7-99698960-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99698960
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99698960
    reference: chr 7
allele count: 5
allele frequency: 4.197095609837992e-5
allele num: 119130
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166508
  ensembl transcript: ENST00000463722
  gene symbol: MCM7
  hgvsc: ENST00000463722.1:n.73A>C
  variant of: http://identifiers.org/hgnc/6950
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166508
  ensembl protein: ENSP00000344006
  ensembl transcript: ENST00000343023
  gene symbol: MCM7
  hgvsc: ENST00000343023.6:c.-43A>C
  variant of: http://identifiers.org/hgnc/6950
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166508
  ensembl transcript: ENST00000489841
  gene symbol: MCM7
  hgvsc: ENST00000489841.1:n.34A>C
  variant of: http://identifiers.org/hgnc/6950
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166508
  ensembl protein: ENSP00000307288
  ensembl transcript: ENST00000303887
  gene symbol: MCM7
  hgvsc: ENST00000303887.5:c.-43A>C
  variant of: http://identifiers.org/hgnc/6950
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1623
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6193
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1107
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1090
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 738
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3335
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4414
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1328
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3331
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 851
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1934
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2652
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4243
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2411
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5316
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1621
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5600
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6289
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6370
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 551
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 225
  bin: 7.5e0
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genotype quality: GenotypeQuality
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  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 360
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2194
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1849
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 600
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1199
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1043
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1323
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3412
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2513
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 189
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 395
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: Other
population: South Asian
population: African
population: European (Non-Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ

7-99698961-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99698961
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99698961
    reference: chr 7
allele count: 4
allele frequency: 3.357563751741736e-5
allele num: 119134
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166508
  ensembl protein: ENSP00000307288
  ensembl transcript: ENST00000303887
  gene symbol: MCM7
  hgvsc: ENST00000303887.5:c.-44G>A
  variant of: http://identifiers.org/hgnc/6950
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166508
  ensembl protein: ENSP00000344006
  ensembl transcript: ENST00000343023
  gene symbol: MCM7
  hgvsc: ENST00000343023.6:c.-44G>A
  variant of: http://identifiers.org/hgnc/6950
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166508
  ensembl transcript: ENST00000489841
  gene symbol: MCM7
  hgvsc: ENST00000489841.1:n.33G>A
  variant of: http://identifiers.org/hgnc/6950
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166508
  ensembl transcript: ENST00000463722
  gene symbol: MCM7
  hgvsc: ENST00000463722.1:n.72G>A
  variant of: http://identifiers.org/hgnc/6950
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2608
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6370
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3323
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4238
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1323
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4416
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6194
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1107
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1996
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 855
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1088
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5600
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3334
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 4
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 570
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genotype quality: GenotypeQuality
  all individuals: 399
  bin: 2.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1213
  bin: 2.25e1
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genotype quality: GenotypeQuality
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  bin: 1.75e1
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genotype quality: GenotypeQuality
  all individuals: 1786
  bin: 6.75e1
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genotype quality: GenotypeQuality
  all individuals: 1847
  bin: 7.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2195
  bin: 8.25e1
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genotype quality: GenotypeQuality
  all individuals: 400
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 599
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
population: African
population: Other
population: East Asian
reference allele: C
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: QD

7-99698964-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99698964
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99698964
    reference: chr 7
allele count: 1
allele frequency: 8.39630562552477e-6
allele num: 119100
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166508
  ensembl protein: ENSP00000307288
  ensembl transcript: ENST00000303887
  gene symbol: MCM7
  hgvsc: ENST00000303887.5:c.-47C>T
  variant of: http://identifiers.org/hgnc/6950
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166508
  ensembl transcript: ENST00000489841
  gene symbol: MCM7
  hgvsc: ENST00000489841.1:n.30C>T
  variant of: http://identifiers.org/hgnc/6950
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166508
  ensembl transcript: ENST00000463722
  gene symbol: MCM7
  hgvsc: ENST00000463722.1:n.69C>T
  variant of: http://identifiers.org/hgnc/6950
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166508
  ensembl protein: ENSP00000344006
  ensembl transcript: ENST00000343023
  gene symbol: MCM7
  hgvsc: ENST00000343023.6:c.-47C>T
  variant of: http://identifiers.org/hgnc/6950
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1087
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1305
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 866
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3335
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2524
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6287
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1107
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6369
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3275
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2408
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 6.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 4.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 42396
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 219
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1151
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
population: South Asian
population: African
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: QD

7-99698964-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99698964
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99698964
    reference: chr 7
allele count: 1
allele frequency: 8.39630562552477e-6
allele num: 119100
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166508
  ensembl transcript: ENST00000463722
  gene symbol: MCM7
  hgvsc: ENST00000463722.1:n.69C>G
  variant of: http://identifiers.org/hgnc/6950
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166508
  ensembl protein: ENSP00000344006
  ensembl transcript: ENST00000343023
  gene symbol: MCM7
  hgvsc: ENST00000343023.6:c.-47C>G
  variant of: http://identifiers.org/hgnc/6950
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166508
  ensembl transcript: ENST00000489841
  gene symbol: MCM7
  hgvsc: ENST00000489841.1:n.30C>G
  variant of: http://identifiers.org/hgnc/6950
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166508
  ensembl protein: ENSP00000307288
  ensembl transcript: ENST00000303887
  gene symbol: MCM7
  hgvsc: ENST00000303887.5:c.-47C>G
  variant of: http://identifiers.org/hgnc/6950
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6287
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5596
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4238
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6369
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3275
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 738
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1087
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 866
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3335
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2524
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4415
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6195
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1305
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2408
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.25e1
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genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1107
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1622
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 401
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 8.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1151
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2944
  bin: 6.25e1
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genotype quality: GenotypeQuality
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  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 335
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 584
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42396
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1842
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: South Asian
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum

7-99698967-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99698967
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99698967
    reference: chr 7
allele count: 8
allele frequency: 6.719639827305257e-5
allele num: 119054
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166508
  ensembl protein: ENSP00000344006
  ensembl transcript: ENST00000343023
  gene symbol: MCM7
  hgvsc: ENST00000343023.6:c.-50G>A
  variant of: http://identifiers.org/hgnc/6950
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166508
  ensembl transcript: ENST00000489841
  gene symbol: MCM7
  hgvsc: ENST00000489841.1:n.27G>A
  variant of: http://identifiers.org/hgnc/6950
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166508
  ensembl protein: ENSP00000307288
  ensembl transcript: ENST00000303887
  gene symbol: MCM7
  hgvsc: ENST00000303887.5:c.-50G>A
  variant of: http://identifiers.org/hgnc/6950
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166508
  ensembl transcript: ENST00000463722
  gene symbol: MCM7
  hgvsc: ENST00000463722.1:n.66G>A
  variant of: http://identifiers.org/hgnc/6950
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2409
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 871
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4417
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6194
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1294
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1107
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2185
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3224
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 738
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1622
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1084
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6288
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6369
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4218
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5598
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2568
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5317
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1621
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3333
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1019
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 713
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1084
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 223
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 731
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 191
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 393
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1319
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1672
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 407
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 208
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1834
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 636
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2199
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2511
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
population: South Asian
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: QD

7-99699287-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99699287
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99699287
    reference: chr 7
allele count: 2
allele frequency: 1.672073036150219e-5
allele num: 119612
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000403663
  ensembl transcript: ENST00000429084
  gene symbol: AP4M1
  hgvsc: ENST00000429084.1:c.-51G>A
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000412185
  ensembl transcript: ENST00000421755
  gene symbol: AP4M1
  hgvsc: ENST00000421755.1:c.-51G>A
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000377625
  ensembl transcript: ENST00000394061
  gene symbol: AP4M1
  hgvsc: ENST00000394061.3:c.-51G>A
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000396928
  ensembl transcript: ENST00000446007
  gene symbol: AP4M1
  hgvsc: ENST00000446007.1:c.-51G>A
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000352603
  ensembl transcript: ENST00000359593
  gene symbol: AP4M1
  hgvsc: ENST00000359593.4:c.-51G>A
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000400598
  ensembl transcript: ENST00000445208
  gene symbol: AP4M1
  hgvsc: ENST00000445208.1:c.-51G>A
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000221838
  ensembl transcript: ENST00000478501
  gene symbol: AP4M1
  hgvsc: ENST00000478501.1:n.29G>A
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166508
  ensembl protein: ENSP00000307288
  ensembl transcript: ENST00000303887
  gene symbol: MCM7
  hgvsc: ENST00000303887.5:c.-370C>T
  variant of: http://identifiers.org/hgnc/6950
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000414286
  ensembl transcript: ENST00000439416
  gene symbol: AP4M1
  hgvsc: ENST00000439416.1:c.-51G>A
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000401613
  ensembl transcript: ENST00000438383
  gene symbol: AP4M1
  hgvsc: ENST00000438383.1:c.-51G>A
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166508
  ensembl protein: ENSP00000344006
  ensembl transcript: ENST00000343023
  gene symbol: MCM7
  hgvsc: ENST00000343023.6:c.-370C>T
  variant of: http://identifiers.org/hgnc/6950
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4339
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1581
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10943
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1936
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8107
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 916
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1231
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6012
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1786
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14576
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3776
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2383
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 962
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: G
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP

7-99699287-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99699287
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99699287
    reference: chr 7
allele count: 1
allele frequency: 8.360365180751095e-6
allele num: 119612
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000414286
  ensembl transcript: ENST00000439416
  gene symbol: AP4M1
  hgvsc: ENST00000439416.1:c.-51G>T
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000403663
  ensembl transcript: ENST00000429084
  gene symbol: AP4M1
  hgvsc: ENST00000429084.1:c.-51G>T
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166508
  ensembl protein: ENSP00000307288
  ensembl transcript: ENST00000303887
  gene symbol: MCM7
  hgvsc: ENST00000303887.5:c.-370C>A
  variant of: http://identifiers.org/hgnc/6950
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000352603
  ensembl transcript: ENST00000359593
  gene symbol: AP4M1
  hgvsc: ENST00000359593.4:c.-51G>T
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000377625
  ensembl transcript: ENST00000394061
  gene symbol: AP4M1
  hgvsc: ENST00000394061.3:c.-51G>T
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000396928
  ensembl transcript: ENST00000446007
  gene symbol: AP4M1
  hgvsc: ENST00000446007.1:c.-51G>T
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000400598
  ensembl transcript: ENST00000445208
  gene symbol: AP4M1
  hgvsc: ENST00000445208.1:c.-51G>T
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166508
  ensembl protein: ENSP00000344006
  ensembl transcript: ENST00000343023
  gene symbol: MCM7
  hgvsc: ENST00000343023.6:c.-370C>A
  variant of: http://identifiers.org/hgnc/6950
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000221838
  ensembl transcript: ENST00000478501
  gene symbol: AP4M1
  hgvsc: ENST00000478501.1:n.29G>T
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000401613
  ensembl transcript: ENST00000438383
  gene symbol: AP4M1
  hgvsc: ENST00000438383.1:c.-51G>T
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000412185
  ensembl transcript: ENST00000421755
  gene symbol: AP4M1
  hgvsc: ENST00000421755.1:c.-51G>T
  variant of: http://identifiers.org/hgnc/574
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1786
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1231
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10943
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1936
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3776
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6012
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8107
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2383
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1581
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4339
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14576
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 916
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 805
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: FS
site quality: ClippingRankSum

7-99699288-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99699288
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99699288
    reference: chr 7
allele count: 1
allele frequency: 8.37058242512514e-6
allele num: 119466
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000401613
  ensembl transcript: ENST00000438383
  gene symbol: AP4M1
  hgvsc: ENST00000438383.1:c.-50C>T
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000400598
  ensembl transcript: ENST00000445208
  gene symbol: AP4M1
  hgvsc: ENST00000445208.1:c.-50C>T
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000221838
  ensembl transcript: ENST00000478501
  gene symbol: AP4M1
  hgvsc: ENST00000478501.1:n.30C>T
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000412185
  ensembl transcript: ENST00000421755
  gene symbol: AP4M1
  hgvsc: ENST00000421755.1:c.-50C>T
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000396928
  ensembl transcript: ENST00000446007
  gene symbol: AP4M1
  hgvsc: ENST00000446007.1:c.-50C>T
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000414286
  ensembl transcript: ENST00000439416
  gene symbol: AP4M1
  hgvsc: ENST00000439416.1:c.-50C>T
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000352603
  ensembl transcript: ENST00000359593
  gene symbol: AP4M1
  hgvsc: ENST00000359593.4:c.-50C>T
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000403663
  ensembl transcript: ENST00000429084
  gene symbol: AP4M1
  hgvsc: ENST00000429084.1:c.-50C>T
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166508
  ensembl protein: ENSP00000344006
  ensembl transcript: ENST00000343023
  gene symbol: MCM7
  hgvsc: ENST00000343023.6:c.-371G>A
  variant of: http://identifiers.org/hgnc/6950
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000377625
  ensembl transcript: ENST00000394061
  gene symbol: AP4M1
  hgvsc: ENST00000394061.3:c.-50C>T
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166508
  ensembl protein: ENSP00000307288
  ensembl transcript: ENST00000303887
  gene symbol: MCM7
  hgvsc: ENST00000303887.5:c.-371G>A
  variant of: http://identifiers.org/hgnc/6950
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3773
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1231
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1581
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 578
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14567
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2383
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8167
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10938
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1933
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 916
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1786
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6012
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4296
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17191
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
population: Other
population: South Asian
population: East Asian
reference allele: C
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: QD

7-99699290-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99699290
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99699290
    reference: chr 7
allele count: 1
allele frequency: 8.367640660039494e-6
allele num: 119508
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000352603
  ensembl transcript: ENST00000359593
  gene symbol: AP4M1
  hgvsc: ENST00000359593.4:c.-48G>C
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000400598
  ensembl transcript: ENST00000445208
  gene symbol: AP4M1
  hgvsc: ENST00000445208.1:c.-48G>C
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000401613
  ensembl transcript: ENST00000438383
  gene symbol: AP4M1
  hgvsc: ENST00000438383.1:c.-48G>C
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000221838
  ensembl transcript: ENST00000478501
  gene symbol: AP4M1
  hgvsc: ENST00000478501.1:n.32G>C
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000396928
  ensembl transcript: ENST00000446007
  gene symbol: AP4M1
  hgvsc: ENST00000446007.1:c.-48G>C
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000377625
  ensembl transcript: ENST00000394061
  gene symbol: AP4M1
  hgvsc: ENST00000394061.3:c.-48G>C
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000414286
  ensembl transcript: ENST00000439416
  gene symbol: AP4M1
  hgvsc: ENST00000439416.1:c.-48G>C
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000412185
  ensembl transcript: ENST00000421755
  gene symbol: AP4M1
  hgvsc: ENST00000421755.1:c.-48G>C
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000403663
  ensembl transcript: ENST00000429084
  gene symbol: AP4M1
  hgvsc: ENST00000429084.1:c.-48G>C
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166508
  ensembl protein: ENSP00000307288
  ensembl transcript: ENST00000303887
  gene symbol: MCM7
  hgvsc: ENST00000303887.5:c.-373C>G
  variant of: http://identifiers.org/hgnc/6950
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166508
  ensembl protein: ENSP00000344006
  ensembl transcript: ENST00000343023
  gene symbol: MCM7
  hgvsc: ENST00000343023.6:c.-373C>G
  variant of: http://identifiers.org/hgnc/6950
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1579
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3981
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14654
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1786
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8398
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1925
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 578
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6016
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2383
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1231
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3767
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10944
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 916
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12591
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
population: South Asian
population: Other
reference allele: G
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: DP

7-99699290-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99699290
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99699290
    reference: chr 7
allele count: 1
allele frequency: 8.367640660039494e-6
allele num: 119508
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000377625
  ensembl transcript: ENST00000394061
  gene symbol: AP4M1
  hgvsc: ENST00000394061.3:c.-48G>T
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000403663
  ensembl transcript: ENST00000429084
  gene symbol: AP4M1
  hgvsc: ENST00000429084.1:c.-48G>T
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000396928
  ensembl transcript: ENST00000446007
  gene symbol: AP4M1
  hgvsc: ENST00000446007.1:c.-48G>T
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000414286
  ensembl transcript: ENST00000439416
  gene symbol: AP4M1
  hgvsc: ENST00000439416.1:c.-48G>T
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000221838
  ensembl transcript: ENST00000478501
  gene symbol: AP4M1
  hgvsc: ENST00000478501.1:n.32G>T
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000412185
  ensembl transcript: ENST00000421755
  gene symbol: AP4M1
  hgvsc: ENST00000421755.1:c.-48G>T
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000401613
  ensembl transcript: ENST00000438383
  gene symbol: AP4M1
  hgvsc: ENST00000438383.1:c.-48G>T
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000400598
  ensembl transcript: ENST00000445208
  gene symbol: AP4M1
  hgvsc: ENST00000445208.1:c.-48G>T
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166508
  ensembl protein: ENSP00000307288
  ensembl transcript: ENST00000303887
  gene symbol: MCM7
  hgvsc: ENST00000303887.5:c.-373C>A
  variant of: http://identifiers.org/hgnc/6950
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000352603
  ensembl transcript: ENST00000359593
  gene symbol: AP4M1
  hgvsc: ENST00000359593.4:c.-48G>T
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166508
  ensembl protein: ENSP00000344006
  ensembl transcript: ENST00000343023
  gene symbol: MCM7
  hgvsc: ENST00000343023.6:c.-373C>A
  variant of: http://identifiers.org/hgnc/6950
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1925
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3767
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3981
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 578
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 916
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14654
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10944
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2383
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1579
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6016
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8398
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1231
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1786
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 490
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Other
population: Latino
population: African
population: East Asian
reference allele: G
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ

7-99699291-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99699291
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99699291
    reference: chr 7
allele count: 4
allele frequency: 3.344705331460298e-5
allele num: 119592
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000403663
  ensembl transcript: ENST00000429084
  gene symbol: AP4M1
  hgvsc: ENST00000429084.1:c.-47G>A
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166508
  ensembl protein: ENSP00000307288
  ensembl transcript: ENST00000303887
  gene symbol: MCM7
  hgvsc: ENST00000303887.5:c.-374C>T
  variant of: http://identifiers.org/hgnc/6950
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000401613
  ensembl transcript: ENST00000438383
  gene symbol: AP4M1
  hgvsc: ENST00000438383.1:c.-47G>A
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000396928
  ensembl transcript: ENST00000446007
  gene symbol: AP4M1
  hgvsc: ENST00000446007.1:c.-47G>A
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000412185
  ensembl transcript: ENST00000421755
  gene symbol: AP4M1
  hgvsc: ENST00000421755.1:c.-47G>A
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000400598
  ensembl transcript: ENST00000445208
  gene symbol: AP4M1
  hgvsc: ENST00000445208.1:c.-47G>A
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000377625
  ensembl transcript: ENST00000394061
  gene symbol: AP4M1
  hgvsc: ENST00000394061.3:c.-47G>A
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166508
  ensembl protein: ENSP00000344006
  ensembl transcript: ENST00000343023
  gene symbol: MCM7
  hgvsc: ENST00000343023.6:c.-374C>T
  variant of: http://identifiers.org/hgnc/6950
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000352603
  ensembl transcript: ENST00000359593
  gene symbol: AP4M1
  hgvsc: ENST00000359593.4:c.-47G>A
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000414286
  ensembl transcript: ENST00000439416
  gene symbol: AP4M1
  hgvsc: ENST00000439416.1:c.-47G>A
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000221838
  ensembl transcript: ENST00000478501
  gene symbol: AP4M1
  hgvsc: ENST00000478501.1:n.33G>A
  variant of: http://identifiers.org/hgnc/574
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6014
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1231
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3763
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3832
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14688
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1579
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2380
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8508
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1786
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 916
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1924
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10956
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: QD

http://identifiers.org/exac.variant/7-99699293-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99699293
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99699293
    reference: chr 7
allele count: 3
allele frequency: 2.508109554225329e-5
allele num: 119612
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000377625
  ensembl transcript: ENST00000394061
  gene symbol: AP4M1
  hgvsc: ENST00000394061.3:c.-45C>A
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000414286
  ensembl transcript: ENST00000439416
  gene symbol: AP4M1
  hgvsc: ENST00000439416.1:c.-45C>A
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000401613
  ensembl transcript: ENST00000438383
  gene symbol: AP4M1
  hgvsc: ENST00000438383.1:c.-45C>A
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000396928
  ensembl transcript: ENST00000446007
  gene symbol: AP4M1
  hgvsc: ENST00000446007.1:c.-45C>A
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000400598
  ensembl transcript: ENST00000445208
  gene symbol: AP4M1
  hgvsc: ENST00000445208.1:c.-45C>A
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000221838
  ensembl transcript: ENST00000478501
  gene symbol: AP4M1
  hgvsc: ENST00000478501.1:n.35C>A
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000352603
  ensembl transcript: ENST00000359593
  gene symbol: AP4M1
  hgvsc: ENST00000359593.4:c.-45C>A
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166508
  ensembl protein: ENSP00000344006
  ensembl transcript: ENST00000343023
  gene symbol: MCM7
  hgvsc: ENST00000343023.6:c.-376G>T
  variant of: http://identifiers.org/hgnc/6950
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000412185
  ensembl transcript: ENST00000421755
  gene symbol: AP4M1
  hgvsc: ENST00000421755.1:c.-45C>A
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166508
  ensembl protein: ENSP00000307288
  ensembl transcript: ENST00000303887
  gene symbol: MCM7
  hgvsc: ENST00000303887.5:c.-376G>T
  variant of: http://identifiers.org/hgnc/6950
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000403663
  ensembl transcript: ENST00000429084
  gene symbol: AP4M1
  hgvsc: ENST00000429084.1:c.-45C>A
  variant of: http://identifiers.org/hgnc/574
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 578
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2380
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3472
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1904
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3764
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1579
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10997
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1786
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8785
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1231
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14753
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 916
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6015
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1213
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: European (Finnish)
reference allele: C
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD

7-99699297-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99699297
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99699297
    reference: chr 7
allele count: 1
allele frequency: 8.360085607276618e-6
allele num: 119616
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000377625
  ensembl transcript: ENST00000394061
  gene symbol: AP4M1
  hgvsc: ENST00000394061.3:c.-41C>T
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000221838
  ensembl transcript: ENST00000478501
  gene symbol: AP4M1
  hgvsc: ENST00000478501.1:n.39C>T
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000403663
  ensembl transcript: ENST00000429084
  gene symbol: AP4M1
  hgvsc: ENST00000429084.1:c.-41C>T
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000414286
  ensembl transcript: ENST00000439416
  gene symbol: AP4M1
  hgvsc: ENST00000439416.1:c.-41C>T
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000412185
  ensembl transcript: ENST00000421755
  gene symbol: AP4M1
  hgvsc: ENST00000421755.1:c.-41C>T
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166508
  ensembl protein: ENSP00000344006
  ensembl transcript: ENST00000343023
  gene symbol: MCM7
  hgvsc: ENST00000343023.6:c.-380G>A
  variant of: http://identifiers.org/hgnc/6950
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000401613
  ensembl transcript: ENST00000438383
  gene symbol: AP4M1
  hgvsc: ENST00000438383.1:c.-41C>T
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000396928
  ensembl transcript: ENST00000446007
  gene symbol: AP4M1
  hgvsc: ENST00000446007.1:c.-41C>T
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000352603
  ensembl transcript: ENST00000359593
  gene symbol: AP4M1
  hgvsc: ENST00000359593.4:c.-41C>T
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166508
  ensembl protein: ENSP00000307288
  ensembl transcript: ENST00000303887
  gene symbol: MCM7
  hgvsc: ENST00000303887.5:c.-380G>A
  variant of: http://identifiers.org/hgnc/6950
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000400598
  ensembl transcript: ENST00000445208
  gene symbol: AP4M1
  hgvsc: ENST00000445208.1:c.-41C>T
  variant of: http://identifiers.org/hgnc/574
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2378
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1579
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1813
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1232
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6022
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3771
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14973
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11107
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9371
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2635
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 916
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1786
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 211
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: South Asian
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ

7-99699298-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99699298
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99699298
    reference: chr 7
allele count: 1
allele frequency: 8.357570287166115e-6
allele num: 119652
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000401613
  ensembl transcript: ENST00000438383
  gene symbol: AP4M1
  hgvsc: ENST00000438383.1:c.-40C>G
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000414286
  ensembl transcript: ENST00000439416
  gene symbol: AP4M1
  hgvsc: ENST00000439416.1:c.-40C>G
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000412185
  ensembl transcript: ENST00000421755
  gene symbol: AP4M1
  hgvsc: ENST00000421755.1:c.-40C>G
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000352603
  ensembl transcript: ENST00000359593
  gene symbol: AP4M1
  hgvsc: ENST00000359593.4:c.-40C>G
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000400598
  ensembl transcript: ENST00000445208
  gene symbol: AP4M1
  hgvsc: ENST00000445208.1:c.-40C>G
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000403663
  ensembl transcript: ENST00000429084
  gene symbol: AP4M1
  hgvsc: ENST00000429084.1:c.-40C>G
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000396928
  ensembl transcript: ENST00000446007
  gene symbol: AP4M1
  hgvsc: ENST00000446007.1:c.-40C>G
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000377625
  ensembl transcript: ENST00000394061
  gene symbol: AP4M1
  hgvsc: ENST00000394061.3:c.-40C>G
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000221838
  ensembl transcript: ENST00000478501
  gene symbol: AP4M1
  hgvsc: ENST00000478501.1:n.40C>G
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166508
  ensembl protein: ENSP00000344006
  ensembl transcript: ENST00000343023
  gene symbol: MCM7
  hgvsc: ENST00000343023.6:c.-381G>C
  variant of: http://identifiers.org/hgnc/6950
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166508
  ensembl protein: ENSP00000307288
  ensembl transcript: ENST00000303887
  gene symbol: MCM7
  hgvsc: ENST00000303887.5:c.-381G>C
  variant of: http://identifiers.org/hgnc/6950
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1231
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2378
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15013
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9469
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 916
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11124
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1786
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1787
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1579
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2512
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6022
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3770
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1039
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: South Asian
population: East Asian
population: Latino
population: Other
reference allele: C
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum

7-99699299-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99699299
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99699299
    reference: chr 7
allele count: 2
allele frequency: 1.67123470820242e-5
allele num: 119672
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000401613
  ensembl transcript: ENST00000438383
  gene symbol: AP4M1
  hgvsc: ENST00000438383.1:c.-39C>T
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000352603
  ensembl transcript: ENST00000359593
  gene symbol: AP4M1
  hgvsc: ENST00000359593.4:c.-39C>T
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000414286
  ensembl transcript: ENST00000439416
  gene symbol: AP4M1
  hgvsc: ENST00000439416.1:c.-39C>T
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000377625
  ensembl transcript: ENST00000394061
  gene symbol: AP4M1
  hgvsc: ENST00000394061.3:c.-39C>T
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166508
  ensembl protein: ENSP00000307288
  ensembl transcript: ENST00000303887
  gene symbol: MCM7
  hgvsc: ENST00000303887.5:c.-382G>A
  variant of: http://identifiers.org/hgnc/6950
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000396928
  ensembl transcript: ENST00000446007
  gene symbol: AP4M1
  hgvsc: ENST00000446007.1:c.-39C>T
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000412185
  ensembl transcript: ENST00000421755
  gene symbol: AP4M1
  hgvsc: ENST00000421755.1:c.-39C>T
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000400598
  ensembl transcript: ENST00000445208
  gene symbol: AP4M1
  hgvsc: ENST00000445208.1:c.-39C>T
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166508
  ensembl protein: ENSP00000344006
  ensembl transcript: ENST00000343023
  gene symbol: MCM7
  hgvsc: ENST00000343023.6:c.-382G>A
  variant of: http://identifiers.org/hgnc/6950
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000221838
  ensembl transcript: ENST00000478501
  gene symbol: AP4M1
  hgvsc: ENST00000478501.1:n.41C>T
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000403663
  ensembl transcript: ENST00000429084
  gene symbol: AP4M1
  hgvsc: ENST00000429084.1:c.-39C>T
  variant of: http://identifiers.org/hgnc/574
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6031
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2366
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3772
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15062
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1753
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 578
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1231
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9571
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1580
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2378
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11147
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 916
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1786
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 881
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: Other
population: South Asian
population: East Asian
population: African
population: European (Finnish)
reference allele: C
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: MQ

7-99699302-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99699302
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99699302
    reference: chr 7
allele count: 3
allele frequency: 2.506391297809414e-5
allele num: 119694
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166508
  ensembl protein: ENSP00000307288
  ensembl transcript: ENST00000303887
  gene symbol: MCM7
  hgvsc: ENST00000303887.5:c.-385G>C
  variant of: http://identifiers.org/hgnc/6950
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000377625
  ensembl transcript: ENST00000394061
  gene symbol: AP4M1
  hgvsc: ENST00000394061.3:c.-36C>G
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000401613
  ensembl transcript: ENST00000438383
  gene symbol: AP4M1
  hgvsc: ENST00000438383.1:c.-36C>G
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000221838
  ensembl transcript: ENST00000478501
  gene symbol: AP4M1
  hgvsc: ENST00000478501.1:n.44C>G
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000396928
  ensembl transcript: ENST00000446007
  gene symbol: AP4M1
  hgvsc: ENST00000446007.1:c.-36C>G
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000352603
  ensembl transcript: ENST00000359593
  gene symbol: AP4M1
  hgvsc: ENST00000359593.4:c.-36C>G
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166508
  ensembl protein: ENSP00000344006
  ensembl transcript: ENST00000343023
  gene symbol: MCM7
  hgvsc: ENST00000343023.6:c.-385G>C
  variant of: http://identifiers.org/hgnc/6950
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000414286
  ensembl transcript: ENST00000439416
  gene symbol: AP4M1
  hgvsc: ENST00000439416.1:c.-36C>G
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000403663
  ensembl transcript: ENST00000429084
  gene symbol: AP4M1
  hgvsc: ENST00000429084.1:c.-36C>G
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000412185
  ensembl transcript: ENST00000421755
  gene symbol: AP4M1
  hgvsc: ENST00000421755.1:c.-36C>G
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000400598
  ensembl transcript: ENST00000445208
  gene symbol: AP4M1
  hgvsc: ENST00000445208.1:c.-36C>G
  variant of: http://identifiers.org/hgnc/574
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15267
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 916
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1580
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11189
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1232
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1786
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1606
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6024
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9949
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3770
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1904
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2379
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 514
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
reference allele: C
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum

7-99699309-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99699309
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99699309
    reference: chr 7
allele count: 1
allele frequency: 8.348220994106157e-6
allele num: 119786
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166508
  ensembl protein: ENSP00000344006
  ensembl transcript: ENST00000343023
  gene symbol: MCM7
  hgvsc: ENST00000343023.6:c.-392G>A
  variant of: http://identifiers.org/hgnc/6950
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000352603
  ensembl transcript: ENST00000359593
  gene symbol: AP4M1
  hgvsc: ENST00000359593.4:c.-29C>T
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000400598
  ensembl transcript: ENST00000445208
  gene symbol: AP4M1
  hgvsc: ENST00000445208.1:c.-29C>T
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000403663
  ensembl transcript: ENST00000429084
  gene symbol: AP4M1
  hgvsc: ENST00000429084.1:c.-29C>T
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166508
  ensembl protein: ENSP00000307288
  ensembl transcript: ENST00000303887
  gene symbol: MCM7
  hgvsc: ENST00000303887.5:c.-392G>A
  variant of: http://identifiers.org/hgnc/6950
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000401613
  ensembl transcript: ENST00000438383
  gene symbol: AP4M1
  hgvsc: ENST00000438383.1:c.-29C>T
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000414286
  ensembl transcript: ENST00000439416
  gene symbol: AP4M1
  hgvsc: ENST00000439416.1:c.-29C>T
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000396928
  ensembl transcript: ENST00000446007
  gene symbol: AP4M1
  hgvsc: ENST00000446007.1:c.-29C>T
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000221838
  ensembl transcript: ENST00000478501
  gene symbol: AP4M1
  hgvsc: ENST00000478501.1:n.51C>T
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000377625
  ensembl transcript: ENST00000394061
  gene symbol: AP4M1
  hgvsc: ENST00000394061.3:c.-29C>T
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000412185
  ensembl transcript: ENST00000421755
  gene symbol: AP4M1
  hgvsc: ENST00000421755.1:c.-29C>T
  variant of: http://identifiers.org/hgnc/574
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2384
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1581
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11343
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 901
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1786
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15688
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10775
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1210
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6048
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 559
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3775
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 918
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1231
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD

7-99699315-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99699315
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99699315
    reference: chr 7
allele count: 1
allele frequency: 8.3380582329987e-6
allele num: 119932
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000401613
  ensembl transcript: ENST00000438383
  gene symbol: AP4M1
  hgvsc: ENST00000438383.1:c.-23C>T
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166508
  ensembl protein: ENSP00000307288
  ensembl transcript: ENST00000303887
  gene symbol: MCM7
  hgvsc: ENST00000303887.5:c.-398G>A
  variant of: http://identifiers.org/hgnc/6950
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000403663
  ensembl transcript: ENST00000429084
  gene symbol: AP4M1
  hgvsc: ENST00000429084.1:c.-23C>T
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000377625
  ensembl transcript: ENST00000394061
  gene symbol: AP4M1
  hgvsc: ENST00000394061.3:c.-23C>T
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000396928
  ensembl transcript: ENST00000446007
  gene symbol: AP4M1
  hgvsc: ENST00000446007.1:c.-23C>T
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000352603
  ensembl transcript: ENST00000359593
  gene symbol: AP4M1
  hgvsc: ENST00000359593.4:c.-23C>T
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000414286
  ensembl transcript: ENST00000439416
  gene symbol: AP4M1
  hgvsc: ENST00000439416.1:c.-23C>T
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166508
  ensembl protein: ENSP00000344006
  ensembl transcript: ENST00000343023
  gene symbol: MCM7
  hgvsc: ENST00000343023.6:c.-398G>A
  variant of: http://identifiers.org/hgnc/6950
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000400598
  ensembl transcript: ENST00000445208
  gene symbol: AP4M1
  hgvsc: ENST00000445208.1:c.-23C>T
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000412185
  ensembl transcript: ENST00000421755
  gene symbol: AP4M1
  hgvsc: ENST00000421755.1:c.-23C>T
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000221838
  ensembl transcript: ENST00000478501
  gene symbol: AP4M1
  hgvsc: ENST00000478501.1:n.57C>T
  variant of: http://identifiers.org/hgnc/574
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11367
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 807
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6071
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3773
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1580
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1232
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 522
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11404
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1785
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15985
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2381
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 918
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24281
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: Other
population: East Asian
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: C
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ

7-99699316-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99699316
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99699316
    reference: chr 7
allele count: 1
allele frequency: 8.3365290027844e-6
allele num: 119954
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166508
  ensembl protein: ENSP00000344006
  ensembl transcript: ENST00000343023
  gene symbol: MCM7
  hgvsc: ENST00000343023.6:c.-399A>G
  variant of: http://identifiers.org/hgnc/6950
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166508
  ensembl protein: ENSP00000307288
  ensembl transcript: ENST00000303887
  gene symbol: MCM7
  hgvsc: ENST00000303887.5:c.-399A>G
  variant of: http://identifiers.org/hgnc/6950
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000403663
  ensembl transcript: ENST00000429084
  gene symbol: AP4M1
  hgvsc: ENST00000429084.1:c.-22T>C
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000400598
  ensembl transcript: ENST00000445208
  gene symbol: AP4M1
  hgvsc: ENST00000445208.1:c.-22T>C
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000412185
  ensembl transcript: ENST00000421755
  gene symbol: AP4M1
  hgvsc: ENST00000421755.1:c.-22T>C
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000221838
  ensembl transcript: ENST00000478501
  gene symbol: AP4M1
  hgvsc: ENST00000478501.1:n.58T>C
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000352603
  ensembl transcript: ENST00000359593
  gene symbol: AP4M1
  hgvsc: ENST00000359593.4:c.-22T>C
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000377625
  ensembl transcript: ENST00000394061
  gene symbol: AP4M1
  hgvsc: ENST00000394061.3:c.-22T>C
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000401613
  ensembl transcript: ENST00000438383
  gene symbol: AP4M1
  hgvsc: ENST00000438383.1:c.-22T>C
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000396928
  ensembl transcript: ENST00000446007
  gene symbol: AP4M1
  hgvsc: ENST00000446007.1:c.-22T>C
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000414286
  ensembl transcript: ENST00000439416
  gene symbol: AP4M1
  hgvsc: ENST00000439416.1:c.-22T>C
  variant of: http://identifiers.org/hgnc/574
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3771
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11428
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2380
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16008
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 750
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11418
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1580
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 918
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6072
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1784
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 644
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1232
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2039
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: South Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: East Asian
reference allele: T
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: FS

7-99699323-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99699323
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99699323
    reference: chr 7
allele count: 1
allele frequency: 8.325701440346349e-6
allele num: 120110
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000403663
  ensembl transcript: ENST00000429084
  gene symbol: AP4M1
  hgvsc: ENST00000429084.1:c.-15C>G
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000352603
  ensembl transcript: ENST00000359593
  gene symbol: AP4M1
  hgvsc: ENST00000359593.4:c.-15C>G
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000400598
  ensembl transcript: ENST00000445208
  gene symbol: AP4M1
  hgvsc: ENST00000445208.1:c.-15C>G
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166508
  ensembl protein: ENSP00000344006
  ensembl transcript: ENST00000343023
  gene symbol: MCM7
  hgvsc: ENST00000343023.6:c.-406G>C
  variant of: http://identifiers.org/hgnc/6950
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000396928
  ensembl transcript: ENST00000446007
  gene symbol: AP4M1
  hgvsc: ENST00000446007.1:c.-15C>G
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166508
  ensembl protein: ENSP00000307288
  ensembl transcript: ENST00000303887
  gene symbol: MCM7
  hgvsc: ENST00000303887.5:c.-406G>C
  variant of: http://identifiers.org/hgnc/6950
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000414286
  ensembl transcript: ENST00000439416
  gene symbol: AP4M1
  hgvsc: ENST00000439416.1:c.-15C>G
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000377625
  ensembl transcript: ENST00000394061
  gene symbol: AP4M1
  hgvsc: ENST00000394061.3:c.-15C>G
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000221838
  ensembl transcript: ENST00000478501
  gene symbol: AP4M1
  hgvsc: ENST00000478501.1:n.65C>G
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000401613
  ensembl transcript: ENST00000438383
  gene symbol: AP4M1
  hgvsc: ENST00000438383.1:c.-15C>G
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000412185
  ensembl transcript: ENST00000421755
  gene symbol: AP4M1
  hgvsc: ENST00000421755.1:c.-15C>G
  variant of: http://identifiers.org/hgnc/574
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16204
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2380
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1784
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11454
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11711
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1580
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6082
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1232
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 919
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3770
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Latino
population: African
population: South Asian
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS

7-99699323-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99699323
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99699323
    reference: chr 7
allele count: 1
allele frequency: 8.325701440346349e-6
allele num: 120110
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000412185
  ensembl transcript: ENST00000421755
  gene symbol: AP4M1
  hgvsc: ENST00000421755.1:c.-15C>T
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000414286
  ensembl transcript: ENST00000439416
  gene symbol: AP4M1
  hgvsc: ENST00000439416.1:c.-15C>T
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000352603
  ensembl transcript: ENST00000359593
  gene symbol: AP4M1
  hgvsc: ENST00000359593.4:c.-15C>T
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000401613
  ensembl transcript: ENST00000438383
  gene symbol: AP4M1
  hgvsc: ENST00000438383.1:c.-15C>T
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000221838
  ensembl transcript: ENST00000478501
  gene symbol: AP4M1
  hgvsc: ENST00000478501.1:n.65C>T
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000403663
  ensembl transcript: ENST00000429084
  gene symbol: AP4M1
  hgvsc: ENST00000429084.1:c.-15C>T
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000377625
  ensembl transcript: ENST00000394061
  gene symbol: AP4M1
  hgvsc: ENST00000394061.3:c.-15C>T
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000400598
  ensembl transcript: ENST00000445208
  gene symbol: AP4M1
  hgvsc: ENST00000445208.1:c.-15C>T
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000396928
  ensembl transcript: ENST00000446007
  gene symbol: AP4M1
  hgvsc: ENST00000446007.1:c.-15C>T
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166508
  ensembl protein: ENSP00000307288
  ensembl transcript: ENST00000303887
  gene symbol: MCM7
  hgvsc: ENST00000303887.5:c.-406G>A
  variant of: http://identifiers.org/hgnc/6950
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166508
  ensembl protein: ENSP00000344006
  ensembl transcript: ENST00000343023
  gene symbol: MCM7
  hgvsc: ENST00000343023.6:c.-406G>A
  variant of: http://identifiers.org/hgnc/6950
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1232
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3770
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6082
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 919
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1580
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11711
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2380
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1784
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11454
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16204
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: QD

7-99699325-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99699325
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99699325
    reference: chr 7
allele count: 1
allele frequency: 8.32209850035785e-6
allele num: 120162
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000401613
  ensembl transcript: ENST00000438383
  gene symbol: AP4M1
  hgvsc: ENST00000438383.1:c.-13C>T
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166508
  ensembl protein: ENSP00000307288
  ensembl transcript: ENST00000303887
  gene symbol: MCM7
  hgvsc: ENST00000303887.5:c.-408G>A
  variant of: http://identifiers.org/hgnc/6950
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166508
  ensembl protein: ENSP00000344006
  ensembl transcript: ENST00000343023
  gene symbol: MCM7
  hgvsc: ENST00000343023.6:c.-408G>A
  variant of: http://identifiers.org/hgnc/6950
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000412185
  ensembl transcript: ENST00000421755
  gene symbol: AP4M1
  hgvsc: ENST00000421755.1:c.-13C>T
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000400598
  ensembl transcript: ENST00000445208
  gene symbol: AP4M1
  hgvsc: ENST00000445208.1:c.-13C>T
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000403663
  ensembl transcript: ENST00000429084
  gene symbol: AP4M1
  hgvsc: ENST00000429084.1:c.-13C>T
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000377625
  ensembl transcript: ENST00000394061
  gene symbol: AP4M1
  hgvsc: ENST00000394061.3:c.-13C>T
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000396928
  ensembl transcript: ENST00000446007
  gene symbol: AP4M1
  hgvsc: ENST00000446007.1:c.-13C>T
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000352603
  ensembl transcript: ENST00000359593
  gene symbol: AP4M1
  hgvsc: ENST00000359593.4:c.-13C>T
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000221838
  ensembl transcript: ENST00000478501
  gene symbol: AP4M1
  hgvsc: ENST00000478501.1:n.67C>T
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000414286
  ensembl transcript: ENST00000439416
  gene symbol: AP4M1
  hgvsc: ENST00000439416.1:c.-13C>T
  variant of: http://identifiers.org/hgnc/574
canonical: true
consequence: 5' UTR
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2380
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11473
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1232
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1580
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 455
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3770
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1784
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11783
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16244
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 919
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6078
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: African
population: Other
population: South Asian
population: Latino
reference allele: C
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: DP
site quality: ReadPosRankSum

7-99699327-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99699327
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99699327
    reference: chr 7
allele count: 1
allele frequency: 8.320021299254527e-6
allele num: 120192
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166508
  ensembl protein: ENSP00000344006
  ensembl transcript: ENST00000343023
  gene symbol: MCM7
  hgvsc: ENST00000343023.6:c.-410G>A
  variant of: http://identifiers.org/hgnc/6950
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000352603
  ensembl transcript: ENST00000359593
  gene symbol: AP4M1
  hgvsc: ENST00000359593.4:c.-11C>T
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000401613
  ensembl transcript: ENST00000438383
  gene symbol: AP4M1
  hgvsc: ENST00000438383.1:c.-11C>T
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000396928
  ensembl transcript: ENST00000446007
  gene symbol: AP4M1
  hgvsc: ENST00000446007.1:c.-11C>T
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000403663
  ensembl transcript: ENST00000429084
  gene symbol: AP4M1
  hgvsc: ENST00000429084.1:c.-11C>T
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000400598
  ensembl transcript: ENST00000445208
  gene symbol: AP4M1
  hgvsc: ENST00000445208.1:c.-11C>T
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166508
  ensembl protein: ENSP00000307288
  ensembl transcript: ENST00000303887
  gene symbol: MCM7
  hgvsc: ENST00000303887.5:c.-410G>A
  variant of: http://identifiers.org/hgnc/6950
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000221838
  ensembl transcript: ENST00000478501
  gene symbol: AP4M1
  hgvsc: ENST00000478501.1:n.69C>T
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000412185
  ensembl transcript: ENST00000421755
  gene symbol: AP4M1
  hgvsc: ENST00000421755.1:c.-11C>T
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000377625
  ensembl transcript: ENST00000394061
  gene symbol: AP4M1
  hgvsc: ENST00000394061.3:c.-11C>T
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000414286
  ensembl transcript: ENST00000439416
  gene symbol: AP4M1
  hgvsc: ENST00000439416.1:c.-11C>T
  variant of: http://identifiers.org/hgnc/574
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11825
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6079
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16282
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11485
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3772
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1784
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1580
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1232
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2382
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 920
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: Latino
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: QD
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD

7-99699328-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99699328
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99699328
    reference: chr 7
allele count: 2
allele frequency: 1.663782776520698e-5
allele num: 120208
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166508
  ensembl protein: ENSP00000344006
  ensembl transcript: ENST00000343023
  gene symbol: MCM7
  hgvsc: ENST00000343023.6:c.-411G>A
  variant of: http://identifiers.org/hgnc/6950
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000377625
  ensembl transcript: ENST00000394061
  gene symbol: AP4M1
  hgvsc: ENST00000394061.3:c.-10C>T
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000396928
  ensembl transcript: ENST00000446007
  gene symbol: AP4M1
  hgvsc: ENST00000446007.1:c.-10C>T
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000401613
  ensembl transcript: ENST00000438383
  gene symbol: AP4M1
  hgvsc: ENST00000438383.1:c.-10C>T
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000403663
  ensembl transcript: ENST00000429084
  gene symbol: AP4M1
  hgvsc: ENST00000429084.1:c.-10C>T
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000414286
  ensembl transcript: ENST00000439416
  gene symbol: AP4M1
  hgvsc: ENST00000439416.1:c.-10C>T
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000221838
  ensembl transcript: ENST00000478501
  gene symbol: AP4M1
  hgvsc: ENST00000478501.1:n.70C>T
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000352603
  ensembl transcript: ENST00000359593
  gene symbol: AP4M1
  hgvsc: ENST00000359593.4:c.-10C>T
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166508
  ensembl protein: ENSP00000307288
  ensembl transcript: ENST00000303887
  gene symbol: MCM7
  hgvsc: ENST00000303887.5:c.-411G>A
  variant of: http://identifiers.org/hgnc/6950
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000400598
  ensembl transcript: ENST00000445208
  gene symbol: AP4M1
  hgvsc: ENST00000445208.1:c.-10C>T
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000412185
  ensembl transcript: ENST00000421755
  gene symbol: AP4M1
  hgvsc: ENST00000421755.1:c.-10C>T
  variant of: http://identifiers.org/hgnc/574
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2383
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6085
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1784
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1580
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11855
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16301
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3769
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1233
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11494
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 919
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25210
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD

7-99699332-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99699332
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99699332
    reference: chr 7
allele count: 2
allele frequency: 1.662648599218555e-5
allele num: 120290
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166508
  ensembl protein: ENSP00000344006
  ensembl transcript: ENST00000343023
  gene symbol: MCM7
  hgvsc: ENST00000343023.6:c.-415T>C
  variant of: http://identifiers.org/hgnc/6950
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000377625
  ensembl transcript: ENST00000394061
  gene symbol: AP4M1
  hgvsc: ENST00000394061.3:c.-6A>G
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000414286
  ensembl transcript: ENST00000439416
  gene symbol: AP4M1
  hgvsc: ENST00000439416.1:c.-6A>G
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000400598
  ensembl transcript: ENST00000445208
  gene symbol: AP4M1
  hgvsc: ENST00000445208.1:c.-6A>G
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000412185
  ensembl transcript: ENST00000421755
  gene symbol: AP4M1
  hgvsc: ENST00000421755.1:c.-6A>G
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000403663
  ensembl transcript: ENST00000429084
  gene symbol: AP4M1
  hgvsc: ENST00000429084.1:c.-6A>G
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000401613
  ensembl transcript: ENST00000438383
  gene symbol: AP4M1
  hgvsc: ENST00000438383.1:c.-6A>G
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000396928
  ensembl transcript: ENST00000446007
  gene symbol: AP4M1
  hgvsc: ENST00000446007.1:c.-6A>G
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000352603
  ensembl transcript: ENST00000359593
  gene symbol: AP4M1
  hgvsc: ENST00000359593.4:c.-6A>G
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000221838
  ensembl transcript: ENST00000478501
  gene symbol: AP4M1
  hgvsc: ENST00000478501.1:n.74A>G
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166508
  ensembl protein: ENSP00000307288
  ensembl transcript: ENST00000303887
  gene symbol: MCM7
  hgvsc: ENST00000303887.5:c.-415T>C
  variant of: http://identifiers.org/hgnc/6950
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1784
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3771
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1232
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 919
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1581
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16374
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2383
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11510
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6080
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11938
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8330
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: A
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: FS
site quality: QD
site quality: ClippingRankSum

7-99699345-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99699345
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99699345
    reference: chr 7
allele count: 2
allele frequency: 1.6604400166044e-5
allele num: 120450
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000414286
  ensembl transcript: ENST00000439416
  gene symbol: AP4M1
  hgvsc: ENST00000439416.1:c.8C>T
  hgvsp: ENSP00000414286.1:p.Ser3Phe
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000396928
  ensembl transcript: ENST00000446007
  gene symbol: AP4M1
  hgvsc: ENST00000446007.1:c.8C>T
  hgvsp: ENSP00000396928.1:p.Ser3Phe
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000403663
  ensembl transcript: ENST00000429084
  gene symbol: AP4M1
  hgvsc: ENST00000429084.1:c.8C>T
  hgvsp: ENSP00000403663.1:p.Ser3Phe
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000400598
  ensembl transcript: ENST00000445208
  gene symbol: AP4M1
  hgvsc: ENST00000445208.1:c.8C>T
  hgvsp: ENSP00000400598.1:p.Ser3Phe
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000401613
  ensembl transcript: ENST00000438383
  gene symbol: AP4M1
  hgvsc: ENST00000438383.1:c.8C>T
  hgvsp: ENSP00000401613.1:p.Ser3Phe
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000412185
  ensembl transcript: ENST00000421755
  gene symbol: AP4M1
  hgvsc: ENST00000421755.1:c.8C>T
  hgvsp: ENSP00000412185.1:p.Ser3Phe
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000221838
  ensembl transcript: ENST00000478501
  gene symbol: AP4M1
  hgvsc: ENST00000478501.1:n.87C>T
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000352603
  ensembl transcript: ENST00000359593
  gene symbol: AP4M1
  hgvsc: ENST00000359593.4:c.8C>T
  hgvsp: ENSP00000352603.4:p.Ser3Phe
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166508
  ensembl protein: ENSP00000344006
  ensembl transcript: ENST00000343023
  gene symbol: MCM7
  hgvsc: ENST00000343023.6:c.-428G>A
  variant of: http://identifiers.org/hgnc/6950
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000377625
  ensembl transcript: ENST00000394061
  gene symbol: AP4M1
  hgvsc: ENST00000394061.3:c.8C>T
  hgvsp: ENSP00000377625.3:p.Ser3Phe
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166508
  ensembl protein: ENSP00000307288
  ensembl transcript: ENST00000303887
  gene symbol: MCM7
  hgvsc: ENST00000303887.5:c.-428G>A
  variant of: http://identifiers.org/hgnc/6950
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11979
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1785
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16508
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1233
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3772
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11556
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1581
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 919
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2382
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6090
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser3Phe
num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
population: Other
population: European (Finnish)
reference allele: C
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum

7-99699347-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99699347
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99699347
    reference: chr 7
allele count: 1
allele frequency: 8.301924386072691e-6
allele num: 120454
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000403663
  ensembl transcript: ENST00000429084
  gene symbol: AP4M1
  hgvsc: ENST00000429084.1:c.10C>T
  hgvsp: ENSP00000403663.1:p.Gln4Ter
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166508
  ensembl protein: ENSP00000344006
  ensembl transcript: ENST00000343023
  gene symbol: MCM7
  hgvsc: ENST00000343023.6:c.-430G>A
  variant of: http://identifiers.org/hgnc/6950
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000352603
  ensembl transcript: ENST00000359593
  gene symbol: AP4M1
  hgvsc: ENST00000359593.4:c.10C>T
  hgvsp: ENSP00000352603.4:p.Gln4Ter
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166508
  ensembl protein: ENSP00000307288
  ensembl transcript: ENST00000303887
  gene symbol: MCM7
  hgvsc: ENST00000303887.5:c.-430G>A
  variant of: http://identifiers.org/hgnc/6950
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000396928
  ensembl transcript: ENST00000446007
  gene symbol: AP4M1
  hgvsc: ENST00000446007.1:c.10C>T
  hgvsp: ENSP00000396928.1:p.Gln4Ter
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000377625
  ensembl transcript: ENST00000394061
  gene symbol: AP4M1
  hgvsc: ENST00000394061.3:c.10C>T
  hgvsp: ENSP00000377625.3:p.Gln4Ter
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000414286
  ensembl transcript: ENST00000439416
  gene symbol: AP4M1
  hgvsc: ENST00000439416.1:c.10C>T
  hgvsp: ENSP00000414286.1:p.Gln4Ter
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000400598
  ensembl transcript: ENST00000445208
  gene symbol: AP4M1
  hgvsc: ENST00000445208.1:c.10C>T
  hgvsp: ENSP00000400598.1:p.Gln4Ter
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000412185
  ensembl transcript: ENST00000421755
  gene symbol: AP4M1
  hgvsc: ENST00000421755.1:c.10C>T
  hgvsp: ENSP00000412185.1:p.Gln4Ter
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000221838
  ensembl transcript: ENST00000478501
  gene symbol: AP4M1
  hgvsc: ENST00000478501.1:n.89C>T
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000401613
  ensembl transcript: ENST00000438383
  gene symbol: AP4M1
  hgvsc: ENST00000438383.1:c.10C>T
  hgvsp: ENSP00000401613.1:p.Gln4Ter
  variant of: http://identifiers.org/hgnc/574
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 919
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11556
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1581
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2382
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11970
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3772
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16531
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1232
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6088
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1784
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gln4Ter
num of homozygotes: 0
population: European (Finnish)
population: African
population: South Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum

7-99699349-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99699349
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99699349
    reference: chr 7
allele count: 4
allele frequency: 3.320714617785747e-5
allele num: 120456
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000401613
  ensembl transcript: ENST00000438383
  gene symbol: AP4M1
  hgvsc: ENST00000438383.1:c.12A>G
  hgvsp: ENST00000438383.1:c.12A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166508
  ensembl protein: ENSP00000307288
  ensembl transcript: ENST00000303887
  gene symbol: MCM7
  hgvsc: ENST00000303887.5:c.-432T>C
  variant of: http://identifiers.org/hgnc/6950
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000414286
  ensembl transcript: ENST00000439416
  gene symbol: AP4M1
  hgvsc: ENST00000439416.1:c.12A>G
  hgvsp: ENST00000439416.1:c.12A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000377625
  ensembl transcript: ENST00000394061
  gene symbol: AP4M1
  hgvsc: ENST00000394061.3:c.12A>G
  hgvsp: ENST00000394061.3:c.12A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000403663
  ensembl transcript: ENST00000429084
  gene symbol: AP4M1
  hgvsc: ENST00000429084.1:c.12A>G
  hgvsp: ENST00000429084.1:c.12A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000352603
  ensembl transcript: ENST00000359593
  gene symbol: AP4M1
  hgvsc: ENST00000359593.4:c.12A>G
  hgvsp: ENST00000359593.4:c.12A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000221838
  ensembl transcript: ENST00000478501
  gene symbol: AP4M1
  hgvsc: ENST00000478501.1:n.91A>G
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000400598
  ensembl transcript: ENST00000445208
  gene symbol: AP4M1
  hgvsc: ENST00000445208.1:c.12A>G
  hgvsp: ENST00000445208.1:c.12A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000396928
  ensembl transcript: ENST00000446007
  gene symbol: AP4M1
  hgvsc: ENST00000446007.1:c.12A>G
  hgvsp: ENST00000446007.1:c.12A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000412185
  ensembl transcript: ENST00000421755
  gene symbol: AP4M1
  hgvsc: ENST00000421755.1:c.12A>G
  hgvsp: ENST00000421755.1:c.12A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166508
  ensembl protein: ENSP00000344006
  ensembl transcript: ENST00000343023
  gene symbol: MCM7
  hgvsc: ENST00000343023.6:c.-432T>C
  variant of: http://identifiers.org/hgnc/6950
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1232
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11552
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2382
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3770
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 918
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1786
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11954
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1581
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16546
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6083
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Gln4Gln
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: Other
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum

7-99699349-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99699349
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99699349
    reference: chr 7
allele count: 5
allele frequency: 4.150893272232185e-5
allele num: 120456
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166508
  ensembl protein: ENSP00000307288
  ensembl transcript: ENST00000303887
  gene symbol: MCM7
  hgvsc: ENST00000303887.5:c.-432T>A
  variant of: http://identifiers.org/hgnc/6950
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000377625
  ensembl transcript: ENST00000394061
  gene symbol: AP4M1
  hgvsc: ENST00000394061.3:c.12A>T
  hgvsp: ENSP00000377625.3:p.Gln4His
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166508
  ensembl protein: ENSP00000344006
  ensembl transcript: ENST00000343023
  gene symbol: MCM7
  hgvsc: ENST00000343023.6:c.-432T>A
  variant of: http://identifiers.org/hgnc/6950
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000400598
  ensembl transcript: ENST00000445208
  gene symbol: AP4M1
  hgvsc: ENST00000445208.1:c.12A>T
  hgvsp: ENSP00000400598.1:p.Gln4His
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000396928
  ensembl transcript: ENST00000446007
  gene symbol: AP4M1
  hgvsc: ENST00000446007.1:c.12A>T
  hgvsp: ENSP00000396928.1:p.Gln4His
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000414286
  ensembl transcript: ENST00000439416
  gene symbol: AP4M1
  hgvsc: ENST00000439416.1:c.12A>T
  hgvsp: ENSP00000414286.1:p.Gln4His
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000412185
  ensembl transcript: ENST00000421755
  gene symbol: AP4M1
  hgvsc: ENST00000421755.1:c.12A>T
  hgvsp: ENSP00000412185.1:p.Gln4His
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000401613
  ensembl transcript: ENST00000438383
  gene symbol: AP4M1
  hgvsc: ENST00000438383.1:c.12A>T
  hgvsp: ENSP00000401613.1:p.Gln4His
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000221838
  ensembl transcript: ENST00000478501
  gene symbol: AP4M1
  hgvsc: ENST00000478501.1:n.91A>T
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000352603
  ensembl transcript: ENST00000359593
  gene symbol: AP4M1
  hgvsc: ENST00000359593.4:c.12A>T
  hgvsp: ENSP00000352603.4:p.Gln4His
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000403663
  ensembl transcript: ENST00000429084
  gene symbol: AP4M1
  hgvsc: ENST00000429084.1:c.12A>T
  hgvsp: ENSP00000403663.1:p.Gln4His
  variant of: http://identifiers.org/hgnc/574
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1786
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 16546
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 918
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3770
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11954
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11552
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1581
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2382
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1232
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 8.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
hgvs: p.Gln4His
num of homozygotes: 0
population: East Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: African
population: Latino
reference allele: A
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: QD

7-99699352-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99699352
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99699352
    reference: chr 7
allele count: 1
allele frequency: 8.300959590928711e-6
allele num: 120468
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000400598
  ensembl transcript: ENST00000445208
  gene symbol: AP4M1
  hgvsc: ENST00000445208.1:c.15C>T
  hgvsp: ENST00000445208.1:c.15C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000352603
  ensembl transcript: ENST00000359593
  gene symbol: AP4M1
  hgvsc: ENST00000359593.4:c.15C>T
  hgvsp: ENST00000359593.4:c.15C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166508
  ensembl protein: ENSP00000344006
  ensembl transcript: ENST00000343023
  gene symbol: MCM7
  hgvsc: ENST00000343023.6:c.-435G>A
  variant of: http://identifiers.org/hgnc/6950
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000377625
  ensembl transcript: ENST00000394061
  gene symbol: AP4M1
  hgvsc: ENST00000394061.3:c.15C>T
  hgvsp: ENST00000394061.3:c.15C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000221838
  ensembl transcript: ENST00000478501
  gene symbol: AP4M1
  hgvsc: ENST00000478501.1:n.94C>T
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000396928
  ensembl transcript: ENST00000446007
  gene symbol: AP4M1
  hgvsc: ENST00000446007.1:c.15C>T
  hgvsp: ENST00000446007.1:c.15C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000401613
  ensembl transcript: ENST00000438383
  gene symbol: AP4M1
  hgvsc: ENST00000438383.1:c.15C>T
  hgvsp: ENST00000438383.1:c.15C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000414286
  ensembl transcript: ENST00000439416
  gene symbol: AP4M1
  hgvsc: ENST00000439416.1:c.15C>T
  hgvsp: ENST00000439416.1:c.15C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000412185
  ensembl transcript: ENST00000421755
  gene symbol: AP4M1
  hgvsc: ENST00000421755.1:c.15C>T
  hgvsp: ENST00000421755.1:c.15C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000403663
  ensembl transcript: ENST00000429084
  gene symbol: AP4M1
  hgvsc: ENST00000429084.1:c.15C>T
  hgvsp: ENST00000429084.1:c.15C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166508
  ensembl protein: ENSP00000307288
  ensembl transcript: ENST00000303887
  gene symbol: MCM7
  hgvsc: ENST00000303887.5:c.-435G>A
  variant of: http://identifiers.org/hgnc/6950
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1233
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2382
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3771
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11554
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11962
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 918
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16549
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6084
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1581
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Phe5Phe
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
population: South Asian
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: DP

7-99699356-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99699356
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99699356
    reference: chr 7
allele count: 4
allele frequency: 3.320769754429076e-5
allele num: 120454
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000401613
  ensembl transcript: ENST00000438383
  gene symbol: AP4M1
  hgvsc: ENST00000438383.1:c.19A>G
  hgvsp: ENSP00000401613.1:p.Ile7Val
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000403663
  ensembl transcript: ENST00000429084
  gene symbol: AP4M1
  hgvsc: ENST00000429084.1:c.19A>G
  hgvsp: ENSP00000403663.1:p.Ile7Val
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000352603
  ensembl transcript: ENST00000359593
  gene symbol: AP4M1
  hgvsc: ENST00000359593.4:c.19A>G
  hgvsp: ENSP00000352603.4:p.Ile7Val
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000412185
  ensembl transcript: ENST00000421755
  gene symbol: AP4M1
  hgvsc: ENST00000421755.1:c.19A>G
  hgvsp: ENSP00000412185.1:p.Ile7Val
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000396928
  ensembl transcript: ENST00000446007
  gene symbol: AP4M1
  hgvsc: ENST00000446007.1:c.19A>G
  hgvsp: ENSP00000396928.1:p.Ile7Val
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000377625
  ensembl transcript: ENST00000394061
  gene symbol: AP4M1
  hgvsc: ENST00000394061.3:c.19A>G
  hgvsp: ENSP00000377625.3:p.Ile7Val
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000400598
  ensembl transcript: ENST00000445208
  gene symbol: AP4M1
  hgvsc: ENST00000445208.1:c.19A>G
  hgvsp: ENSP00000400598.1:p.Ile7Val
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166508
  ensembl protein: ENSP00000344006
  ensembl transcript: ENST00000343023
  gene symbol: MCM7
  hgvsc: ENST00000343023.6:c.-439T>C
  variant of: http://identifiers.org/hgnc/6950
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000414286
  ensembl transcript: ENST00000439416
  gene symbol: AP4M1
  hgvsc: ENST00000439416.1:c.19A>G
  hgvsp: ENSP00000414286.1:p.Ile7Val
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000221838
  ensembl transcript: ENST00000478501
  gene symbol: AP4M1
  hgvsc: ENST00000478501.1:n.98A>G
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166508
  ensembl protein: ENSP00000307288
  ensembl transcript: ENST00000303887
  gene symbol: MCM7
  hgvsc: ENST00000303887.5:c.-439T>C
  variant of: http://identifiers.org/hgnc/6950
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 644
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11921
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 918
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2382
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1580
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3770
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6085
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1233
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1785
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16556
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ile7Val
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Other
population: East Asian
population: Latino
population: African
reference allele: A
site quality: DP
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff

7-99699361-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99699361
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99699361
    reference: chr 7
allele count: 1
allele frequency: 8.301510874979247e-6
allele num: 120460
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000412185
  ensembl transcript: ENST00000421755
  gene symbol: AP4M1
  hgvsc: ENST00000421755.1:c.24G>C
  hgvsp: ENST00000421755.1:c.24G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166508
  ensembl protein: ENSP00000307288
  ensembl transcript: ENST00000303887
  gene symbol: MCM7
  hgvsc: ENST00000303887.5:c.-444C>G
  variant of: http://identifiers.org/hgnc/6950
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000221838
  ensembl transcript: ENST00000478501
  gene symbol: AP4M1
  hgvsc: ENST00000478501.1:n.103G>C
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000377625
  ensembl transcript: ENST00000394061
  gene symbol: AP4M1
  hgvsc: ENST00000394061.3:c.24G>C
  hgvsp: ENST00000394061.3:c.24G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000352603
  ensembl transcript: ENST00000359593
  gene symbol: AP4M1
  hgvsc: ENST00000359593.4:c.24G>C
  hgvsp: ENST00000359593.4:c.24G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000396928
  ensembl transcript: ENST00000446007
  gene symbol: AP4M1
  hgvsc: ENST00000446007.1:c.24G>C
  hgvsp: ENST00000446007.1:c.24G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000400598
  ensembl transcript: ENST00000445208
  gene symbol: AP4M1
  hgvsc: ENST00000445208.1:c.24G>C
  hgvsp: ENST00000445208.1:c.24G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166508
  ensembl protein: ENSP00000344006
  ensembl transcript: ENST00000343023
  gene symbol: MCM7
  hgvsc: ENST00000343023.6:c.-444C>G
  variant of: http://identifiers.org/hgnc/6950
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000414286
  ensembl transcript: ENST00000439416
  gene symbol: AP4M1
  hgvsc: ENST00000439416.1:c.24G>C
  hgvsp: ENST00000439416.1:c.24G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000401613
  ensembl transcript: ENST00000438383
  gene symbol: AP4M1
  hgvsc: ENST00000438383.1:c.24G>C
  hgvsp: ENST00000438383.1:c.24G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000403663
  ensembl transcript: ENST00000429084
  gene symbol: AP4M1
  hgvsc: ENST00000429084.1:c.24G>C
  hgvsp: ENST00000429084.1:c.24G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/574
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11884
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6083
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 644
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1233
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2382
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1581
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16557
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3770
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1784
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 919
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu8Leu
num of homozygotes: 0
population: Latino
population: Other
population: South Asian
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD

7-99699363-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99699363
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99699363
    reference: chr 7
allele count: 4
allele frequency: 3.320549218840796e-5
allele num: 120462
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000412185
  ensembl transcript: ENST00000421755
  gene symbol: AP4M1
  hgvsc: ENST00000421755.1:c.26C>T
  hgvsp: ENSP00000412185.1:p.Ser9Phe
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000352603
  ensembl transcript: ENST00000359593
  gene symbol: AP4M1
  hgvsc: ENST00000359593.4:c.26C>T
  hgvsp: ENSP00000352603.4:p.Ser9Phe
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000403663
  ensembl transcript: ENST00000429084
  gene symbol: AP4M1
  hgvsc: ENST00000429084.1:c.26C>T
  hgvsp: ENSP00000403663.1:p.Ser9Phe
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000401613
  ensembl transcript: ENST00000438383
  gene symbol: AP4M1
  hgvsc: ENST00000438383.1:c.26C>T
  hgvsp: ENSP00000401613.1:p.Ser9Phe
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000377625
  ensembl transcript: ENST00000394061
  gene symbol: AP4M1
  hgvsc: ENST00000394061.3:c.26C>T
  hgvsp: ENSP00000377625.3:p.Ser9Phe
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000396928
  ensembl transcript: ENST00000446007
  gene symbol: AP4M1
  hgvsc: ENST00000446007.1:c.26C>T
  hgvsp: ENSP00000396928.1:p.Ser9Phe
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166508
  ensembl protein: ENSP00000344006
  ensembl transcript: ENST00000343023
  gene symbol: MCM7
  hgvsc: ENST00000343023.6:c.-446G>A
  variant of: http://identifiers.org/hgnc/6950
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000400598
  ensembl transcript: ENST00000445208
  gene symbol: AP4M1
  hgvsc: ENST00000445208.1:c.26C>T
  hgvsp: ENSP00000400598.1:p.Ser9Phe
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000221838
  ensembl transcript: ENST00000478501
  gene symbol: AP4M1
  hgvsc: ENST00000478501.1:n.105C>T
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166508
  ensembl protein: ENSP00000307288
  ensembl transcript: ENST00000303887
  gene symbol: MCM7
  hgvsc: ENST00000303887.5:c.-446G>A
  variant of: http://identifiers.org/hgnc/6950
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000414286
  ensembl transcript: ENST00000439416
  gene symbol: AP4M1
  hgvsc: ENST00000439416.1:c.26C>T
  hgvsp: ENSP00000414286.1:p.Ser9Phe
  variant of: http://identifiers.org/hgnc/574
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6081
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11870
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11551
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1233
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3770
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 644
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16568
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1786
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2382
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1581
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser9Phe
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: African
population: Other
reference allele: C
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: MQ

7-99699364-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99699364
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99699364
    reference: chr 7
allele count: 2
allele frequency: 1.66021948101539e-5
allele num: 120466
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000396928
  ensembl transcript: ENST00000446007
  gene symbol: AP4M1
  hgvsc: ENST00000446007.1:c.27C>T
  hgvsp: ENST00000446007.1:c.27C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000403663
  ensembl transcript: ENST00000429084
  gene symbol: AP4M1
  hgvsc: ENST00000429084.1:c.27C>T
  hgvsp: ENST00000429084.1:c.27C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000400598
  ensembl transcript: ENST00000445208
  gene symbol: AP4M1
  hgvsc: ENST00000445208.1:c.27C>T
  hgvsp: ENST00000445208.1:c.27C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166508
  ensembl protein: ENSP00000307288
  ensembl transcript: ENST00000303887
  gene symbol: MCM7
  hgvsc: ENST00000303887.5:c.-447G>A
  variant of: http://identifiers.org/hgnc/6950
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000221838
  ensembl transcript: ENST00000478501
  gene symbol: AP4M1
  hgvsc: ENST00000478501.1:n.106C>T
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000377625
  ensembl transcript: ENST00000394061
  gene symbol: AP4M1
  hgvsc: ENST00000394061.3:c.27C>T
  hgvsp: ENST00000394061.3:c.27C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166508
  ensembl protein: ENSP00000344006
  ensembl transcript: ENST00000343023
  gene symbol: MCM7
  hgvsc: ENST00000343023.6:c.-447G>A
  variant of: http://identifiers.org/hgnc/6950
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000414286
  ensembl transcript: ENST00000439416
  gene symbol: AP4M1
  hgvsc: ENST00000439416.1:c.27C>T
  hgvsp: ENST00000439416.1:c.27C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000401613
  ensembl transcript: ENST00000438383
  gene symbol: AP4M1
  hgvsc: ENST00000438383.1:c.27C>T
  hgvsp: ENST00000438383.1:c.27C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000412185
  ensembl transcript: ENST00000421755
  gene symbol: AP4M1
  hgvsc: ENST00000421755.1:c.27C>T
  hgvsp: ENST00000421755.1:c.27C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000352603
  ensembl transcript: ENST00000359593
  gene symbol: AP4M1
  hgvsc: ENST00000359593.4:c.27C>T
  hgvsp: ENST00000359593.4:c.27C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/574
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1581
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3770
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11853
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 644
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16575
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11554
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2383
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6082
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 919
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1784
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1233
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser9Ser
num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff

http://identifiers.org/exac.variant/7-99699367-CA-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99699367
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99699366
    reference: chr 7
allele count: 4
allele frequency: 3.320714617785747e-5
allele num: 120456
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166508
  ensembl protein: ENSP00000307288
  ensembl transcript: ENST00000303887
  gene symbol: MCM7
  hgvsc: ENST00000303887.5:c.-451delT
  variant of: http://identifiers.org/hgnc/6950
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000401613
  ensembl transcript: ENST00000438383
  gene symbol: AP4M1
  hgvsc: ENST00000438383.1:c.32delA
  hgvsp: ENSP00000401613.1:p.Lys11ArgfsTer27
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000221838
  ensembl transcript: ENST00000478501
  gene symbol: AP4M1
  hgvsc: ENST00000478501.1:n.111delA
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166508
  ensembl protein: ENSP00000344006
  ensembl transcript: ENST00000343023
  gene symbol: MCM7
  hgvsc: ENST00000343023.6:c.-451delT
  variant of: http://identifiers.org/hgnc/6950
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000412185
  ensembl transcript: ENST00000421755
  gene symbol: AP4M1
  hgvsc: ENST00000421755.1:c.32delA
  hgvsp: ENSP00000412185.1:p.Lys11ArgfsTer27
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000396928
  ensembl transcript: ENST00000446007
  gene symbol: AP4M1
  hgvsc: ENST00000446007.1:c.32delA
  hgvsp: ENSP00000396928.1:p.Lys11ArgfsTer27
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000352603
  ensembl transcript: ENST00000359593
  gene symbol: AP4M1
  hgvsc: ENST00000359593.4:c.32delA
  hgvsp: ENSP00000352603.4:p.Lys11ArgfsTer27
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000414286
  ensembl transcript: ENST00000439416
  gene symbol: AP4M1
  hgvsc: ENST00000439416.1:c.32delA
  hgvsp: ENSP00000414286.1:p.Lys11ArgfsTer27
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000377625
  ensembl transcript: ENST00000394061
  gene symbol: AP4M1
  hgvsc: ENST00000394061.3:c.32delA
  hgvsp: ENSP00000377625.3:p.Lys11ArgfsTer27
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000403663
  ensembl transcript: ENST00000429084
  gene symbol: AP4M1
  hgvsc: ENST00000429084.1:c.32delA
  hgvsp: ENSP00000403663.1:p.Lys11ArgfsTer27
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000400598
  ensembl transcript: ENST00000445208
  gene symbol: AP4M1
  hgvsc: ENST00000445208.1:c.32delA
  hgvsp: ENSP00000400598.1:p.Lys11ArgfsTer27
  variant of: http://identifiers.org/hgnc/574
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11548
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11822
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3771
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1784
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16559
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6083
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1581
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1233
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 920
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 644
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2383
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Lys11ArgfsTer27
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
reference allele: CA
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: DP

7-99699370-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99699370
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99699370
    reference: chr 7
allele count: 1
allele frequency: 8.301786544464368e-6
allele num: 120456
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166508
  ensembl protein: ENSP00000344006
  ensembl transcript: ENST00000343023
  gene symbol: MCM7
  hgvsc: ENST00000343023.6:c.-453C>T
  variant of: http://identifiers.org/hgnc/6950
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000352603
  ensembl transcript: ENST00000359593
  gene symbol: AP4M1
  hgvsc: ENST00000359593.4:c.33G>A
  hgvsp: ENST00000359593.4:c.33G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000396928
  ensembl transcript: ENST00000446007
  gene symbol: AP4M1
  hgvsc: ENST00000446007.1:c.33G>A
  hgvsp: ENST00000446007.1:c.33G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000403663
  ensembl transcript: ENST00000429084
  gene symbol: AP4M1
  hgvsc: ENST00000429084.1:c.33G>A
  hgvsp: ENST00000429084.1:c.33G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000414286
  ensembl transcript: ENST00000439416
  gene symbol: AP4M1
  hgvsc: ENST00000439416.1:c.33G>A
  hgvsp: ENST00000439416.1:c.33G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000400598
  ensembl transcript: ENST00000445208
  gene symbol: AP4M1
  hgvsc: ENST00000445208.1:c.33G>A
  hgvsp: ENST00000445208.1:c.33G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000401613
  ensembl transcript: ENST00000438383
  gene symbol: AP4M1
  hgvsc: ENST00000438383.1:c.33G>A
  hgvsp: ENST00000438383.1:c.33G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000412185
  ensembl transcript: ENST00000421755
  gene symbol: AP4M1
  hgvsc: ENST00000421755.1:c.33G>A
  hgvsp: ENST00000421755.1:c.33G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000377625
  ensembl transcript: ENST00000394061
  gene symbol: AP4M1
  hgvsc: ENST00000394061.3:c.33G>A
  hgvsp: ENST00000394061.3:c.33G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000221838
  ensembl transcript: ENST00000478501
  gene symbol: AP4M1
  hgvsc: ENST00000478501.1:n.112G>A
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166508
  ensembl protein: ENSP00000307288
  ensembl transcript: ENST00000303887
  gene symbol: MCM7
  hgvsc: ENST00000303887.5:c.-453C>T
  variant of: http://identifiers.org/hgnc/6950
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11809
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16550
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 644
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6084
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 920
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3772
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11550
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1783
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1580
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1234
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Lys11Lys
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: African
population: Other
population: East Asian
reference allele: G
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD

7-99699378-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99699378
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99699378
    reference: chr 7
allele count: 1
allele frequency: 8.307855908547122e-6
allele num: 120368
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166508
  ensembl protein: ENSP00000307288
  ensembl transcript: ENST00000303887
  gene symbol: MCM7
  hgvsc: ENST00000303887.5:c.-461G>A
  variant of: http://identifiers.org/hgnc/6950
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000352603
  ensembl transcript: ENST00000359593
  gene symbol: AP4M1
  hgvsc: ENST00000359593.4:c.41C>T
  hgvsp: ENSP00000352603.4:p.Pro14Leu
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000403663
  ensembl transcript: ENST00000429084
  gene symbol: AP4M1
  hgvsc: ENST00000429084.1:c.41C>T
  hgvsp: ENSP00000403663.1:p.Pro14Leu
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000400598
  ensembl transcript: ENST00000445208
  gene symbol: AP4M1
  hgvsc: ENST00000445208.1:c.41C>T
  hgvsp: ENSP00000400598.1:p.Pro14Leu
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000377625
  ensembl transcript: ENST00000394061
  gene symbol: AP4M1
  hgvsc: ENST00000394061.3:c.41C>T
  hgvsp: ENSP00000377625.3:p.Pro14Leu
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000401613
  ensembl transcript: ENST00000438383
  gene symbol: AP4M1
  hgvsc: ENST00000438383.1:c.41C>T
  hgvsp: ENSP00000401613.1:p.Pro14Leu
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000414286
  ensembl transcript: ENST00000439416
  gene symbol: AP4M1
  hgvsc: ENST00000439416.1:c.41C>T
  hgvsp: ENSP00000414286.1:p.Pro14Leu
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000396928
  ensembl transcript: ENST00000446007
  gene symbol: AP4M1
  hgvsc: ENST00000446007.1:c.41C>T
  hgvsp: ENSP00000396928.1:p.Pro14Leu
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166508
  ensembl protein: ENSP00000344006
  ensembl transcript: ENST00000343023
  gene symbol: MCM7
  hgvsc: ENST00000343023.6:c.-461G>A
  variant of: http://identifiers.org/hgnc/6950
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000221838
  ensembl transcript: ENST00000478501
  gene symbol: AP4M1
  hgvsc: ENST00000478501.1:n.120C>T
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000412185
  ensembl transcript: ENST00000421755
  gene symbol: AP4M1
  hgvsc: ENST00000421755.1:c.41C>T
  hgvsp: ENSP00000412185.1:p.Pro14Leu
  variant of: http://identifiers.org/hgnc/574
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11632
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16504
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1581
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3769
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 645
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11532
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6079
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 920
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1784
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2383
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1233
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro14Leu
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: South Asian
population: African
reference allele: C
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS

http://identifiers.org/exac.variant/7-99699382-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99699382
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99699382
    reference: chr 7
allele count: 1
allele frequency: 8.309650828472188e-6
allele num: 120342
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000221838
  ensembl transcript: ENST00000478501
  gene symbol: AP4M1
  hgvsc: ENST00000478501.1:n.124C>A
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166508
  ensembl protein: ENSP00000307288
  ensembl transcript: ENST00000303887
  gene symbol: MCM7
  hgvsc: ENST00000303887.5:c.-465G>T
  variant of: http://identifiers.org/hgnc/6950
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000396928
  ensembl transcript: ENST00000446007
  gene symbol: AP4M1
  hgvsc: ENST00000446007.1:c.45C>A
  hgvsp: ENST00000446007.1:c.45C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166508
  ensembl protein: ENSP00000344006
  ensembl transcript: ENST00000343023
  gene symbol: MCM7
  hgvsc: ENST00000343023.6:c.-465G>T
  variant of: http://identifiers.org/hgnc/6950
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000352603
  ensembl transcript: ENST00000359593
  gene symbol: AP4M1
  hgvsc: ENST00000359593.4:c.45C>A
  hgvsp: ENST00000359593.4:c.45C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000377625
  ensembl transcript: ENST00000394061
  gene symbol: AP4M1
  hgvsc: ENST00000394061.3:c.45C>A
  hgvsp: ENST00000394061.3:c.45C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000403663
  ensembl transcript: ENST00000429084
  gene symbol: AP4M1
  hgvsc: ENST00000429084.1:c.45C>A
  hgvsp: ENST00000429084.1:c.45C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000400598
  ensembl transcript: ENST00000445208
  gene symbol: AP4M1
  hgvsc: ENST00000445208.1:c.45C>A
  hgvsp: ENST00000445208.1:c.45C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000412185
  ensembl transcript: ENST00000421755
  gene symbol: AP4M1
  hgvsc: ENST00000421755.1:c.45C>A
  hgvsp: ENST00000421755.1:c.45C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000414286
  ensembl transcript: ENST00000439416
  gene symbol: AP4M1
  hgvsc: ENST00000439416.1:c.45C>A
  hgvsp: ENST00000439416.1:c.45C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000401613
  ensembl transcript: ENST00000438383
  gene symbol: AP4M1
  hgvsc: ENST00000438383.1:c.45C>A
  hgvsp: ENST00000438383.1:c.45C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/574
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2383
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1783
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3769
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6079
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1579
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1234
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11526
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11607
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 920
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 645
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16478
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu15Leu
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: South Asian
population: European (Finnish)
population: Latino
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD

7-99699382-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99699382
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99699382
    reference: chr 7
allele count: 2
allele frequency: 1.661930165694438e-5
allele num: 120342
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166508
  ensembl protein: ENSP00000344006
  ensembl transcript: ENST00000343023
  gene symbol: MCM7
  hgvsc: ENST00000343023.6:c.-465G>C
  variant of: http://identifiers.org/hgnc/6950
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000400598
  ensembl transcript: ENST00000445208
  gene symbol: AP4M1
  hgvsc: ENST00000445208.1:c.45C>G
  hgvsp: ENST00000445208.1:c.45C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000412185
  ensembl transcript: ENST00000421755
  gene symbol: AP4M1
  hgvsc: ENST00000421755.1:c.45C>G
  hgvsp: ENST00000421755.1:c.45C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000414286
  ensembl transcript: ENST00000439416
  gene symbol: AP4M1
  hgvsc: ENST00000439416.1:c.45C>G
  hgvsp: ENST00000439416.1:c.45C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000352603
  ensembl transcript: ENST00000359593
  gene symbol: AP4M1
  hgvsc: ENST00000359593.4:c.45C>G
  hgvsp: ENST00000359593.4:c.45C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000401613
  ensembl transcript: ENST00000438383
  gene symbol: AP4M1
  hgvsc: ENST00000438383.1:c.45C>G
  hgvsp: ENST00000438383.1:c.45C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000377625
  ensembl transcript: ENST00000394061
  gene symbol: AP4M1
  hgvsc: ENST00000394061.3:c.45C>G
  hgvsp: ENST00000394061.3:c.45C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166508
  ensembl protein: ENSP00000307288
  ensembl transcript: ENST00000303887
  gene symbol: MCM7
  hgvsc: ENST00000303887.5:c.-465G>C
  variant of: http://identifiers.org/hgnc/6950
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000396928
  ensembl transcript: ENST00000446007
  gene symbol: AP4M1
  hgvsc: ENST00000446007.1:c.45C>G
  hgvsp: ENST00000446007.1:c.45C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000403663
  ensembl transcript: ENST00000429084
  gene symbol: AP4M1
  hgvsc: ENST00000429084.1:c.45C>G
  hgvsp: ENST00000429084.1:c.45C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000221838
  ensembl transcript: ENST00000478501
  gene symbol: AP4M1
  hgvsc: ENST00000478501.1:n.124C>G
  variant of: http://identifiers.org/hgnc/574
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1579
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11526
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1783
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 920
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16478
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2383
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3769
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1234
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11607
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6079
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Leu15Leu
num of homozygotes: 0
population: Other
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
population: European (Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD

7-99699387-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99699387
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99699387
    reference: chr 7
allele count: 1
allele frequency: 8.314763694415805e-6
allele num: 120268
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000352603
  ensembl transcript: ENST00000359593
  gene symbol: AP4M1
  hgvsc: ENST00000359593.4:c.50A>G
  hgvsp: ENSP00000352603.4:p.Tyr17Cys
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000412185
  ensembl transcript: ENST00000421755
  gene symbol: AP4M1
  hgvsc: ENST00000421755.1:c.50A>G
  hgvsp: ENSP00000412185.1:p.Tyr17Cys
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166508
  ensembl protein: ENSP00000344006
  ensembl transcript: ENST00000343023
  gene symbol: MCM7
  hgvsc: ENST00000343023.6:c.-470T>C
  variant of: http://identifiers.org/hgnc/6950
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000400598
  ensembl transcript: ENST00000445208
  gene symbol: AP4M1
  hgvsc: ENST00000445208.1:c.50A>G
  hgvsp: ENSP00000400598.1:p.Tyr17Cys
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000401613
  ensembl transcript: ENST00000438383
  gene symbol: AP4M1
  hgvsc: ENST00000438383.1:c.50A>G
  hgvsp: ENSP00000401613.1:p.Tyr17Cys
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000414286
  ensembl transcript: ENST00000439416
  gene symbol: AP4M1
  hgvsc: ENST00000439416.1:c.50A>G
  hgvsp: ENSP00000414286.1:p.Tyr17Cys
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166508
  ensembl protein: ENSP00000307288
  ensembl transcript: ENST00000303887
  gene symbol: MCM7
  hgvsc: ENST00000303887.5:c.-470T>C
  variant of: http://identifiers.org/hgnc/6950
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000377625
  ensembl transcript: ENST00000394061
  gene symbol: AP4M1
  hgvsc: ENST00000394061.3:c.50A>G
  hgvsp: ENSP00000377625.3:p.Tyr17Cys
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000403663
  ensembl transcript: ENST00000429084
  gene symbol: AP4M1
  hgvsc: ENST00000429084.1:c.50A>G
  hgvsp: ENSP00000403663.1:p.Tyr17Cys
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000396928
  ensembl transcript: ENST00000446007
  gene symbol: AP4M1
  hgvsc: ENST00000446007.1:c.50A>G
  hgvsp: ENSP00000396928.1:p.Tyr17Cys
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000221838
  ensembl transcript: ENST00000478501
  gene symbol: AP4M1
  hgvsc: ENST00000478501.1:n.129A>G
  variant of: http://identifiers.org/hgnc/574
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11507
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1233
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3768
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16426
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6080
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1579
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 644
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 920
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2383
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1783
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Tyr17Cys
num of homozygotes: 0
population: European (Finnish)
population: Other
population: Latino
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: MQ

7-99699394-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99699394
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99699394
    reference: chr 7
allele count: 5
allele frequency: 4.164584374479427e-5
allele num: 120060
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000352603
  ensembl transcript: ENST00000359593
  gene symbol: AP4M1
  hgvsc: ENST00000359593.4:c.57C>T
  hgvsp: ENST00000359593.4:c.57C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166508
  ensembl protein: ENSP00000307288
  ensembl transcript: ENST00000303887
  gene symbol: MCM7
  hgvsc: ENST00000303887.5:c.-477G>A
  variant of: http://identifiers.org/hgnc/6950
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000414286
  ensembl transcript: ENST00000439416
  gene symbol: AP4M1
  hgvsc: ENST00000439416.1:c.57C>T
  hgvsp: ENST00000439416.1:c.57C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000401613
  ensembl transcript: ENST00000438383
  gene symbol: AP4M1
  hgvsc: ENST00000438383.1:c.57C>T
  hgvsp: ENST00000438383.1:c.57C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000396928
  ensembl transcript: ENST00000446007
  gene symbol: AP4M1
  hgvsc: ENST00000446007.1:c.57C>T
  hgvsp: ENST00000446007.1:c.57C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000412185
  ensembl transcript: ENST00000421755
  gene symbol: AP4M1
  hgvsc: ENST00000421755.1:c.57C>T
  hgvsp: ENST00000421755.1:c.57C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000221838
  ensembl transcript: ENST00000463195
  gene symbol: AP4M1
  hgvsc: ENST00000463195.1:n.3C>T
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000400598
  ensembl transcript: ENST00000445208
  gene symbol: AP4M1
  hgvsc: ENST00000445208.1:c.57C>T
  hgvsp: ENST00000445208.1:c.57C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000221838
  ensembl transcript: ENST00000478501
  gene symbol: AP4M1
  hgvsc: ENST00000478501.1:n.136C>T
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000403663
  ensembl transcript: ENST00000429084
  gene symbol: AP4M1
  hgvsc: ENST00000429084.1:c.57C>T
  hgvsp: ENST00000429084.1:c.57C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000377625
  ensembl transcript: ENST00000394061
  gene symbol: AP4M1
  hgvsc: ENST00000394061.3:c.57C>T
  hgvsp: ENST00000394061.3:c.57C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166508
  ensembl protein: ENSP00000344006
  ensembl transcript: ENST00000343023
  gene symbol: MCM7
  hgvsc: ENST00000343023.6:c.-477G>A
  variant of: http://identifiers.org/hgnc/6950
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 455
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3767
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 644
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1578
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6073
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1232
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2385
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11489
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11281
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16294
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.57C>T
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
reference allele: C
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum

7-99699400-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99699400
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99699400
    reference: chr 7
allele count: 1
allele frequency: 8.355056480181806e-6
allele num: 119688
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000221838
  ensembl transcript: ENST00000463195
  gene symbol: AP4M1
  hgvsc: ENST00000463195.1:n.9C>T
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000396928
  ensembl transcript: ENST00000446007
  gene symbol: AP4M1
  hgvsc: ENST00000446007.1:c.58+5C>T
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166508
  ensembl protein: ENSP00000344006
  ensembl transcript: ENST00000343023
  gene symbol: MCM7
  hgvsc: ENST00000343023.6:c.-483G>A
  variant of: http://identifiers.org/hgnc/6950
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000400598
  ensembl transcript: ENST00000445208
  gene symbol: AP4M1
  hgvsc: ENST00000445208.1:c.58+5C>T
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166508
  ensembl protein: ENSP00000307288
  ensembl transcript: ENST00000303887
  gene symbol: MCM7
  hgvsc: ENST00000303887.5:c.-483G>A
  variant of: http://identifiers.org/hgnc/6950
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000221838
  ensembl transcript: ENST00000478501
  gene symbol: AP4M1
  hgvsc: ENST00000478501.1:n.137+5C>T
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000412185
  ensembl transcript: ENST00000421755
  gene symbol: AP4M1
  hgvsc: ENST00000421755.1:c.58+5C>T
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000414286
  ensembl transcript: ENST00000439416
  gene symbol: AP4M1
  hgvsc: ENST00000439416.1:c.58+5C>T
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000352603
  ensembl transcript: ENST00000359593
  gene symbol: AP4M1
  hgvsc: ENST00000359593.4:c.58+5C>T
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000403663
  ensembl transcript: ENST00000429084
  gene symbol: AP4M1
  hgvsc: ENST00000429084.1:c.58+5C>T
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000377625
  ensembl transcript: ENST00000394061
  gene symbol: AP4M1
  hgvsc: ENST00000394061.3:c.58+5C>T
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000401613
  ensembl transcript: ENST00000438383
  gene symbol: AP4M1
  hgvsc: ENST00000438383.1:c.58+5C>T
  variant of: http://identifiers.org/hgnc/574
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 977
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6032
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1574
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 920
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11063
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 644
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 535
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1231
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2374
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16161
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11435
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3740
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.58+5C>T
num of homozygotes: 0
population: East Asian
population: Other
population: European (Finnish)
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum

7-99699403-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99699403
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99699403
    reference: chr 7
allele count: 5
allele frequency: 4.185361280385723e-5
allele num: 119464
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000401613
  ensembl transcript: ENST00000438383
  gene symbol: AP4M1
  hgvsc: ENST00000438383.1:c.58+8A>G
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000400598
  ensembl transcript: ENST00000445208
  gene symbol: AP4M1
  hgvsc: ENST00000445208.1:c.58+8A>G
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000414286
  ensembl transcript: ENST00000439416
  gene symbol: AP4M1
  hgvsc: ENST00000439416.1:c.58+8A>G
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166508
  ensembl protein: ENSP00000344006
  ensembl transcript: ENST00000343023
  gene symbol: MCM7
  hgvsc: ENST00000343023.6:c.-486T>C
  variant of: http://identifiers.org/hgnc/6950
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166508
  ensembl protein: ENSP00000307288
  ensembl transcript: ENST00000303887
  gene symbol: MCM7
  hgvsc: ENST00000303887.5:c.-486T>C
  variant of: http://identifiers.org/hgnc/6950
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000403663
  ensembl transcript: ENST00000429084
  gene symbol: AP4M1
  hgvsc: ENST00000429084.1:c.58+8A>G
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000377625
  ensembl transcript: ENST00000394061
  gene symbol: AP4M1
  hgvsc: ENST00000394061.3:c.58+8A>G
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000396928
  ensembl transcript: ENST00000446007
  gene symbol: AP4M1
  hgvsc: ENST00000446007.1:c.58+8A>G
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000352603
  ensembl transcript: ENST00000359593
  gene symbol: AP4M1
  hgvsc: ENST00000359593.4:c.58+8A>G
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000221838
  ensembl transcript: ENST00000478501
  gene symbol: AP4M1
  hgvsc: ENST00000478501.1:n.137+8A>G
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000412185
  ensembl transcript: ENST00000421755
  gene symbol: AP4M1
  hgvsc: ENST00000421755.1:c.58+8A>G
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000221838
  ensembl transcript: ENST00000463195
  gene symbol: AP4M1
  hgvsc: ENST00000463195.1:n.12A>G
  variant of: http://identifiers.org/hgnc/574
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 578
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3723
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16054
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10916
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11393
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2372
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 918
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6006
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.58+8A>G
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
population: East Asian
population: Other
reference allele: A
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/7-99699407-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99699407
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99699407
    reference: chr 7
allele count: 2
allele frequency: 1.677767897589047e-5
allele num: 119206
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000352603
  ensembl transcript: ENST00000359593
  gene symbol: AP4M1
  hgvsc: ENST00000359593.4:c.58+12C>A
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000221838
  ensembl transcript: ENST00000478501
  gene symbol: AP4M1
  hgvsc: ENST00000478501.1:n.137+12C>A
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000377625
  ensembl transcript: ENST00000394061
  gene symbol: AP4M1
  hgvsc: ENST00000394061.3:c.58+12C>A
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000412185
  ensembl transcript: ENST00000421755
  gene symbol: AP4M1
  hgvsc: ENST00000421755.1:c.58+12C>A
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000401613
  ensembl transcript: ENST00000438383
  gene symbol: AP4M1
  hgvsc: ENST00000438383.1:c.58+12C>A
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000221838
  ensembl transcript: ENST00000463195
  gene symbol: AP4M1
  hgvsc: ENST00000463195.1:n.16C>A
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000403663
  ensembl transcript: ENST00000429084
  gene symbol: AP4M1
  hgvsc: ENST00000429084.1:c.58+12C>A
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166508
  ensembl protein: ENSP00000344006
  ensembl transcript: ENST00000343023
  gene symbol: MCM7
  hgvsc: ENST00000343023.6:c.-490G>T
  variant of: http://identifiers.org/hgnc/6950
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166508
  ensembl protein: ENSP00000307288
  ensembl transcript: ENST00000303887
  gene symbol: MCM7
  hgvsc: ENST00000303887.5:c.-490G>T
  variant of: http://identifiers.org/hgnc/6950
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000400598
  ensembl transcript: ENST00000445208
  gene symbol: AP4M1
  hgvsc: ENST00000445208.1:c.58+12C>A
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000396928
  ensembl transcript: ENST00000446007
  gene symbol: AP4M1
  hgvsc: ENST00000446007.1:c.58+12C>A
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000414286
  ensembl transcript: ENST00000439416
  gene symbol: AP4M1
  hgvsc: ENST00000439416.1:c.58+12C>A
  variant of: http://identifiers.org/hgnc/574
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1237
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1295
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10664
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1581
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2358
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 930
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11303
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 510
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 645
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15926
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3695
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5961
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: VQSLOD

7-99699407-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99699407
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99699407
    reference: chr 7
allele count: 411
allele frequency: 3.447813029545493e-3
allele num: 119206
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000221838
  ensembl transcript: ENST00000478501
  gene symbol: AP4M1
  hgvsc: ENST00000478501.1:n.137+12C>T
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000414286
  ensembl transcript: ENST00000439416
  gene symbol: AP4M1
  hgvsc: ENST00000439416.1:c.58+12C>T
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166508
  ensembl protein: ENSP00000344006
  ensembl transcript: ENST00000343023
  gene symbol: MCM7
  hgvsc: ENST00000343023.6:c.-490G>A
  variant of: http://identifiers.org/hgnc/6950
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000403663
  ensembl transcript: ENST00000429084
  gene symbol: AP4M1
  hgvsc: ENST00000429084.1:c.58+12C>T
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000412185
  ensembl transcript: ENST00000421755
  gene symbol: AP4M1
  hgvsc: ENST00000421755.1:c.58+12C>T
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000401613
  ensembl transcript: ENST00000438383
  gene symbol: AP4M1
  hgvsc: ENST00000438383.1:c.58+12C>T
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000221838
  ensembl transcript: ENST00000463195
  gene symbol: AP4M1
  hgvsc: ENST00000463195.1:n.16C>T
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000377625
  ensembl transcript: ENST00000394061
  gene symbol: AP4M1
  hgvsc: ENST00000394061.3:c.58+12C>T
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166508
  ensembl protein: ENSP00000307288
  ensembl transcript: ENST00000303887
  gene symbol: MCM7
  hgvsc: ENST00000303887.5:c.-490G>A
  variant of: http://identifiers.org/hgnc/6950
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000352603
  ensembl transcript: ENST00000359593
  gene symbol: AP4M1
  hgvsc: ENST00000359593.4:c.58+12C>T
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000400598
  ensembl transcript: ENST00000445208
  gene symbol: AP4M1
  hgvsc: ENST00000445208.1:c.58+12C>T
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000396928
  ensembl transcript: ENST00000446007
  gene symbol: AP4M1
  hgvsc: ENST00000446007.1:c.58+12C>T
  variant of: http://identifiers.org/hgnc/574
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2358
  bin: 4.75e1
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 1295
  bin: 1.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 1581
  bin: 5.25e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 930
  bin: 6.25e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 10664
  bin: 2.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 7.5e0
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 11303
  bin: 3.25e1
  variant carriers: 30
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 7.25e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 3695
  bin: 4.25e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 510
  bin: 1.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 8.25e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 9.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 15926
  bin: 2.75e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 8.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 1237
  bin: 5.75e1
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 1821
  bin: 9.75e1
  variant carriers: 58
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 7.75e1
  variant carriers: 21
genotype quality: GenotypeQuality
num of homozygotes: 5
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
population: Other
reference allele: C
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: DP

7-99699414-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99699414
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99699414
    reference: chr 7
allele count: 1
allele frequency: 8.421761832575375e-6
allele num: 118740
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166508
  ensembl protein: ENSP00000344006
  ensembl transcript: ENST00000343023
  gene symbol: MCM7
  hgvsc: ENST00000343023.6:c.-497C>G
  variant of: http://identifiers.org/hgnc/6950
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166508
  ensembl protein: ENSP00000307288
  ensembl transcript: ENST00000303887
  gene symbol: MCM7
  hgvsc: ENST00000303887.5:c.-497C>G
  variant of: http://identifiers.org/hgnc/6950
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000221838
  ensembl transcript: ENST00000478501
  gene symbol: AP4M1
  hgvsc: ENST00000478501.1:n.137+19G>C
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000400598
  ensembl transcript: ENST00000445208
  gene symbol: AP4M1
  hgvsc: ENST00000445208.1:c.58+19G>C
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000221838
  ensembl transcript: ENST00000463195
  gene symbol: AP4M1
  hgvsc: ENST00000463195.1:n.23G>C
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000396928
  ensembl transcript: ENST00000446007
  gene symbol: AP4M1
  hgvsc: ENST00000446007.1:c.58+19G>C
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000352603
  ensembl transcript: ENST00000359593
  gene symbol: AP4M1
  hgvsc: ENST00000359593.4:c.58+19G>C
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000377625
  ensembl transcript: ENST00000394061
  gene symbol: AP4M1
  hgvsc: ENST00000394061.3:c.58+19G>C
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000412185
  ensembl transcript: ENST00000421755
  gene symbol: AP4M1
  hgvsc: ENST00000421755.1:c.58+19G>C
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000414286
  ensembl transcript: ENST00000439416
  gene symbol: AP4M1
  hgvsc: ENST00000439416.1:c.58+19G>C
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000401613
  ensembl transcript: ENST00000438383
  gene symbol: AP4M1
  hgvsc: ENST00000438383.1:c.58+19G>C
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000403663
  ensembl transcript: ENST00000429084
  gene symbol: AP4M1
  hgvsc: ENST00000429084.1:c.58+19G>C
  variant of: http://identifiers.org/hgnc/574
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1569
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11228
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2343
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5922
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10127
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1215
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3701
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 977
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 484
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15705
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 701
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 906
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1716
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 635
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1770
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: Other
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
reference allele: G
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum

7-99699415-C-CT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99699415
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99699416
    reference: chr 7
allele count: 2
allele frequency: 1.683898561950628e-5
allele num: 118772
alternate allele: CT
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000377625
  ensembl transcript: ENST00000394061
  gene symbol: AP4M1
  hgvsc: ENST00000394061.3:c.58+21dupT
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000352603
  ensembl transcript: ENST00000359593
  gene symbol: AP4M1
  hgvsc: ENST00000359593.4:c.58+21dupT
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000401613
  ensembl transcript: ENST00000438383
  gene symbol: AP4M1
  hgvsc: ENST00000438383.1:c.58+21dupT
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000221838
  ensembl transcript: ENST00000463195
  gene symbol: AP4M1
  hgvsc: ENST00000463195.1:n.25dupT
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000396928
  ensembl transcript: ENST00000446007
  gene symbol: AP4M1
  hgvsc: ENST00000446007.1:c.58+21dupT
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166508
  ensembl protein: ENSP00000344006
  ensembl transcript: ENST00000343023
  gene symbol: MCM7
  hgvsc: ENST00000343023.6:c.-499dupA
  variant of: http://identifiers.org/hgnc/6950
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000400598
  ensembl transcript: ENST00000445208
  gene symbol: AP4M1
  hgvsc: ENST00000445208.1:c.58+21dupT
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000414286
  ensembl transcript: ENST00000439416
  gene symbol: AP4M1
  hgvsc: ENST00000439416.1:c.58+21dupT
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000412185
  ensembl transcript: ENST00000421755
  gene symbol: AP4M1
  hgvsc: ENST00000421755.1:c.58+21dupT
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166508
  ensembl protein: ENSP00000307288
  ensembl transcript: ENST00000303887
  gene symbol: MCM7
  hgvsc: ENST00000303887.5:c.-499dupA
  variant of: http://identifiers.org/hgnc/6950
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000403663
  ensembl transcript: ENST00000429084
  gene symbol: AP4M1
  hgvsc: ENST00000429084.1:c.58+21dupT
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000221838
  ensembl transcript: ENST00000478501
  gene symbol: AP4M1
  hgvsc: ENST00000478501.1:n.137+21dupT
  variant of: http://identifiers.org/hgnc/574
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3705
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 906
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10085
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15727
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1569
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 699
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2345
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 973
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11231
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1770
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 635
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1217
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5923
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1726
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Other
population: African
population: South Asian
reference allele: C
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD

http://identifiers.org/exac.variant/7-99699420-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99699420
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99699420
    reference: chr 7
allele count: 3
allele frequency: 2.535711267010396e-5
allele num: 118310
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000401613
  ensembl transcript: ENST00000438383
  gene symbol: AP4M1
  hgvsc: ENST00000438383.1:c.58+25A>C
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000400598
  ensembl transcript: ENST00000445208
  gene symbol: AP4M1
  hgvsc: ENST00000445208.1:c.58+25A>C
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000396928
  ensembl transcript: ENST00000446007
  gene symbol: AP4M1
  hgvsc: ENST00000446007.1:c.58+25A>C
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000221838
  ensembl transcript: ENST00000478501
  gene symbol: AP4M1
  hgvsc: ENST00000478501.1:n.137+25A>C
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000403663
  ensembl transcript: ENST00000429084
  gene symbol: AP4M1
  hgvsc: ENST00000429084.1:c.58+25A>C
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000377625
  ensembl transcript: ENST00000394061
  gene symbol: AP4M1
  hgvsc: ENST00000394061.3:c.58+25A>C
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166508
  ensembl protein: ENSP00000344006
  ensembl transcript: ENST00000343023
  gene symbol: MCM7
  hgvsc: ENST00000343023.6:c.-503T>G
  variant of: http://identifiers.org/hgnc/6950
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166508
  ensembl protein: ENSP00000307288
  ensembl transcript: ENST00000303887
  gene symbol: MCM7
  hgvsc: ENST00000303887.5:c.-503T>G
  variant of: http://identifiers.org/hgnc/6950
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000352603
  ensembl transcript: ENST00000359593
  gene symbol: AP4M1
  hgvsc: ENST00000359593.4:c.58+25A>C
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000412185
  ensembl transcript: ENST00000421755
  gene symbol: AP4M1
  hgvsc: ENST00000421755.1:c.58+25A>C
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000221838
  ensembl transcript: ENST00000463195
  gene symbol: AP4M1
  hgvsc: ENST00000463195.1:n.29A>C
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000414286
  ensembl transcript: ENST00000439416
  gene symbol: AP4M1
  hgvsc: ENST00000439416.1:c.58+25A>C
  variant of: http://identifiers.org/hgnc/574
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5876
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11056
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 635
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9591
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2072
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15343
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1770
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3667
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 811
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1214
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1555
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1571
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
population: South Asian
population: Other
reference allele: A
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQ

7-99699423-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99699423
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99699423
    reference: chr 7
allele count: 1
allele frequency: 8.511362669163334e-6
allele num: 117490
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000412185
  ensembl transcript: ENST00000421755
  gene symbol: AP4M1
  hgvsc: ENST00000421755.1:c.58+28G>C
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000377625
  ensembl transcript: ENST00000394061
  gene symbol: AP4M1
  hgvsc: ENST00000394061.3:c.58+28G>C
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000396928
  ensembl transcript: ENST00000446007
  gene symbol: AP4M1
  hgvsc: ENST00000446007.1:c.58+28G>C
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000221838
  ensembl transcript: ENST00000463195
  gene symbol: AP4M1
  hgvsc: ENST00000463195.1:n.32G>C
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000221838
  ensembl transcript: ENST00000478501
  gene symbol: AP4M1
  hgvsc: ENST00000478501.1:n.137+28G>C
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000401613
  ensembl transcript: ENST00000438383
  gene symbol: AP4M1
  hgvsc: ENST00000438383.1:c.58+28G>C
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000403663
  ensembl transcript: ENST00000429084
  gene symbol: AP4M1
  hgvsc: ENST00000429084.1:c.58+28G>C
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000352603
  ensembl transcript: ENST00000359593
  gene symbol: AP4M1
  hgvsc: ENST00000359593.4:c.58+28G>C
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000414286
  ensembl transcript: ENST00000439416
  gene symbol: AP4M1
  hgvsc: ENST00000439416.1:c.58+28G>C
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000400598
  ensembl transcript: ENST00000445208
  gene symbol: AP4M1
  hgvsc: ENST00000445208.1:c.58+28G>C
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166508
  ensembl protein: ENSP00000344006
  ensembl transcript: ENST00000343023
  gene symbol: MCM7
  hgvsc: ENST00000343023.6:c.-506C>G
  variant of: http://identifiers.org/hgnc/6950
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166508
  ensembl protein: ENSP00000307288
  ensembl transcript: ENST00000303887
  gene symbol: MCM7
  hgvsc: ENST00000303887.5:c.-506C>G
  variant of: http://identifiers.org/hgnc/6950
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1211
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1563
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14902
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10892
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 644
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2190
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 997
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1770
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2317
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2432
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3626
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9054
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5762
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: African
population: East Asian
reference allele: G
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP

7-99699426-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99699426
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99699426
    reference: chr 7
allele count: 0
allele frequency: 0.0e0
allele num: 116438
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000377625
  ensembl transcript: ENST00000394061
  gene symbol: AP4M1
  hgvsc: ENST00000394061.3:c.58+31C>G
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000221838
  ensembl transcript: ENST00000463195
  gene symbol: AP4M1
  hgvsc: ENST00000463195.1:n.35C>G
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000403663
  ensembl transcript: ENST00000429084
  gene symbol: AP4M1
  hgvsc: ENST00000429084.1:c.58+31C>G
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000396928
  ensembl transcript: ENST00000446007
  gene symbol: AP4M1
  hgvsc: ENST00000446007.1:c.58+31C>G
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000400598
  ensembl transcript: ENST00000445208
  gene symbol: AP4M1
  hgvsc: ENST00000445208.1:c.58+31C>G
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000401613
  ensembl transcript: ENST00000438383
  gene symbol: AP4M1
  hgvsc: ENST00000438383.1:c.58+31C>G
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166508
  ensembl protein: ENSP00000307288
  ensembl transcript: ENST00000303887
  gene symbol: MCM7
  hgvsc: ENST00000303887.5:c.-509G>C
  variant of: http://identifiers.org/hgnc/6950
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166508
  ensembl protein: ENSP00000344006
  ensembl transcript: ENST00000343023
  gene symbol: MCM7
  hgvsc: ENST00000343023.6:c.-509G>C
  variant of: http://identifiers.org/hgnc/6950
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000412185
  ensembl transcript: ENST00000421755
  gene symbol: AP4M1
  hgvsc: ENST00000421755.1:c.58+31C>G
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000221838
  ensembl transcript: ENST00000478501
  gene symbol: AP4M1
  hgvsc: ENST00000478501.1:n.137+31C>G
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000414286
  ensembl transcript: ENST00000439416
  gene symbol: AP4M1
  hgvsc: ENST00000439416.1:c.58+31C>G
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000352603
  ensembl transcript: ENST00000359593
  gene symbol: AP4M1
  hgvsc: ENST00000359593.4:c.58+31C>G
  variant of: http://identifiers.org/hgnc/574
canonical: true
consequence: 5' UTR
filter: AC_Adj0
genotype depth: GenotypeDepth
  all individuals: 2740
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1770
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 636
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8838
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2699
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3527
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10644
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1560
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 721
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1210
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14493
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1195
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5641
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 907
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
population: Other
population: East Asian
reference allele: C
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum

7-99699426-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99699426
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99699426
    reference: chr 7
allele count: 1
allele frequency: 8.588261564094195e-6
allele num: 116438
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166508
  ensembl protein: ENSP00000307288
  ensembl transcript: ENST00000303887
  gene symbol: MCM7
  hgvsc: ENST00000303887.5:c.-509G>A
  variant of: http://identifiers.org/hgnc/6950
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166508
  ensembl protein: ENSP00000344006
  ensembl transcript: ENST00000343023
  gene symbol: MCM7
  hgvsc: ENST00000343023.6:c.-509G>A
  variant of: http://identifiers.org/hgnc/6950
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000377625
  ensembl transcript: ENST00000394061
  gene symbol: AP4M1
  hgvsc: ENST00000394061.3:c.58+31C>T
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000400598
  ensembl transcript: ENST00000445208
  gene symbol: AP4M1
  hgvsc: ENST00000445208.1:c.58+31C>T
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000403663
  ensembl transcript: ENST00000429084
  gene symbol: AP4M1
  hgvsc: ENST00000429084.1:c.58+31C>T
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000414286
  ensembl transcript: ENST00000439416
  gene symbol: AP4M1
  hgvsc: ENST00000439416.1:c.58+31C>T
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000396928
  ensembl transcript: ENST00000446007
  gene symbol: AP4M1
  hgvsc: ENST00000446007.1:c.58+31C>T
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000401613
  ensembl transcript: ENST00000438383
  gene symbol: AP4M1
  hgvsc: ENST00000438383.1:c.58+31C>T
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000221838
  ensembl transcript: ENST00000463195
  gene symbol: AP4M1
  hgvsc: ENST00000463195.1:n.35C>T
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000412185
  ensembl transcript: ENST00000421755
  gene symbol: AP4M1
  hgvsc: ENST00000421755.1:c.58+31C>T
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000221838
  ensembl transcript: ENST00000478501
  gene symbol: AP4M1
  hgvsc: ENST00000478501.1:n.137+31C>T
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000352603
  ensembl transcript: ENST00000359593
  gene symbol: AP4M1
  hgvsc: ENST00000359593.4:c.58+31C>T
  variant of: http://identifiers.org/hgnc/574
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 636
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5641
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1195
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 721
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3527
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 907
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1560
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10644
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8838
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14493
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2740
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1210
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2699
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1770
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ

7-99699428-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99699428
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99699428
    reference: chr 7
allele count: 5
allele frequency: 4.293835769369493e-5
allele num: 116446
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000401613
  ensembl transcript: ENST00000438383
  gene symbol: AP4M1
  hgvsc: ENST00000438383.1:c.58+33G>A
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000412185
  ensembl transcript: ENST00000421755
  gene symbol: AP4M1
  hgvsc: ENST00000421755.1:c.58+33G>A
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000400598
  ensembl transcript: ENST00000445208
  gene symbol: AP4M1
  hgvsc: ENST00000445208.1:c.58+33G>A
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000377625
  ensembl transcript: ENST00000394061
  gene symbol: AP4M1
  hgvsc: ENST00000394061.3:c.58+33G>A
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166508
  ensembl protein: ENSP00000307288
  ensembl transcript: ENST00000303887
  gene symbol: MCM7
  hgvsc: ENST00000303887.5:c.-511C>T
  variant of: http://identifiers.org/hgnc/6950
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166508
  ensembl protein: ENSP00000344006
  ensembl transcript: ENST00000343023
  gene symbol: MCM7
  hgvsc: ENST00000343023.6:c.-511C>T
  variant of: http://identifiers.org/hgnc/6950
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000352603
  ensembl transcript: ENST00000359593
  gene symbol: AP4M1
  hgvsc: ENST00000359593.4:c.58+33G>A
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000221838
  ensembl transcript: ENST00000463195
  gene symbol: AP4M1
  hgvsc: ENST00000463195.1:n.37G>A
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000403663
  ensembl transcript: ENST00000429084
  gene symbol: AP4M1
  hgvsc: ENST00000429084.1:c.58+33G>A
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000414286
  ensembl transcript: ENST00000439416
  gene symbol: AP4M1
  hgvsc: ENST00000439416.1:c.58+33G>A
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000396928
  ensembl transcript: ENST00000446007
  gene symbol: AP4M1
  hgvsc: ENST00000446007.1:c.58+33G>A
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000221838
  ensembl transcript: ENST00000478501
  gene symbol: AP4M1
  hgvsc: ENST00000478501.1:n.137+33G>A
  variant of: http://identifiers.org/hgnc/574
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 765
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2776
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1770
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8698
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 635
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1255
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3502
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1555
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14499
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1207
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5601
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2800
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 908
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2270
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
population: East Asian
population: Latino
reference allele: G
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum

7-99699430-G-GGGGCCGGGCGGGAGGGGCGCCCA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99699430
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99699453
    reference: chr 7
allele count: 1
allele frequency: 8.655610566769381e-6
allele num: 115532
alternate allele: GGGGCCGGGCGGGAGGGGCGCCCA
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000403663
  ensembl transcript: ENST00000429084
  gene symbol: AP4M1
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000414286
  ensembl transcript: ENST00000439416
  gene symbol: AP4M1
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000377625
  ensembl transcript: ENST00000394061
  gene symbol: AP4M1
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000221838
  ensembl transcript: ENST00000478501
  gene symbol: AP4M1
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000412185
  ensembl transcript: ENST00000421755
  gene symbol: AP4M1
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166508
  ensembl protein: ENSP00000307288
  ensembl transcript: ENST00000303887
  gene symbol: MCM7
  variant of: http://identifiers.org/hgnc/6950
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166508
  ensembl protein: ENSP00000344006
  ensembl transcript: ENST00000343023
  gene symbol: MCM7
  variant of: http://identifiers.org/hgnc/6950
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000352603
  ensembl transcript: ENST00000359593
  gene symbol: AP4M1
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000221838
  ensembl transcript: ENST00000463195
  gene symbol: AP4M1
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000401613
  ensembl transcript: ENST00000438383
  gene symbol: AP4M1
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000396928
  ensembl transcript: ENST00000446007
  gene symbol: AP4M1
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000400598
  ensembl transcript: ENST00000445208
  gene symbol: AP4M1
  variant of: http://identifiers.org/hgnc/574
canonical: true
consequence: 5' UTR
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 8417
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10389
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 905
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1770
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1430
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14214
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1207
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3463
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1551
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 880
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3321
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2259
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2885
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5517
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 635
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1442
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: East Asian
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: QD

7-99699431-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99699431
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99699431
    reference: chr 7
allele count: 1
allele frequency: 8.647676369359553e-6
allele num: 115638
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000414286
  ensembl transcript: ENST00000439416
  gene symbol: AP4M1
  hgvsc: ENST00000439416.1:c.58+36G>A
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166508
  ensembl protein: ENSP00000307288
  ensembl transcript: ENST00000303887
  gene symbol: MCM7
  hgvsc: ENST00000303887.5:c.-514C>T
  variant of: http://identifiers.org/hgnc/6950
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000221838
  ensembl transcript: ENST00000463195
  gene symbol: AP4M1
  hgvsc: ENST00000463195.1:n.40G>A
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000400598
  ensembl transcript: ENST00000445208
  gene symbol: AP4M1
  hgvsc: ENST00000445208.1:c.58+36G>A
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000401613
  ensembl transcript: ENST00000438383
  gene symbol: AP4M1
  hgvsc: ENST00000438383.1:c.58+36G>A
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000352603
  ensembl transcript: ENST00000359593
  gene symbol: AP4M1
  hgvsc: ENST00000359593.4:c.58+36G>A
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166508
  ensembl protein: ENSP00000344006
  ensembl transcript: ENST00000343023
  gene symbol: MCM7
  hgvsc: ENST00000343023.6:c.-514C>T
  variant of: http://identifiers.org/hgnc/6950
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000221838
  ensembl transcript: ENST00000478501
  gene symbol: AP4M1
  hgvsc: ENST00000478501.1:n.137+36G>A
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000412185
  ensembl transcript: ENST00000421755
  gene symbol: AP4M1
  hgvsc: ENST00000421755.1:c.58+36G>A
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000377625
  ensembl transcript: ENST00000394061
  gene symbol: AP4M1
  hgvsc: ENST00000394061.3:c.58+36G>A
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000396928
  ensembl transcript: ENST00000446007
  gene symbol: AP4M1
  hgvsc: ENST00000446007.1:c.58+36G>A
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000403663
  ensembl transcript: ENST00000429084
  gene symbol: AP4M1
  hgvsc: ENST00000429084.1:c.58+36G>A
  variant of: http://identifiers.org/hgnc/574
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1205
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2256
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 905
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1551
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3457
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2903
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3305
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14270
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 895
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1435
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8416
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10358
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 635
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: African
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum

7-99699432-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99699432
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99699432
    reference: chr 7
allele count: 1
allele frequency: 8.641399215360951e-6
allele num: 115722
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000377625
  ensembl transcript: ENST00000394061
  gene symbol: AP4M1
  hgvsc: ENST00000394061.3:c.58+37G>A
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000221838
  ensembl transcript: ENST00000463195
  gene symbol: AP4M1
  hgvsc: ENST00000463195.1:n.41G>A
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166508
  ensembl protein: ENSP00000344006
  ensembl transcript: ENST00000343023
  gene symbol: MCM7
  hgvsc: ENST00000343023.6:c.-515C>T
  variant of: http://identifiers.org/hgnc/6950
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000403663
  ensembl transcript: ENST00000429084
  gene symbol: AP4M1
  hgvsc: ENST00000429084.1:c.58+37G>A
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000412185
  ensembl transcript: ENST00000421755
  gene symbol: AP4M1
  hgvsc: ENST00000421755.1:c.58+37G>A
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000401613
  ensembl transcript: ENST00000438383
  gene symbol: AP4M1
  hgvsc: ENST00000438383.1:c.58+37G>A
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000414286
  ensembl transcript: ENST00000439416
  gene symbol: AP4M1
  hgvsc: ENST00000439416.1:c.58+37G>A
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000396928
  ensembl transcript: ENST00000446007
  gene symbol: AP4M1
  hgvsc: ENST00000446007.1:c.58+37G>A
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000221838
  ensembl transcript: ENST00000478501
  gene symbol: AP4M1
  hgvsc: ENST00000478501.1:n.137+37G>A
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000400598
  ensembl transcript: ENST00000445208
  gene symbol: AP4M1
  hgvsc: ENST00000445208.1:c.58+37G>A
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000352603
  ensembl transcript: ENST00000359593
  gene symbol: AP4M1
  hgvsc: ENST00000359593.4:c.58+37G>A
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166508
  ensembl protein: ENSP00000307288
  ensembl transcript: ENST00000303887
  gene symbol: MCM7
  hgvsc: ENST00000303887.5:c.-515C>T
  variant of: http://identifiers.org/hgnc/6950
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5478
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1770
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2260
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 898
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8395
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3298
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10299
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1453
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14358
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3438
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1205
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1550
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2911
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Other
population: South Asian
population: Latino
population: East Asian
reference allele: G
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP

7-99699436-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99699436
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99699436
    reference: chr 7
allele count: 23835
allele frequency: 2.096822436483919e-1
allele num: 113672
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000414286
  ensembl transcript: ENST00000439416
  gene symbol: AP4M1
  hgvsc: ENST00000439416.1:c.58+41G>A
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166508
  ensembl protein: ENSP00000307288
  ensembl transcript: ENST00000303887
  gene symbol: MCM7
  hgvsc: ENST00000303887.5:c.-519C>T
  variant of: http://identifiers.org/hgnc/6950
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000401613
  ensembl transcript: ENST00000438383
  gene symbol: AP4M1
  hgvsc: ENST00000438383.1:c.58+41G>A
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000396928
  ensembl transcript: ENST00000446007
  gene symbol: AP4M1
  hgvsc: ENST00000446007.1:c.58+41G>A
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000221838
  ensembl transcript: ENST00000463195
  gene symbol: AP4M1
  hgvsc: ENST00000463195.1:n.45G>A
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166508
  ensembl protein: ENSP00000344006
  ensembl transcript: ENST00000343023
  gene symbol: MCM7
  hgvsc: ENST00000343023.6:c.-519C>T
  variant of: http://identifiers.org/hgnc/6950
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000352603
  ensembl transcript: ENST00000359593
  gene symbol: AP4M1
  hgvsc: ENST00000359593.4:c.58+41G>A
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000221838
  ensembl transcript: ENST00000478501
  gene symbol: AP4M1
  hgvsc: ENST00000478501.1:n.137+41G>A
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000403663
  ensembl transcript: ENST00000429084
  gene symbol: AP4M1
  hgvsc: ENST00000429084.1:c.58+41G>A
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000412185
  ensembl transcript: ENST00000421755
  gene symbol: AP4M1
  hgvsc: ENST00000421755.1:c.58+41G>A
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000400598
  ensembl transcript: ENST00000445208
  gene symbol: AP4M1
  hgvsc: ENST00000445208.1:c.58+41G>A
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000377625
  ensembl transcript: ENST00000394061
  gene symbol: AP4M1
  hgvsc: ENST00000394061.3:c.58+41G>A
  variant of: http://identifiers.org/hgnc/574
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1501
  bin: 6.25e1
  variant carriers: 1096
genotype depth: GenotypeDepth
  all individuals: 6154
  bin: 2.25e1
  variant carriers: 760
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 8.75e1
  variant carriers: 352
genotype depth: GenotypeDepth
  all individuals: 3692
  bin: 1.75e1
  variant carriers: 485
genotype depth: GenotypeDepth
  all individuals: 4052
  bin: 4.25e1
  variant carriers: 2237
genotype depth: GenotypeDepth
  all individuals: 1709
  bin: 7.5e0
  variant carriers: 199
genotype depth: GenotypeDepth
  all individuals: 11699
  bin: 2.75e1
  variant carriers: 1155
genotype depth: GenotypeDepth
  all individuals: 2431
  bin: 5.25e1
  variant carriers: 1693
genotype depth: GenotypeDepth
  all individuals: 999
  bin: 2.5e0
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 2969
  bin: 1.25e1
  variant carriers: 322
genotype depth: GenotypeDepth
  all individuals: 8286
  bin: 3.25e1
  variant carriers: 1627
genotype depth: GenotypeDepth
  all individuals: 5056
  bin: 3.75e1
  variant carriers: 2046
genotype depth: GenotypeDepth
  all individuals: 927
  bin: 7.25e1
  variant carriers: 760
genotype depth: GenotypeDepth
  all individuals: 520
  bin: 8.25e1
  variant carriers: 431
genotype depth: GenotypeDepth
  all individuals: 716
  bin: 7.75e1
  variant carriers: 575
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 9.25e1
  variant carriers: 314
genotype depth: GenotypeDepth
  all individuals: 1966
  bin: 5.75e1
  variant carriers: 1441
genotype depth: GenotypeDepth
  all individuals: 1121
  bin: 6.75e1
  variant carriers: 854
genotype quality: GenotypeQuality
num of homozygotes: 3076
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
population: South Asian
population: European (Finnish)
population: Latino
reference allele: G
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP

7-99699438-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99699438
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99699438
    reference: chr 7
allele count: 1
allele frequency: 8.762705923589205e-6
allele num: 114120
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000400598
  ensembl transcript: ENST00000445208
  gene symbol: AP4M1
  hgvsc: ENST00000445208.1:c.58+43G>A
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000403663
  ensembl transcript: ENST00000429084
  gene symbol: AP4M1
  hgvsc: ENST00000429084.1:c.58+43G>A
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000412185
  ensembl transcript: ENST00000421755
  gene symbol: AP4M1
  hgvsc: ENST00000421755.1:c.58+43G>A
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000401613
  ensembl transcript: ENST00000438383
  gene symbol: AP4M1
  hgvsc: ENST00000438383.1:c.58+43G>A
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000396928
  ensembl transcript: ENST00000446007
  gene symbol: AP4M1
  hgvsc: ENST00000446007.1:c.58+43G>A
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000221838
  ensembl transcript: ENST00000463195
  gene symbol: AP4M1
  hgvsc: ENST00000463195.1:n.47G>A
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000377625
  ensembl transcript: ENST00000394061
  gene symbol: AP4M1
  hgvsc: ENST00000394061.3:c.58+43G>A
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166508
  ensembl protein: ENSP00000307288
  ensembl transcript: ENST00000303887
  gene symbol: MCM7
  hgvsc: ENST00000303887.5:c.-521C>T
  variant of: http://identifiers.org/hgnc/6950
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166508
  ensembl protein: ENSP00000344006
  ensembl transcript: ENST00000343023
  gene symbol: MCM7
  hgvsc: ENST00000343023.6:c.-521C>T
  variant of: http://identifiers.org/hgnc/6950
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000414286
  ensembl transcript: ENST00000439416
  gene symbol: AP4M1
  hgvsc: ENST00000439416.1:c.58+43G>A
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000352603
  ensembl transcript: ENST00000359593
  gene symbol: AP4M1
  hgvsc: ENST00000359593.4:c.58+43G>A
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000221838
  ensembl transcript: ENST00000478501
  gene symbol: AP4M1
  hgvsc: ENST00000478501.1:n.137+43G>A
  variant of: http://identifiers.org/hgnc/574
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16922
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11387
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1879
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3409
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1107
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 966
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 719
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1363
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3913
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 519
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5262
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3090
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6994
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1878
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: Latino
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: DP

7-99699440-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99699440
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99699440
    reference: chr 7
allele count: 9
allele frequency: 7.873877972388934e-5
allele num: 114302
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000412185
  ensembl transcript: ENST00000421755
  gene symbol: AP4M1
  hgvsc: ENST00000421755.1:c.58+45G>A
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000396928
  ensembl transcript: ENST00000446007
  gene symbol: AP4M1
  hgvsc: ENST00000446007.1:c.58+45G>A
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000221838
  ensembl transcript: ENST00000478501
  gene symbol: AP4M1
  hgvsc: ENST00000478501.1:n.137+45G>A
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000414286
  ensembl transcript: ENST00000439416
  gene symbol: AP4M1
  hgvsc: ENST00000439416.1:c.58+45G>A
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166508
  ensembl protein: ENSP00000344006
  ensembl transcript: ENST00000343023
  gene symbol: MCM7
  hgvsc: ENST00000343023.6:c.-523C>T
  variant of: http://identifiers.org/hgnc/6950
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166508
  ensembl protein: ENSP00000307288
  ensembl transcript: ENST00000303887
  gene symbol: MCM7
  hgvsc: ENST00000303887.5:c.-523C>T
  variant of: http://identifiers.org/hgnc/6950
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000401613
  ensembl transcript: ENST00000438383
  gene symbol: AP4M1
  hgvsc: ENST00000438383.1:c.58+45G>A
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000377625
  ensembl transcript: ENST00000394061
  gene symbol: AP4M1
  hgvsc: ENST00000394061.3:c.58+45G>A
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000352603
  ensembl transcript: ENST00000359593
  gene symbol: AP4M1
  hgvsc: ENST00000359593.4:c.58+45G>A
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000221838
  ensembl transcript: ENST00000463195
  gene symbol: AP4M1
  hgvsc: ENST00000463195.1:n.49G>A
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000400598
  ensembl transcript: ENST00000445208
  gene symbol: AP4M1
  hgvsc: ENST00000445208.1:c.58+45G>A
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000403663
  ensembl transcript: ENST00000429084
  gene symbol: AP4M1
  hgvsc: ENST00000429084.1:c.58+45G>A
  variant of: http://identifiers.org/hgnc/574
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1870
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1155
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1366
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 963
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3838
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7158
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11182
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1937
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17049
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3403
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 720
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5212
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 519
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: G
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum

7-99699441-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99699441
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99699441
    reference: chr 7
allele count: 0
allele frequency: 0.0e0
allele num: 114398
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000403663
  ensembl transcript: ENST00000429084
  gene symbol: AP4M1
  hgvsc: ENST00000429084.1:c.58+46G>A
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000221838
  ensembl transcript: ENST00000478501
  gene symbol: AP4M1
  hgvsc: ENST00000478501.1:n.137+46G>A
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000401613
  ensembl transcript: ENST00000438383
  gene symbol: AP4M1
  hgvsc: ENST00000438383.1:c.58+46G>A
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166508
  ensembl protein: ENSP00000344006
  ensembl transcript: ENST00000343023
  gene symbol: MCM7
  hgvsc: ENST00000343023.6:c.-524C>T
  variant of: http://identifiers.org/hgnc/6950
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000221838
  ensembl transcript: ENST00000463195
  gene symbol: AP4M1
  hgvsc: ENST00000463195.1:n.50G>A
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166508
  ensembl protein: ENSP00000307288
  ensembl transcript: ENST00000303887
  gene symbol: MCM7
  hgvsc: ENST00000303887.5:c.-524C>T
  variant of: http://identifiers.org/hgnc/6950
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000377625
  ensembl transcript: ENST00000394061
  gene symbol: AP4M1
  hgvsc: ENST00000394061.3:c.58+46G>A
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000396928
  ensembl transcript: ENST00000446007
  gene symbol: AP4M1
  hgvsc: ENST00000446007.1:c.58+46G>A
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000414286
  ensembl transcript: ENST00000439416
  gene symbol: AP4M1
  hgvsc: ENST00000439416.1:c.58+46G>A
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000412185
  ensembl transcript: ENST00000421755
  gene symbol: AP4M1
  hgvsc: ENST00000421755.1:c.58+46G>A
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000400598
  ensembl transcript: ENST00000445208
  gene symbol: AP4M1
  hgvsc: ENST00000445208.1:c.58+46G>A
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000352603
  ensembl transcript: ENST00000359593
  gene symbol: AP4M1
  hgvsc: ENST00000359593.4:c.58+46G>A
  variant of: http://identifiers.org/hgnc/574
canonical: true
consequence: 5' UTR
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 1862
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1977
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7203
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 961
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1365
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 519
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3058
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1155
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3423
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17085
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3825
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11117
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: South Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: East Asian
reference allele: G
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD

7-99699445-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99699445
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99699445
    reference: chr 7
allele count: 1
allele frequency: 8.774238834781082e-6
allele num: 113970
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000221838
  ensembl transcript: ENST00000478501
  gene symbol: AP4M1
  hgvsc: ENST00000478501.1:n.137+50G>A
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000414286
  ensembl transcript: ENST00000439416
  gene symbol: AP4M1
  hgvsc: ENST00000439416.1:c.58+50G>A
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166508
  ensembl protein: ENSP00000307288
  ensembl transcript: ENST00000303887
  gene symbol: MCM7
  hgvsc: ENST00000303887.5:c.-528C>T
  variant of: http://identifiers.org/hgnc/6950
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000412185
  ensembl transcript: ENST00000421755
  gene symbol: AP4M1
  hgvsc: ENST00000421755.1:c.58+50G>A
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000400598
  ensembl transcript: ENST00000445208
  gene symbol: AP4M1
  hgvsc: ENST00000445208.1:c.58+50G>A
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000377625
  ensembl transcript: ENST00000394061
  gene symbol: AP4M1
  hgvsc: ENST00000394061.3:c.58+50G>A
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000221838
  ensembl transcript: ENST00000463195
  gene symbol: AP4M1
  hgvsc: ENST00000463195.1:n.54G>A
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166508
  ensembl protein: ENSP00000344006
  ensembl transcript: ENST00000343023
  gene symbol: MCM7
  hgvsc: ENST00000343023.6:c.-528C>T
  variant of: http://identifiers.org/hgnc/6950
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000352603
  ensembl transcript: ENST00000359593
  gene symbol: AP4M1
  hgvsc: ENST00000359593.4:c.58+50G>A
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000396928
  ensembl transcript: ENST00000446007
  gene symbol: AP4M1
  hgvsc: ENST00000446007.1:c.58+50G>A
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000403663
  ensembl transcript: ENST00000429084
  gene symbol: AP4M1
  hgvsc: ENST00000429084.1:c.58+50G>A
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000401613
  ensembl transcript: ENST00000438383
  gene symbol: AP4M1
  hgvsc: ENST00000438383.1:c.58+50G>A
  variant of: http://identifiers.org/hgnc/574
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3425
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16404
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2175
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 715
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5035
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1176
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8237
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 953
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1839
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3009
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10531
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4116
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: G
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ

http://identifiers.org/exac.variant/7-99699457-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99699457
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99699457
    reference: chr 7
allele count: 32
allele frequency: 2.802936075539127e-4
allele num: 114166
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000377625
  ensembl transcript: ENST00000394061
  gene symbol: AP4M1
  hgvsc: ENST00000394061.3:c.59-46C>A
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000412185
  ensembl transcript: ENST00000421755
  gene symbol: AP4M1
  hgvsc: ENST00000421755.1:c.59-46C>A
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000403663
  ensembl transcript: ENST00000429084
  gene symbol: AP4M1
  hgvsc: ENST00000429084.1:c.59-46C>A
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166508
  ensembl protein: ENSP00000344006
  ensembl transcript: ENST00000343023
  gene symbol: MCM7
  hgvsc: ENST00000343023.6:c.-540G>T
  variant of: http://identifiers.org/hgnc/6950
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000396928
  ensembl transcript: ENST00000446007
  gene symbol: AP4M1
  hgvsc: ENST00000446007.1:c.59-46C>A
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000221838
  ensembl transcript: ENST00000463195
  gene symbol: AP4M1
  hgvsc: ENST00000463195.1:n.66C>A
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000400598
  ensembl transcript: ENST00000445208
  gene symbol: AP4M1
  hgvsc: ENST00000445208.1:c.59-46C>A
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000401613
  ensembl transcript: ENST00000438383
  gene symbol: AP4M1
  hgvsc: ENST00000438383.1:c.59-46C>A
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000221838
  ensembl transcript: ENST00000478501
  gene symbol: AP4M1
  hgvsc: ENST00000478501.1:n.138-46C>A
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000414286
  ensembl transcript: ENST00000439416
  gene symbol: AP4M1
  hgvsc: ENST00000439416.1:c.59-46C>A
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166508
  ensembl protein: ENSP00000307288
  ensembl transcript: ENST00000303887
  gene symbol: MCM7
  hgvsc: ENST00000303887.5:c.-540G>T
  variant of: http://identifiers.org/hgnc/6950
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000352603
  ensembl transcript: ENST00000359593
  gene symbol: AP4M1
  hgvsc: ENST00000359593.4:c.59-46C>A
  variant of: http://identifiers.org/hgnc/574
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2292
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 713
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 940
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 511
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2959
  bin: 4.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 16781
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 3331
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4966
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10448
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3436
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1822
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 9078
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1332
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 942
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 9.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: Other
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum

7-99699460-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99699460
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99699460
    reference: chr 7
allele count: 1
allele frequency: 8.725698928484172e-6
allele num: 114604
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166508
  ensembl protein: ENSP00000344006
  ensembl transcript: ENST00000343023
  gene symbol: MCM7
  hgvsc: ENST00000343023.6:c.-543C>T
  variant of: http://identifiers.org/hgnc/6950
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000414286
  ensembl transcript: ENST00000439416
  gene symbol: AP4M1
  hgvsc: ENST00000439416.1:c.59-43G>A
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000221838
  ensembl transcript: ENST00000478501
  gene symbol: AP4M1
  hgvsc: ENST00000478501.1:n.138-43G>A
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000377625
  ensembl transcript: ENST00000394061
  gene symbol: AP4M1
  hgvsc: ENST00000394061.3:c.59-43G>A
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000401613
  ensembl transcript: ENST00000438383
  gene symbol: AP4M1
  hgvsc: ENST00000438383.1:c.59-43G>A
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000352603
  ensembl transcript: ENST00000359593
  gene symbol: AP4M1
  hgvsc: ENST00000359593.4:c.59-43G>A
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000396928
  ensembl transcript: ENST00000446007
  gene symbol: AP4M1
  hgvsc: ENST00000446007.1:c.59-43G>A
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166508
  ensembl protein: ENSP00000307288
  ensembl transcript: ENST00000303887
  gene symbol: MCM7
  hgvsc: ENST00000303887.5:c.-543C>T
  variant of: http://identifiers.org/hgnc/6950
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000221838
  ensembl transcript: ENST00000463195
  gene symbol: AP4M1
  hgvsc: ENST00000463195.1:n.69G>A
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000403663
  ensembl transcript: ENST00000429084
  gene symbol: AP4M1
  hgvsc: ENST00000429084.1:c.59-43G>A
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000400598
  ensembl transcript: ENST00000445208
  gene symbol: AP4M1
  hgvsc: ENST00000445208.1:c.59-43G>A
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000412185
  ensembl transcript: ENST00000421755
  gene symbol: AP4M1
  hgvsc: ENST00000421755.1:c.59-43G>A
  variant of: http://identifiers.org/hgnc/574
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3234
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2340
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1324
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9601
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1807
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4964
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3196
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10394
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 863
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16760
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 510
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: Other
population: South Asian
population: European (Non-Finnish)
population: African
population: Latino
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP

7-99699464-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99699464
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99699464
    reference: chr 7
allele count: 1
allele frequency: 8.715356458079136e-6
allele num: 114740
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166508
  ensembl protein: ENSP00000307288
  ensembl transcript: ENST00000303887
  gene symbol: MCM7
  hgvsc: ENST00000303887.5:c.-547C>G
  variant of: http://identifiers.org/hgnc/6950
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000377625
  ensembl transcript: ENST00000394061
  gene symbol: AP4M1
  hgvsc: ENST00000394061.3:c.59-39G>C
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000221838
  ensembl transcript: ENST00000463195
  gene symbol: AP4M1
  hgvsc: ENST00000463195.1:n.73G>C
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000401613
  ensembl transcript: ENST00000438383
  gene symbol: AP4M1
  hgvsc: ENST00000438383.1:c.59-39G>C
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166508
  ensembl protein: ENSP00000344006
  ensembl transcript: ENST00000343023
  gene symbol: MCM7
  hgvsc: ENST00000343023.6:c.-547C>G
  variant of: http://identifiers.org/hgnc/6950
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000400598
  ensembl transcript: ENST00000445208
  gene symbol: AP4M1
  hgvsc: ENST00000445208.1:c.59-39G>C
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000403663
  ensembl transcript: ENST00000429084
  gene symbol: AP4M1
  hgvsc: ENST00000429084.1:c.59-39G>C
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000412185
  ensembl transcript: ENST00000421755
  gene symbol: AP4M1
  hgvsc: ENST00000421755.1:c.59-39G>C
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000414286
  ensembl transcript: ENST00000439416
  gene symbol: AP4M1
  hgvsc: ENST00000439416.1:c.59-39G>C
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000352603
  ensembl transcript: ENST00000359593
  gene symbol: AP4M1
  hgvsc: ENST00000359593.4:c.59-39G>C
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000396928
  ensembl transcript: ENST00000446007
  gene symbol: AP4M1
  hgvsc: ENST00000446007.1:c.59-39G>C
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000221838
  ensembl transcript: ENST00000478501
  gene symbol: AP4M1
  hgvsc: ENST00000478501.1:n.138-39G>C
  variant of: http://identifiers.org/hgnc/574
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 774
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 510
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2963
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1803
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 930
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10179
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 709
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1324
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2383
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3076
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16722
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2935
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: South Asian
population: East Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD

7-99699468-CG-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99699468
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99699467
    reference: chr 7
allele count: 1
allele frequency: 8.706251088281386e-6
allele num: 114860
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000396928
  ensembl transcript: ENST00000446007
  gene symbol: AP4M1
  hgvsc: ENST00000446007.1:c.59-34delG
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000221838
  ensembl transcript: ENST00000463195
  gene symbol: AP4M1
  hgvsc: ENST00000463195.1:n.78delG
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000403663
  ensembl transcript: ENST00000429084
  gene symbol: AP4M1
  hgvsc: ENST00000429084.1:c.59-34delG
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000412185
  ensembl transcript: ENST00000421755
  gene symbol: AP4M1
  hgvsc: ENST00000421755.1:c.59-34delG
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000400598
  ensembl transcript: ENST00000445208
  gene symbol: AP4M1
  hgvsc: ENST00000445208.1:c.59-34delG
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000414286
  ensembl transcript: ENST00000439416
  gene symbol: AP4M1
  hgvsc: ENST00000439416.1:c.59-34delG
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166508
  ensembl protein: ENSP00000344006
  ensembl transcript: ENST00000343023
  gene symbol: MCM7
  hgvsc: ENST00000343023.6:c.-552delC
  variant of: http://identifiers.org/hgnc/6950
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000377625
  ensembl transcript: ENST00000394061
  gene symbol: AP4M1
  hgvsc: ENST00000394061.3:c.59-34delG
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000352603
  ensembl transcript: ENST00000359593
  gene symbol: AP4M1
  hgvsc: ENST00000359593.4:c.59-34delG
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000221838
  ensembl transcript: ENST00000478501
  gene symbol: AP4M1
  hgvsc: ENST00000478501.1:n.138-34delG
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166508
  ensembl protein: ENSP00000307288
  ensembl transcript: ENST00000303887
  gene symbol: MCM7
  hgvsc: ENST00000303887.5:c.-552delC
  variant of: http://identifiers.org/hgnc/6950
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000401613
  ensembl transcript: ENST00000438383
  gene symbol: AP4M1
  hgvsc: ENST00000438383.1:c.59-34delG
  variant of: http://identifiers.org/hgnc/574
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 710
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2880
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16695
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 930
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10308
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3012
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2382
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 509
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1325
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 725
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10445
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2925
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1806
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: European (Finnish)
reference allele: CG
site quality: DP
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum

http://identifiers.org/exac.variant/7-99699474-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99699474
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99699474
    reference: chr 7
allele count: 1
allele frequency: 8.684475631361379e-6
allele num: 115148
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000401613
  ensembl transcript: ENST00000438383
  gene symbol: AP4M1
  hgvsc: ENST00000438383.1:c.59-29A>C
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166508
  ensembl protein: ENSP00000344006
  ensembl transcript: ENST00000343023
  gene symbol: MCM7
  hgvsc: ENST00000343023.6:c.-557T>G
  variant of: http://identifiers.org/hgnc/6950
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000414286
  ensembl transcript: ENST00000439416
  gene symbol: AP4M1
  hgvsc: ENST00000439416.1:c.59-29A>C
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166508
  ensembl protein: ENSP00000307288
  ensembl transcript: ENST00000303887
  gene symbol: MCM7
  hgvsc: ENST00000303887.5:c.-557T>G
  variant of: http://identifiers.org/hgnc/6950
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000221838
  ensembl transcript: ENST00000478501
  gene symbol: AP4M1
  hgvsc: ENST00000478501.1:n.138-29A>C
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000400598
  ensembl transcript: ENST00000445208
  gene symbol: AP4M1
  hgvsc: ENST00000445208.1:c.59-29A>C
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000352603
  ensembl transcript: ENST00000359593
  gene symbol: AP4M1
  hgvsc: ENST00000359593.4:c.59-29A>C
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000412185
  ensembl transcript: ENST00000421755
  gene symbol: AP4M1
  hgvsc: ENST00000421755.1:c.59-29A>C
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000403663
  ensembl transcript: ENST00000429084
  gene symbol: AP4M1
  hgvsc: ENST00000429084.1:c.59-29A>C
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000377625
  ensembl transcript: ENST00000394061
  gene symbol: AP4M1
  hgvsc: ENST00000394061.3:c.59-29A>C
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000221838
  ensembl transcript: ENST00000463195
  gene symbol: AP4M1
  hgvsc: ENST00000463195.1:n.83A>C
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000396928
  ensembl transcript: ENST00000446007
  gene symbol: AP4M1
  hgvsc: ENST00000446007.1:c.59-29A>C
  variant of: http://identifiers.org/hgnc/574
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11089
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2349
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2846
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4929
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16785
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10253
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 929
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2564
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 710
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 602
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1809
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1324
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: DP

http://identifiers.org/exac.variant/7-99699476-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99699476
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99699476
    reference: chr 7
allele count: 1
allele frequency: 8.673177331783726e-6
allele num: 115298
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000352603
  ensembl transcript: ENST00000359593
  gene symbol: AP4M1
  hgvsc: ENST00000359593.4:c.59-27C>A
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000401613
  ensembl transcript: ENST00000438383
  gene symbol: AP4M1
  hgvsc: ENST00000438383.1:c.59-27C>A
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000221838
  ensembl transcript: ENST00000478501
  gene symbol: AP4M1
  hgvsc: ENST00000478501.1:n.138-27C>A
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000221838
  ensembl transcript: ENST00000463195
  gene symbol: AP4M1
  hgvsc: ENST00000463195.1:n.85C>A
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000414286
  ensembl transcript: ENST00000439416
  gene symbol: AP4M1
  hgvsc: ENST00000439416.1:c.59-27C>A
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166508
  ensembl protein: ENSP00000307288
  ensembl transcript: ENST00000303887
  gene symbol: MCM7
  hgvsc: ENST00000303887.5:c.-559G>T
  variant of: http://identifiers.org/hgnc/6950
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000412185
  ensembl transcript: ENST00000421755
  gene symbol: AP4M1
  hgvsc: ENST00000421755.1:c.59-27C>A
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000400598
  ensembl transcript: ENST00000445208
  gene symbol: AP4M1
  hgvsc: ENST00000445208.1:c.59-27C>A
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000403663
  ensembl transcript: ENST00000429084
  gene symbol: AP4M1
  hgvsc: ENST00000429084.1:c.59-27C>A
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166508
  ensembl protein: ENSP00000344006
  ensembl transcript: ENST00000343023
  gene symbol: MCM7
  hgvsc: ENST00000343023.6:c.-559G>T
  variant of: http://identifiers.org/hgnc/6950
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000377625
  ensembl transcript: ENST00000394061
  gene symbol: AP4M1
  hgvsc: ENST00000394061.3:c.59-27C>A
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000396928
  ensembl transcript: ENST00000446007
  gene symbol: AP4M1
  hgvsc: ENST00000446007.1:c.59-27C>A
  variant of: http://identifiers.org/hgnc/574
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10274
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11248
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 928
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16815
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 587
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2332
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2899
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1323
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4923
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2784
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1808
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 709
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: C
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum

7-99699482-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99699482
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99699482
    reference: chr 7
allele count: 3
allele frequency: 2.597852441981296e-5
allele num: 115480
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000412185
  ensembl transcript: ENST00000421755
  gene symbol: AP4M1
  hgvsc: ENST00000421755.1:c.59-21C>T
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000221838
  ensembl transcript: ENST00000478501
  gene symbol: AP4M1
  hgvsc: ENST00000478501.1:n.138-21C>T
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000401613
  ensembl transcript: ENST00000438383
  gene symbol: AP4M1
  hgvsc: ENST00000438383.1:c.59-21C>T
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000221838
  ensembl transcript: ENST00000463195
  gene symbol: AP4M1
  hgvsc: ENST00000463195.1:n.91C>T
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000352603
  ensembl transcript: ENST00000359593
  gene symbol: AP4M1
  hgvsc: ENST00000359593.4:c.59-21C>T
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166508
  ensembl protein: ENSP00000344006
  ensembl transcript: ENST00000343023
  gene symbol: MCM7
  hgvsc: ENST00000343023.6:c.-565G>A
  variant of: http://identifiers.org/hgnc/6950
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000400598
  ensembl transcript: ENST00000445208
  gene symbol: AP4M1
  hgvsc: ENST00000445208.1:c.59-21C>T
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166508
  ensembl protein: ENSP00000307288
  ensembl transcript: ENST00000303887
  gene symbol: MCM7
  hgvsc: ENST00000303887.5:c.-565G>A
  variant of: http://identifiers.org/hgnc/6950
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000403663
  ensembl transcript: ENST00000429084
  gene symbol: AP4M1
  hgvsc: ENST00000429084.1:c.59-21C>T
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000414286
  ensembl transcript: ENST00000439416
  gene symbol: AP4M1
  hgvsc: ENST00000439416.1:c.59-21C>T
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000377625
  ensembl transcript: ENST00000394061
  gene symbol: AP4M1
  hgvsc: ENST00000394061.3:c.59-21C>T
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000396928
  ensembl transcript: ENST00000446007
  gene symbol: AP4M1
  hgvsc: ENST00000446007.1:c.59-21C>T
  variant of: http://identifiers.org/hgnc/574
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2895
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11664
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 926
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1322
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 509
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2300
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10290
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2274
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 709
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2657
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1808
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum

7-99699484-G-GTGTCGC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99699484
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 99699490
    reference: chr 7
allele count: 1
allele frequency: 8.652614820198665e-6
allele num: 115572
alternate allele: GTGTCGC
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000221838
  ensembl transcript: ENST00000478501
  gene symbol: AP4M1
  hgvsc: ENST00000478501.1:n.138-19_138-18insTGTCGC
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000400598
  ensembl transcript: ENST00000445208
  gene symbol: AP4M1
  hgvsc: ENST00000445208.1:c.59-19_59-18insTGTCGC
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166508
  ensembl protein: ENSP00000307288
  ensembl transcript: ENST00000303887
  gene symbol: MCM7
  hgvsc: ENST00000303887.5:c.-568_-567insGCGACA
  variant of: http://identifiers.org/hgnc/6950
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000377625
  ensembl transcript: ENST00000394061
  gene symbol: AP4M1
  hgvsc: ENST00000394061.3:c.59-19_59-18insTGTCGC
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000352603
  ensembl transcript: ENST00000359593
  gene symbol: AP4M1
  hgvsc: ENST00000359593.4:c.59-19_59-18insTGTCGC
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000396928
  ensembl transcript: ENST00000446007
  gene symbol: AP4M1
  hgvsc: ENST00000446007.1:c.59-19_59-18insTGTCGC
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166508
  ensembl protein: ENSP00000344006
  ensembl transcript: ENST00000343023
  gene symbol: MCM7
  hgvsc: ENST00000343023.6:c.-568_-567insGCGACA
  variant of: http://identifiers.org/hgnc/6950
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000403663
  ensembl transcript: ENST00000429084
  gene symbol: AP4M1
  hgvsc: ENST00000429084.1:c.59-19_59-18insTGTCGC
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000414286
  ensembl transcript: ENST00000439416
  gene symbol: AP4M1
  hgvsc: ENST00000439416.1:c.59-19_59-18insTGTCGC
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000412185
  ensembl transcript: ENST00000421755
  gene symbol: AP4M1
  hgvsc: ENST00000421755.1:c.59-19_59-18insTGTCGC
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000221838
  ensembl protein: ENSP00000401613
  ensembl transcript: ENST00000438383
  gene symbol: AP4M1
  hgvsc: ENST00000438383.1:c.59-19_59-18insTGTCGC
  variant of: http://identifiers.org/hgnc/574
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000221838
  ensembl transcript: ENST00000463195
  gene symbol: AP4M1
  hgvsc: ENST00000463195.1:n.93_94insTGTCGC
  variant of: http://identifiers.org/hgnc/574
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11804
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2154
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2608
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1321
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1811
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 708
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10313
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4913
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16867
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 509
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2893
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
reference allele: G

GenotypeQuality
all individuals: 93
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1788
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42399
bin: 9.75e1
variant carriers: 5

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6574
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8558
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 2.603262755987504e-4
allele num: 11524
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16480
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10054
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.074463506118183e-5
allele num: 65052
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

FS
type: SiteQuality
SIO_000300: 1.594e0

QD
type: SiteQuality
SIO_000300: 1.425e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.96e0

MQRankSum
type: SiteQuality
SIO_000300: -3.64e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.66e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.02e-1

VQSLOD
type: SiteQuality
SIO_000300: 9.17e-1

DP
type: SiteQuality
SIO_000300: 3.167058e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 2513
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1322
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 212
bin: 5.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.610986443699855e-5
allele num: 65062
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11524
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.068697657482704e-5
allele num: 16478
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6572
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10054
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8558
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.74e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.53e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.55e-1

DP
type: SiteQuality
SIO_000300: 3.166523e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -1.825e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.93e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 3.98e0

QD
type: SiteQuality
SIO_000300: 1.474e1

GenotypeQuality
all individuals: 44
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1757
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 122
bin: 1.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.537468097536976e-5
allele num: 65042
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11520
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8558
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16482
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10040
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6574
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 5.9e-1

FS
type: SiteQuality
SIO_000300: 2.144e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.14e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.6e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 2.43e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 7.19e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.349e0

DP
type: SiteQuality
SIO_000300: 3.165531e6

QD
type: SiteQuality
SIO_000300: 1.168e1

GenotypeQuality
all individuals: 1320
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1035
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 567
bin: 4.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10040
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16482
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11520
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6574
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8558
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.537468097536976e-5
allele num: 65042
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.349e0

MQRankSum
type: SiteQuality
SIO_000300: 5.9e-1

FS
type: SiteQuality
SIO_000300: 2.144e0

QD
type: SiteQuality
SIO_000300: 1.168e1

DP
type: SiteQuality
SIO_000300: 3.165531e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.6e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.14e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.19e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.43e-1

GenotypeQuality
all individuals: 42396
bin: 9.75e1
variant carriers: 8

GenotypeQuality
all individuals: 592
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2371
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 8
allele frequency: 1.230314960629921e-4
allele num: 65024
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10042
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6566
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8550
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16480
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.17e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 2.32e-1

DP
type: SiteQuality
SIO_000300: 3.165107e6

VQSLOD
type: SiteQuality
SIO_000300: 3.86e0

MQRankSum
type: SiteQuality
SIO_000300: -1.8e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.462e0

MQ
type: SiteQuality
SIO_000300: 5.975e1

QD
type: SiteQuality
SIO_000300: 1.234e1

GenotypeQuality
all individuals: 3048
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17131
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7814
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 223
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1489
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1688
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1909
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3916
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12626
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 98
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 922
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1246
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 167
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 805
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 827
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 571
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2058
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3146
bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11460
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8588
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6504
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65568
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10162
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.216693028348948e-4
allele num: 16438
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 9.699999999999999e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.495e0

MQRankSum
type: SiteQuality
SIO_000300: -3.35e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.5e-3

FS
type: SiteQuality
SIO_000300: 1.0257e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.95e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.012e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 2.122792e6

GenotypeQuality
all individuals: 98
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7814
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3916
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3146
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2058
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 223
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 962
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 571
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3048
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 827
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1688
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 167
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1489
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1246
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12626
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 17131
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1909
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 922
bin: 5.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11460
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6504
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10162
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8588
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.525134211810639e-5
allele num: 65568
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16438
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.0e0

VQSLOD
type: SiteQuality
SIO_000300: -1.012e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.5e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.495e0

MQRankSum
type: SiteQuality
SIO_000300: -3.35e-1

DP
type: SiteQuality
SIO_000300: 2.122792e6

QD
type: SiteQuality
SIO_000300: 9.699999999999999e0

FS
type: SiteQuality
SIO_000300: 1.0257e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.95e-1

GenotypeQuality
all individuals: 117
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 867
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2032
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65486
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.741258741258741e-5
allele num: 11440
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6490
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10148
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16430
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8580
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.8e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.304e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.9e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
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SIO_000300: 5.27e-1

VQSLOD
type: SiteQuality
SIO_000300: -5.729e-1

ReadPosRankSum
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DP
type: SiteQuality
SIO_000300: 2.122882e6

MQ
type: SiteQuality
SIO_000300: 5.907e1

QD
type: SiteQuality
SIO_000300: 8.1e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8584
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65476
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11466
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10158
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6504
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.086427267194157e-5
allele num: 16430
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -2.4e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.81e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.53e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.189e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.087e0

FS
type: SiteQuality
SIO_000300: 5.699e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.35e0

DP
type: SiteQuality
SIO_000300: 2.124748e6

GenotypeQuality
all individuals: 1580
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 225
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 18137
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12591
bin: 9.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.527277170260859e-5
allele num: 65476
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16430
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6504
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11466
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10158
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8584
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.699e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.35e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.53e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.81e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.4e-2

QD
type: SiteQuality
SIO_000300: 1.189e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.087e0

DP
type: SiteQuality
SIO_000300: 2.124748e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 18695
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 1653
bin: 4.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10166
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8586
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16434
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11460
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.1020258725897e-5
allele num: 65552
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6504
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 6.59e-1

MQ
type: SiteQuality
SIO_000300: 5.884e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.28e-1

DP
type: SiteQuality
SIO_000300: 2.125483e6

VQSLOD
type: SiteQuality
SIO_000300: 8.29e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.6e-3

BaseQRankSum
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SIO_000300: -2.351e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.32e-1

QD
type: SiteQuality
SIO_000300: 1.193e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11466
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10170
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65558
num of homozygotes: 0

South Asian
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allele count: 3
allele frequency: 1.825261620832319e-4
allele num: 16436
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8590
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6500
num of homozygotes: 0

DP
type: SiteQuality
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MQRankSum
type: SiteQuality
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ClippingRankSum
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BaseQRankSum
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InbreedingCoeff
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FS
type: SiteQuality
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MQ
type: SiteQuality
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ReadPosRankSum
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VQSLOD
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QD
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SIO_000300: 1.042e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6502
num of homozygotes: 0

African
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allele count: 1
allele frequency: 9.84251968503937e-5
allele num: 10160
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8594
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11468
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65560
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 892
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BaseQRankSum
type: SiteQuality
SIO_000300: -1.327e0

FS
type: SiteQuality
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MQRankSum
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QD
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ClippingRankSum
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VQSLOD
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DP
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 4.2e-3

ReadPosRankSum
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MQ
type: SiteQuality
SIO_000300: 5.932e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6508
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65578
num of homozygotes: 0

African
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allele frequency: 0.0e0
allele num: 10166
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8594
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.716875871687587e-5
allele num: 11472
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.21e1

ClippingRankSum
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BaseQRankSum
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DP
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InbreedingCoeff
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FS
type: SiteQuality
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VQSLOD
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ReadPosRankSum
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MQRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 20761
bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.048873441263453e-5
allele num: 65598
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11472
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16442
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8590
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10166
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6512
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.99e0

QD
type: SiteQuality
SIO_000300: 1.271e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.48e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.717e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.32e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.4e-3

DP
type: SiteQuality
SIO_000300: 2.138314e6

ClippingRankSum
type: SiteQuality
SIO_000300: -9.48e-1

MQ
type: SiteQuality
SIO_000300: 5.921e1

GenotypeQuality
all individuals: 361
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 77
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 3

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 801
bin: 3.25e1
variant carriers: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.21654501216545e-4
allele num: 16440
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11470
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10172
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6512
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.163602513381429e-4
allele num: 8594
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.25e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.422e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.8e-3

FS
type: SiteQuality
SIO_000300: 9.061999999999999e0

VQSLOD
type: SiteQuality
SIO_000300: -8.309999999999999e-2

MQRankSum
type: SiteQuality
SIO_000300: 6.3e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.315e0

DP
type: SiteQuality
SIO_000300: 2.143523e6

BaseQRankSum
type: SiteQuality
SIO_000300: 8.169999999999999e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16444
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10194
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8594
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6510
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.522765341860819e-5
allele num: 65670
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11480
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.49e0

FS
type: SiteQuality
SIO_000300: 3.345e0

MQRankSum
type: SiteQuality
SIO_000300: 8.46e-1

VQSLOD
type: SiteQuality
SIO_000300: 9.2e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 3.58e-1

DP
type: SiteQuality
SIO_000300: 2.157536e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.6e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.7e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.055e1

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6534
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11488
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8600
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.52077376969402e-5
allele num: 65756
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10202
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16460
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.167228e6

VQSLOD
type: SiteQuality
SIO_000300: -5.711000000000001e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.066e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-3

FS
type: SiteQuality
SIO_000300: 3.441e0

QD
type: SiteQuality
SIO_000300: 1.242e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.82e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.59e-1

MQRankSum
type: SiteQuality
SIO_000300: -5.8e-1

MQ
type: SiteQuality
SIO_000300: 5.886e1

GenotypeQuality
all individuals: 304
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 61
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 3144
bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10204
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16462
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6538
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11484
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.520403819254394e-5
allele num: 65772
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8600
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.973e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.1e-3

QD
type: SiteQuality
SIO_000300: 1.435e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.39e-1

MQRankSum
type: SiteQuality
SIO_000300: -8.36e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.32e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.32e-1

DP
type: SiteQuality
SIO_000300: 2.168321e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.497e0

FS
type: SiteQuality
SIO_000300: 5.448e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65850
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8606
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6566
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11500
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10220
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.070908207867897e-5
allele num: 16472
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.53e-1

BaseQRankSum
type: SiteQuality
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QD
type: SiteQuality
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MQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.968e1

VQSLOD
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ClippingRankSum
type: SiteQuality
SIO_000300: 6.74e-1

InbreedingCoeff
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 2.174702e6

FS
type: SiteQuality
SIO_000300: 8.05e-1

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16472
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11500
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.518602885345482e-5
allele num: 65850
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8606
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10220
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6566
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.29e-1

InbreedingCoeff
type: SiteQuality
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VQSLOD
type: SiteQuality
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BaseQRankSum
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FS
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.968e1

DP
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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QD
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SIO_000300: 1.835e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65876
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8612
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6576
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.778994719342852e-5
allele num: 10226
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16472
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
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VQSLOD
type: SiteQuality
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ClippingRankSum
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BaseQRankSum
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InbreedingCoeff
type: SiteQuality
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QD
type: SiteQuality
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FS
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SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.176135e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.33e-1

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16478
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10234
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11504
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6580
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.517773123273533e-5
allele num: 65886
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 9.19e0

FS
type: SiteQuality
SIO_000300: 3.575e0

MQ
type: SiteQuality
SIO_000300: 5.884e1

InbreedingCoeff
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SIO_000300: 5.999999999999999e-4

BaseQRankSum
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SIO_000300: -1.342e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.830000000000001e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.6e0

DP
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SIO_000300: 2.177507e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.38e0

VQSLOD
type: SiteQuality
SIO_000300: -8.518e-1

GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 26
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variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 9.769441187964049e-5
allele num: 10236
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6580
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8614
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16480
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11502
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.517450682852807e-5
allele num: 65900
num of homozygotes: 0

Other
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num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.48e-1

FS
type: SiteQuality
SIO_000300: 6.025e0

QD
type: SiteQuality
SIO_000300: 1.105e1

BaseQRankSum
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SIO_000300: -6.870000000000001e-1

MQ
type: SiteQuality
SIO_000300: 5.938e1

DP
type: SiteQuality
SIO_000300: 2.17832e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -1.114e0

MQRankSum
type: SiteQuality
SIO_000300: 6.96e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.43e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 2

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16486
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10244
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11514
num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 3.032692424334324e-5
allele num: 65948
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6584
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 4.66e-1

ReadPosRankSum
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SIO_000300: -6.62e-1

VQSLOD
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SIO_000300: 1.5e0

InbreedingCoeff
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SIO_000300: 8.0e-4

BaseQRankSum
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SIO_000300: 2.61e0

DP
type: SiteQuality
SIO_000300: 2.18066e6

MQ
type: SiteQuality
SIO_000300: 5.953e1

FS
type: SiteQuality
SIO_000300: 1.237e0

QD
type: SiteQuality
SIO_000300: 1.145e1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.4e-2

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 2
allele frequency: 1.212415130940834e-4
allele num: 16496
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10278
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66028
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11524
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.184458e6

FS
type: SiteQuality
SIO_000300: 8.695e0

ReadPosRankSum
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SIO_000300: 1.98e0

VQSLOD
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QD
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MQRankSum
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InbreedingCoeff
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SIO_000300: -3.0e-4

MQ
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SIO_000300: 5.94e1

BaseQRankSum
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SIO_000300: -2.986e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.6e-2

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10278
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11526
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.514600751241973e-5
allele num: 66024
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8628
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 6.51e-1

ClippingRankSum
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QD
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InbreedingCoeff
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MQ
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VQSLOD
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DP
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MQRankSum
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BaseQRankSum
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ReadPosRankSum
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GenotypeDepth
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 4

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10268
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 900
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8628
num of homozygotes: 0

European (Non-Finnish)
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allele count: 4
allele frequency: 6.057485537753279e-5
allele num: 66034
num of homozygotes: 0

South Asian
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DP
type: SiteQuality
SIO_000300: 2.184891e6

FS
type: SiteQuality
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InbreedingCoeff
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ClippingRankSum
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MQ
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MQRankSum
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ReadPosRankSum
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QD
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VQSLOD
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BaseQRankSum
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GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.25e1
variant carriers: 0

East Asian
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allele count: 5
allele frequency: 5.795085767269356e-4
allele num: 8628
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66034
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
allele num: 16498
num of homozygotes: 0

African
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allele count: 0
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allele num: 10268
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

VQSLOD
type: SiteQuality
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InbreedingCoeff
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BaseQRankSum
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ReadPosRankSum
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ClippingRankSum
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MQRankSum
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FS
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DP
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MQ
type: SiteQuality
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QD
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GenotypeDepth
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

Latino
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allele frequency: 0.0e0
allele num: 11526
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 1.514187941007238e-5
allele num: 66042
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8630
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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BaseQRankSum
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SIO_000300: -5.372e0

VQSLOD
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InbreedingCoeff
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ReadPosRankSum
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MQ
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FS
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SIO_000300: 1.32e0

MQRankSum
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SIO_000300: 6.38e-1

QD
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SIO_000300: 1.399e1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.07e-1

DP
type: SiteQuality
SIO_000300: 2.184857e6

GenotypeDepth
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66036
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16498
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

East Asian
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allele count: 4
allele frequency: 4.633920296570899e-4
allele num: 8632
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11526
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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DP
type: SiteQuality
SIO_000300: 2.184771e6

FS
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SIO_000300: 3.793e0

MQ
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SIO_000300: 5.956e1

MQRankSum
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ClippingRankSum
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VQSLOD
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QD
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ReadPosRankSum
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SIO_000300: 8.51e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.3e-1

InbreedingCoeff
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SIO_000300: -2.0e-4

GenotypeDepth
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11526
num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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African
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.514050387596899e-5
allele num: 66048
num of homozygotes: 0

ClippingRankSum
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SIO_000300: -1.774e0

FS
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QD
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ReadPosRankSum
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DP
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InbreedingCoeff
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MQ
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SIO_000300: 5.893e1

MQRankSum
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SIO_000300: 6.56e-1

BaseQRankSum
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SIO_000300: 2.52e-1

VQSLOD
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SIO_000300: -1.456e0

GenotypeDepth
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 4

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16496
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8628
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

European (Non-Finnish)
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allele count: 4
allele frequency: 6.055651436703303e-5
allele num: 66054
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.184398e6

MQRankSum
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ReadPosRankSum
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ClippingRankSum
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FS
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InbreedingCoeff
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BaseQRankSum
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QD
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SIO_000300: 1.096e1

VQSLOD
type: SiteQuality
SIO_000300: 1.76e-1

MQ
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SIO_000300: 5.94e1

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10250
num of homozygotes: 0

East Asian
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allele count: 1
allele frequency: 1.159017153453871e-4
allele num: 8628
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66056
num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 8.674531575294934e-5
allele num: 11528
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.913e1

MQRankSum
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BaseQRankSum
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DP
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VQSLOD
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ReadPosRankSum
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QD
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FS
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ClippingRankSum
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InbreedingCoeff
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GenotypeDepth
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8628
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Non-Finnish)
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allele count: 3
allele frequency: 4.542013626040878e-5
allele num: 66050
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Latino
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allele frequency: 8.674531575294934e-5
allele num: 11528
num of homozygotes: 0

African
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South Asian
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ClippingRankSum
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MQRankSum
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VQSLOD
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BaseQRankSum
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FS
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MQ
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InbreedingCoeff
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ReadPosRankSum
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QD
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DP
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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num of homozygotes: 0

European (Non-Finnish)
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Latino
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African
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Other
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East Asian
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MQ
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MQRankSum
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DP
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QD
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InbreedingCoeff
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ReadPosRankSum
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ClippingRankSum
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FS
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BaseQRankSum
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

Latino
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European (Non-Finnish)
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Other
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South Asian
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African
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MQ
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QD
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BaseQRankSum
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MQRankSum
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VQSLOD
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DP
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ReadPosRankSum
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InbreedingCoeff
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ClippingRankSum
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FS
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GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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European (Non-Finnish)
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African
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South Asian
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European (Finnish)
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Latino
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Other
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ReadPosRankSum
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MQRankSum
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DP
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FS
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InbreedingCoeff
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QD
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BaseQRankSum
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MQ
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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European (Non-Finnish)
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Latino
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South Asian
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African
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European (Finnish)
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ReadPosRankSum
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MQ
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MQRankSum
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DP
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FS
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BaseQRankSum
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InbreedingCoeff
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ClippingRankSum
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VQSLOD
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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num of homozygotes: 0

Other
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Latino
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South Asian
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African
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East Asian
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European (Non-Finnish)
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BaseQRankSum
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DP
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InbreedingCoeff
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ReadPosRankSum
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VQSLOD
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FS
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ClippingRankSum
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QD
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MQRankSum
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MQ
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele num: 10062
num of homozygotes: 0

Latino
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South Asian
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Other
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European (Non-Finnish)
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European (Finnish)
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East Asian
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FS
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ClippingRankSum
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BaseQRankSum
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DP
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InbreedingCoeff
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MQ
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MQRankSum
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QD
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VQSLOD
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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Other
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European (Finnish)
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Latino
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African
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South Asian
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European (Non-Finnish)
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FS
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VQSLOD
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DP
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BaseQRankSum
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QD
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InbreedingCoeff
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MQ
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MQRankSum
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ReadPosRankSum
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GenotypeDepth
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European (Non-Finnish)
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African
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Latino
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South Asian
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East Asian
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MQRankSum
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FS
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BaseQRankSum
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QD
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VQSLOD
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MQ
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DP
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11498
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.065262288310616e-4
allele num: 9684
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16490
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65444
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.158052e6

BaseQRankSum
type: SiteQuality
SIO_000300: -7.31e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.52e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.94e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.98e-2

QD
type: SiteQuality
SIO_000300: 1.118e1

MQ
type: SiteQuality
SIO_000300: 5.946e1

MQRankSum
type: SiteQuality
SIO_000300: 3.14e-1

FS
type: SiteQuality
SIO_000300: 1.941e0

VQSLOD
type: SiteQuality
SIO_000300: 2.41e0

GenotypeDepth
all individuals: 645
bin: 6.75e1
variant carriers: 10

GenotypeDepth
all individuals: 5961
bin: 3.75e1
variant carriers: 28

GenotypeQuality
all individuals: 286
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 476
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variant carriers: 1

GenotypeQuality
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bin: 4.75e1
variant carriers: 1

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 2

GenotypeQuality
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bin: 1.75e1
variant carriers: 1

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 2

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 9.75e1
variant carriers: 404

GenotypeQuality
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bin: 8.75e1
variant carriers: 2

GenotypeQuality
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bin: 9.25e1
variant carriers: 1

GenotypeQuality
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bin: 3.25e1
variant carriers: 1

GenotypeQuality
all individuals: 102
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variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 5.75e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 46
allele frequency: 7.028910213312144e-4
allele num: 65444
num of homozygotes: 0

African
type: Population
allele count: 331
allele frequency: 3.418009087154068e-2
allele num: 9684
num of homozygotes: 5

Latino
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allele count: 31
allele frequency: 2.696121064532962e-3
allele num: 11498
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.064281382656155e-5
allele num: 16490
num of homozygotes: 0

Other
type: Population
allele count: 2
allele frequency: 2.252252252252252e-3
allele num: 888
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.41e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.98e-2

MQRankSum
type: SiteQuality
SIO_000300: 3.14e-1

FS
type: SiteQuality
SIO_000300: 1.941e0

BaseQRankSum
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SIO_000300: -7.31e-1

QD
type: SiteQuality
SIO_000300: 1.118e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.94e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.52e-1

MQ
type: SiteQuality
SIO_000300: 5.946e1

DP
type: SiteQuality
SIO_000300: 2.158052e6

GenotypeDepth
all individuals: 232
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 208
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variant carriers: 0

GenotypeQuality
all individuals: 3745
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6582
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.163602513381429e-4
allele num: 8594
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16476
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9572
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65154
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11476
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.45e0

QD
type: SiteQuality
SIO_000300: 1.145e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.42e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.42e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.1e-3

DP
type: SiteQuality
SIO_000300: 2.13295e6

MQ
type: SiteQuality
SIO_000300: 5.981e1

MQRankSum
type: SiteQuality
SIO_000300: -1.27e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.06e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.7e-2

GenotypeDepth
all individuals: 232
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 462
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variant carriers: 0

GenotypeQuality
all individuals: 616
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1450
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GenotypeQuality
all individuals: 12456
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 2902
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 61
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variant carriers: 0

GenotypeQuality
all individuals: 3743
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variant carriers: 0

GenotypeQuality
all individuals: 67
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variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11480
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6580
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.068237604320078e-5
allele num: 65184
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8594
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9572
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16474
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.133094e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.82e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.4e-2

MQRankSum
type: SiteQuality
SIO_000300: 4.73e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.3e0

VQSLOD
type: SiteQuality
SIO_000300: 4.38e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

QD
type: SiteQuality
SIO_000300: 1.064e1

GenotypeDepth
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bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 907
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 12452
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 107
bin: 4.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6568
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64896
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11466
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9458
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 3.496503496503497e-4
allele num: 8580
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16458
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.75e-1

QD
type: SiteQuality
SIO_000300: 2.643e1

MQRankSum
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SIO_000300: 9.8e-1

InbreedingCoeff
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VQSLOD
type: SiteQuality
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DP
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SIO_000300: 2.117457e6

BaseQRankSum
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SIO_000300: 3.01e0

FS
type: SiteQuality
SIO_000300: 5.2e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.1e-1

MQ
type: SiteQuality
SIO_000300: 5.954e1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 12450
bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11442
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6542
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 64400
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 1
allele frequency: 1.083188908145581e-4
allele num: 9232
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.79e-1

FS
type: SiteQuality
SIO_000300: 3.899e0

InbreedingCoeff
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MQ
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ClippingRankSum
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MQRankSum
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QD
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VQSLOD
type: SiteQuality
SIO_000300: 5.44e-1

BaseQRankSum
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SIO_000300: -2.219e0

DP
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SIO_000300: 2.097967e6

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16418
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63790
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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Other
type: Population
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num of homozygotes: 0

East Asian
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VQSLOD
type: SiteQuality
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InbreedingCoeff
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DP
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MQ
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BaseQRankSum
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FS
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ReadPosRankSum
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ClippingRankSum
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QD
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MQRankSum
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3529
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8516
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6504
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.119820828667413e-4
allele num: 8930
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11408
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16418
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63790
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.19e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.3e-3

FS
type: SiteQuality
SIO_000300: 5.473e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.02e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.31e-1

DP
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SIO_000300: 2.077438e6

QD
type: SiteQuality
SIO_000300: 9.619999999999999e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.36e-1

MQRankSum
type: SiteQuality
SIO_000300: 9.45e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16422
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6512
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 3.34448160535117e-4
allele num: 8970
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63748
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.351834430856068e-4
allele num: 8504
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11414
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.261e0

FS
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SIO_000300: 1.152e0

DP
type: SiteQuality
SIO_000300: 2.073064e6

InbreedingCoeff
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MQ
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SIO_000300: 5.957e1

QD
type: SiteQuality
SIO_000300: 1.613e1

VQSLOD
type: SiteQuality
SIO_000300: 1.71e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.2e-2

MQRankSum
type: SiteQuality
SIO_000300: 3.49e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.21e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 542
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variant carriers: 0

GenotypeQuality
all individuals: 1311
bin: 3.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6470
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 860
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8480
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16402
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8756
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11386
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.582829465953338e-5
allele num: 63178
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 4.4e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.944e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.5e-2

FS
type: SiteQuality
SIO_000300: 7.025e0

VQSLOD
type: SiteQuality
SIO_000300: -6.387e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.4e-3

MQ
type: SiteQuality
SIO_000300: 5.874e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.94e-1

DP
type: SiteQuality
SIO_000300: 2.057674e6

QD
type: SiteQuality
SIO_000300: 3.11e0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 367
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GenotypeQuality
all individuals: 3455
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 864
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8788
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.782715615668365e-5
allele num: 11386
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16404
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8484
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63246
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6466
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.38e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.96e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.315e0

VQSLOD
type: SiteQuality
SIO_000300: 6.850000000000001e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 9.47e-1

QD
type: SiteQuality
SIO_000300: 1.395e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.2e-3

DP
type: SiteQuality
SIO_000300: 2.056675e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.34e-1

GenotypeDepth
all individuals: 905
bin: 6.25e1
variant carriers: 0

GenotypeDepth
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1310
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2008
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2965
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1428
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6466
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.579629103086595e-5
allele num: 63306
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8810
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 864
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16404
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11390
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8482
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.137e0

MQRankSum
type: SiteQuality
SIO_000300: -1.18e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.382e0

VQSLOD
type: SiteQuality
SIO_000300: -6.215000000000001e-1

MQ
type: SiteQuality
SIO_000300: 5.942e1

QD
type: SiteQuality
SIO_000300: 3.349e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.96e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.36e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.7e-3

DP
type: SiteQuality
SIO_000300: 2.055656e6

GenotypeDepth
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bin: 4.75e1
variant carriers: 2066

GenotypeDepth
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variant carriers: 2616

GenotypeQuality
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variant carriers: 46

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 84

GenotypeQuality
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GenotypeQuality
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variant carriers: 94

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 70

GenotypeQuality
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bin: 9.75e1
variant carriers: 20039

GenotypeQuality
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bin: 4.75e1
variant carriers: 41

GenotypeQuality
all individuals: 1953
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variant carriers: 87

GenotypeQuality
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bin: 1.75e1
variant carriers: 49

GenotypeQuality
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bin: 8.75e1
variant carriers: 82

GenotypeQuality
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variant carriers: 47

GenotypeQuality
all individuals: 740
bin: 4.25e1
variant carriers: 49

GenotypeQuality
all individuals: 12355
bin: 6.25e1
variant carriers: 60

European (Non-Finnish)
type: Population
allele count: 10918
allele frequency: 1.757113428608214e-1
allele num: 62136
num of homozygotes: 1034

East Asian
type: Population
allele count: 3476
allele frequency: 4.164869398514258e-1
allele num: 8346
num of homozygotes: 694

African
type: Population
allele count: 327
allele frequency: 3.864334672654219e-2
allele num: 8462
num of homozygotes: 9

Other
type: Population
allele count: 184
allele frequency: 2.154566744730679e-1
allele num: 854
num of homozygotes: 22

South Asian
type: Population
allele count: 3685
allele frequency: 2.25713585691535e-1
allele num: 16326
num of homozygotes: 446

European (Finnish)
type: Population
allele count: 1093
allele frequency: 1.726152874289324e-1
allele num: 6332
num of homozygotes: 88

Latino
type: Population
allele count: 4152
allele frequency: 3.701854493580599e-1
allele num: 11216
num of homozygotes: 783

ClippingRankSum
type: SiteQuality
SIO_000300: -6.75e-1

QD
type: SiteQuality
SIO_000300: 1.948e1

FS
type: SiteQuality
SIO_000300: 1.118e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.21e-1

MQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: 1.79e0

MQ
type: SiteQuality
SIO_000300: 5.958e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.3e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.04e-2

DP
type: SiteQuality
SIO_000300: 2.335943e6

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16336
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11290
num of homozygotes: 0

Other
type: Population
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East Asian
type: Population
allele count: 1
allele frequency: 1.187366421277606e-4
allele num: 8422
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African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8528
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 62280
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6410
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -8.577e-1

InbreedingCoeff
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FS
type: SiteQuality
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ClippingRankSum
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BaseQRankSum
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ReadPosRankSum
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MQ
type: SiteQuality
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QD
type: SiteQuality
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MQRankSum
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DP
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SIO_000300: 1.803668e6

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 6956
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GenotypeQuality
all individuals: 748
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 852
num of homozygotes: 0

Latino
type: Population
allele count: 9
allele frequency: 7.96742209631728e-4
allele num: 11296
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16344
num of homozygotes: 0

European (Finnish)
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East Asian
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African
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European (Non-Finnish)
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QD
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MQRankSum
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BaseQRankSum
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VQSLOD
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FS
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DP
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MQ
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InbreedingCoeff
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ReadPosRankSum
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ClippingRankSum
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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South Asian
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Other
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European (Non-Finnish)
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European (Finnish)
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Latino
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East Asian
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FS
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MQRankSum
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ClippingRankSum
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MQ
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DP
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InbreedingCoeff
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BaseQRankSum
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ReadPosRankSum
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VQSLOD
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QD
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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Latino
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East Asian
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African
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European (Non-Finnish)
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Other
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European (Finnish)
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FS
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InbreedingCoeff
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DP
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BaseQRankSum
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ClippingRankSum
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VQSLOD
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QD
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MQRankSum
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ReadPosRankSum
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MQ
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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East Asian
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Latino
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European (Non-Finnish)
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European (Finnish)
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South Asian
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ClippingRankSum
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VQSLOD
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DP
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ReadPosRankSum
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BaseQRankSum
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FS
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MQ
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QD
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InbreedingCoeff
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MQRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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Other
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South Asian
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European (Non-Finnish)
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African
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Latino
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European (Finnish)
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InbreedingCoeff
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ClippingRankSum
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BaseQRankSum
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MQRankSum
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QD
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FS
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MQ
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VQSLOD
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ReadPosRankSum
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DP
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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num of homozygotes: 0

European (Non-Finnish)
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African
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South Asian
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East Asian
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European (Finnish)
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Other
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VQSLOD
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InbreedingCoeff
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MQ
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FS
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DP
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ClippingRankSum
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MQRankSum
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ReadPosRankSum
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BaseQRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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Latino
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European (Non-Finnish)
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South Asian
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East Asian
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European (Finnish)
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DP
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QD
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MQ
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VQSLOD
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InbreedingCoeff
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MQRankSum
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ClippingRankSum
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FS
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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South Asian
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Latino
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East Asian
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6384
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.591039266849106e-5
allele num: 62852
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 860
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.32e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.74e0

VQSLOD
type: SiteQuality
SIO_000300: 1.14e0

QD
type: SiteQuality
SIO_000300: 1.451e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -2.25e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.98e-1

FS
type: SiteQuality
SIO_000300: 1.031e0

DP
type: SiteQuality
SIO_000300: 1.796786e6

GenotypeDepth
all individuals: 2466
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 509
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 583
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3800
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6797
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1047
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 425
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 139
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 574
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 586
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1087
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 119
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3209
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 888
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7624
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1159
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 339
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2903
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25534
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1506
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2248
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8462
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16354
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11314
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8968
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.589976786338919e-5
allele num: 62894
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6444
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 862
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.046e0

DP
type: SiteQuality
SIO_000300: 1.798472e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.96e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

QD
type: SiteQuality
SIO_000300: 1.212e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 2.33e0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.500000000000001e-2

MQRankSum
type: SiteQuality
SIO_000300: 6.5e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.99e0

GenotypeDepth
all individuals: 4910
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 16815
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 734
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2252
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1161
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 422
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6797
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 546
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 25393
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 118
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 159
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 504
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 635
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1043
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2903
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 999
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1505
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7633
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3200
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 864
bin: 3.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 864
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9014
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8476
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6430
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11318
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16360
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.760544606302961e-5
allele num: 63018
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.801921e6

QD
type: SiteQuality
SIO_000300: 1.265e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.557e0

MQRankSum
type: SiteQuality
SIO_000300: -3.16e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.119e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.61e0

FS
type: SiteQuality
SIO_000300: 1.755e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

MQ
type: SiteQuality
SIO_000300: 5.956e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.686e0

GenotypeDepth
all individuals: 927
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2259
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 307
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3662
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2271
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1509
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 963
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 541
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 25865
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 154
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 604
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 118
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6800
bin: 9.75e1
variant carriers: 1