Ser
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000368928
  ensembl transcript: ENST00000379608
  gene symbol: TFAP2A
  hgvsc: ENST00000379608.3:c.125C>G
  hgvsp: ENSP00000368928.3:p.Thr42Ser
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000478375
  gene symbol: TFAP2A
  hgvsc: ENST00000478375.1:n.143C>G
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000473652
  gene symbol: TFAP2A
  hgvsc: ENST00000473652.1:n.296+44C>G
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000316516
  ensembl transcript: ENST00000319516
  gene symbol: TFAP2A
  hgvsc: ENST00000319516.4:c.131C>G
  hgvsp: ENSP00000316516.4:p.Thr44Ser
  variant of: http://identifiers.org/hgnc/11742
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3139
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr48Ser
num of homozygotes: 0
population: Other
population: European (Finnish)
population: South Asian
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: ReadPosRankSum

6-10410472-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10410472
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 10410472
    reference: chr 6
allele count: 32
allele frequency: 3.851338340073175e-4
allele num: 83088
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000464323
  gene symbol: TFAP2A
  hgvsc: ENST00000464323.1:n.234A>C
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000478375
  gene symbol: TFAP2A
  hgvsc: ENST00000478375.1:n.142A>C
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000417495
  ensembl transcript: ENST00000466073
  gene symbol: TFAP2A
  hgvsc: ENST00000466073.1:c.142A>C
  hgvsp: ENSP00000417495.1:p.Thr48Pro
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000418541
  ensembl transcript: ENST00000482890
  gene symbol: TFAP2A
  hgvsc: ENST00000482890.1:c.142A>C
  hgvsp: ENSP00000418541.1:p.Thr48Pro
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000490875
  gene symbol: TFAP2A
  hgvsc: ENST00000490875.1:n.384A>C
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000368933
  ensembl transcript: ENST00000379613
  gene symbol: TFAP2A
  hgvsc: ENST00000379613.3:c.148A>C
  hgvsp: ENSP00000368933.3:p.Thr50Pro
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000419961
  ensembl transcript: ENST00000498450
  gene symbol: TFAP2A
  hgvsc: ENST00000498450.1:c.52-3395A>C
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000473652
  gene symbol: TFAP2A
  hgvsc: ENST00000473652.1:n.296+43A>C
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000316516
  ensembl transcript: ENST00000319516
  gene symbol: TFAP2A
  hgvsc: ENST00000319516.4:c.130A>C
  hgvsp: ENSP00000316516.4:p.Thr44Pro
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000420568
  ensembl transcript: ENST00000489805
  gene symbol: TFAP2A
  hgvsc: ENST00000489805.1:c.81+43A>C
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000462727
  gene symbol: TFAP2A
  hgvsc: ENST00000462727.1:n.180A>C
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000229950
  ensembl transcript: ENST00000420777
  gene symbol: TFAP2A-AS1
  hgvsc: ENST00000420777.1:n.58+842T>G
  variant of: http://identifiers.org/hgnc/40579
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000418391
  ensembl transcript: ENST00000465858
  gene symbol: TFAP2A
  hgvsc: ENST00000465858.1:c.277A>C
  hgvsp: ENSP00000418391.1:p.Thr93Pro
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000474952
  gene symbol: TFAP2A
  hgvsc: ENST00000474952.1:n.574A>C
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000368928
  ensembl transcript: ENST00000379608
  gene symbol: TFAP2A
  hgvsc: ENST00000379608.3:c.124A>C
  hgvsp: ENSP00000368928.3:p.Thr42Pro
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000368924
  ensembl transcript: ENST00000379604
  gene symbol: TFAP2A
  hgvsc: ENST00000379604.2:c.142A>C
  hgvsp: ENSP00000368924.2:p.Thr48Pro
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000419823
  ensembl transcript: ENST00000488193
  gene symbol: TFAP2A
  hgvsc: ENST00000488193.1:c.105+43A>C
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000497266
  gene symbol: TFAP2A
  hgvsc: ENST00000497266.1:n.213+43A>C
  variant of: http://identifiers.org/hgnc/11742
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7813
  bin: 3.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
hgvs: p.Thr48Pro
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP

6-10410474-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10410474
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 10410474
    reference: chr 6
allele count: 5
allele frequency: 4.691311690748734e-5
allele num: 106580
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000417495
  ensembl transcript: ENST00000466073
  gene symbol: TFAP2A
  hgvsc: ENST00000466073.1:c.140A>C
  hgvsp: ENSP00000417495.1:p.His47Pro
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000418541
  ensembl transcript: ENST00000482890
  gene symbol: TFAP2A
  hgvsc: ENST00000482890.1:c.140A>C
  hgvsp: ENSP00000418541.1:p.His47Pro
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000464323
  gene symbol: TFAP2A
  hgvsc: ENST00000464323.1:n.232A>C
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000368924
  ensembl transcript: ENST00000379604
  gene symbol: TFAP2A
  hgvsc: ENST00000379604.2:c.140A>C
  hgvsp: ENSP00000368924.2:p.His47Pro
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000473652
  gene symbol: TFAP2A
  hgvsc: ENST00000473652.1:n.296+41A>C
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000418391
  ensembl transcript: ENST00000465858
  gene symbol: TFAP2A
  hgvsc: ENST00000465858.1:c.275A>C
  hgvsp: ENSP00000418391.1:p.His92Pro
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000316516
  ensembl transcript: ENST00000319516
  gene symbol: TFAP2A
  hgvsc: ENST00000319516.4:c.128A>C
  hgvsp: ENSP00000316516.4:p.His43Pro
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000419823
  ensembl transcript: ENST00000488193
  gene symbol: TFAP2A
  hgvsc: ENST00000488193.1:c.105+41A>C
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000478375
  gene symbol: TFAP2A
  hgvsc: ENST00000478375.1:n.140A>C
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000490875
  gene symbol: TFAP2A
  hgvsc: ENST00000490875.1:n.382A>C
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000462727
  gene symbol: TFAP2A
  hgvsc: ENST00000462727.1:n.178A>C
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000368928
  ensembl transcript: ENST00000379608
  gene symbol: TFAP2A
  hgvsc: ENST00000379608.3:c.122A>C
  hgvsp: ENSP00000368928.3:p.His41Pro
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000229950
  ensembl transcript: ENST00000420777
  gene symbol: TFAP2A-AS1
  hgvsc: ENST00000420777.1:n.58+844T>G
  variant of: http://identifiers.org/hgnc/40579
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000368933
  ensembl transcript: ENST00000379613
  gene symbol: TFAP2A
  hgvsc: ENST00000379613.3:c.146A>C
  hgvsp: ENSP00000368933.3:p.His49Pro
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000497266
  gene symbol: TFAP2A
  hgvsc: ENST00000497266.1:n.213+41A>C
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000419961
  ensembl transcript: ENST00000498450
  gene symbol: TFAP2A
  hgvsc: ENST00000498450.1:c.52-3397A>C
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000420568
  ensembl transcript: ENST00000489805
  gene symbol: TFAP2A
  hgvsc: ENST00000489805.1:c.81+41A>C
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000474952
  gene symbol: TFAP2A
  hgvsc: ENST00000474952.1:n.572A>C
  variant of: http://identifiers.org/hgnc/11742
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3366
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.His47Pro
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: European (Finnish)
reference allele: T
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: ClippingRankSum

6-10410479-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10410479
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 10410479
    reference: chr 6
allele count: 10
allele frequency: 8.761016978850905e-5
allele num: 114142
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000368924
  ensembl transcript: ENST00000379604
  gene symbol: TFAP2A
  hgvsc: ENST00000379604.2:c.135G>A
  hgvsp: ENST00000379604.2:c.135G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000420568
  ensembl transcript: ENST00000489805
  gene symbol: TFAP2A
  hgvsc: ENST00000489805.1:c.81+36G>A
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000490875
  gene symbol: TFAP2A
  hgvsc: ENST00000490875.1:n.377G>A
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000417495
  ensembl transcript: ENST00000466073
  gene symbol: TFAP2A
  hgvsc: ENST00000466073.1:c.135G>A
  hgvsp: ENST00000466073.1:c.135G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000418391
  ensembl transcript: ENST00000465858
  gene symbol: TFAP2A
  hgvsc: ENST00000465858.1:c.270G>A
  hgvsp: ENST00000465858.1:c.270G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000474952
  gene symbol: TFAP2A
  hgvsc: ENST00000474952.1:n.567G>A
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000368933
  ensembl transcript: ENST00000379613
  gene symbol: TFAP2A
  hgvsc: ENST00000379613.3:c.141G>A
  hgvsp: ENST00000379613.3:c.141G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000419961
  ensembl transcript: ENST00000498450
  gene symbol: TFAP2A
  hgvsc: ENST00000498450.1:c.52-3402G>A
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000473652
  gene symbol: TFAP2A
  hgvsc: ENST00000473652.1:n.296+36G>A
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000418541
  ensembl transcript: ENST00000482890
  gene symbol: TFAP2A
  hgvsc: ENST00000482890.1:c.135G>A
  hgvsp: ENST00000482890.1:c.135G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000462727
  gene symbol: TFAP2A
  hgvsc: ENST00000462727.1:n.173G>A
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000368928
  ensembl transcript: ENST00000379608
  gene symbol: TFAP2A
  hgvsc: ENST00000379608.3:c.117G>A
  hgvsp: ENST00000379608.3:c.117G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000464323
  gene symbol: TFAP2A
  hgvsc: ENST00000464323.1:n.227G>A
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000316516
  ensembl transcript: ENST00000319516
  gene symbol: TFAP2A
  hgvsc: ENST00000319516.4:c.123G>A
  hgvsp: ENST00000319516.4:c.123G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000497266
  gene symbol: TFAP2A
  hgvsc: ENST00000497266.1:n.213+36G>A
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000229950
  ensembl transcript: ENST00000420777
  gene symbol: TFAP2A-AS1
  hgvsc: ENST00000420777.1:n.58+849C>T
  variant of: http://identifiers.org/hgnc/40579
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000419823
  ensembl transcript: ENST00000488193
  gene symbol: TFAP2A
  hgvsc: ENST00000488193.1:c.105+36G>A
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000478375
  gene symbol: TFAP2A
  hgvsc: ENST00000478375.1:n.135G>A
  variant of: http://identifiers.org/hgnc/11742
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2753
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu45Leu
num of homozygotes: 0
population: South Asian
population: Other
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
population: Latino
reference allele: C
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: QD

6-10410480-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10410480
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 10410480
    reference: chr 6
allele count: 4
allele frequency: 3.505389536412234e-5
allele num: 114110
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000418541
  ensembl transcript: ENST00000482890
  gene symbol: TFAP2A
  hgvsc: ENST00000482890.1:c.134T>C
  hgvsp: ENSP00000418541.1:p.Leu45Pro
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000419961
  ensembl transcript: ENST00000498450
  gene symbol: TFAP2A
  hgvsc: ENST00000498450.1:c.52-3403T>C
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000419823
  ensembl transcript: ENST00000488193
  gene symbol: TFAP2A
  hgvsc: ENST00000488193.1:c.105+35T>C
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000462727
  gene symbol: TFAP2A
  hgvsc: ENST00000462727.1:n.172T>C
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000497266
  gene symbol: TFAP2A
  hgvsc: ENST00000497266.1:n.213+35T>C
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000368933
  ensembl transcript: ENST00000379613
  gene symbol: TFAP2A
  hgvsc: ENST00000379613.3:c.140T>C
  hgvsp: ENSP00000368933.3:p.Leu47Pro
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000368924
  ensembl transcript: ENST00000379604
  gene symbol: TFAP2A
  hgvsc: ENST00000379604.2:c.134T>C
  hgvsp: ENSP00000368924.2:p.Leu45Pro
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000420568
  ensembl transcript: ENST00000489805
  gene symbol: TFAP2A
  hgvsc: ENST00000489805.1:c.81+35T>C
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000417495
  ensembl transcript: ENST00000466073
  gene symbol: TFAP2A
  hgvsc: ENST00000466073.1:c.134T>C
  hgvsp: ENSP00000417495.1:p.Leu45Pro
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000229950
  ensembl transcript: ENST00000420777
  gene symbol: TFAP2A-AS1
  hgvsc: ENST00000420777.1:n.58+850A>G
  variant of: http://identifiers.org/hgnc/40579
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000418391
  ensembl transcript: ENST00000465858
  gene symbol: TFAP2A
  hgvsc: ENST00000465858.1:c.269T>C
  hgvsp: ENSP00000418391.1:p.Leu90Pro
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000368928
  ensembl transcript: ENST00000379608
  gene symbol: TFAP2A
  hgvsc: ENST00000379608.3:c.116T>C
  hgvsp: ENSP00000368928.3:p.Leu39Pro
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000464323
  gene symbol: TFAP2A
  hgvsc: ENST00000464323.1:n.226T>C
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000478375
  gene symbol: TFAP2A
  hgvsc: ENST00000478375.1:n.134T>C
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000473652
  gene symbol: TFAP2A
  hgvsc: ENST00000473652.1:n.296+35T>C
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000490875
  gene symbol: TFAP2A
  hgvsc: ENST00000490875.1:n.376T>C
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000316516
  ensembl transcript: ENST00000319516
  gene symbol: TFAP2A
  hgvsc: ENST00000319516.4:c.122T>C
  hgvsp: ENSP00000316516.4:p.Leu41Pro
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000474952
  gene symbol: TFAP2A
  hgvsc: ENST00000474952.1:n.566T>C
  variant of: http://identifiers.org/hgnc/11742
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8152
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu45Pro
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: A
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum

6-10410481-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10410481
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 10410481
    reference: chr 6
allele count: 1
allele frequency: 8.768237934904602e-6
allele num: 114048
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000418541
  ensembl transcript: ENST00000482890
  gene symbol: TFAP2A
  hgvsc: ENST00000482890.1:c.133C>T
  hgvsp: ENST00000482890.1:c.133C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000462727
  gene symbol: TFAP2A
  hgvsc: ENST00000462727.1:n.171C>T
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000419823
  ensembl transcript: ENST00000488193
  gene symbol: TFAP2A
  hgvsc: ENST00000488193.1:c.105+34C>T
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000497266
  gene symbol: TFAP2A
  hgvsc: ENST00000497266.1:n.213+34C>T
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000368933
  ensembl transcript: ENST00000379613
  gene symbol: TFAP2A
  hgvsc: ENST00000379613.3:c.139C>T
  hgvsp: ENST00000379613.3:c.139C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000229950
  ensembl transcript: ENST00000420777
  gene symbol: TFAP2A-AS1
  hgvsc: ENST00000420777.1:n.58+851G>A
  variant of: http://identifiers.org/hgnc/40579
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000420568
  ensembl transcript: ENST00000489805
  gene symbol: TFAP2A
  hgvsc: ENST00000489805.1:c.81+34C>T
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000316516
  ensembl transcript: ENST00000319516
  gene symbol: TFAP2A
  hgvsc: ENST00000319516.4:c.121C>T
  hgvsp: ENST00000319516.4:c.121C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000418391
  ensembl transcript: ENST00000465858
  gene symbol: TFAP2A
  hgvsc: ENST00000465858.1:c.268C>T
  hgvsp: ENST00000465858.1:c.268C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000473652
  gene symbol: TFAP2A
  hgvsc: ENST00000473652.1:n.296+34C>T
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000368928
  ensembl transcript: ENST00000379608
  gene symbol: TFAP2A
  hgvsc: ENST00000379608.3:c.115C>T
  hgvsp: ENST00000379608.3:c.115C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000368924
  ensembl transcript: ENST00000379604
  gene symbol: TFAP2A
  hgvsc: ENST00000379604.2:c.133C>T
  hgvsp: ENST00000379604.2:c.133C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000478375
  gene symbol: TFAP2A
  hgvsc: ENST00000478375.1:n.133C>T
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000464323
  gene symbol: TFAP2A
  hgvsc: ENST00000464323.1:n.225C>T
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000490875
  gene symbol: TFAP2A
  hgvsc: ENST00000490875.1:n.375C>T
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000417495
  ensembl transcript: ENST00000466073
  gene symbol: TFAP2A
  hgvsc: ENST00000466073.1:c.133C>T
  hgvsp: ENST00000466073.1:c.133C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000474952
  gene symbol: TFAP2A
  hgvsc: ENST00000474952.1:n.565C>T
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000419961
  ensembl transcript: ENST00000498450
  gene symbol: TFAP2A
  hgvsc: ENST00000498450.1:c.52-3404C>T
  variant of: http://identifiers.org/hgnc/11742
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15475
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1260
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu45Leu
num of homozygotes: 0
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
population: East Asian
reference allele: G
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum

http://identifiers.org/exac.variant/6-10410490-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10410490
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 10410490
    reference: chr 6
allele count: 1
allele frequency: 8.802351988451315e-6
allele num: 113606
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000419961
  ensembl transcript: ENST00000498450
  gene symbol: TFAP2A
  hgvsc: ENST00000498450.1:c.52-3413G>T
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000368924
  ensembl transcript: ENST00000379604
  gene symbol: TFAP2A
  hgvsc: ENST00000379604.2:c.124G>T
  hgvsp: ENSP00000368924.2:p.Ala42Ser
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000462727
  gene symbol: TFAP2A
  hgvsc: ENST00000462727.1:n.162G>T
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000417495
  ensembl transcript: ENST00000466073
  gene symbol: TFAP2A
  hgvsc: ENST00000466073.1:c.124G>T
  hgvsp: ENSP00000417495.1:p.Ala42Ser
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000418391
  ensembl transcript: ENST00000465858
  gene symbol: TFAP2A
  hgvsc: ENST00000465858.1:c.259G>T
  hgvsp: ENSP00000418391.1:p.Ala87Ser
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000419823
  ensembl transcript: ENST00000488193
  gene symbol: TFAP2A
  hgvsc: ENST00000488193.1:c.105+25G>T
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000490875
  gene symbol: TFAP2A
  hgvsc: ENST00000490875.1:n.366G>T
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000418541
  ensembl transcript: ENST00000482890
  gene symbol: TFAP2A
  hgvsc: ENST00000482890.1:c.124G>T
  hgvsp: ENSP00000418541.1:p.Ala42Ser
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000474952
  gene symbol: TFAP2A
  hgvsc: ENST00000474952.1:n.556G>T
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000229950
  ensembl transcript: ENST00000420777
  gene symbol: TFAP2A-AS1
  hgvsc: ENST00000420777.1:n.58+860C>A
  variant of: http://identifiers.org/hgnc/40579
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000420568
  ensembl transcript: ENST00000489805
  gene symbol: TFAP2A
  hgvsc: ENST00000489805.1:c.81+25G>T
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000473652
  gene symbol: TFAP2A
  hgvsc: ENST00000473652.1:n.296+25G>T
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000368928
  ensembl transcript: ENST00000379608
  gene symbol: TFAP2A
  hgvsc: ENST00000379608.3:c.106G>T
  hgvsp: ENSP00000368928.3:p.Ala36Ser
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000464323
  gene symbol: TFAP2A
  hgvsc: ENST00000464323.1:n.216G>T
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000497266
  gene symbol: TFAP2A
  hgvsc: ENST00000497266.1:n.213+25G>T
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000316516
  ensembl transcript: ENST00000319516
  gene symbol: TFAP2A
  hgvsc: ENST00000319516.4:c.112G>T
  hgvsp: ENSP00000316516.4:p.Ala38Ser
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000478375
  gene symbol: TFAP2A
  hgvsc: ENST00000478375.1:n.124G>T
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000368933
  ensembl transcript: ENST00000379613
  gene symbol: TFAP2A
  hgvsc: ENST00000379613.3:c.130G>T
  hgvsp: ENSP00000368933.3:p.Ala44Ser
  variant of: http://identifiers.org/hgnc/11742
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1116
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala42Ser
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: Other
population: African
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: C
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: ClippingRankSum

http://identifiers.org/exac.variant/6-10410494-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10410494
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 10410494
    reference: chr 6
allele count: 1
allele frequency: 8.824567596187787e-6
allele num: 113320
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000229950
  ensembl transcript: ENST00000420777
  gene symbol: TFAP2A-AS1
  hgvsc: ENST00000420777.1:n.58+864C>A
  variant of: http://identifiers.org/hgnc/40579
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000490875
  gene symbol: TFAP2A
  hgvsc: ENST00000490875.1:n.362G>T
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000419823
  ensembl transcript: ENST00000488193
  gene symbol: TFAP2A
  hgvsc: ENST00000488193.1:c.105+21G>T
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000368928
  ensembl transcript: ENST00000379608
  gene symbol: TFAP2A
  hgvsc: ENST00000379608.3:c.102G>T
  hgvsp: ENST00000379608.3:c.102G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000418541
  ensembl transcript: ENST00000482890
  gene symbol: TFAP2A
  hgvsc: ENST00000482890.1:c.120G>T
  hgvsp: ENST00000482890.1:c.120G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000368933
  ensembl transcript: ENST00000379613
  gene symbol: TFAP2A
  hgvsc: ENST00000379613.3:c.126G>T
  hgvsp: ENST00000379613.3:c.126G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000368924
  ensembl transcript: ENST00000379604
  gene symbol: TFAP2A
  hgvsc: ENST00000379604.2:c.120G>T
  hgvsp: ENST00000379604.2:c.120G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000420568
  ensembl transcript: ENST00000489805
  gene symbol: TFAP2A
  hgvsc: ENST00000489805.1:c.81+21G>T
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000418391
  ensembl transcript: ENST00000465858
  gene symbol: TFAP2A
  hgvsc: ENST00000465858.1:c.255G>T
  hgvsp: ENST00000465858.1:c.255G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000473652
  gene symbol: TFAP2A
  hgvsc: ENST00000473652.1:n.296+21G>T
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000316516
  ensembl transcript: ENST00000319516
  gene symbol: TFAP2A
  hgvsc: ENST00000319516.4:c.108G>T
  hgvsp: ENST00000319516.4:c.108G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000497266
  gene symbol: TFAP2A
  hgvsc: ENST00000497266.1:n.213+21G>T
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000417495
  ensembl transcript: ENST00000466073
  gene symbol: TFAP2A
  hgvsc: ENST00000466073.1:c.120G>T
  hgvsp: ENST00000466073.1:c.120G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000464323
  gene symbol: TFAP2A
  hgvsc: ENST00000464323.1:n.212G>T
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000478375
  gene symbol: TFAP2A
  hgvsc: ENST00000478375.1:n.120G>T
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000419961
  ensembl transcript: ENST00000498450
  gene symbol: TFAP2A
  hgvsc: ENST00000498450.1:c.52-3417G>T
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000474952
  gene symbol: TFAP2A
  hgvsc: ENST00000474952.1:n.552G>T
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000462727
  gene symbol: TFAP2A
  hgvsc: ENST00000462727.1:n.158G>T
  variant of: http://identifiers.org/hgnc/11742
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 27587
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15738
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr40Thr
num of homozygotes: 0
population: South Asian
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Other
population: Latino
reference allele: C
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP

6-10410503-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10410503
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 10410503
    reference: chr 6
allele count: 1
allele frequency: 8.903292437543403e-6
allele num: 112318
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000419961
  ensembl transcript: ENST00000498450
  gene symbol: TFAP2A
  hgvsc: ENST00000498450.1:c.52-3426T>A
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000419823
  ensembl transcript: ENST00000488193
  gene symbol: TFAP2A
  hgvsc: ENST00000488193.1:c.105+12T>A
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000368924
  ensembl transcript: ENST00000379604
  gene symbol: TFAP2A
  hgvsc: ENST00000379604.2:c.111T>A
  hgvsp: ENST00000379604.2:c.111T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000474952
  gene symbol: TFAP2A
  hgvsc: ENST00000474952.1:n.543T>A
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000478375
  gene symbol: TFAP2A
  hgvsc: ENST00000478375.1:n.111T>A
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000316516
  ensembl transcript: ENST00000319516
  gene symbol: TFAP2A
  hgvsc: ENST00000319516.4:c.99T>A
  hgvsp: ENST00000319516.4:c.99T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000417495
  ensembl transcript: ENST00000466073
  gene symbol: TFAP2A
  hgvsc: ENST00000466073.1:c.111T>A
  hgvsp: ENST00000466073.1:c.111T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000490875
  gene symbol: TFAP2A
  hgvsc: ENST00000490875.1:n.353T>A
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000497266
  gene symbol: TFAP2A
  hgvsc: ENST00000497266.1:n.213+12T>A
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000368933
  ensembl transcript: ENST00000379613
  gene symbol: TFAP2A
  hgvsc: ENST00000379613.3:c.117T>A
  hgvsp: ENST00000379613.3:c.117T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000418541
  ensembl transcript: ENST00000482890
  gene symbol: TFAP2A
  hgvsc: ENST00000482890.1:c.111T>A
  hgvsp: ENST00000482890.1:c.111T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000462727
  gene symbol: TFAP2A
  hgvsc: ENST00000462727.1:n.149T>A
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000464323
  gene symbol: TFAP2A
  hgvsc: ENST00000464323.1:n.203T>A
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000368928
  ensembl transcript: ENST00000379608
  gene symbol: TFAP2A
  hgvsc: ENST00000379608.3:c.93T>A
  hgvsp: ENST00000379608.3:c.93T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000418391
  ensembl transcript: ENST00000465858
  gene symbol: TFAP2A
  hgvsc: ENST00000465858.1:c.246T>A
  hgvsp: ENST00000465858.1:c.246T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000473652
  gene symbol: TFAP2A
  hgvsc: ENST00000473652.1:n.296+12T>A
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000229950
  ensembl transcript: ENST00000420777
  gene symbol: TFAP2A-AS1
  hgvsc: ENST00000420777.1:n.58+873A>T
  variant of: http://identifiers.org/hgnc/40579
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000420568
  ensembl transcript: ENST00000489805
  gene symbol: TFAP2A
  hgvsc: ENST00000489805.1:c.81+12T>A
  variant of: http://identifiers.org/hgnc/11742
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16146
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4066
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser37Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: African
population: Latino
population: Other
population: East Asian
reference allele: A
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff

6-10410504-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10410504
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 10410504
    reference: chr 6
allele count: 1
allele frequency: 8.901865831078194e-6
allele num: 112336
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000497266
  gene symbol: TFAP2A
  hgvsc: ENST00000497266.1:n.213+11C>T
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000368928
  ensembl transcript: ENST00000379608
  gene symbol: TFAP2A
  hgvsc: ENST00000379608.3:c.92C>T
  hgvsp: ENSP00000368928.3:p.Ser31Phe
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000490875
  gene symbol: TFAP2A
  hgvsc: ENST00000490875.1:n.352C>T
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000473652
  gene symbol: TFAP2A
  hgvsc: ENST00000473652.1:n.296+11C>T
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000462727
  gene symbol: TFAP2A
  hgvsc: ENST00000462727.1:n.148C>T
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000419961
  ensembl transcript: ENST00000498450
  gene symbol: TFAP2A
  hgvsc: ENST00000498450.1:c.52-3427C>T
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000464323
  gene symbol: TFAP2A
  hgvsc: ENST00000464323.1:n.202C>T
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000368933
  ensembl transcript: ENST00000379613
  gene symbol: TFAP2A
  hgvsc: ENST00000379613.3:c.116C>T
  hgvsp: ENSP00000368933.3:p.Ser39Phe
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000368924
  ensembl transcript: ENST00000379604
  gene symbol: TFAP2A
  hgvsc: ENST00000379604.2:c.110C>T
  hgvsp: ENSP00000368924.2:p.Ser37Phe
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000417495
  ensembl transcript: ENST00000466073
  gene symbol: TFAP2A
  hgvsc: ENST00000466073.1:c.110C>T
  hgvsp: ENSP00000417495.1:p.Ser37Phe
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000418391
  ensembl transcript: ENST00000465858
  gene symbol: TFAP2A
  hgvsc: ENST00000465858.1:c.245C>T
  hgvsp: ENSP00000418391.1:p.Ser82Phe
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000229950
  ensembl transcript: ENST00000420777
  gene symbol: TFAP2A-AS1
  hgvsc: ENST00000420777.1:n.58+874G>A
  variant of: http://identifiers.org/hgnc/40579
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000474952
  gene symbol: TFAP2A
  hgvsc: ENST00000474952.1:n.542C>T
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000420568
  ensembl transcript: ENST00000489805
  gene symbol: TFAP2A
  hgvsc: ENST00000489805.1:c.81+11C>T
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000418541
  ensembl transcript: ENST00000482890
  gene symbol: TFAP2A
  hgvsc: ENST00000482890.1:c.110C>T
  hgvsp: ENSP00000418541.1:p.Ser37Phe
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000316516
  ensembl transcript: ENST00000319516
  gene symbol: TFAP2A
  hgvsc: ENST00000319516.4:c.98C>T
  hgvsp: ENSP00000316516.4:p.Ser33Phe
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000478375
  gene symbol: TFAP2A
  hgvsc: ENST00000478375.1:n.110C>T
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000419823
  ensembl transcript: ENST00000488193
  gene symbol: TFAP2A
  hgvsc: ENST00000488193.1:c.105+11C>T
  variant of: http://identifiers.org/hgnc/11742
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7277
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser37Phe
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
population: African
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: BaseQRankSum

http://identifiers.org/exac.variant/6-10410509-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10410509
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 10410509
    reference: chr 6
allele count: 1
allele frequency: 8.982788976321368e-6
allele num: 111324
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000419961
  ensembl transcript: ENST00000498450
  gene symbol: TFAP2A
  hgvsc: ENST00000498450.1:c.52-3432T>G
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000417495
  ensembl transcript: ENST00000466073
  gene symbol: TFAP2A
  hgvsc: ENST00000466073.1:c.105T>G
  hgvsp: ENST00000466073.1:c.105T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000419823
  ensembl transcript: ENST00000488193
  gene symbol: TFAP2A
  hgvsc: ENST00000488193.1:c.105+6T>G
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000478375
  gene symbol: TFAP2A
  hgvsc: ENST00000478375.1:n.105T>G
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000473652
  gene symbol: TFAP2A
  hgvsc: ENST00000473652.1:n.296+6T>G
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000368924
  ensembl transcript: ENST00000379604
  gene symbol: TFAP2A
  hgvsc: ENST00000379604.2:c.105T>G
  hgvsp: ENST00000379604.2:c.105T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000497266
  gene symbol: TFAP2A
  hgvsc: ENST00000497266.1:n.213+6T>G
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000368928
  ensembl transcript: ENST00000379608
  gene symbol: TFAP2A
  hgvsc: ENST00000379608.3:c.87T>G
  hgvsp: ENST00000379608.3:c.87T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000462727
  gene symbol: TFAP2A
  hgvsc: ENST00000462727.1:n.143T>G
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000316516
  ensembl transcript: ENST00000319516
  gene symbol: TFAP2A
  hgvsc: ENST00000319516.4:c.93T>G
  hgvsp: ENST00000319516.4:c.93T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000368933
  ensembl transcript: ENST00000379613
  gene symbol: TFAP2A
  hgvsc: ENST00000379613.3:c.111T>G
  hgvsp: ENST00000379613.3:c.111T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000420568
  ensembl transcript: ENST00000489805
  gene symbol: TFAP2A
  hgvsc: ENST00000489805.1:c.81+6T>G
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000418391
  ensembl transcript: ENST00000465858
  gene symbol: TFAP2A
  hgvsc: ENST00000465858.1:c.240T>G
  hgvsp: ENST00000465858.1:c.240T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000229950
  ensembl transcript: ENST00000420777
  gene symbol: TFAP2A-AS1
  hgvsc: ENST00000420777.1:n.58+879A>C
  variant of: http://identifiers.org/hgnc/40579
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000474952
  gene symbol: TFAP2A
  hgvsc: ENST00000474952.1:n.537T>G
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000418541
  ensembl transcript: ENST00000482890
  gene symbol: TFAP2A
  hgvsc: ENST00000482890.1:c.105T>G
  hgvsp: ENST00000482890.1:c.105T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000490875
  gene symbol: TFAP2A
  hgvsc: ENST00000490875.1:n.347T>G
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000464323
  gene symbol: TFAP2A
  hgvsc: ENST00000464323.1:n.197T>G
  variant of: http://identifiers.org/hgnc/11742
canonical: false
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6986
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.105+6T>G
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: BaseQRankSum

http://identifiers.org/exac.variant/6-10410510-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10410510
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 10410510
    reference: chr 6
allele count: 5
allele frequency: 4.507672057842448e-5
allele num: 110922
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000316516
  ensembl transcript: ENST00000319516
  gene symbol: TFAP2A
  hgvsc: ENST00000319516.4:c.92G>T
  hgvsp: ENSP00000316516.4:p.Gly31Val
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000464323
  gene symbol: TFAP2A
  hgvsc: ENST00000464323.1:n.196G>T
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000462727
  gene symbol: TFAP2A
  hgvsc: ENST00000462727.1:n.142G>T
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000418541
  ensembl transcript: ENST00000482890
  gene symbol: TFAP2A
  hgvsc: ENST00000482890.1:c.104G>T
  hgvsp: ENSP00000418541.1:p.Gly35Val
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000368924
  ensembl transcript: ENST00000379604
  gene symbol: TFAP2A
  hgvsc: ENST00000379604.2:c.104G>T
  hgvsp: ENSP00000368924.2:p.Gly35Val
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000417495
  ensembl transcript: ENST00000466073
  gene symbol: TFAP2A
  hgvsc: ENST00000466073.1:c.104G>T
  hgvsp: ENSP00000417495.1:p.Gly35Val
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000418391
  ensembl transcript: ENST00000465858
  gene symbol: TFAP2A
  hgvsc: ENST00000465858.1:c.239G>T
  hgvsp: ENSP00000418391.1:p.Gly80Val
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000419823
  ensembl transcript: ENST00000488193
  gene symbol: TFAP2A
  hgvsc: ENST00000488193.1:c.105+5G>T
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000490875
  gene symbol: TFAP2A
  hgvsc: ENST00000490875.1:n.346G>T
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000478375
  gene symbol: TFAP2A
  hgvsc: ENST00000478375.1:n.104G>T
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000419961
  ensembl transcript: ENST00000498450
  gene symbol: TFAP2A
  hgvsc: ENST00000498450.1:c.52-3433G>T
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000473652
  gene symbol: TFAP2A
  hgvsc: ENST00000473652.1:n.296+5G>T
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000497266
  gene symbol: TFAP2A
  hgvsc: ENST00000497266.1:n.213+5G>T
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000368928
  ensembl transcript: ENST00000379608
  gene symbol: TFAP2A
  hgvsc: ENST00000379608.3:c.86G>T
  hgvsp: ENSP00000368928.3:p.Gly29Val
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000368933
  ensembl transcript: ENST00000379613
  gene symbol: TFAP2A
  hgvsc: ENST00000379613.3:c.110G>T
  hgvsp: ENSP00000368933.3:p.Gly37Val
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000474952
  gene symbol: TFAP2A
  hgvsc: ENST00000474952.1:n.536G>T
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000229950
  ensembl transcript: ENST00000420777
  gene symbol: TFAP2A-AS1
  hgvsc: ENST00000420777.1:n.58+880C>A
  variant of: http://identifiers.org/hgnc/40579
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000420568
  ensembl transcript: ENST00000489805
  gene symbol: TFAP2A
  hgvsc: ENST00000489805.1:c.81+5G>T
  variant of: http://identifiers.org/hgnc/11742
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6917
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Gly35Val
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: African
population: Latino
population: East Asian
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD

http://identifiers.org/exac.variant/6-10410513-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10410513
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 10410513
    reference: chr 6
allele count: 1
allele frequency: 9.050592813829306e-6
allele num: 110490
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000474952
  gene symbol: TFAP2A
  hgvsc: ENST00000474952.1:n.533T>G
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000417495
  ensembl transcript: ENST00000466073
  gene symbol: TFAP2A
  hgvsc: ENST00000466073.1:c.101T>G
  hgvsp: ENSP00000417495.1:p.Val34Gly
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000497266
  gene symbol: TFAP2A
  hgvsc: ENST00000497266.1:n.213+2T>G
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000419823
  ensembl transcript: ENST00000488193
  gene symbol: TFAP2A
  hgvsc: ENST00000488193.1:c.105+2T>G
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000464323
  gene symbol: TFAP2A
  hgvsc: ENST00000464323.1:n.193T>G
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000368933
  ensembl transcript: ENST00000379613
  gene symbol: TFAP2A
  hgvsc: ENST00000379613.3:c.107T>G
  hgvsp: ENSP00000368933.3:p.Val36Gly
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000368928
  ensembl transcript: ENST00000379608
  gene symbol: TFAP2A
  hgvsc: ENST00000379608.3:c.83T>G
  hgvsp: ENSP00000368928.3:p.Val28Gly
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000420568
  ensembl transcript: ENST00000489805
  gene symbol: TFAP2A
  hgvsc: ENST00000489805.1:c.81+2T>G
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000418541
  ensembl transcript: ENST00000482890
  gene symbol: TFAP2A
  hgvsc: ENST00000482890.1:c.101T>G
  hgvsp: ENSP00000418541.1:p.Val34Gly
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000473652
  gene symbol: TFAP2A
  hgvsc: ENST00000473652.1:n.296+2T>G
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000316516
  ensembl transcript: ENST00000319516
  gene symbol: TFAP2A
  hgvsc: ENST00000319516.4:c.89T>G
  hgvsp: ENSP00000316516.4:p.Val30Gly
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000490875
  gene symbol: TFAP2A
  hgvsc: ENST00000490875.1:n.343T>G
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000368924
  ensembl transcript: ENST00000379604
  gene symbol: TFAP2A
  hgvsc: ENST00000379604.2:c.101T>G
  hgvsp: ENSP00000368924.2:p.Val34Gly
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000418391
  ensembl transcript: ENST00000465858
  gene symbol: TFAP2A
  hgvsc: ENST00000465858.1:c.236T>G
  hgvsp: ENSP00000418391.1:p.Val79Gly
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000229950
  ensembl transcript: ENST00000420777
  gene symbol: TFAP2A-AS1
  hgvsc: ENST00000420777.1:n.58+883A>C
  variant of: http://identifiers.org/hgnc/40579
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000419961
  ensembl transcript: ENST00000498450
  gene symbol: TFAP2A
  hgvsc: ENST00000498450.1:c.52-3436T>G
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000462727
  gene symbol: TFAP2A
  hgvsc: ENST00000462727.1:n.139T>G
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000478375
  gene symbol: TFAP2A
  hgvsc: ENST00000478375.1:n.101T>G
  variant of: http://identifiers.org/hgnc/11742
canonical: false
consequence: splice donor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.105+2T>G
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
reference allele: A
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ

6-10410517-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10410517
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 10410517
    reference: chr 6
allele count: 3
allele frequency: 2.737476047084588e-5
allele num: 109590
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000473652
  gene symbol: TFAP2A
  hgvsc: ENST00000473652.1:n.294A>G
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000418391
  ensembl transcript: ENST00000465858
  gene symbol: TFAP2A
  hgvsc: ENST00000465858.1:c.232A>G
  hgvsp: ENSP00000418391.1:p.Thr78Ala
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000417495
  ensembl transcript: ENST00000466073
  gene symbol: TFAP2A
  hgvsc: ENST00000466073.1:c.97A>G
  hgvsp: ENSP00000417495.1:p.Thr33Ala
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000474952
  gene symbol: TFAP2A
  hgvsc: ENST00000474952.1:n.529A>G
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000368933
  ensembl transcript: ENST00000379613
  gene symbol: TFAP2A
  hgvsc: ENST00000379613.3:c.103A>G
  hgvsp: ENSP00000368933.3:p.Thr35Ala
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000478375
  gene symbol: TFAP2A
  hgvsc: ENST00000478375.1:n.97A>G
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000490875
  gene symbol: TFAP2A
  hgvsc: ENST00000490875.1:n.339A>G
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000420568
  ensembl transcript: ENST00000489805
  gene symbol: TFAP2A
  hgvsc: ENST00000489805.1:c.79A>G
  hgvsp: ENSP00000420568.1:p.Thr27Ala
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000368928
  ensembl transcript: ENST00000379608
  gene symbol: TFAP2A
  hgvsc: ENST00000379608.3:c.79A>G
  hgvsp: ENSP00000368928.3:p.Thr27Ala
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000368924
  ensembl transcript: ENST00000379604
  gene symbol: TFAP2A
  hgvsc: ENST00000379604.2:c.97A>G
  hgvsp: ENSP00000368924.2:p.Thr33Ala
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000316516
  ensembl transcript: ENST00000319516
  gene symbol: TFAP2A
  hgvsc: ENST00000319516.4:c.85A>G
  hgvsp: ENSP00000316516.4:p.Thr29Ala
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000419823
  ensembl transcript: ENST00000488193
  gene symbol: TFAP2A
  hgvsc: ENST00000488193.1:c.103A>G
  hgvsp: ENSP00000419823.1:p.Thr35Ala
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000418541
  ensembl transcript: ENST00000482890
  gene symbol: TFAP2A
  hgvsc: ENST00000482890.1:c.97A>G
  hgvsp: ENSP00000418541.1:p.Thr33Ala
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000462727
  gene symbol: TFAP2A
  hgvsc: ENST00000462727.1:n.135A>G
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000497266
  gene symbol: TFAP2A
  hgvsc: ENST00000497266.1:n.211A>G
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000419961
  ensembl transcript: ENST00000498450
  gene symbol: TFAP2A
  hgvsc: ENST00000498450.1:c.52-3440A>G
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000229950
  ensembl transcript: ENST00000420777
  gene symbol: TFAP2A-AS1
  hgvsc: ENST00000420777.1:n.58+887T>C
  variant of: http://identifiers.org/hgnc/40579
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000464323
  gene symbol: TFAP2A
  hgvsc: ENST00000464323.1:n.189A>G
  variant of: http://identifiers.org/hgnc/11742
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4707
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 931
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr33Ala
num of homozygotes: 0
population: Latino
population: East Asian
population: Other
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD

6-10410533-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10410533
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 10410533
    reference: chr 6
allele count: 2
allele frequency: 1.930613742108616e-5
allele num: 103594
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000462727
  gene symbol: TFAP2A
  hgvsc: ENST00000462727.1:n.119G>A
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000316516
  ensembl transcript: ENST00000319516
  gene symbol: TFAP2A
  hgvsc: ENST00000319516.4:c.69G>A
  hgvsp: ENST00000319516.4:c.69G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000478375
  gene symbol: TFAP2A
  hgvsc: ENST00000478375.1:n.81G>A
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000420568
  ensembl transcript: ENST00000489805
  gene symbol: TFAP2A
  hgvsc: ENST00000489805.1:c.63G>A
  hgvsp: ENST00000489805.1:c.63G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000368933
  ensembl transcript: ENST00000379613
  gene symbol: TFAP2A
  hgvsc: ENST00000379613.3:c.87G>A
  hgvsp: ENST00000379613.3:c.87G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000474952
  gene symbol: TFAP2A
  hgvsc: ENST00000474952.1:n.513G>A
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000473652
  gene symbol: TFAP2A
  hgvsc: ENST00000473652.1:n.278G>A
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000418391
  ensembl transcript: ENST00000465858
  gene symbol: TFAP2A
  hgvsc: ENST00000465858.1:c.216G>A
  hgvsp: ENST00000465858.1:c.216G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000497266
  gene symbol: TFAP2A
  hgvsc: ENST00000497266.1:n.195G>A
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000417495
  ensembl transcript: ENST00000466073
  gene symbol: TFAP2A
  hgvsc: ENST00000466073.1:c.81G>A
  hgvsp: ENST00000466073.1:c.81G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000419823
  ensembl transcript: ENST00000488193
  gene symbol: TFAP2A
  hgvsc: ENST00000488193.1:c.87G>A
  hgvsp: ENST00000488193.1:c.87G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000368924
  ensembl transcript: ENST00000379604
  gene symbol: TFAP2A
  hgvsc: ENST00000379604.2:c.81G>A
  hgvsp: ENST00000379604.2:c.81G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000418541
  ensembl transcript: ENST00000482890
  gene symbol: TFAP2A
  hgvsc: ENST00000482890.1:c.81G>A
  hgvsp: ENST00000482890.1:c.81G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000368928
  ensembl transcript: ENST00000379608
  gene symbol: TFAP2A
  hgvsc: ENST00000379608.3:c.63G>A
  hgvsp: ENST00000379608.3:c.63G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000490875
  gene symbol: TFAP2A
  hgvsc: ENST00000490875.1:n.323G>A
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000464323
  gene symbol: TFAP2A
  hgvsc: ENST00000464323.1:n.173G>A
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000229950
  ensembl transcript: ENST00000420777
  gene symbol: TFAP2A-AS1
  hgvsc: ENST00000420777.1:n.58+903C>T
  variant of: http://identifiers.org/hgnc/40579
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000419961
  ensembl transcript: ENST00000498450
  gene symbol: TFAP2A
  hgvsc: ENST00000498450.1:c.52-3456G>A
  variant of: http://identifiers.org/hgnc/11742
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5186
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg27Arg
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: East Asian
population: African
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum

http://identifiers.org/exac.variant/6-10410555-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10410555
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 10410555
    reference: chr 6
allele count: 8
allele frequency: 8.469372631222343e-5
allele num: 94458
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000464323
  gene symbol: TFAP2A
  hgvsc: ENST00000464323.1:n.151G>T
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000316516
  ensembl transcript: ENST00000319516
  gene symbol: TFAP2A
  hgvsc: ENST00000319516.4:c.47G>T
  hgvsp: ENSP00000316516.4:p.Gly16Val
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000418391
  ensembl transcript: ENST00000465858
  gene symbol: TFAP2A
  hgvsc: ENST00000465858.1:c.194G>T
  hgvsp: ENSP00000418391.1:p.Gly65Val
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000368933
  ensembl transcript: ENST00000379613
  gene symbol: TFAP2A
  hgvsc: ENST00000379613.3:c.65G>T
  hgvsp: ENSP00000368933.3:p.Gly22Val
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000497266
  gene symbol: TFAP2A
  hgvsc: ENST00000497266.1:n.173G>T
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000229950
  ensembl transcript: ENST00000420777
  gene symbol: TFAP2A-AS1
  hgvsc: ENST00000420777.1:n.58+925C>A
  variant of: http://identifiers.org/hgnc/40579
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000462727
  gene symbol: TFAP2A
  hgvsc: ENST00000462727.1:n.97G>T
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000419961
  ensembl transcript: ENST00000498450
  gene symbol: TFAP2A
  hgvsc: ENST00000498450.1:c.52-3478G>T
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000419823
  ensembl transcript: ENST00000488193
  gene symbol: TFAP2A
  hgvsc: ENST00000488193.1:c.65G>T
  hgvsp: ENSP00000419823.1:p.Gly22Val
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000420568
  ensembl transcript: ENST00000489805
  gene symbol: TFAP2A
  hgvsc: ENST00000489805.1:c.41G>T
  hgvsp: ENSP00000420568.1:p.Gly14Val
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000474952
  gene symbol: TFAP2A
  hgvsc: ENST00000474952.1:n.491G>T
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000418541
  ensembl transcript: ENST00000482890
  gene symbol: TFAP2A
  hgvsc: ENST00000482890.1:c.59G>T
  hgvsp: ENSP00000418541.1:p.Gly20Val
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000417495
  ensembl transcript: ENST00000466073
  gene symbol: TFAP2A
  hgvsc: ENST00000466073.1:c.59G>T
  hgvsp: ENSP00000417495.1:p.Gly20Val
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000473652
  gene symbol: TFAP2A
  hgvsc: ENST00000473652.1:n.256G>T
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000368928
  ensembl transcript: ENST00000379608
  gene symbol: TFAP2A
  hgvsc: ENST00000379608.3:c.41G>T
  hgvsp: ENSP00000368928.3:p.Gly14Val
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000490875
  gene symbol: TFAP2A
  hgvsc: ENST00000490875.1:n.301G>T
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000478375
  gene symbol: TFAP2A
  hgvsc: ENST00000478375.1:n.59G>T
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000368924
  ensembl transcript: ENST00000379604
  gene symbol: TFAP2A
  hgvsc: ENST00000379604.2:c.59G>T
  hgvsp: ENSP00000368924.2:p.Gly20Val
  variant of: http://identifiers.org/hgnc/11742
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12283
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2289
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly20Val
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Other
population: Latino
population: African
population: East Asian
reference allele: C
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum

6-10410555-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10410555
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 10410555
    reference: chr 6
allele count: 1
allele frequency: 1.058671578902793e-5
allele num: 94458
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000473652
  gene symbol: TFAP2A
  hgvsc: ENST00000473652.1:n.256G>A
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000490875
  gene symbol: TFAP2A
  hgvsc: ENST00000490875.1:n.301G>A
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000497266
  gene symbol: TFAP2A
  hgvsc: ENST00000497266.1:n.173G>A
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000420568
  ensembl transcript: ENST00000489805
  gene symbol: TFAP2A
  hgvsc: ENST00000489805.1:c.41G>A
  hgvsp: ENSP00000420568.1:p.Gly14Asp
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000478375
  gene symbol: TFAP2A
  hgvsc: ENST00000478375.1:n.59G>A
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000368933
  ensembl transcript: ENST00000379613
  gene symbol: TFAP2A
  hgvsc: ENST00000379613.3:c.65G>A
  hgvsp: ENSP00000368933.3:p.Gly22Asp
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000418391
  ensembl transcript: ENST00000465858
  gene symbol: TFAP2A
  hgvsc: ENST00000465858.1:c.194G>A
  hgvsp: ENSP00000418391.1:p.Gly65Asp
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000462727
  gene symbol: TFAP2A
  hgvsc: ENST00000462727.1:n.97G>A
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000368924
  ensembl transcript: ENST00000379604
  gene symbol: TFAP2A
  hgvsc: ENST00000379604.2:c.59G>A
  hgvsp: ENSP00000368924.2:p.Gly20Asp
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000464323
  gene symbol: TFAP2A
  hgvsc: ENST00000464323.1:n.151G>A
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000418541
  ensembl transcript: ENST00000482890
  gene symbol: TFAP2A
  hgvsc: ENST00000482890.1:c.59G>A
  hgvsp: ENSP00000418541.1:p.Gly20Asp
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000419823
  ensembl transcript: ENST00000488193
  gene symbol: TFAP2A
  hgvsc: ENST00000488193.1:c.65G>A
  hgvsp: ENSP00000419823.1:p.Gly22Asp
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000316516
  ensembl transcript: ENST00000319516
  gene symbol: TFAP2A
  hgvsc: ENST00000319516.4:c.47G>A
  hgvsp: ENSP00000316516.4:p.Gly16Asp
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000368928
  ensembl transcript: ENST00000379608
  gene symbol: TFAP2A
  hgvsc: ENST00000379608.3:c.41G>A
  hgvsp: ENSP00000368928.3:p.Gly14Asp
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000229950
  ensembl transcript: ENST00000420777
  gene symbol: TFAP2A-AS1
  hgvsc: ENST00000420777.1:n.58+925C>T
  variant of: http://identifiers.org/hgnc/40579
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000417495
  ensembl transcript: ENST00000466073
  gene symbol: TFAP2A
  hgvsc: ENST00000466073.1:c.59G>A
  hgvsp: ENSP00000417495.1:p.Gly20Asp
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000419961
  ensembl transcript: ENST00000498450
  gene symbol: TFAP2A
  hgvsc: ENST00000498450.1:c.52-3478G>A
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000474952
  gene symbol: TFAP2A
  hgvsc: ENST00000474952.1:n.491G>A
  variant of: http://identifiers.org/hgnc/11742
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 679
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly20Asp
num of homozygotes: 0
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
population: Other
reference allele: C
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: DP

6-10410574-AGAGAGC-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10410574
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 10410568
    reference: chr 6
allele count: 1
allele frequency: 1.283137013370288e-5
allele num: 77934
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000497266
  gene symbol: TFAP2A
  hgvsc: ENST00000497266.1:n.160-12_160-7delGCTCTC
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000417495
  ensembl transcript: ENST00000466073
  gene symbol: TFAP2A
  hgvsc: ENST00000466073.1:c.46-12_46-7delGCTCTC
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000462727
  gene symbol: TFAP2A
  hgvsc: ENST00000462727.1:n.84-12_84-7delGCTCTC
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000464323
  gene symbol: TFAP2A
  hgvsc: ENST00000464323.1:n.138-12_138-7delGCTCTC
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000418391
  ensembl transcript: ENST00000465858
  gene symbol: TFAP2A
  hgvsc: ENST00000465858.1:c.181-12_181-7delGCTCTC
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000490875
  gene symbol: TFAP2A
  hgvsc: ENST00000490875.1:n.288-12_288-7delGCTCTC
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000229950
  ensembl transcript: ENST00000420777
  gene symbol: TFAP2A-AS1
  hgvsc: ENST00000420777.1:n.58+950_58+955delCGAGAG
  variant of: http://identifiers.org/hgnc/40579
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000368924
  ensembl transcript: ENST00000379604
  gene symbol: TFAP2A
  hgvsc: ENST00000379604.2:c.46-12_46-7delGCTCTC
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000478375
  gene symbol: TFAP2A
  hgvsc: ENST00000478375.1:n.46-12_46-7delGCTCTC
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000420568
  ensembl transcript: ENST00000489805
  gene symbol: TFAP2A
  hgvsc: ENST00000489805.1:c.28-12_28-7delGCTCTC
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000419823
  ensembl transcript: ENST00000488193
  gene symbol: TFAP2A
  hgvsc: ENST00000488193.1:c.52-12_52-7delGCTCTC
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000474952
  gene symbol: TFAP2A
  hgvsc: ENST00000474952.1:n.478-12_478-7delGCTCTC
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000316516
  ensembl transcript: ENST00000319516
  gene symbol: TFAP2A
  hgvsc: ENST00000319516.4:c.34-12_34-7delGCTCTC
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000473652
  gene symbol: TFAP2A
  hgvsc: ENST00000473652.1:n.243-12_243-7delGCTCTC
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000419961
  ensembl transcript: ENST00000498450
  gene symbol: TFAP2A
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000368933
  ensembl transcript: ENST00000379613
  gene symbol: TFAP2A
  hgvsc: ENST00000379613.3:c.52-12_52-7delGCTCTC
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000368928
  ensembl transcript: ENST00000379608
  gene symbol: TFAP2A
  hgvsc: ENST00000379608.3:c.28-12_28-7delGCTCTC
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000418541
  ensembl transcript: ENST00000482890
  gene symbol: TFAP2A
  hgvsc: ENST00000482890.1:c.46-12_46-7delGCTCTC
  variant of: http://identifiers.org/hgnc/11742
canonical: true
consequence: splice region
filter: VQSRTrancheINDEL96.00to97.00
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.46-12_46-7delGCTCTC
num of homozygotes: 0
population: Other
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
reference allele: AGAGAGC
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum

6-10410591-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10410591
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 10410591
    reference: chr 6
allele count: 4
allele frequency: 6.401229035974907e-5
allele num: 62488
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000368928
  ensembl transcript: ENST00000379608
  gene symbol: TFAP2A
  hgvsc: ENST00000379608.3:c.28-23C>T
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000419961
  ensembl transcript: ENST00000498450
  gene symbol: TFAP2A
  hgvsc: ENST00000498450.1:c.52-3514C>T
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000418391
  ensembl transcript: ENST00000465858
  gene symbol: TFAP2A
  hgvsc: ENST00000465858.1:c.181-23C>T
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000474952
  gene symbol: TFAP2A
  hgvsc: ENST00000474952.1:n.478-23C>T
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000368924
  ensembl transcript: ENST00000379604
  gene symbol: TFAP2A
  hgvsc: ENST00000379604.2:c.46-23C>T
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000420568
  ensembl transcript: ENST00000489805
  gene symbol: TFAP2A
  hgvsc: ENST00000489805.1:c.28-23C>T
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000490875
  gene symbol: TFAP2A
  hgvsc: ENST00000490875.1:n.288-23C>T
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000464323
  gene symbol: TFAP2A
  hgvsc: ENST00000464323.1:n.138-23C>T
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000497266
  gene symbol: TFAP2A
  hgvsc: ENST00000497266.1:n.160-23C>T
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000229950
  ensembl transcript: ENST00000420777
  gene symbol: TFAP2A-AS1
  hgvsc: ENST00000420777.1:n.58+961G>A
  variant of: http://identifiers.org/hgnc/40579
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000473652
  gene symbol: TFAP2A
  hgvsc: ENST00000473652.1:n.243-23C>T
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000316516
  ensembl transcript: ENST00000319516
  gene symbol: TFAP2A
  hgvsc: ENST00000319516.4:c.34-23C>T
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000462727
  gene symbol: TFAP2A
  hgvsc: ENST00000462727.1:n.84-23C>T
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000368933
  ensembl transcript: ENST00000379613
  gene symbol: TFAP2A
  hgvsc: ENST00000379613.3:c.52-23C>T
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000419823
  ensembl transcript: ENST00000488193
  gene symbol: TFAP2A
  hgvsc: ENST00000488193.1:c.52-23C>T
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000478375
  gene symbol: TFAP2A
  hgvsc: ENST00000478375.1:n.46-23C>T
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000417495
  ensembl transcript: ENST00000466073
  gene symbol: TFAP2A
  hgvsc: ENST00000466073.1:c.46-23C>T
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000418541
  ensembl transcript: ENST00000482890
  gene symbol: TFAP2A
  hgvsc: ENST00000482890.1:c.46-23C>T
  variant of: http://identifiers.org/hgnc/11742
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1550
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8922
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 1
population: European (Finnish)
population: Latino
population: Other
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
reference allele: G
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/6-10410599-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10410599
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 10410599
    reference: chr 6
allele count: 0
allele frequency: 0.0e0
allele num: 53976
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000420568
  ensembl transcript: ENST00000489805
  gene symbol: TFAP2A
  hgvsc: ENST00000489805.1:c.28-31G>T
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000473652
  gene symbol: TFAP2A
  hgvsc: ENST00000473652.1:n.243-31G>T
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000368933
  ensembl transcript: ENST00000379613
  gene symbol: TFAP2A
  hgvsc: ENST00000379613.3:c.52-31G>T
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000418391
  ensembl transcript: ENST00000465858
  gene symbol: TFAP2A
  hgvsc: ENST00000465858.1:c.181-31G>T
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000419961
  ensembl transcript: ENST00000498450
  gene symbol: TFAP2A
  hgvsc: ENST00000498450.1:c.52-3522G>T
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000417495
  ensembl transcript: ENST00000466073
  gene symbol: TFAP2A
  hgvsc: ENST00000466073.1:c.46-31G>T
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000490875
  gene symbol: TFAP2A
  hgvsc: ENST00000490875.1:n.288-31G>T
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000464323
  gene symbol: TFAP2A
  hgvsc: ENST00000464323.1:n.138-31G>T
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000497266
  gene symbol: TFAP2A
  hgvsc: ENST00000497266.1:n.160-31G>T
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000462727
  gene symbol: TFAP2A
  hgvsc: ENST00000462727.1:n.84-31G>T
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000478375
  gene symbol: TFAP2A
  hgvsc: ENST00000478375.1:n.46-31G>T
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000418541
  ensembl transcript: ENST00000482890
  gene symbol: TFAP2A
  hgvsc: ENST00000482890.1:c.46-31G>T
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000316516
  ensembl transcript: ENST00000319516
  gene symbol: TFAP2A
  hgvsc: ENST00000319516.4:c.34-31G>T
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000419823
  ensembl transcript: ENST00000488193
  gene symbol: TFAP2A
  hgvsc: ENST00000488193.1:c.52-31G>T
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000474952
  gene symbol: TFAP2A
  hgvsc: ENST00000474952.1:n.478-31G>T
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000229950
  ensembl transcript: ENST00000420777
  gene symbol: TFAP2A-AS1
  hgvsc: ENST00000420777.1:n.58+969C>A
  variant of: http://identifiers.org/hgnc/40579
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000368928
  ensembl transcript: ENST00000379608
  gene symbol: TFAP2A
  hgvsc: ENST00000379608.3:c.28-31G>T
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000368924
  ensembl transcript: ENST00000379604
  gene symbol: TFAP2A
  hgvsc: ENST00000379604.2:c.46-31G>T
  variant of: http://identifiers.org/hgnc/11742
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1447
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17814
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum

6-10410604-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10410604
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 10410604
    reference: chr 6
allele count: 2
allele frequency: 4.203976962206247e-5
allele num: 47574
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000368924
  ensembl transcript: ENST00000379604
  gene symbol: TFAP2A
  hgvsc: ENST00000379604.2:c.46-36T>C
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000368928
  ensembl transcript: ENST00000379608
  gene symbol: TFAP2A
  hgvsc: ENST00000379608.3:c.28-36T>C
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000490875
  gene symbol: TFAP2A
  hgvsc: ENST00000490875.1:n.288-36T>C
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000478375
  gene symbol: TFAP2A
  hgvsc: ENST00000478375.1:n.46-36T>C
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000462727
  gene symbol: TFAP2A
  hgvsc: ENST00000462727.1:n.84-36T>C
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000464323
  gene symbol: TFAP2A
  hgvsc: ENST00000464323.1:n.138-36T>C
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000497266
  gene symbol: TFAP2A
  hgvsc: ENST00000497266.1:n.160-36T>C
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000417495
  ensembl transcript: ENST00000466073
  gene symbol: TFAP2A
  hgvsc: ENST00000466073.1:c.46-36T>C
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000418541
  ensembl transcript: ENST00000482890
  gene symbol: TFAP2A
  hgvsc: ENST00000482890.1:c.46-36T>C
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000419961
  ensembl transcript: ENST00000498450
  gene symbol: TFAP2A
  hgvsc: ENST00000498450.1:c.52-3527T>C
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000418391
  ensembl transcript: ENST00000465858
  gene symbol: TFAP2A
  hgvsc: ENST00000465858.1:c.181-36T>C
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000368933
  ensembl transcript: ENST00000379613
  gene symbol: TFAP2A
  hgvsc: ENST00000379613.3:c.52-36T>C
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000474952
  gene symbol: TFAP2A
  hgvsc: ENST00000474952.1:n.478-36T>C
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000420568
  ensembl transcript: ENST00000489805
  gene symbol: TFAP2A
  hgvsc: ENST00000489805.1:c.28-36T>C
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000316516
  ensembl transcript: ENST00000319516
  gene symbol: TFAP2A
  hgvsc: ENST00000319516.4:c.34-36T>C
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000419823
  ensembl transcript: ENST00000488193
  gene symbol: TFAP2A
  hgvsc: ENST00000488193.1:c.52-36T>C
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000473652
  gene symbol: TFAP2A
  hgvsc: ENST00000473652.1:n.243-36T>C
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000229950
  ensembl transcript: ENST00000420777
  gene symbol: TFAP2A-AS1
  hgvsc: ENST00000420777.1:n.58+974A>G
  variant of: http://identifiers.org/hgnc/40579
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2438
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14982
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
population: East Asian
population: African
population: South Asian
reference allele: A
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQ

http://identifiers.org/exac.variant/6-10410608-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10410608
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 10410608
    reference: chr 6
allele count: 1
allele frequency: 2.419901268028265e-5
allele num: 41324
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000419961
  ensembl transcript: ENST00000498450
  gene symbol: TFAP2A
  hgvsc: ENST00000498450.1:c.52-3531T>G
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000229950
  ensembl transcript: ENST00000420777
  gene symbol: TFAP2A-AS1
  hgvsc: ENST00000420777.1:n.58+978A>C
  variant of: http://identifiers.org/hgnc/40579
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000419823
  ensembl transcript: ENST00000488193
  gene symbol: TFAP2A
  hgvsc: ENST00000488193.1:c.52-40T>G
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000464323
  gene symbol: TFAP2A
  hgvsc: ENST00000464323.1:n.138-40T>G
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000368924
  ensembl transcript: ENST00000379604
  gene symbol: TFAP2A
  hgvsc: ENST00000379604.2:c.46-40T>G
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000462727
  gene symbol: TFAP2A
  hgvsc: ENST00000462727.1:n.84-40T>G
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000490875
  gene symbol: TFAP2A
  hgvsc: ENST00000490875.1:n.288-40T>G
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000473652
  gene symbol: TFAP2A
  hgvsc: ENST00000473652.1:n.243-40T>G
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000368933
  ensembl transcript: ENST00000379613
  gene symbol: TFAP2A
  hgvsc: ENST00000379613.3:c.52-40T>G
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000478375
  gene symbol: TFAP2A
  hgvsc: ENST00000478375.1:n.46-40T>G
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000418391
  ensembl transcript: ENST00000465858
  gene symbol: TFAP2A
  hgvsc: ENST00000465858.1:c.181-40T>G
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000368928
  ensembl transcript: ENST00000379608
  gene symbol: TFAP2A
  hgvsc: ENST00000379608.3:c.28-40T>G
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000497266
  gene symbol: TFAP2A
  hgvsc: ENST00000497266.1:n.160-40T>G
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000418541
  ensembl transcript: ENST00000482890
  gene symbol: TFAP2A
  hgvsc: ENST00000482890.1:c.46-40T>G
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000316516
  ensembl transcript: ENST00000319516
  gene symbol: TFAP2A
  hgvsc: ENST00000319516.4:c.34-40T>G
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000417495
  ensembl transcript: ENST00000466073
  gene symbol: TFAP2A
  hgvsc: ENST00000466073.1:c.46-40T>G
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000420568
  ensembl transcript: ENST00000489805
  gene symbol: TFAP2A
  hgvsc: ENST00000489805.1:c.28-40T>G
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000474952
  gene symbol: TFAP2A
  hgvsc: ENST00000474952.1:n.478-40T>G
  variant of: http://identifiers.org/hgnc/11742
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 23338
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2308
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12355
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
population: Other
population: East Asian
population: European (Finnish)
reference allele: A
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: DP

6-10410612-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10410612
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 10410612
    reference: chr 6
allele count: 0
allele frequency: 0.0e0
allele num: 37374
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000490875
  gene symbol: TFAP2A
  hgvsc: ENST00000490875.1:n.288-44C>T
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000473652
  gene symbol: TFAP2A
  hgvsc: ENST00000473652.1:n.243-44C>T
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000419961
  ensembl transcript: ENST00000498450
  gene symbol: TFAP2A
  hgvsc: ENST00000498450.1:c.52-3535C>T
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000229950
  ensembl transcript: ENST00000420777
  gene symbol: TFAP2A-AS1
  hgvsc: ENST00000420777.1:n.58+982G>A
  variant of: http://identifiers.org/hgnc/40579
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000368928
  ensembl transcript: ENST00000379608
  gene symbol: TFAP2A
  hgvsc: ENST00000379608.3:c.28-44C>T
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000316516
  ensembl transcript: ENST00000319516
  gene symbol: TFAP2A
  hgvsc: ENST00000319516.4:c.34-44C>T
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000419823
  ensembl transcript: ENST00000488193
  gene symbol: TFAP2A
  hgvsc: ENST00000488193.1:c.52-44C>T
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000462727
  gene symbol: TFAP2A
  hgvsc: ENST00000462727.1:n.84-44C>T
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000418391
  ensembl transcript: ENST00000465858
  gene symbol: TFAP2A
  hgvsc: ENST00000465858.1:c.181-44C>T
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000478375
  gene symbol: TFAP2A
  hgvsc: ENST00000478375.1:n.46-44C>T
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000418541
  ensembl transcript: ENST00000482890
  gene symbol: TFAP2A
  hgvsc: ENST00000482890.1:c.46-44C>T
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000497266
  gene symbol: TFAP2A
  hgvsc: ENST00000497266.1:n.160-44C>T
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000368933
  ensembl transcript: ENST00000379613
  gene symbol: TFAP2A
  hgvsc: ENST00000379613.3:c.52-44C>T
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000474952
  gene symbol: TFAP2A
  hgvsc: ENST00000474952.1:n.478-44C>T
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000417495
  ensembl transcript: ENST00000466073
  gene symbol: TFAP2A
  hgvsc: ENST00000466073.1:c.46-44C>T
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000420568
  ensembl transcript: ENST00000489805
  gene symbol: TFAP2A
  hgvsc: ENST00000489805.1:c.28-44C>T
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl protein: ENSP00000368924
  ensembl transcript: ENST00000379604
  gene symbol: TFAP2A
  hgvsc: ENST00000379604.2:c.46-44C>T
  variant of: http://identifiers.org/hgnc/11742
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137203
  ensembl transcript: ENST00000464323
  gene symbol: TFAP2A
  hgvsc: ENST00000464323.1:n.138-44C>T
  variant of: http://identifiers.org/hgnc/11742
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1406
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10434
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
reference allele: G

GenotypeDepth
all individuals: 5075
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 483
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 39332
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1415
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 84
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 15
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 464
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 753
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 274
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 11718
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 972
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 11
bin: 5.75e1
variant carriers: 1

GenotypeDepth
all individuals: 0
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 120
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 81
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1826
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 230
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 469
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2112
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 124
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 500
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 297
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43772
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6532
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 106
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 98
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 390
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 121
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 100
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1272
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2158
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 242
bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11372
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8440
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 862
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6064
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.042100875364735e-4
allele num: 9596
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16426
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64588
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -8.253e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.54e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

MQ
type: SiteQuality
SIO_000300: 5.861e1

QD
type: SiteQuality
SIO_000300: 1.616e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.13e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.18e-1

DP
type: SiteQuality
SIO_000300: 1.403629e6

ClippingRankSum
type: SiteQuality
SIO_000300: 3.42e-1

FS
type: SiteQuality
SIO_000300: 4.037e0

GenotypeDepth
all individuals: 5149
bin: 3.25e1
variant carriers: 1

GenotypeDepth
all individuals: 91
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 39221
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 530
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 290
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 492
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 4
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 20
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 784
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 884
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 14
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1347
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 8.25e1
variant carriers: 1

GenotypeDepth
all individuals: 0
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 11771
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 9.75e1
variant carriers: 2

GenotypeDepth
all individuals: 0
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 397
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1640
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 155
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1282
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 252
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 56
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 476
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 130
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 286
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 622
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 128
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 126
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 114
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43679
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2182
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 215
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6563
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 94
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2126
bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16426
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 862
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11390
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6136
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9530
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.198859409868585e-5
allele num: 64528
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8442
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.321e1

VQSLOD
type: SiteQuality
SIO_000300: -1.298e0

MQRankSum
type: SiteQuality
SIO_000300: -1.67e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.7e-2

DP
type: SiteQuality
SIO_000300: 1.406933e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.48e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.23e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.827e1

GenotypeDepth
all individuals: 5148
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 86
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 11789
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 9.25e1
variant carriers: 1

GenotypeDepth
all individuals: 2
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 4
bin: 6.75e1
variant carriers: 1

GenotypeDepth
all individuals: 22
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 4
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 39229
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 533
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 873
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 289
bin: 4.25e1
variant carriers: 1

GenotypeDepth
all individuals: 791
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 481
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1338
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 14
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 4
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 2195
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 479
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1675
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43777
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 625
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 105
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 83
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 120
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 74
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2132
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6577
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 117
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 208
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 285
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1281
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 76
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 257
bin: 9.75e1
variant carriers: 6

GenotypeQuality
all individuals: 400
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 99
bin: 5.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.193868070610096e-5
allele num: 64580
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8444
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16426
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 862
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9548
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.75561797752809e-4
allele num: 11392
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6144
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.765e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.262e0

MQRankSum
type: SiteQuality
SIO_000300: 9.0e-2

DP
type: SiteQuality
SIO_000300: 1.407702e6

VQSLOD
type: SiteQuality
SIO_000300: -6.898e-1

QD
type: SiteQuality
SIO_000300: 1.381e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.79e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.69e-1

GenotypeDepth
all individuals: 871
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 89
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1326
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 39213
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5
bin: 6.25e1
variant carriers: 1

GenotypeDepth
all individuals: 797
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 15
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 11801
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 479
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 529
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 293
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 19
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 5164
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 4
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 628
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 400
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43827
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 113
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 81
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 113
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 76
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 101
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 90
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2131
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 255
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1278
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1666
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 207
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 281
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6581
bin: 6.75e1
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GenotypeQuality
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African
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South Asian
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Latino
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VQSLOD
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MQRankSum
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MQ
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DP
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BaseQRankSum
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ClippingRankSum
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FS
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ReadPosRankSum
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InbreedingCoeff
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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European (Non-Finnish)
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African
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Latino
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South Asian
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ClippingRankSum
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BaseQRankSum
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MQRankSum
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FS
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VQSLOD
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DP
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MQ
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QD
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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East Asian
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European (Non-Finnish)
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African
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European (Finnish)
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Other
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ClippingRankSum
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ReadPosRankSum
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FS
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DP
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BaseQRankSum
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InbreedingCoeff
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MQRankSum
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QD
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VQSLOD
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MQ
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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Other
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European (Finnish)
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East Asian
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African
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South Asian
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FS
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VQSLOD
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MQRankSum
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ClippingRankSum
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QD
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InbreedingCoeff
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MQ
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ReadPosRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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Other
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European (Finnish)
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South Asian
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MQ
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DP
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BaseQRankSum
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InbreedingCoeff
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QD
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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East Asian
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European (Non-Finnish)
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African
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European (Finnish)
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Latino
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ReadPosRankSum
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ClippingRankSum
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VQSLOD
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InbreedingCoeff
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FS
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DP
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BaseQRankSum
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QD
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MQRankSum
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MQ
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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African
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Latino
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European (Finnish)
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European (Non-Finnish)
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MQ
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InbreedingCoeff
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FS
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DP
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ReadPosRankSum
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QD
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BaseQRankSum
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VQSLOD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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European (Finnish)
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Other
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European (Non-Finnish)
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Latino
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East Asian
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BaseQRankSum
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DP
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VQSLOD
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InbreedingCoeff
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ReadPosRankSum
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MQRankSum
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QD
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FS
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MQ
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ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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European (Finnish)
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European (Non-Finnish)
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African
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South Asian
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Latino
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BaseQRankSum
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MQ
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MQRankSum
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ClippingRankSum
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ReadPosRankSum
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FS
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VQSLOD
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DP
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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European (Finnish)
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Latino
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South Asian
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African
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ReadPosRankSum
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DP
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MQ
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InbreedingCoeff
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VQSLOD
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African
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European (Non-Finnish)
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European (Finnish)
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East Asian
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South Asian
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DP
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ClippingRankSum
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VQSLOD
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FS
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QD
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MQ
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InbreedingCoeff
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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African
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European (Non-Finnish)
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Other
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Latino
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East Asian
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MQ
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ReadPosRankSum
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ClippingRankSum
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MQRankSum
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BaseQRankSum
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VQSLOD
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QD
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FS
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InbreedingCoeff
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DP
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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European (Finnish)
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European (Non-Finnish)
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allele frequency: 0.0e0
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Latino
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East Asian
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Other
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South Asian
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ClippingRankSum
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BaseQRankSum
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VQSLOD
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MQRankSum
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QD
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DP
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MQ
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FS
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InbreedingCoeff
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ReadPosRankSum
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele count: 1
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allele num: 65408
num of homozygotes: 0

South Asian
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East Asian
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Other
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African
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
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num of homozygotes: 0

Latino
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FS
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MQRankSum
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DP
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InbreedingCoeff
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VQSLOD
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ReadPosRankSum
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BaseQRankSum
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ClippingRankSum
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QD
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MQ
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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East Asian
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Latino
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num of homozygotes: 0

European (Finnish)
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Other
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South Asian
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European (Non-Finnish)
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VQSLOD
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MQ
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ClippingRankSum
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InbreedingCoeff
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QD
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BaseQRankSum
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MQRankSum
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FS
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ReadPosRankSum
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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num of homozygotes: 0

South Asian
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Latino
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African
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Other
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European (Non-Finnish)
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European (Finnish)
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ReadPosRankSum
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MQRankSum
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FS
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QD
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ClippingRankSum
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InbreedingCoeff
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MQ
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VQSLOD
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 858
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8460
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5804
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9222
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62646
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.758101243650377e-5
allele num: 11418
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16156
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.363e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.93e-1

QD
type: SiteQuality
SIO_000300: 1.605e1

VQSLOD
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SIO_000300: -1.568e0

DP
type: SiteQuality
SIO_000300: 1.554563e6

MQ
type: SiteQuality
SIO_000300: 5.882e1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.110000000000001e-1

FS
type: SiteQuality
SIO_000300: 1.2035e1

MQRankSum
type: SiteQuality
SIO_000300: 2.1e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.6e-3

GenotypeDepth
all individuals: 1769
bin: 1.75e1
variant carriers: 5

GenotypeDepth
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variant carriers: 1

GenotypeDepth
all individuals: 212
bin: 8.75e1
variant carriers: 0

GenotypeDepth
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bin: 7.5e0
variant carriers: 1

GenotypeDepth
all individuals: 670
bin: 4.25e1
variant carriers: 2

GenotypeDepth
all individuals: 32553
bin: 2.25e1
variant carriers: 4

GenotypeDepth
all individuals: 398
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variant carriers: 1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 1

GenotypeDepth
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GenotypeDepth
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variant carriers: 3

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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variant carriers: 0

GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 2

GenotypeQuality
all individuals: 544
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variant carriers: 2

GenotypeQuality
all individuals: 1872
bin: 7.75e1
variant carriers: 1

African
type: Population
allele count: 1
allele frequency: 1.142074006395614e-4
allele num: 8756
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11250
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 5.097013150293928e-5
allele num: 58858
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.277463904582549e-5
allele num: 15930
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.225490196078431e-3
allele num: 816
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 7
allele frequency: 1.359223300970874e-3
allele num: 5150
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.403268445085316e-4
allele num: 8322
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.576e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.75e-2

FS
type: SiteQuality
SIO_000300: 2.06487e2

MQRankSum
type: SiteQuality
SIO_000300: 7.5e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.949e2

MQ
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SIO_000300: 5.813e1

DP
type: SiteQuality
SIO_000300: 1.750135e6

ClippingRankSum
type: SiteQuality
SIO_000300: 7.2e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.9e-1

QD
type: SiteQuality
SIO_000300: 9.399999999999999e-1

GenotypeDepth
all individuals: 2179
bin: 1.75e1
variant carriers: 14

GenotypeDepth
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variant carriers: 17

GenotypeDepth
all individuals: 3808
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variant carriers: 12

GenotypeDepth
all individuals: 17890
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variant carriers: 12

GenotypeDepth
all individuals: 2087
bin: 1.25e1
variant carriers: 3

GenotypeDepth
all individuals: 703
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variant carriers: 0

GenotypeDepth
all individuals: 1843
bin: 4.25e1
variant carriers: 14

GenotypeDepth
all individuals: 1323
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variant carriers: 5

GenotypeDepth
all individuals: 2010
bin: 4.75e1
variant carriers: 16

GenotypeDepth
all individuals: 1902
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variant carriers: 16

GenotypeDepth
all individuals: 1753
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variant carriers: 14

GenotypeDepth
all individuals: 5800
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variant carriers: 10

GenotypeDepth
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variant carriers: 20

GenotypeDepth
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variant carriers: 14

GenotypeDepth
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variant carriers: 4

GenotypeDepth
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variant carriers: 3

GenotypeDepth
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variant carriers: 5

GenotypeQuality
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variant carriers: 13

GenotypeQuality
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variant carriers: 6

GenotypeQuality
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bin: 3.25e1
variant carriers: 13

GenotypeQuality
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variant carriers: 7

GenotypeQuality
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variant carriers: 5

GenotypeQuality
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variant carriers: 27

GenotypeQuality
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variant carriers: 4

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 2

GenotypeQuality
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variant carriers: 14

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 3

GenotypeQuality
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variant carriers: 6

GenotypeQuality
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variant carriers: 22

GenotypeQuality
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variant carriers: 20

GenotypeQuality
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variant carriers: 4

GenotypeQuality
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variant carriers: 36

GenotypeQuality
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variant carriers: 4

GenotypeQuality
all individuals: 814
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variant carriers: 3

GenotypeQuality
all individuals: 515
bin: 8.25e1
variant carriers: 3

Latino
type: Population
allele count: 2
allele frequency: 2.134471718249733e-4
allele num: 9370
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 3.021148036253776e-4
allele num: 6620
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 46
allele frequency: 1.163614287159769e-3
allele num: 39532
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 2.195871761089152e-4
allele num: 13662
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.618122977346278e-3
allele num: 618
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 26
allele frequency: 7.323943661971831e-3
allele num: 3550
num of homozygotes: 0

East Asian
type: Population
allele count: 9
allele frequency: 1.42495250158328e-3
allele num: 6316
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.07e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.671e0

MQRankSum
type: SiteQuality
SIO_000300: 8.0e-2

QD
type: SiteQuality
SIO_000300: 3.0e-1

MQ
type: SiteQuality
SIO_000300: 5.804e1

DP
type: SiteQuality
SIO_000300: 2.661515e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.26e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.22e-1

VQSLOD
type: SiteQuality
SIO_000300: -7.51e0

FS
type: SiteQuality
SIO_000300: 3.8108e1

GenotypeDepth
all individuals: 2192
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1212
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variant carriers: 0

GenotypeDepth
all individuals: 810
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GenotypeDepth
all individuals: 2222
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
all individuals: 17256
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
all individuals: 1110
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
all individuals: 2797
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 1

GenotypeDepth
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GenotypeQuality
all individuals: 145
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 360
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 2354
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 1493
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 866
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.790436005625879e-5
allele num: 11376
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63204
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6522
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16088
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9062
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8418
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.118e0

DP
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SIO_000300: 2.350175e6

ClippingRankSum
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SIO_000300: 2.62e0

InbreedingCoeff
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SIO_000300: 2.1e-3

QD
type: SiteQuality
SIO_000300: 3.0e-2

BaseQRankSum
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SIO_000300: -5.54e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.802e0

MQRankSum
type: SiteQuality
SIO_000300: -6.76e-1

MQ
type: SiteQuality
SIO_000300: 5.768e1

FS
type: SiteQuality
SIO_000300: 3.1811e1

GenotypeDepth
all individuals: 1969
bin: 5.75e1
variant carriers: 45

GenotypeDepth
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bin: 4.75e1
variant carriers: 57

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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bin: 5.25e1
variant carriers: 51

GenotypeDepth
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variant carriers: 9

GenotypeDepth
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variant carriers: 45

GenotypeDepth
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GenotypeDepth
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variant carriers: 1

GenotypeDepth
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variant carriers: 42

GenotypeDepth
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variant carriers: 28

GenotypeDepth
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variant carriers: 24

GenotypeDepth
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variant carriers: 17

GenotypeQuality
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bin: 9.75e1
variant carriers: 29

GenotypeQuality
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variant carriers: 41

GenotypeQuality
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bin: 4.25e1
variant carriers: 25

GenotypeQuality
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bin: 6.75e1
variant carriers: 16

GenotypeQuality
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bin: 7.5e0
variant carriers: 40

GenotypeQuality
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bin: 8.75e1
variant carriers: 7

GenotypeQuality
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bin: 2.75e1
variant carriers: 34

GenotypeQuality
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variant carriers: 36

GenotypeQuality
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variant carriers: 32

GenotypeQuality
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bin: 3.25e1
variant carriers: 31

GenotypeQuality
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variant carriers: 44

GenotypeQuality
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variant carriers: 16

GenotypeQuality
all individuals: 2354
bin: 8.25e1
variant carriers: 7

GenotypeQuality
all individuals: 145
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variant carriers: 17

GenotypeQuality
all individuals: 692
bin: 3.75e1
variant carriers: 22

GenotypeQuality
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bin: 7.25e1
variant carriers: 11

GenotypeQuality
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bin: 7.75e1
variant carriers: 7

GenotypeQuality
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variant carriers: 4

GenotypeQuality
all individuals: 24430
bin: 6.25e1
variant carriers: 15

GenotypeQuality
all individuals: 351
bin: 4.75e1
variant carriers: 21

European (Non-Finnish)
type: Population
allele count: 141
allele frequency: 2.230871463831403e-3
allele num: 63204
num of homozygotes: 0

Latino
type: Population
allele count: 42
allele frequency: 3.691983122362869e-3
allele num: 11376
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 12
allele frequency: 1.839926402943882e-3
allele num: 6522
num of homozygotes: 0

East Asian
type: Population
allele count: 41
allele frequency: 4.870515561891185e-3
allele num: 8418
num of homozygotes: 0

African
type: Population
allele count: 31
allele frequency: 3.420878393290664e-3
allele num: 9062
num of homozygotes: 0

Other
type: Population
allele count: 2
allele frequency: 2.309468822170901e-3
allele num: 866
num of homozygotes: 0

South Asian
type: Population
allele count: 25
allele frequency: 1.553953257086027e-3
allele num: 16088
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.768e1

DP
type: SiteQuality
SIO_000300: 2.350175e6

BaseQRankSum
type: SiteQuality
SIO_000300: -5.54e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.1e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.118e0

VQSLOD
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SIO_000300: -3.802e0

FS
type: SiteQuality
SIO_000300: 3.1811e1

ClippingRankSum
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SIO_000300: 2.62e0

QD
type: SiteQuality
SIO_000300: 3.0e-2

MQRankSum
type: SiteQuality
SIO_000300: -6.76e-1

GenotypeDepth
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variant carriers: 12

GenotypeDepth
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variant carriers: 7

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1089
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GenotypeQuality
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variant carriers: 10

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 9241
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GenotypeQuality
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GenotypeQuality
all individuals: 204
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variant carriers: 9

GenotypeQuality
all individuals: 6154
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variant carriers: 1

GenotypeQuality
all individuals: 314
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variant carriers: 7

GenotypeQuality
all individuals: 2959
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variant carriers: 0

GenotypeQuality
all individuals: 2296
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variant carriers: 1

GenotypeQuality
all individuals: 872
bin: 3.25e1
variant carriers: 5

South Asian
type: Population
allele count: 2
allele frequency: 1.258019876714052e-4
allele num: 15898
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 4
allele frequency: 6.277463904582549e-4
allele num: 6372
num of homozygotes: 0

Latino
type: Population
allele count: 12
allele frequency: 1.089522426003269e-3
allele num: 11014
num of homozygotes: 0

Other
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European (Non-Finnish)
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BaseQRankSum
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FS
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MQRankSum
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VQSLOD
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MQ
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QD
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InbreedingCoeff
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ReadPosRankSum
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DP
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GenotypeQuality
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East Asian
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European (Finnish)
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African
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Latino
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South Asian
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FS
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MQRankSum
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ReadPosRankSum
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VQSLOD
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InbreedingCoeff
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MQ
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QD
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DP
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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European (Finnish)
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African
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Latino
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Other
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European (Non-Finnish)
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South Asian
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InbreedingCoeff
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ClippingRankSum
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ReadPosRankSum
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VQSLOD
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QD
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MQRankSum
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FS
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MQ
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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African
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Latino
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European (Finnish)
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European (Non-Finnish)
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South Asian
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InbreedingCoeff
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DP
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QD
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VQSLOD
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MQ
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FS
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MQRankSum
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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South Asian
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European (Non-Finnish)
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European (Finnish)
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African
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MQ
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VQSLOD
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QD
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DP
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FS
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GenotypeQuality
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East Asian
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European (Non-Finnish)
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Latino
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South Asian
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FS
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ClippingRankSum
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DP
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VQSLOD
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MQ
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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Latino
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African
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European (Non-Finnish)
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East Asian
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ReadPosRankSum
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QD
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InbreedingCoeff
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MQRankSum
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BaseQRankSum
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FS
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VQSLOD
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ClippingRankSum
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MQ
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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European (Finnish)
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Latino
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Other
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East Asian
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European (Non-Finnish)
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MQRankSum
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InbreedingCoeff
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ReadPosRankSum
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DP
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MQ
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ClippingRankSum
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BaseQRankSum
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FS
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QD
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VQSLOD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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Latino
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South Asian
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African
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European (Non-Finnish)
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European (Finnish)
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DP
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QD
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ReadPosRankSum
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FS
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InbreedingCoeff
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BaseQRankSum
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MQRankSum
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VQSLOD
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MQ
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ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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Latino
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South Asian
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European (Non-Finnish)
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East Asian
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European (Finnish)
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InbreedingCoeff
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QD
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DP
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VQSLOD
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MQRankSum
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BaseQRankSum
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FS
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MQ
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ClippingRankSum
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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African
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European (Finnish)
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East Asian
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Latino
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South Asian
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DP
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MQRankSum
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MQ
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VQSLOD
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InbreedingCoeff
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FS
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QD
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ClippingRankSum
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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num of homozygotes: 0

East Asian
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European (Finnish)
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South Asian
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European (Non-Finnish)
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Latino
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Other
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DP
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FS
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QD
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MQ
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BaseQRankSum
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ClippingRankSum
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MQRankSum
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VQSLOD
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InbreedingCoeff
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele frequency: 4.819277108433735e-3
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African
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Other
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European (Non-Finnish)
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Latino
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South Asian
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East Asian
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MQRankSum
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ReadPosRankSum
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InbreedingCoeff
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FS
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VQSLOD
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MQ
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BaseQRankSum
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QD
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DP
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ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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African
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South Asian
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East Asian
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Latino
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allele count: 2
allele frequency: 2.583979328165375e-3
allele num: 774
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European (Non-Finnish)
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allele count: 3
allele frequency: 1.390820584144645e-4
allele num: 21570
num of homozygotes: 0

FS
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QD
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BaseQRankSum
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MQ
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MQRankSum
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DP
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ReadPosRankSum
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InbreedingCoeff
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VQSLOD
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ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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East Asian
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African
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Latino
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European (Finnish)
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South Asian
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Other
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ReadPosRankSum
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MQ
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DP
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FS
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QD
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InbreedingCoeff
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BaseQRankSum
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ClippingRankSum
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MQRankSum
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VQSLOD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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European (Finnish)
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South Asian
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African
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Latino
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East Asian
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European (Non-Finnish)
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ClippingRankSum
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VQSLOD
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FS
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MQ
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InbreedingCoeff
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MQRankSum
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QD
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DP
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1955
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variant carriers: 0

GenotypeQuality
all individuals: 174
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variant carriers: 0

East Asian
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allele count: 5
allele frequency: 8.350033400133601e-4
allele num: 5988
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.296074711805048e-5
allele num: 13706
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 3
allele frequency: 9.036144578313253e-4
allele num: 3320
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.571338780641106e-4
allele num: 6364
num of homozygotes: 0

Latino
type: Population
allele count: 6
allele frequency: 8.831321754489255e-4
allele num: 6794
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 16
allele frequency: 3.455872823880081e-4
allele num: 46298
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 618
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.41e-1

QD
type: SiteQuality
SIO_000300: 1.8e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.36e-1

FS
type: SiteQuality
SIO_000300: 2.122e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.69e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.057e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.94e0

MQ
type: SiteQuality
SIO_000300: 5.491e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.77e-2

DP
type: SiteQuality
SIO_000300: 1.49157e6

GenotypeDepth
all individuals: 8366
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variant carriers: 3

GenotypeDepth
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variant carriers: 2

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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variant carriers: 2

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1194
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variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.379992344009187e-5
allele num: 15674
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8480
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8056
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.014816318246397e-4
allele num: 9854
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 786
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 5.120502491977879e-5
allele num: 58588
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5142
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.511498e6

VQSLOD
type: SiteQuality
SIO_000300: -7.247e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.17e-2

BaseQRankSum
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SIO_000300: -1.659e0

FS
type: SiteQuality
SIO_000300: 3.502e1

MQRankSum
type: SiteQuality
SIO_000300: 4.15e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.64e-1

QD
type: SiteQuality
SIO_000300: 1.4e-1

MQ
type: SiteQuality
SIO_000300: 5.506e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.16e-1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
all individuals: 1200
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 3

GenotypeDepth
all individuals: 10
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GenotypeDepth
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GenotypeDepth
all individuals: 21
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
all individuals: 15715
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variant carriers: 1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
all individuals: 2
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GenotypeDepth
all individuals: 8
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variant carriers: 1

GenotypeQuality
all individuals: 380
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 10

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 196
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GenotypeQuality
all individuals: 7584
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16204
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 842
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62256
num of homozygotes: 0

African
type: Population
allele count: 9
allele frequency: 9.866257399693049e-4
allele num: 9122
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8442
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5968
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.843296781039972e-5
allele num: 11308
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -5.56e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.63e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.0e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.904e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.13e-1

MQ
type: SiteQuality
SIO_000300: 5.417e1

DP
type: SiteQuality
SIO_000300: 1.506488e6

FS
type: SiteQuality
SIO_000300: 6.983e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.2e-3

QD
type: SiteQuality
SIO_000300: 1.122e1

GenotypeDepth
all individuals: 2753
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 450
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variant carriers: 0

GenotypeDepth
all individuals: 41
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variant carriers: 1

GenotypeDepth
all individuals: 15587
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GenotypeDepth
all individuals: 10
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GenotypeDepth
all individuals: 27915
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GenotypeDepth
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GenotypeDepth
all individuals: 1251
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
all individuals: 143
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GenotypeDepth
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GenotypeDepth
all individuals: 1214
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GenotypeDepth
all individuals: 1
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GenotypeDepth
all individuals: 4
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GenotypeDepth
all individuals: 20
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GenotypeQuality
all individuals: 436
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GenotypeQuality
all individuals: 310
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 233
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GenotypeQuality
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variant carriers: 4

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 790
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GenotypeQuality
all individuals: 1971
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.820516116592216e-5
allele num: 62234
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.193317422434368e-3
allele num: 838
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9114
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11298
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8440
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5946
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16240
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.7e-2

VQSLOD
type: SiteQuality
SIO_000300: -9.979e-1

QD
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SIO_000300: 1.237e1

DP
type: SiteQuality
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BaseQRankSum
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SIO_000300: 1.84e0

InbreedingCoeff
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SIO_000300: -1.7e-3

MQ
type: SiteQuality
SIO_000300: 5.571e1

MQRankSum
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SIO_000300: 1.05e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
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SIO_000300: 1.83e0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 773
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GenotypeQuality
all individuals: 38753
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5956
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 840
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.608389358896001e-5
allele num: 62174
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11302
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9096
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.925e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.86e-1

FS
type: SiteQuality
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InbreedingCoeff
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MQRankSum
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QD
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DP
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VQSLOD
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BaseQRankSum
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 634
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GenotypeQuality
all individuals: 1536
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variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11242
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.614413483581415e-5
allele num: 61942
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 830
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9152
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5808
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
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QD
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FS
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BaseQRankSum
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MQRankSum
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ReadPosRankSum
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VQSLOD
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InbreedingCoeff
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MQ
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DP
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ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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European (Finnish)
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East Asian
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European (Non-Finnish)
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Other
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Latino
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VQSLOD
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QD
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FS
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MQRankSum
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MQ
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InbreedingCoeff
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BaseQRankSum
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ReadPosRankSum
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ClippingRankSum
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele num: 61288
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South Asian
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European (Finnish)
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African
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Latino
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Other
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East Asian
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BaseQRankSum
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QD
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VQSLOD
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ReadPosRankSum
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DP
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MQRankSum
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FS
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ClippingRankSum
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MQ
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InbreedingCoeff
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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East Asian
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Latino
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European (Finnish)
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African
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South Asian
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InbreedingCoeff
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ReadPosRankSum
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MQRankSum
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QD
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ClippingRankSum
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MQ
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VQSLOD
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DP
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FS
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BaseQRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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Latino
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East Asian
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European (Finnish)
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European (Non-Finnish)
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Other
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MQRankSum
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VQSLOD
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QD
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InbreedingCoeff
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ReadPosRankSum
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MQ
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ClippingRankSum
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FS
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DP
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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num of homozygotes: 0

European (Non-Finnish)
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African
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Latino
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East Asian
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South Asian
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ReadPosRankSum
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BaseQRankSum
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FS
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MQRankSum
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MQ
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ClippingRankSum
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DP
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InbreedingCoeff
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QD
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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African
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European (Non-Finnish)
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East Asian
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Latino
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Other
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QD
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VQSLOD
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BaseQRankSum
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DP
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ClippingRankSum
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ReadPosRankSum
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MQRankSum
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InbreedingCoeff
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MQ
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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Other
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African
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European (Finnish)
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South Asian
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European (Non-Finnish)
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InbreedingCoeff
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ReadPosRankSum
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BaseQRankSum
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ClippingRankSum
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QD
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DP
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MQRankSum
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MQ
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FS
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VQSLOD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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European (Finnish)
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Other
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East Asian
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African
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South Asian
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VQSLOD
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DP
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ReadPosRankSum
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MQRankSum
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QD
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MQ
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InbreedingCoeff
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FS
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ClippingRankSum
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BaseQRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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South Asian
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Other
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Latino
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African
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East Asian
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MQ
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ClippingRankSum
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QD
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DP
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MQRankSum
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FS
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VQSLOD
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ReadPosRankSum
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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African
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European (Non-Finnish)
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Latino
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East Asian
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South Asian
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FS
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InbreedingCoeff
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QD
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MQ
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VQSLOD
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DP
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African
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MQ
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DP
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European (Non-Finnish)
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East Asian
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MQRankSum
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FS
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VQSLOD
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MQ
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DP
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